BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy310
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
++ ++ VS + SGE+ AI+GP+GAGKSTLL +LTGY S + G + G N Q
Sbjct: 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY-LSPSHGECHLLGQNLNSWQP 80
Query: 100 RKLS---CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRT 145
+ L+ + Q ++L +V E + + A G +A ++ + +T
Sbjct: 81 KALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT 129
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 37/51 (72%)
Query: 170 SVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
++L A ++ + ++ ++ VS + SGE+ AI+GP+GAGKSTLL +LTGY
Sbjct: 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY 60
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
ILK +S ++ GE +I+G SG+GKSTLL IL G + TEG + + G E + + ++LS
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 104 C-------YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
++ Q + L LT E + + LK+GK +A +
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENV-IVPMLKMGKPKKEAKER 120
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL------TGYKILRQLWLLEYSH-KDLAL 238
ILK +S ++ GE +I+G SG+GKSTLL IL T K+ + ++Y++ K+L+L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 239 CR 240
R
Sbjct: 79 LR 80
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
NE ILK ++ + GE A +G SG GKSTL+N++ + T G I I+GH N+ F
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-TSGQILIDGH--NIKDF 408
Query: 100 -----RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR----KDVVRTLFYRS 150
R + QDN L ++ TV+E + + +++ +AA+ D + L
Sbjct: 409 LTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGY 467
Query: 151 DTNHAQR 157
DT +R
Sbjct: 468 DTEVGER 474
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
YN +E ILK ++ + GE A +G SG GKSTL+N++ +
Sbjct: 349 YND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 390
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLSQFRK 101
T L +++ +++ GE A++GPSG+GKSTLL + G YK T G I + E+++++
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFD--EKDVTELPP 72
Query: 102 LS---CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC 158
+ Q+ L+ ++TV + N+A L +L KA R+++ + + + H +
Sbjct: 73 KDRNVGLVFQNWALYPHMTVYK--NIAFPL----ELRKAPREEIDKKVREVAKMLHIDKL 126
Query: 159 FLSGPW 164
PW
Sbjct: 127 LNRYPW 132
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
T L +++ +++ GE A++GPSG+GKSTLL + G
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG 51
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTL---LNILTGYKTSGTEGSITING-----HERN 95
+LK ++ +R GE+ ++GPSG+GKST LN+L + EG I I+G + N
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF----DEGEIIIDGINLKAKDTN 73
Query: 96 LSQFRKLSCYIMQDNQLHANLTV 118
L++ R+ + Q L ++TV
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTV 96
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+LK ++ +R GE+ ++GPSG+GKST L L
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCL 49
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTL---LNILTGYKTSGTEGSITING-----HERN 95
+LK ++ +R GE+ ++GPSG+GKST LN+L + EG I I+G + N
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF----DEGEIIIDGINLKAKDTN 94
Query: 96 LSQFRKLSCYIMQDNQLHANLTV 118
L++ R+ + Q L ++TV
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTV 117
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+LK ++ +R GE+ ++GPSG+GKST L L
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCL 70
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95
LK+V+ ++ GE +IMGPSG+GKST+LNI+ G TEG + I+ + N
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTN 70
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
LK+V+ ++ GE +IMGPSG+GKST+LNI+
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95
LK+V+ ++ GE +IMGPSG+GKST+LNI+ G TEG + I+ + N
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTN 70
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
LK+V+ ++ GE +IMGPSG+GKST+LNI+
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKLS 103
++ VS ++R GE+ ++GPSG+GK+T+L ++ G + T+G + I G +L ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-TKGDVWIGGKRVTDLPPQKRNV 89
Query: 104 CYIMQDNQLHANLTVEEAMNVATAL---KLGKDLTKAARKDVVRTLFYRSDTN 153
+ Q+ L ++TV + NV+ L ++ KD A ++++R + S N
Sbjct: 90 GLVFQNYALFQHMTVYD--NVSFGLREKRVPKDEMDARVRELLRFMRLESYAN 140
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 26/33 (78%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++ VS ++R GE+ ++GPSG+GK+T+L ++ G
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK ++ ++ G+L A+ G +GAGK++LL ++ G + +EG I +G SQF +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQFSWIM 81
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV---------------RTLFY 148
+++N + + +V A +L +D++K A KD + R
Sbjct: 82 PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 141
Query: 149 RSDTNHAQRCFLSGPWG---------TFESSVLLALAMYNRI 181
R+ A L P+G FES V +A RI
Sbjct: 142 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 183
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK ++ ++ G+L A+ G +GAGK++LL ++ G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK ++ ++ G+L A+ G +GAGK++LL ++ G + +EG I +G SQF +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
+++N + + +V A +L +D++K A KD +
Sbjct: 112 PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 151
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK ++ ++ G+L A+ G +GAGK++LL ++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK+++ + GE+ AI G +G+GK++LL ++ G + +EG I +G SQF +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKD 141
+++N + + +V A +L +D+TK A +D
Sbjct: 112 PGTIKENIIGVSYDEYRYKSVVKACQLQQDITKFAEQD 149
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK+++ + GE+ AI G +G+GK++LL ++ G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK ++ ++ G+L A+ G +GAGK++LL ++ G + +EG I +G SQF +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKDVV 143
+++N + A ++ +E +V A +L +D++K A KD +
Sbjct: 112 PGTIKEN-IIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 152
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK ++ ++ G+L A+ G +GAGK++LL ++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKLS 103
L ++S ++ SGE I+GP+GAGK+ L ++ G+ + G I ++G + +LS +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS-GRILLDGKDVTDLSPEKHDI 74
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKD 133
++ Q+ L ++ V++ + +K KD
Sbjct: 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222
L ++S ++ SGE I+GP+GAGK+ L ++ G+ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV 51
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
+P+ IL +++ ++ GE+ I+G SG+GKSTL ++ + G + I+GH+ L+
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 70
Query: 98 Q---FRKLSCYIMQDNQL 112
R+ ++QDN L
Sbjct: 71 DPNWLRRQVGVVLQDNVL 88
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLALC 239
IL +++ ++ GE+ I+G SG+GKSTL ++ + I +L H DLAL
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH-DLALA 70
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
+P+ IL +++ ++ GE+ I+G SG+GKSTL ++ + G + I+GH+ L+
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 76
Query: 98 Q---FRKLSCYIMQDNQL 112
R+ ++QDN L
Sbjct: 77 DPNWLRRQVGVVLQDNVL 94
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLALC 239
IL +++ ++ GE+ I+G SG+GKSTL ++ + I +L H DLAL
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH-DLALA 76
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
+P+ IL +++ ++ GE+ I+G SG+GKSTL ++ + G + I+GH+ L+
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 70
Query: 98 Q---FRKLSCYIMQDNQL 112
R+ ++QDN L
Sbjct: 71 DPNWLRRQVGVVLQDNVL 88
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLALC 239
IL +++ ++ GE+ I+G SG+GKSTL ++ + I +L H DLAL
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH-DLALA 70
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
+P+ IL +++ ++ GE+ I+G SG+GKSTL ++ + G + I+GH+ L+
Sbjct: 14 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 72
Query: 98 Q---FRKLSCYIMQDNQL 112
R+ ++QDN L
Sbjct: 73 DPNWLRRQVGVVLQDNVL 90
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLALC 239
IL +++ ++ GE+ I+G SG+GKSTL ++ + I +L H DLAL
Sbjct: 19 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH-DLALA 72
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
+P+ IL +++ ++ GE+ I+G SG+GKSTL ++ + G + I+GH+ L+
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 76
Query: 98 Q---FRKLSCYIMQDNQL 112
R+ ++QDN L
Sbjct: 77 DPNWLRRQVGVVLQDNVL 94
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLALC 239
IL +++ ++ GE+ I+G SG+GKSTL ++ + I +L H DLAL
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH-DLALA 76
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
+P+ IL +++ ++ GE+ I+G SG+GKSTL ++ + G + I+GH+ L+
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 76
Query: 98 Q---FRKLSCYIMQDNQL 112
R+ ++QDN L
Sbjct: 77 DPNWLRRQVGVVLQDNVL 94
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLALC 239
IL +++ ++ GE+ I+G SG+GKSTL ++ + I +L H DLAL
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH-DLALA 76
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-----HERNLSQ 98
+L +S L GE+ I+G SG GK+TLL L G++ + G I+++G NL
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS-GEISLSGKTIFSKNTNLPV 77
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV 142
+ Y++Q+ L +LTV N+A L GK T R+ +
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYR--NIAYGLGNGKGRTAQERQRI 119
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221
+L +S L GE+ I+G SG GK+TLL L G++
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
E T L +SG +R+GE+ ++GP+GAGKSTLL + G TSG +GSI G
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSG-KGSIQFAGQPLEAWSAT 69
Query: 101 KLSCY 105
KL+ +
Sbjct: 70 KLALH 74
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ E T L +SG +R+GE+ ++GP+GAGKSTLL + G
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
E T L +SG +R+GE+ ++GP+GAGKSTLL + G TSG +GSI G
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSG-KGSIQFAGQPLEAWSAT 69
Query: 101 KLSCY 105
KL+ +
Sbjct: 70 KLALH 74
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ E T L +SG +R+GE+ ++GP+GAGKSTLL + G
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 28/164 (17%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK ++ ++ G+L A+ G +GAGK++LL ++ G + +EG I +G SQF +
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQFSWIM 93
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKDVV---------------RTL 146
+++N + ++ +E +V A +L +D++K A KD + R
Sbjct: 94 PGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 152
Query: 147 FYRSDTNHAQRCFLSGPWG---------TFESSVLLALAMYNRI 181
R+ A L P+G FES V +A RI
Sbjct: 153 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 196
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK ++ ++ G+L A+ G +GAGK++LL ++ G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 68
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 28/164 (17%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK ++ ++ G+L A+ G +GAGK++LL ++ G + +EG I +G SQF +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQFSWIM 81
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKDVV---------------RTL 146
+++N + ++ +E +V A +L +D++K A KD + R
Sbjct: 82 PGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140
Query: 147 FYRSDTNHAQRCFLSGPWG---------TFESSVLLALAMYNRI 181
R+ A L P+G FES V +A RI
Sbjct: 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 184
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK ++ ++ G+L A+ G +GAGK++LL ++ G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
+P+ IL +++ ++ GE+ I+G +G+GKSTL ++ + G + I+GH+ L+
Sbjct: 14 KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 72
Query: 98 Q---FRKLSCYIMQDNQL 112
R+ ++QDN L
Sbjct: 73 DPNWLRRQVGVVLQDNVL 90
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLALC 239
IL +++ ++ GE+ I+G +G+GKSTL ++ + I +L H DLAL
Sbjct: 19 VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGH-DLALA 72
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK+++ + GE+ AI G +G+GK++LL ++ G + +EG I +G SQF +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKD 141
+++N + + ++ +E +V A +L +D+TK A +D
Sbjct: 112 PGTIKENII-SGVSYDEYRYKSVVKACQLQQDITKFAEQD 150
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK+++ + GE+ AI G +G+GK++LL ++ G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK ++ ++ G+L A+ G +GAGK++LL ++ G + +EG I +G SQF +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKDVV 143
+++N + ++ +E +V A +L +D++K A KD +
Sbjct: 112 PGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNI 152
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK ++ ++ G+L A+ G +GAGK++LL ++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK+++ + GE+ AI G +G+GK++LL ++ G + +EG I +G SQF +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKD 141
+++N + ++ +E +V A +L +D+TK A +D
Sbjct: 112 PGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQD 150
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK+++ + GE+ AI G +G+GK++LL ++ G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK+++ + GE+ AI G +G+GK++LL ++ G + +EG I +G SQF +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKD 141
+++N + ++ +E +V A +L +D+TK A +D
Sbjct: 112 PGTIKENIIRG-VSYDEYRYKSVVKACQLQQDITKFAEQD 150
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK+++ + GE+ AI G +G+GK++LL ++ G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK+++ + GE+ AI G +G+GK++LL ++ G + +EG I +G SQF +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKD 141
+++N + ++ +E +V A +L +D+TK A +D
Sbjct: 112 PGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQD 150
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK+++ + GE+ AI G +G+GK++LL ++ G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 20/129 (15%)
Query: 48 VSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERN--LSQFRKLSC 104
VS ++ GE A++GPSG GK+T L +L G YK T G I + N ++R++
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVNDIPPKYREVGM 79
Query: 105 YIMQDNQLHANLTVEEAMNVATAL---KLGKD-----LTKAARKDVVRTLFYRSDTN--- 153
+ Q+ L+ ++TV E N+A L ++ KD + + ARK ++ L R T
Sbjct: 80 -VFQNYALYPHMTVFE--NIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSG 136
Query: 154 -HAQRCFLS 161
QR L+
Sbjct: 137 GQQQRVALA 145
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNILTG-YK 221
VS ++ GE A++GPSG GK+T L +L G YK
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95
LK+V+ ++ GE +I GPSG+GKST LNI+ G TEG + I+ + N
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNII-GCLDKPTEGEVYIDNIKTN 70
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
LK+V+ ++ GE +I GPSG+GKST LNI+
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNII 51
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
Length = 250
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE-GSITINGH 92
+TILK V+ + GE+ A+MGP+GAGKSTL IL G E G I ++G
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGE 67
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++ I +TILK V+ + GE+ A+MGP+GAGKSTL IL G
Sbjct: 9 LWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
N +LK V+ +G++ ++G +G+GK+TLL IL G + G I ++G +
Sbjct: 22 NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA--GEIFLDGSPADPFLL 79
Query: 100 RKLSCYIMQDNQLH-ANLTVEEAMNVATALKL 130
RK Y+ Q+ TVEE +VA +L++
Sbjct: 80 RKNVGYVFQNPSSQIIGATVEE--DVAFSLEI 109
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
R + +LK V+ +G++ ++G +G+GK+TLL IL G
Sbjct: 20 RYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG 59
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT------EGSITINGHERNLSQ 98
L +V+ + +GE I+GPSGAGK+T + I+ G T + + NG +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVA---TALKLGKDLTKAARKDVVRTLFYRSDTNHA 155
RK+ + Q L+ NLT E N+A T +K+ K+ + ++V + L D +H
Sbjct: 81 DRKIGM-VFQTWALYPNLTAFE--NIAFPLTNMKMSKEEIRKRVEEVAKIL----DIHHV 133
Query: 156 QRCFLSGPWGTFESSVLLALAM 177
F G + V LA A+
Sbjct: 134 LNHFPRELSGAQQQRVALARAL 155
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222
L +V+ + +GE I+GPSGAGK+T + I+ G +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV 56
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
E T L +SG +R+GE+ ++GP+GAGKSTLL G TSG +GSI G
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG-KGSIQFAGQPLEAWSAT 69
Query: 101 KLSCY 105
KL+ +
Sbjct: 70 KLALH 74
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
+ E T L +SG +R+GE+ ++GP+GAGKSTLL
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLL 43
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
E T L +SG +R+GE+ ++GP+GAGKSTLL G TSG +GSI G
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG-KGSIQFAGQPLEAWSAT 69
Query: 101 KLSCY 105
KL+ +
Sbjct: 70 KLALH 74
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
+ E T L +SG +R+GE+ ++GP+GAGKSTLL
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLL 43
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNLSQFR 100
IL+ ++ R+ +G+ A++G SG GKST++++L Y +G ITI+G + NL R
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-LKGKITIDGVDVRDINLEFLR 491
Query: 101 KLSCYIMQDNQLHANLTVEEAMNV 124
K + Q+ L N T+EE +++
Sbjct: 492 KNVAVVSQEPALF-NCTIEENISL 514
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT-GYKTSGTEGSITINGHE 93
E E ILK +S + G+ A++GPSG GKST++ +L Y T G G I I+G E
Sbjct: 1088 ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG--GEIFIDGSE 1142
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
Y E ILK +S + G+ A++GPSG GKST++ +L
Sbjct: 1086 YPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL 1125
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
IL+ ++ R+ +G+ A++G SG GKST++++L Y
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT------EGSITINGHERNLSQ 98
L +V+ + +GE I+GPSGAGK+T + I+ G T + + NG +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVA---TALKLGKDLTKAARKDVVRTLFYRSDTNHA 155
RK+ + Q L+ NLT E N+A T +K+ K+ + ++V + L NH
Sbjct: 81 DRKIGM-VFQTWALYPNLTAFE--NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 156 QRCFLSG 162
R G
Sbjct: 138 PRELSGG 144
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222
L +V+ + +GE I+GPSGAGK+T + I+ G +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV 56
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
E I + S + SG +TA++GPSG+GKST+L++L + G+I+++GH+
Sbjct: 356 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS-GTISLDGHD 407
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
Y E I + S + SG +TA++GPSG+GKST+L++L
Sbjct: 351 YPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 390
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK ++ ++ G+L A+ G +GAGK++LL ++ G + +EG I +G SQ +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
+++N + + +V A +L +D++K A KD +
Sbjct: 112 PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 151
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK ++ ++ G+L A+ G +GAGK++LL ++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 25/162 (15%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK ++ ++ G+L A+ G +GAGK++LL ++ G + +EG I +G SQ +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV---------------RTLFY 148
+++N + + +V A +L +D++K A KD + R
Sbjct: 112 PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171
Query: 149 RSDTNHAQRCFLSGPWG---------TFESSVLLALAMYNRI 181
R+ A L P+G FES V +A RI
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK ++ ++ G+L A+ G +GAGK++LL ++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNL--S 97
+K +LK ++ ++ G+ A++GP+G+GK+T++N+L + G I ++G + R + S
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD-RGQILVDGIDIRKIKRS 425
Query: 98 QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 139
R ++QD L + TV+E + +++ +AA+
Sbjct: 426 SLRSSIGIVLQDTILFST-TVKENLKYGNPGATDEEIKEAAK 466
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 29/38 (76%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+K +LK ++ ++ G+ A++GP+G+GK+T++N+L +
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
E I + S + SG +TA++GPSG+GKST+L++L + G+I+++GH+
Sbjct: 387 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS-GTISLDGHD 438
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
Y E I + S + SG +TA++GPSG+GKST+L++L
Sbjct: 382 YPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 421
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78
L VS + G++T I+GP+G+GKSTL+N++TG+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
L VS + G++T I+GP+G+GKSTL+N++TG+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78
L VS + G++T I+GP+G+GKSTL+N++TG+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
L VS + G++T I+GP+G+GKSTL+N++TG+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---L 96
+ + IL+ +S + + A GPSG GKST+ ++L + T G ITI+G + L
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITIDGQPIDNISL 71
Query: 97 SQFRKLSCYIMQDNQLHA 114
+R ++ QD+ + A
Sbjct: 72 ENWRSQIGFVSQDSAIMA 89
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+ IL+ +S + + A GPSG GKST+ ++L +
Sbjct: 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER--NLSQ 98
E + K ++ + GE +GPSG GKSTLL ++ G +T T G + I G +R +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFI-GEKRMNDTPP 72
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
+ + Q L+ +L+V E N++ LKL A+K+V+
Sbjct: 73 AERGVGMVFQSYALYPHLSVAE--NMSFGLKLA-----GAKKEVI 110
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223
E + K ++ + GE +GPSG GKSTLL ++ G + +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI 55
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
E + K ++ + GE +GPSG GKSTLL ++ G +T T G + I N +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRMNDTPPA 73
Query: 101 KLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
+ + Q L+ +L+V E N++ LKL A+K+V+
Sbjct: 74 ERGVGMVFQSYALYPHLSVAE--NMSFGLKLA-----GAKKEVI 110
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223
E + K ++ + GE +GPSG GKSTLL ++ G + +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI 55
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
KTILK +S ++ G+ + G +GAGK+TLLNIL Y+ + T G++ + G
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA-TSGTVNLFG 82
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 169 SSVLLALAMYNRIHE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221
S L+ L R + KTILK +S ++ G+ + G +GAGK+TLLNIL Y+
Sbjct: 18 SHXLIQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
E + K ++ + GE +GPSG GKSTLL ++ G +T T G + I N +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRMNDTPPA 73
Query: 101 KLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
+ + Q L+ +L+V E N++ LKL A+K+V+
Sbjct: 74 ERGVGMVFQSYALYPHLSVAE--NMSFGLKLA-----GAKKEVI 110
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223
E + K ++ + GE +GPSG GKSTLL ++ G + +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI 55
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSITINGHE 93
+K IL+ +S + GE+ AIMGP+G+GKSTL L G Y+ +G G++ G +
Sbjct: 12 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG--GTVEFKGKD 66
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ +K IL+ +S + GE+ AIMGP+G+GKSTL L G
Sbjct: 11 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 49
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQF 99
K ILK +S + GE+ ++GP+GAGK+T L I++ + G +T+ G +
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-IKPSSGIVTVFGKNVVEEPHEV 86
Query: 100 RKLSCYIMQDNQLHANL 116
RKL Y+ ++ + N+
Sbjct: 87 RKLISYLPEEAGAYRNM 103
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
+ RI +K ILK +S + GE+ ++GP+GAGK+T L I++
Sbjct: 21 LRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS 62
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSITINGHE 93
+K IL+ +S + GE+ AIMGP+G+GKSTL L G Y+ +G G++ G +
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG--GTVEFKGKD 85
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ +K IL+ +S + GE+ AIMGP+G+GKSTL L G
Sbjct: 30 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78
L VS + G++T I+GP+G+GKSTL+N++TG+
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGF 56
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
L VS + G++T I+GP+G+GKSTL+N++TG+
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGF 56
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLS 97
EK L VS + G+ A++G SG+GKST+ N+ T + + GSI ++GH + L+
Sbjct: 355 EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS-GSICLDGHDVRDYKLT 413
Query: 98 QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
R+ + Q+ L + A + + +AAR+
Sbjct: 414 NLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQ 456
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
EK L VS + G+ A++G SG+GKST+ N+ T +
Sbjct: 355 EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
P EK L++VS + GE + G +G+GKSTLL I+ G T G + +G + +
Sbjct: 17 PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-IEPTSGDVLYDGERKKGYE 75
Query: 99 FRKLSCYIMQ--DNQLHANLTVEEAMNVATALK 129
R+ Q ++Q A +E VA A+K
Sbjct: 76 IRRNIGIAFQYPEDQFFAERVFDE---VAFAVK 105
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
EK L++VS + GE + G +G+GKSTLL I+ G
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG 55
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
P EK L++VS + GE + G +G+GKSTLL I+ G T G + +G + +
Sbjct: 19 PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-IEPTSGDVLYDGERKKGYE 77
Query: 99 FRKLSCYIMQ--DNQLHANLTVEEAMNVATALK 129
R+ Q ++Q A +E VA A+K
Sbjct: 78 IRRNIGIAFQYPEDQFFAERVFDE---VAFAVK 107
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
EK L++VS + GE + G +G+GKSTLL I+ G
Sbjct: 21 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG 57
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 22/105 (20%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-------------TSGTEGSI 87
E T ++ +S ++ GE ++GPSG GK+T L ++ G + + E I
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 88 TINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 132
+ +R+++ + Q L+ ++TV + N+A LKL K
Sbjct: 75 FVPPKDRDIAM-------VFQSYALYPHMTVYD--NIAFPLKLRK 110
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E T ++ +S ++ GE ++GPSG GK+T L ++ G
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG 51
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLSQFR 100
+L+ ++ LR GE+TA++GP+G+GKST+ +L Y+ +G G + ++G + L Q+
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG--GQLLLDG--KPLPQYE 85
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 173 LALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT-------GYKILRQ 225
++ A NR + +L+ ++ LR GE+TA++GP+G+GKST+ +L G +L
Sbjct: 20 VSFAYPNR-PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDG 78
Query: 226 LWLLEYSHKDL 236
L +Y H+ L
Sbjct: 79 KPLPQYEHRYL 89
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 49 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSIT 88
+G + GE+ I+GP+G GK+T IL G + + EGS+T
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVG-EITADEGSVT 326
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 191 SGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+G + GE+ I+GP+G GK+T IL G
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVG 316
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI 87
L+ G +R GE+ I+GP+G GK+T + +L G + TEG +
Sbjct: 358 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKV 399
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L+ G +R GE+ I+GP+G GK+T + +L G
Sbjct: 358 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG 390
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTG 77
++ G + I+GP+G GK+T + IL G
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAG 125
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTG 219
++ G + I+GP+G GK+T + IL G
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAG 125
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI 87
L+ G +R GE+ I+GP+G GK+T + +L G + TEG +
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKV 413
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L+ G +R GE+ I+GP+G GK+T + +L G
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG 404
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTG 77
++ G + I+GP+G GK+T + IL G
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAG 139
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTG 219
++ G + I+GP+G GK+T + IL G
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAG 139
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKL 102
T +K +S ++ GE ++GPSG GK+T L + G + T G I I E NL +
Sbjct: 20 TAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEP-TRGQIYI---EDNLVADPEK 75
Query: 103 SCY----------IMQDNQLHANLTVEEAMNVATALKLGK 132
+ + Q L+ + TV + N+A LKL K
Sbjct: 76 GVFVPPKERDVAXVFQSYALYPHXTVYD--NIAFPLKLRK 113
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 175 LAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ ++ R + T +K +S ++ GE ++GPSG GK+T L + G
Sbjct: 10 INIWKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAG 54
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ERNLSQ 98
L +VS + +G++ ++G SGAGKSTL+ + + TEGS+ ++G E L++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 79
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
R+ I Q L ++ TV NVA L+L ++ V L
Sbjct: 80 ARRQIGMIFQHFNLLSSRTV--FGNVALPLELDNTPKDEVKRRVTELL 125
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL 214
L +VS + +G++ ++G SGAGKSTL+
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLI 48
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ERNLSQ 98
L +VS + +G++ ++G SGAGKSTL+ + + TEGS+ ++G E L++
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 102
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
R+ I Q L ++ TV NVA L+L ++ V L
Sbjct: 103 ARRQIGMIFQHFNLLSSRTV--FGNVALPLELDNTPKDEVKRRVTELL 148
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL 214
L +VS + +G++ ++G SGAGKSTL+
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLI 71
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ERNLSQ 98
L +VS + +G++ ++G SGAGKSTL+ + + TEGS+ ++G E L++
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 102
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
R+ I Q L ++ TV NVA L+L ++ V L
Sbjct: 103 ARRQIGXIFQHFNLLSSRTV--FGNVALPLELDNTPKDEVKRRVTELL 148
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL 214
L +VS + +G++ ++G SGAGKSTL+
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLI 71
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF----RKLSCYIM 107
++ GE ++GPSG GK+T L ++ G + TEG I +R+++ R +S +
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEGRIYFG--DRDVTYLPPKDRNISM-VF 89
Query: 108 QDNQLHANLTVEEAMNVATALKLGK 132
Q + ++TV E N+A LK+ K
Sbjct: 90 QSYAVWPHMTVYE--NIAFPLKIKK 112
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTG 219
++ GE ++GPSG GK+T L ++ G
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAG 59
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF----RKLSCYIM 107
++ GE ++GPSG GK+T L ++ G + TEG I +R+++ R +S +
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEGRIYFG--DRDVTYLPPKDRNISM-VF 90
Query: 108 QDNQLHANLTVEEAMNVATALKLGK 132
Q + ++TV E N+A LK+ K
Sbjct: 91 QSYAVWPHMTVYE--NIAFPLKIKK 113
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTG 219
++ GE ++GPSG GK+T L ++ G
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAG 60
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLSQFRK 101
L++++ ++ +G+ A++G SG+GKST+ +++T + EG I ++GH E L+ R
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID-EGEILMDGHDLREYTLASLRN 417
Query: 102 LSCYIMQDNQLHANLTVEEAMNVATA 127
+ Q+ L N TV A N+A A
Sbjct: 418 QVALVSQNVHLF-NDTV--ANNIAYA 440
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 27/34 (79%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
L++++ ++ +G+ A++G SG+GKST+ +++T +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLS 97
E L++++ ++ +G+ A++G SG+GKST+ +++T + EG I ++GH E L+
Sbjct: 355 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID-EGHILMDGHDLREYTLA 413
Query: 98 QFRKLSCYIMQDNQLHANLTVEEAMNVATA 127
R + Q+ L N TV A N+A A
Sbjct: 414 SLRNQVALVSQNVHLF-NDTV--ANNIAYA 440
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 28/38 (73%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
E L++++ ++ +G+ A++G SG+GKST+ +++T +
Sbjct: 355 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 36.6 bits (83), Expect = 0.011, Method: Composition-based stats.
Identities = 14/19 (73%), Positives = 19/19 (100%)
Query: 59 AIMGPSGAGKSTLLNILTG 77
A++GP+GAGKSTL+N+LTG
Sbjct: 697 AVIGPNGAGKSTLINVLTG 715
Score = 36.6 bits (83), Expect = 0.011, Method: Composition-based stats.
Identities = 14/19 (73%), Positives = 19/19 (100%)
Query: 201 AIMGPSGAGKSTLLNILTG 219
A++GP+GAGKSTL+N+LTG
Sbjct: 697 AVIGPNGAGKSTLINVLTG 715
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG 82
K +L RL+ I GP+G GKSTL + + G
Sbjct: 442 KILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDG 482
Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTL 213
K +L RL+ I GP+G GKSTL
Sbjct: 442 KILLNKTQLRLKRARRYGICGPNGCGKSTL 471
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 36.6 bits (83), Expect = 0.011, Method: Composition-based stats.
Identities = 14/19 (73%), Positives = 19/19 (100%)
Query: 59 AIMGPSGAGKSTLLNILTG 77
A++GP+GAGKSTL+N+LTG
Sbjct: 703 AVIGPNGAGKSTLINVLTG 721
Score = 36.6 bits (83), Expect = 0.011, Method: Composition-based stats.
Identities = 14/19 (73%), Positives = 19/19 (100%)
Query: 201 AIMGPSGAGKSTLLNILTG 219
A++GP+GAGKSTL+N+LTG
Sbjct: 703 AVIGPNGAGKSTLINVLTG 721
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG 82
K +L RL+ I GP+G GKSTL + + G
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDG 488
Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTL 213
K +L RL+ I GP+G GKSTL
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTL 477
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
+ L+ VS + G+ A++GPSGAGKST+L +L + + G I I+G +++SQ +
Sbjct: 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI-SSGCIRIDG--QDISQVTQ 123
Query: 102 LS 103
S
Sbjct: 124 AS 125
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+ L+ VS + G+ A++GPSGAGKST+L +L
Sbjct: 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 22/26 (84%), Gaps = 2/26 (7%)
Query: 59 AIMGPSGAGKSTLLNILTG--YKTSG 82
A++GP+GAGKSTL+N+LTG TSG
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSG 728
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 19/19 (100%)
Query: 201 AIMGPSGAGKSTLLNILTG 219
A++GP+GAGKSTL+N+LTG
Sbjct: 703 AVIGPNGAGKSTLINVLTG 721
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG 82
K +L RL+ I GP+G GKSTL+ + + G
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDG 488
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
K +L RL+ I GP+G GKSTL+
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLM 478
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL- 112
+GE I+GP+G+GK+TLL ++G G+I ING E RK+ YI L
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLP--YSGNIFINGME-----VRKIRNYIRYSTNLP 81
Query: 113 ---HANLTVEEAMNVATALK-LGKDL 134
+TV + + + LK L +DL
Sbjct: 82 EAYEIGVTVNDIVYLYEELKGLDRDL 107
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 196 SGELTAIMGPSGAGKSTLLNILTG 219
+GE I+GP+G+GK+TLL ++G
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISG 52
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI 87
L+ G ++ GE+ I+GP+G GK+T + L G + TEG I
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEP-TEGKI 343
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L+ G ++ GE+ I+GP+G GK+T + L G
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAG 334
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTG 77
++ G + I+GP+G GKST + IL G
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAG 69
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTG 219
++ G + I+GP+G GKST + IL G
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAG 69
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI-----TINGHERNLSQF 99
LK ++ ++ GE+TAI+G +G GKSTL G + G I I+ + + +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI-LKPSSGRILFDNKPIDYSRKGIMKL 82
Query: 100 RKLSCYIMQ--DNQLHANLTVEEAMNVATALKLGKD 133
R+ + Q DNQL + ++ A +KL +D
Sbjct: 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED 118
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY------KILRQLWLLEYSHKDLALCR 240
LK ++ ++ GE+TAI+G +G GKSTL G +IL ++YS K + R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE---RNLS 97
E ILK ++ +++SG+ A++G SG GKST + ++ +G ++I+G + N+
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP-LDGMVSIDGQDIRTINVR 460
Query: 98 QFRKLSCYIMQDNQLHANLTVEE---AMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH 154
R++ + Q+ L A E T ++ K + +A D + L ++ DT
Sbjct: 461 YLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLV 520
Query: 155 AQR 157
+R
Sbjct: 521 GER 523
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
+L+ +S ++ G+ A++G SG GKST++ +L + GS+ ++G E
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-MAGSVFLDGKE 1096
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
Y E ILK ++ +++SG+ A++G SG GKST + ++
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+L+ +S ++ G+ A++G SG GKST++ +L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE---RNLS 97
E ILK ++ +++SG+ A++G SG GKST + ++ +G ++I+G + N+
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP-LDGMVSIDGQDIRTINVR 460
Query: 98 QFRKLSCYIMQDNQLHANLTVEE---AMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH 154
R++ + Q+ L A E T ++ K + +A D + L ++ DT
Sbjct: 461 YLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLV 520
Query: 155 AQR 157
+R
Sbjct: 521 GER 523
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
+L+ +S ++ G+ A++G SG GKST++ +L + GS+ ++G E
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-MAGSVFLDGKE 1096
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
Y E ILK ++ +++SG+ A++G SG GKST + ++
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+L+ +S ++ G+ A++G SG GKST++ +L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 59 AIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKLSCYIMQDNQLHANLT 117
++GP+GAGKS L ++ G G + +NG + L R+ ++ QD L +L+
Sbjct: 28 VLLGPTGAGKSVFLELIAGI-VKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 118 VEEAMNVATALK 129
V N+A L+
Sbjct: 87 VYR--NIAYGLR 96
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQF 99
IL+++S + G+ ++G +G+GKSTLL+ + TEG I I+G + L Q+
Sbjct: 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAF--LRLLNTEGEIQIDGVSWDSITLEQW 92
Query: 100 RKLSCYIMQ 108
RK I Q
Sbjct: 93 RKAFGVIPQ 101
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
IL+++S + G+ ++G +G+GKSTLL+
Sbjct: 35 AILENISFSISPGQRVGLLGRTGSGKSTLLS 65
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HER 94
+ N +T LKS++ + SG A++G +G+GKST+ +L Y+ EG I I G ++
Sbjct: 30 QTNHRT-LKSINFFIPSGTTCALVGHTGSGKSTIAKLL--YRFYDAEGDIKIGGKNVNKY 86
Query: 95 NLSQFRKLSCYIMQDNQL 112
N + R + + QD L
Sbjct: 87 NRNSIRSIIGIVPQDTIL 104
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
LKS++ + SG A++G +G+GKST+ +L
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
N +L V+ ++ G L A++G +G+GKSTL+N++
Sbjct: 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI 389
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 180 RIHEKT--ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
R E T +L V+ ++ G L A++G +G+GKSTL+N++
Sbjct: 350 RYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI 389
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative
Metal-Chelate Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative
Metal-Chelate Type Abc Transporter
Length = 253
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
E + + ++ L G++ A++G +G GKSTLL++L G
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG 53
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E + + ++ L G++ A++G +G GKSTLL++L G
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG 53
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITING 91
PN + +L+ ++ L G++TA++GP+G+GKST+ +L Y+ +G G + ++G
Sbjct: 30 PNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG--GKVLLDG 80
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL------TGYKILRQ-LWLLEYSHKDL 236
+L+ ++ L G++TA++GP+G+GKST+ +L TG K+L L++Y H L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL 91
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITING 91
PN + +L+ ++ L G++TA++GP+G+GKST+ +L Y+ +G G + ++G
Sbjct: 30 PNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG--GKVLLDG 80
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL------TGYKILRQ-LWLLEYSHKDL 236
+L+ ++ L G++TA++GP+G+GKST+ +L TG K+L L++Y H L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL 91
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITING 91
PN + +L+ ++ L G++TA++GP+G+GKST+ +L Y+ +G G + ++G
Sbjct: 30 PNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG--GKVLLDG 80
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL------TGYKILRQ-LWLLEYSHKDL 236
+L+ ++ L G++TA++GP+G+GKST+ +L TG K+L L++Y H L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL 91
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ 225
LK+VS ++ G A+ G SG+GKSTL+N + YK L Q
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL-YKALAQ 677
Score = 32.3 bits (72), Expect = 0.27, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 73
LK+VS ++ G A+ G SG+GKSTL+N
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ 225
LK+VS ++ G A+ G SG+GKSTL+N + YK L Q
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL-YKALAQ 677
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 73
LK+VS ++ G A+ G SG+GKSTL+N
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
+K +L+ ++ + G + GP+G GK+TLL ++ Y +G I NG
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY-LKPLKGEIIYNG 70
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
++K +L+ ++ + G + GP+G GK+TLL ++ Y
Sbjct: 20 YDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ 225
LK+VS ++ G A+ G SG+GKSTL+N + YK L Q
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL-YKALAQ 375
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 73
LK+VS ++ G A+ G SG+GKSTL+N
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 366
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK VS + R+G++ +I+G SG+GKST L + + +EG+I +NG NL + +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGAIIVNGQNINLVRDKDGQ 79
Query: 104 CYIMQDNQL 112
+ NQL
Sbjct: 80 LKVADKNQL 88
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 76
LK+V +SG +T + GP+GAGKS+L ++
Sbjct: 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
LK+V +SG +T + GP+GAGKS+L ++
Sbjct: 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
+K + ++ G++ ++G +GAGK+T L+ + G +G I NG +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL-VRAQKGKIIFNGQD 69
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
Y IH +K + ++ G++ ++G +GAGK+T L+ + G
Sbjct: 16 YGAIHA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 76
LK+V +SG +T + GP+GAGKS+L ++
Sbjct: 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
LK+V +SG +T + GP+GAGKS+L ++
Sbjct: 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND
STATE
Length = 382
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 76
LK+V +SG +T + GP+GAGKS+L ++
Sbjct: 31 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 61
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
LK+V +SG +T + GP+GAGKS+L ++
Sbjct: 31 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 61
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 37 CEPNEKTILKSVSGRLRSGELTAIMGPSGA 66
CEPN +T +V+G+LR G T + PSG+
Sbjct: 198 CEPNCETQKWTVNGQLRVGFFTTKLVPSGS 227
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
+L G E+ +MG +G GK+TL+ +L G
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG 400
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+L G E+ +MG +G GK+TL+ +L G
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG 400
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 53 RSGELTAIMGPSGAGKSTLLNILTG 77
R G++ ++G +G GKST L IL G
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAG 125
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 195 RSGELTAIMGPSGAGKSTLLNILTG 219
R G++ ++G +G GKST L IL G
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAG 125
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 196 SGELTAIMGPSGAGKSTLLNILTGYKILRQ 225
G + + GPSG GKS++L+ LTG ++ Q
Sbjct: 164 EGFICILAGPSGVGKSSILSRLTGEELRTQ 193
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTG 77
G + + GPSG GKS++L+ LTG
Sbjct: 164 EGFICILAGPSGVGKSSILSRLTG 187
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 55 GELTAIMGPSGAGKSTLLN-ILTGYKTSGTEGSITING-HER 94
G LT++ G SG+GKSTL+N IL + G+ + G H R
Sbjct: 668 GVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTR 709
Score = 28.5 bits (62), Expect = 3.9, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 197 GELTAIMGPSGAGKSTLLN 215
G LT++ G SG+GKSTL+N
Sbjct: 668 GVLTSVTGVSGSGKSTLVN 686
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 49/137 (35%), Gaps = 27/137 (19%)
Query: 49 SGRLRSGELTAIM------GPSGAGKSTLLNILTG------------YKT---SGTEGSI 87
GRL +TAI GPSGAGK TL L Y+ + +
Sbjct: 15 PGRLERPHMTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQV 74
Query: 88 TINGHERNLSQFRKLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
I+ E + L ++ Q+ QL L E+ N +G ++AA VR
Sbjct: 75 DISTEEALVPLAAHLDVRFVSQNGQLQVILEGEDVSNEIRTETVGNTASQAAAFPRVREA 134
Query: 147 FYRSDTNHAQRCFLSGP 163
R QR F P
Sbjct: 135 LLRR-----QRAFREAP 146
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
Length = 271
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 96 LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD 151
LS F K++ +++ N LH+ ++V A+ A +L K RKD +T F + D
Sbjct: 104 LSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKD--KTTFEKLD 157
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 9/42 (21%)
Query: 196 SGELTAIMGPSGAGKSTLLNILTGYKILRQLWLL-EYSHKDL 236
S +TAI+GP+G+GKS +++ + W+ E S K+L
Sbjct: 23 SDRVTAIVGPNGSGKSNIIDAIK--------WVFGEQSKKEL 56
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 54 SGELTAIMGPSGAGKSTLLNIL 75
S +TAI+GP+G+GKS +++ +
Sbjct: 23 SDRVTAIVGPNGSGKSNIIDAI 44
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 57 LTAIMGPSGAGKSTLLNILTGYKTSGT 83
AI+G GKSTLLN L G K S T
Sbjct: 7 FIAIVGRPNVGKSTLLNKLLGQKISIT 33
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 199 LTAIMGPSGAGKSTLLNILTGYKI 222
AI+G GKSTLLN L G KI
Sbjct: 7 FIAIVGRPNVGKSTLLNKLLGQKI 30
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 57 LTAIMGPSGAGKSTLLNILTGYKTSGT 83
AI+G GKSTLLN L G K S T
Sbjct: 10 FIAIVGRPNVGKSTLLNKLLGQKISIT 36
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 199 LTAIMGPSGAGKSTLLNILTGYKI 222
AI+G GKSTLLN L G KI
Sbjct: 10 FIAIVGRPNVGKSTLLNKLLGQKI 33
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 199 LTAIMGPSGAGKSTLLNILTGYKI 222
AI+G GKSTLLN L G K+
Sbjct: 9 FVAIVGKPNVGKSTLLNNLLGVKV 32
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 57 LTAIMGPSGAGKSTLLNILTGYKTS 81
AI+G GKSTLLN L G K +
Sbjct: 9 FVAIVGKPNVGKSTLLNNLLGVKVA 33
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221
H + LK + L +G ++ G SG GKS+LLN L G +
Sbjct: 201 HTQDGLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQ 239
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTGYKTS 81
+G ++ G SG GKS+LLN L G +
Sbjct: 214 TGRISIFAGQSGVGKSSLLNALLGLQNE 241
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 58 TAIMGPSGAGKSTLLNILTGYKTS 81
AI+G GKSTLLN L G K S
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVS 35
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The
3' End Of 16s Rrna
Length = 308
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 58 TAIMGPSGAGKSTLLNILTGYKTS 81
AI+G GKSTLLN L G K S
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVS 36
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 49 SGRLRSGELTAIMGPSGAGKSTL-LNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107
+G L G + I GP +GK+TL L ++ + G + H + RKL I
Sbjct: 54 AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI- 112
Query: 108 QDNQLHANL-TVEEAMNVATAL 128
DN L + T E+A+ + AL
Sbjct: 113 -DNLLCSQPDTGEQALEICDAL 133
>pdb|1N03|A Chain A, Model For Active Reca Filament
pdb|1N03|B Chain B, Model For Active Reca Filament
pdb|1N03|C Chain C, Model For Active Reca Filament
pdb|1N03|D Chain D, Model For Active Reca Filament
pdb|1N03|E Chain E, Model For Active Reca Filament
pdb|1N03|F Chain F, Model For Active Reca Filament
pdb|1N03|G Chain G, Model For Active Reca Filament
pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
Polymer
Length = 352
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 49 SGRLRSGELTAIMGPSGAGKSTL-LNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107
+G L G + I GP +GK+TL L ++ + G + H + RKL I
Sbjct: 53 AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI- 111
Query: 108 QDNQLHANL-TVEEAMNVATAL 128
DN L + T E+A+ + AL
Sbjct: 112 -DNLLCSQPDTGEQALEICDAL 132
>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form 2
pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form3"
pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
Helical Filament Form 4"
pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
Length = 356
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 49 SGRLRSGELTAIMGPSGAGKSTL-LNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107
+G L G + I GP +GK+TL L ++ + G + H + RKL I
Sbjct: 57 AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI- 115
Query: 108 QDNQLHANL-TVEEAMNVATAL 128
DN L + T E+A+ + AL
Sbjct: 116 -DNLLCSQPDTGEQALEICDAL 136
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 50 GRLRS-GELTAIMGPSGAGKSTLLNILTGYK 79
GR+ S G T I G AGKSTLLN L G +
Sbjct: 227 GRIVSEGVSTVIAGKPNAGKSTLLNTLLGQE 257
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 192 GRLRS-GELTAIMGPSGAGKSTLLNILTGYK 221
GR+ S G T I G AGKSTLLN L G +
Sbjct: 227 GRIVSEGVSTVIAGKPNAGKSTLLNTLLGQE 257
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221
H + LK + L +G ++ G SG GKS+LLN L G +
Sbjct: 193 HTQDGLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQ 231
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTGYK 79
+G ++ G SG GKS+LLN L G +
Sbjct: 206 TGRISIFAGQSGVGKSSLLNALLGLQ 231
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221
H + LK + L +G ++ G SG GKS+LLN L G +
Sbjct: 146 HTQDGLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQ 184
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTGYKTS 81
+G ++ G SG GKS+LLN L G +
Sbjct: 159 TGRISIFAGQSGVGKSSLLNALLGLQNE 186
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
N++H K++ K L ++G SG GKSTL+N L
Sbjct: 6 NQVHRKSVKKGFEFTL------XVVGESGLGKSTLINSL 38
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTGYKTS 81
LR G I G AGKS+LLN L G + +
Sbjct: 4 LREGMKVVIAGRPNAGKSSLLNALAGREAA 33
>pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1357
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 49 SGRLRSGELTAIMGPSGAGKSTL-LNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107
+G L G + I GP +GK+TL L ++ + G + H + RKL I
Sbjct: 28 AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI- 86
Query: 108 QDNQLHANL-TVEEAMNVATAL 128
DN L + T E+A+ + AL
Sbjct: 87 -DNLLCSQPDTGEQALEICDAL 107
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 49 SGRLRSGELTAIMGPSGAGKSTL-LNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107
+G L G + I GP +GK+TL L ++ + G + H + RKL I
Sbjct: 377 AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI- 435
Query: 108 QDNQLHANL-TVEEAMNVATAL 128
DN L + T E+A+ + AL
Sbjct: 436 -DNLLCSQPDTGEQALEICDAL 456
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 49 SGRLRSGELTAIMGPSGAGKSTL-LNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107
+G L G + I GP +GK+TL L ++ + G + H + RKL I
Sbjct: 726 AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI- 784
Query: 108 QDNQLHANL-TVEEAMNVATAL 128
DN L + T E+A+ + AL
Sbjct: 785 -DNLLCSQPDTGEQALEICDAL 805
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 49 SGRLRSGELTAIMGPSGAGKSTL-LNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107
+G L G + I GP +GK+TL L ++ + G + H + RKL I
Sbjct: 1076 AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI- 1134
Query: 108 QDNQLHANL-TVEEAMNVATAL 128
DN L + T E+A+ + AL
Sbjct: 1135 -DNLLCSQPDTGEQALEICDAL 1155
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
N++H K++ K L ++G SG GKSTL+N L
Sbjct: 25 NQVHRKSVKKGFEFTL------XVVGESGLGKSTLINSL 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,598,895
Number of Sequences: 62578
Number of extensions: 195443
Number of successful extensions: 1459
Number of sequences better than 100.0: 132
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 319
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)