RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3095
(106 letters)
>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 211
Score = 33.9 bits (76), Expect = 0.001
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 29 VNQLRPGDIDIVGAIGDSITAGNGIVATNPSQVNTENRGLSWS 71
+N + + +I+ IGDSI + + NRG+
Sbjct: 24 LNHISVVEPNIL-FIGDSIVEYYPLQELFGTSKTIVNRGIRGY 65
>d1yzfa1 c.23.10.5 (A:1-195) Lipase/acylhydrolase {Enterococcus
faecalis [TaxId: 1351]}
Length = 195
Score = 29.3 bits (64), Expect = 0.056
Identities = 11/53 (20%), Positives = 18/53 (33%)
Query: 42 AIGDSITAGNGIVATNPSQVNTENRGLSWSVGKNFGPARRRPANHYQVELISH 94
GDSITAG A +P V+ R ++ + + +
Sbjct: 6 LFGDSITAGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKR 58
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323
{Lactobacillus plantarum [TaxId: 1590]}
Length = 207
Score = 28.9 bits (63), Expect = 0.088
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 40 VGAIGDSITAGNG--------IVATNPSQVNTENRGLS 69
+GDSITA NG I+A + ++N G+S
Sbjct: 7 PAWLGDSITANNGLATVHYHDILAADWDVERSDNLGIS 44
>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 248
Score = 28.7 bits (62), Expect = 0.096
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 34 PGDIDIVGAIGDSITAGNGIVATNPSQVNTENRGLSWSVGKNFG 77
P VG IGDSIT N + L + +G
Sbjct: 5 PWQGKKVGYIGDSITDPNCYGDNIKKYWDFLKEWLGITP-FVYG 47
>d1fxwf_ c.23.10.3 (F:) Platelet-activating factor acetylhydrolase
{Cow (Bos taurus), alpha2 [TaxId: 9913]}
Length = 212
Score = 27.3 bits (59), Expect = 0.32
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 13/70 (18%)
Query: 14 PCDLSQARSPLPPNN---------VNQLRPGDIDIVGAIGDSITAG---NGIVATNPSQV 61
P + A + ++ V + + D++ +GDS+ I S +
Sbjct: 3 PAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVL-FVGDSMVQLMQQYEIWRELFSPL 61
Query: 62 NTENRGLSWS 71
+ N G+
Sbjct: 62 HALNFGIGGD 71
>d1esca_ c.23.10.1 (A:) Esterase {Streptomyces scabies [TaxId:
1930]}
Length = 302
Score = 26.6 bits (57), Expect = 0.63
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 7/63 (11%)
Query: 37 IDIVGAIGDSITAGNGIVATNPSQVNTENRGLSWSVGKNFGP---ARRRPANHYQVELIS 93
+ V GDS TA GI P RG + +N+
Sbjct: 3 VPTV-FFGDSYTANFGIA---PVTNQDSERGWCFQAKENYPAVATRSLADKGITLDVQAD 58
Query: 94 HTC 96
+C
Sbjct: 59 VSC 61
>d1es9a_ c.23.10.3 (A:) Platelet-activating factor acetylhydrolase
{Cow (Bos taurus), alpha1 [TaxId: 9913]}
Length = 212
Score = 26.4 bits (57), Expect = 0.65
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 13/68 (19%)
Query: 14 PCDLSQARSPLPPNN---------VNQLRPGDIDIVGAIGDSITAGNGIVAT---NPSQV 61
P + + V + + ++V IGDS+ S +
Sbjct: 3 PASKPTPVQDVQGDGKWMSLHHRFVADSKDKEPEVV-FIGDSLVQLMHQCEIWRELFSPL 61
Query: 62 NTENRGLS 69
+ N G+
Sbjct: 62 HALNFGIG 69
>d1vjga_ c.23.10.6 (A:) Hypothetical protein alr1529 {Nostoc sp.
pcc 7120 [TaxId: 103690]}
Length = 201
Score = 26.3 bits (56), Expect = 0.76
Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 1/17 (5%)
Query: 36 DIDIVGAIGDSITAGNG 52
I I +GDS G G
Sbjct: 4 QIRIC-FVGDSFVNGTG 19
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli
[TaxId: 562]}
Length = 214
Score = 25.8 bits (56), Expect = 1.0
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 22 SPLPPNNVNQLRPGDIDIVGAIGDSITAGNGIV 54
S +P + L PG++ + + + + +
Sbjct: 44 SRVPAERLTGLEPGELFVHRNVANLVIHTDLNC 76
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 25.5 bits (55), Expect = 1.4
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 59 SQVNTENRGLSWSVGKNFGPARRRPANHYQVELISHTCQVYLIVCVLI 106
+ +N + ++G FGP RP + + LIV +LI
Sbjct: 142 TMNEKDNFMNAENLGIVFGPTLMRPPEDSTLTTLHDMRYQKLIVQILI 189
>d1jrla_ c.23.10.5 (A:) Thioesterase I, TAP {Escherichia coli
[TaxId: 562]}
Length = 179
Score = 25.4 bits (54), Expect = 1.4
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 42 AIGDSITAGNGI 53
+GDS++AG +
Sbjct: 6 ILGDSLSAGYRM 17
>d1k7ca_ c.23.10.4 (A:) Rhamnogalacturonan acetylesterase {Fungus
(Aspergillus aculeatus) [TaxId: 5053]}
Length = 233
Score = 25.4 bits (54), Expect = 1.6
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 43 IGDSITAGNGIVATNPSQVNTENRGLSWSVGKNFG 77
GDS A NG + LS +V N
Sbjct: 6 AGDSTMAKNGGGSGTNGWGEYLASYLSATV-VNDA 39
>d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus
subtilis [TaxId: 1423]}
Length = 208
Score = 24.3 bits (51), Expect = 3.3
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 43 IGDSITAGNGIVATNP 58
GDS + ++
Sbjct: 9 GGDSTVCNYYPLNSSK 24
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga
(Porphyridium purpureum) [TaxId: 35688]}
Length = 239
Score = 23.5 bits (50), Expect = 5.9
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 22 SPLPPNNVNQLRPGDIDIVGAIGDSITAGNGIV 54
S +P N + L G++ + I + +
Sbjct: 81 SRVPANQIINLPAGEVFVHRNIANQCIHSDMSF 113
>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 131
Score = 23.0 bits (49), Expect = 8.0
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 35 GDIDIVGAIGDSITAGNGIVATNPSQVNTENRGLSW 70
D+ I + N + P +N+ W
Sbjct: 64 ATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGW 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.427
Gapped
Lambda K H
0.267 0.0396 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 401,137
Number of extensions: 15882
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 15
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.8 bits)