Query psy310
Match_columns 240
No_of_seqs 183 out of 2458
Neff 7.7
Searched_HMMs 46136
Date Sat Aug 17 01:40:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13549 xylose transporter AT 100.0 7.6E-33 1.6E-37 261.1 17.3 94 32-125 8-106 (506)
2 PRK10982 galactose/methyl gala 100.0 1.5E-32 3.2E-37 258.2 17.7 195 33-228 2-307 (491)
3 PRK10762 D-ribose transporter 100.0 1.3E-32 2.9E-37 259.2 17.2 196 32-228 7-311 (501)
4 PRK11288 araG L-arabinose tran 100.0 3E-32 6.4E-37 256.8 17.9 195 33-228 8-312 (501)
5 TIGR02633 xylG D-xylose ABC tr 100.0 3.5E-32 7.6E-37 256.1 17.3 93 33-125 5-102 (500)
6 PRK09700 D-allose transporter 100.0 4.2E-32 9E-37 256.2 17.3 196 32-228 8-322 (510)
7 TIGR03269 met_CoM_red_A2 methy 100.0 3.6E-31 7.9E-36 250.4 19.7 193 33-228 4-343 (520)
8 PRK15439 autoinducer 2 ABC tra 100.0 3.2E-31 7E-36 250.3 16.9 93 31-124 13-109 (510)
9 PRK15134 microcin C ABC transp 100.0 3.1E-30 6.7E-35 244.5 19.2 93 32-124 8-117 (529)
10 PRK10938 putative molybdenum t 100.0 1.2E-30 2.7E-35 245.1 15.9 79 32-111 6-87 (490)
11 COG1123 ATPase components of v 100.0 7.1E-30 1.5E-34 237.8 19.4 184 43-228 23-350 (539)
12 COG1126 GlnQ ABC-type polar am 100.0 5.9E-30 1.3E-34 212.6 14.6 146 32-180 5-154 (240)
13 PRK10261 glutathione transport 100.0 2.6E-29 5.6E-34 242.4 19.8 94 32-126 15-131 (623)
14 PRK15064 ABC transporter ATP-b 100.0 6.8E-29 1.5E-33 235.4 17.2 83 33-124 5-87 (530)
15 PRK11819 putative ABC transpor 100.0 8.2E-29 1.8E-33 236.2 17.1 84 32-124 9-93 (556)
16 COG3845 ABC-type uncharacteriz 100.0 2.4E-28 5.1E-33 223.0 16.4 195 33-228 8-317 (501)
17 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.6E-28 7.7E-33 231.6 17.4 84 32-124 7-91 (552)
18 COG3842 PotA ABC-type spermidi 100.0 3.1E-28 6.8E-33 217.9 13.0 145 33-180 9-154 (352)
19 COG0488 Uup ATPase components 100.0 6.1E-28 1.3E-32 227.3 15.3 83 31-122 5-87 (530)
20 PRK10636 putative ABC transpor 100.0 2.1E-28 4.5E-33 236.6 12.5 59 33-92 5-63 (638)
21 COG3839 MalK ABC-type sugar tr 99.9 2.6E-27 5.6E-32 211.0 15.2 144 33-180 7-151 (338)
22 COG1116 TauB ABC-type nitrate/ 99.9 1.7E-27 3.6E-32 202.3 12.6 142 33-180 7-148 (248)
23 PRK11147 ABC transporter ATPas 99.9 8.1E-27 1.8E-31 225.6 17.3 60 32-92 6-65 (635)
24 COG4172 ABC-type uncharacteriz 99.9 1.4E-26 3E-31 207.1 16.0 195 33-229 10-346 (534)
25 COG1129 MglA ABC-type sugar tr 99.9 1.7E-26 3.8E-31 213.8 16.7 120 32-152 11-135 (500)
26 COG1135 AbcC ABC-type metal io 99.9 1.5E-26 3.2E-31 201.1 13.1 144 33-180 5-159 (339)
27 COG1125 OpuBA ABC-type proline 99.9 5.5E-26 1.2E-30 193.0 14.4 199 32-235 4-253 (309)
28 COG2884 FtsE Predicted ATPase 99.9 2.6E-26 5.6E-31 187.4 11.4 144 33-180 5-155 (223)
29 COG1136 SalX ABC-type antimicr 99.9 1.4E-25 3E-30 189.7 14.6 144 33-180 5-160 (226)
30 COG1120 FepC ABC-type cobalami 99.9 2.6E-26 5.6E-31 197.7 10.3 171 33-204 6-213 (258)
31 COG1118 CysA ABC-type sulfate/ 99.9 1E-25 2.3E-30 195.6 11.8 147 32-180 5-155 (345)
32 COG1131 CcmA ABC-type multidru 99.9 4.9E-25 1.1E-29 194.8 16.0 145 32-180 7-154 (293)
33 PRK13409 putative ATPase RIL; 99.9 1.9E-25 4.1E-30 214.0 13.5 65 28-94 72-148 (590)
34 COG3638 ABC-type phosphate/pho 99.9 6.7E-25 1.4E-29 184.6 13.0 146 33-180 7-165 (258)
35 COG1127 Ttg2A ABC-type transpo 99.9 1.2E-24 2.6E-29 183.5 14.3 146 32-180 11-163 (263)
36 PLN03073 ABC transporter F fam 99.9 6E-25 1.3E-29 214.4 14.3 63 30-92 178-242 (718)
37 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.7E-24 3.8E-29 185.7 13.1 177 32-222 7-187 (254)
38 TIGR03265 PhnT2 putative 2-ami 99.9 6E-24 1.3E-28 192.3 15.8 144 33-180 8-152 (353)
39 PRK11650 ugpC glycerol-3-phosp 99.9 6.1E-24 1.3E-28 192.5 15.7 144 33-180 7-152 (356)
40 PRK13537 nodulation ABC transp 99.9 8.2E-24 1.8E-28 188.1 15.5 145 32-180 10-156 (306)
41 PRK11432 fbpC ferric transport 99.9 9.8E-24 2.1E-28 190.7 15.7 144 33-180 10-154 (351)
42 cd03261 ABC_Org_Solvent_Resist 99.9 1.5E-23 3.3E-28 179.1 15.4 145 33-180 4-154 (235)
43 COG4555 NatA ABC-type Na+ tran 99.9 3.7E-24 8E-29 176.3 10.8 145 32-180 4-151 (245)
44 PRK09452 potA putrescine/sperm 99.9 1.7E-23 3.7E-28 190.6 15.7 146 31-180 16-162 (375)
45 cd03265 ABC_DrrA DrrA is the A 99.9 2.5E-23 5.4E-28 176.2 15.3 144 33-180 4-149 (220)
46 COG1137 YhbG ABC-type (unclass 99.9 1.8E-24 4E-29 177.9 7.9 147 32-180 7-157 (243)
47 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.6E-23 5.7E-28 175.6 15.2 144 33-180 4-158 (218)
48 cd03259 ABC_Carb_Solutes_like 99.9 2.5E-23 5.5E-28 175.2 15.0 144 33-180 4-148 (213)
49 TIGR03258 PhnT 2-aminoethylpho 99.9 2.5E-23 5.3E-28 188.8 15.7 144 33-180 9-155 (362)
50 TIGR02314 ABC_MetN D-methionin 99.9 2.6E-23 5.7E-28 187.3 15.6 144 33-180 5-158 (343)
51 PRK10851 sulfate/thiosulfate t 99.9 2.7E-23 5.9E-28 188.0 15.5 147 33-180 6-154 (353)
52 TIGR00960 3a0501s02 Type II (G 99.9 3.3E-23 7.2E-28 174.8 15.1 167 33-220 5-184 (216)
53 PRK11607 potG putrescine trans 99.9 3.1E-23 6.8E-28 189.1 15.8 145 32-180 22-167 (377)
54 cd03269 ABC_putative_ATPase Th 99.9 3.9E-23 8.4E-28 173.7 15.0 143 33-180 4-146 (210)
55 cd03293 ABC_NrtD_SsuB_transpor 99.9 5.1E-23 1.1E-27 174.2 15.7 142 33-180 4-149 (220)
56 TIGR03608 L_ocin_972_ABC putat 99.9 4.9E-23 1.1E-27 172.4 15.4 144 33-180 2-152 (206)
57 PRK13536 nodulation factor exp 99.9 3.7E-23 8E-28 186.3 15.5 146 31-180 43-190 (340)
58 COG0411 LivG ABC-type branched 99.9 1.1E-23 2.3E-28 178.2 11.2 173 32-222 7-197 (250)
59 TIGR01186 proV glycine betaine 99.9 5.8E-23 1.3E-27 186.3 16.1 140 37-180 1-147 (363)
60 TIGR01188 drrA daunorubicin re 99.9 5.8E-23 1.3E-27 182.2 15.7 139 38-180 2-142 (302)
61 TIGR01288 nodI ATP-binding ABC 99.9 5.4E-23 1.2E-27 182.5 15.4 144 33-180 8-153 (303)
62 PRK11000 maltose/maltodextrin 99.9 5E-23 1.1E-27 187.4 15.5 144 33-180 7-151 (369)
63 cd03263 ABC_subfamily_A The AB 99.9 7.6E-23 1.7E-27 173.0 15.6 144 33-180 4-151 (220)
64 TIGR02673 FtsE cell division A 99.9 7.4E-23 1.6E-27 172.4 15.1 144 33-180 5-155 (214)
65 TIGR03522 GldA_ABC_ATP gliding 99.9 7.3E-23 1.6E-27 181.5 15.8 144 33-180 6-151 (301)
66 cd03266 ABC_NatA_sodium_export 99.9 8.5E-23 1.8E-27 172.5 15.3 144 33-180 5-154 (218)
67 cd03301 ABC_MalK_N The N-termi 99.9 9.1E-23 2E-27 171.7 15.1 144 33-180 4-148 (213)
68 cd03262 ABC_HisP_GlnQ_permease 99.9 9.8E-23 2.1E-27 171.4 15.2 145 33-180 4-153 (213)
69 cd03258 ABC_MetN_methionine_tr 99.9 1.3E-22 2.9E-27 173.0 15.9 144 33-180 5-158 (233)
70 cd03292 ABC_FtsE_transporter F 99.9 1.4E-22 3E-27 170.6 15.7 144 33-180 4-154 (214)
71 PRK11153 metN DL-methionine tr 99.9 1.2E-22 2.6E-27 183.3 16.2 144 33-180 5-158 (343)
72 PRK10908 cell division protein 99.9 1.5E-22 3.2E-27 171.7 15.6 144 33-180 5-155 (222)
73 cd03225 ABC_cobalt_CbiO_domain 99.9 1.5E-22 3.4E-27 170.1 15.5 144 33-180 3-152 (211)
74 PRK11629 lolD lipoprotein tran 99.9 1.5E-22 3.3E-27 172.9 15.6 145 32-180 8-163 (233)
75 cd03218 ABC_YhbG The ABC trans 99.9 1.4E-22 3.1E-27 172.7 14.8 144 33-180 4-151 (232)
76 cd03219 ABC_Mj1267_LivG_branch 99.9 1.6E-22 3.5E-27 172.7 15.0 147 33-180 4-161 (236)
77 COG4152 ABC-type uncharacteriz 99.9 6.2E-23 1.3E-27 173.5 12.1 143 33-180 6-148 (300)
78 cd03226 ABC_cobalt_CbiO_domain 99.9 1E-22 2.3E-27 170.6 13.4 140 33-180 3-144 (205)
79 cd03260 ABC_PstB_phosphate_tra 99.9 2.1E-22 4.6E-27 171.2 15.1 145 33-180 4-159 (227)
80 PRK11248 tauB taurine transpor 99.9 2.2E-22 4.7E-27 174.5 15.1 142 33-180 5-146 (255)
81 COG0410 LivF ABC-type branched 99.9 9.7E-23 2.1E-27 171.1 12.3 143 33-180 7-154 (237)
82 cd03296 ABC_CysA_sulfate_impor 99.9 2.1E-22 4.6E-27 172.6 14.8 147 33-180 6-154 (239)
83 TIGR02211 LolD_lipo_ex lipopro 99.9 2.9E-22 6.3E-27 169.6 15.4 144 33-180 5-159 (221)
84 PRK11264 putative amino-acid A 99.9 3.2E-22 6.8E-27 172.4 15.8 146 32-180 6-162 (250)
85 cd03295 ABC_OpuCA_Osmoprotecti 99.9 3E-22 6.5E-27 172.0 15.5 144 33-180 4-153 (242)
86 cd03256 ABC_PhnC_transporter A 99.9 2.4E-22 5.2E-27 172.1 14.6 147 33-180 4-162 (241)
87 cd03235 ABC_Metallic_Cations A 99.9 1.8E-22 3.8E-27 170.1 13.3 145 33-180 3-150 (213)
88 cd03268 ABC_BcrA_bacitracin_re 99.9 2.8E-22 6E-27 168.3 14.5 140 33-180 4-144 (208)
89 COG1122 CbiO ABC-type cobalt t 99.9 2.2E-22 4.7E-27 172.3 14.0 169 33-222 7-186 (235)
90 PRK11831 putative ABC transpor 99.9 4.4E-22 9.5E-27 173.8 16.2 146 32-180 10-161 (269)
91 PRK09493 glnQ glutamine ABC tr 99.9 4.2E-22 9.1E-27 170.8 15.8 145 33-180 5-154 (240)
92 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 4E-22 8.7E-27 170.6 15.5 144 33-180 5-150 (236)
93 cd03264 ABC_drug_resistance_li 99.9 3.9E-22 8.4E-27 167.7 14.9 143 33-180 4-148 (211)
94 PRK09536 btuD corrinoid ABC tr 99.9 2.4E-22 5.2E-27 184.4 14.6 146 33-180 7-157 (402)
95 TIGR02315 ABC_phnC phosphonate 99.9 2.2E-22 4.7E-27 172.6 13.4 147 33-180 5-163 (243)
96 cd03294 ABC_Pro_Gly_Bertaine T 99.9 4.5E-22 9.7E-27 173.8 15.4 146 31-180 26-178 (269)
97 TIGR01166 cbiO cobalt transpor 99.9 5.4E-22 1.2E-26 164.4 15.0 137 40-180 3-145 (190)
98 PRK13637 cbiO cobalt transport 99.9 5.7E-22 1.2E-26 174.7 15.8 144 33-180 6-162 (287)
99 PRK10895 lipopolysaccharide AB 99.9 5.8E-22 1.2E-26 170.0 15.4 145 33-180 7-155 (241)
100 cd03224 ABC_TM1139_LivF_branch 99.9 4.5E-22 9.8E-27 168.4 14.0 142 33-180 4-150 (222)
101 cd03234 ABCG_White The White s 99.9 6E-22 1.3E-26 168.5 14.7 148 33-180 7-161 (226)
102 PRK10584 putative ABC transpor 99.9 8.3E-22 1.8E-26 167.6 15.5 144 33-180 10-164 (228)
103 PRK11124 artP arginine transpo 99.9 8.9E-22 1.9E-26 168.9 15.4 145 33-180 6-159 (242)
104 TIGR03005 ectoine_ehuA ectoine 99.9 1.1E-21 2.3E-26 169.5 15.8 145 33-180 4-164 (252)
105 PRK10619 histidine/lysine/argi 99.9 1.4E-21 2.9E-26 169.4 16.1 146 32-180 8-170 (257)
106 TIGR00972 3a0107s01c2 phosphat 99.9 1.2E-21 2.5E-26 168.8 15.5 144 33-180 5-162 (247)
107 PRK13647 cbiO cobalt transport 99.9 1.1E-21 2.3E-26 171.9 15.4 144 33-180 8-156 (274)
108 PRK14241 phosphate transporter 99.9 1.5E-21 3.2E-26 169.3 15.9 147 32-180 7-166 (258)
109 cd03257 ABC_NikE_OppD_transpor 99.9 1.4E-21 3E-26 165.9 15.4 146 33-180 5-163 (228)
110 PRK13650 cbiO cobalt transport 99.9 1.2E-21 2.6E-26 172.0 15.4 144 33-180 8-158 (279)
111 PRK13538 cytochrome c biogenes 99.9 1.1E-21 2.4E-26 164.4 14.4 141 33-180 5-147 (204)
112 PRK13548 hmuV hemin importer A 99.9 7.8E-22 1.7E-26 171.2 13.8 142 33-178 6-150 (258)
113 cd03231 ABC_CcmA_heme_exporter 99.9 7.3E-22 1.6E-26 165.2 13.0 138 33-180 4-143 (201)
114 COG1124 DppF ABC-type dipeptid 99.9 8.1E-22 1.7E-26 166.7 13.3 142 33-180 7-159 (252)
115 PRK14247 phosphate ABC transpo 99.9 1.7E-21 3.7E-26 168.0 15.5 147 33-180 7-164 (250)
116 TIGR03411 urea_trans_UrtD urea 99.9 1.7E-21 3.6E-26 167.1 15.4 147 33-180 6-161 (242)
117 PRK13632 cbiO cobalt transport 99.9 1.5E-21 3.2E-26 170.6 15.4 145 32-180 10-160 (271)
118 PRK13540 cytochrome c biogenes 99.9 1.4E-21 2.9E-26 163.4 14.3 139 33-180 5-145 (200)
119 PRK14267 phosphate ABC transpo 99.9 1.8E-21 3.9E-26 168.1 15.4 147 33-180 8-167 (253)
120 PRK13543 cytochrome c biogenes 99.9 1.9E-21 4E-26 164.3 15.2 142 32-180 14-155 (214)
121 PRK13634 cbiO cobalt transport 99.9 1.4E-21 3E-26 172.5 14.9 143 33-180 6-163 (290)
122 PRK11247 ssuB aliphatic sulfon 99.9 8.7E-22 1.9E-26 171.0 13.4 138 31-180 14-151 (257)
123 PRK14268 phosphate ABC transpo 99.9 2.3E-21 4.9E-26 168.2 15.9 145 32-180 15-172 (258)
124 COG4181 Predicted ABC-type tra 99.9 6E-22 1.3E-26 159.7 11.2 139 38-180 19-164 (228)
125 TIGR02982 heterocyst_DevA ABC 99.9 2E-21 4.4E-26 164.6 15.1 144 34-180 6-159 (220)
126 COG1117 PstB ABC-type phosphat 99.9 9.4E-22 2E-26 163.5 12.5 145 32-180 10-167 (253)
127 PRK13651 cobalt transporter AT 99.9 1.6E-21 3.4E-26 173.4 14.9 144 33-180 6-183 (305)
128 PRK13644 cbiO cobalt transport 99.9 1.8E-21 4E-26 170.3 15.0 144 33-180 5-154 (274)
129 PRK10070 glycine betaine trans 99.9 1.9E-21 4.2E-26 178.3 15.6 144 33-180 32-182 (400)
130 PRK15079 oligopeptide ABC tran 99.9 3E-21 6.4E-26 173.4 16.4 137 42-180 34-179 (331)
131 PRK13636 cbiO cobalt transport 99.9 2.6E-21 5.6E-26 170.2 15.7 144 33-180 9-159 (283)
132 PRK10575 iron-hydroxamate tran 99.9 1.5E-21 3.3E-26 169.9 13.8 149 31-180 13-165 (265)
133 TIGR01189 ccmA heme ABC export 99.9 2.5E-21 5.4E-26 161.5 14.5 168 33-220 4-173 (198)
134 PRK13641 cbiO cobalt transport 99.9 3E-21 6.5E-26 170.1 15.7 144 33-180 6-163 (287)
135 PRK14273 phosphate ABC transpo 99.9 2.9E-21 6.4E-26 166.9 15.3 146 32-180 10-168 (254)
136 PRK13646 cbiO cobalt transport 99.9 2.4E-21 5.1E-26 170.6 15.0 143 33-180 6-163 (286)
137 PRK13539 cytochrome c biogenes 99.9 2.8E-21 6.1E-26 162.4 14.6 140 33-180 6-145 (207)
138 PRK14235 phosphate transporter 99.9 3.6E-21 7.8E-26 167.8 15.8 148 31-180 21-181 (267)
139 cd03298 ABC_ThiQ_thiamine_tran 99.9 2E-21 4.4E-26 163.3 13.6 165 33-220 4-174 (211)
140 TIGR01978 sufC FeS assembly AT 99.9 3.7E-21 8.1E-26 164.9 15.4 148 33-180 4-162 (243)
141 PRK11231 fecE iron-dicitrate t 99.9 2.2E-21 4.9E-26 167.9 14.2 146 33-180 6-156 (255)
142 COG4525 TauB ABC-type taurine 99.9 9.8E-22 2.1E-26 161.5 11.1 141 33-179 7-149 (259)
143 TIGR03410 urea_trans_UrtE urea 99.9 2.1E-21 4.4E-26 165.4 13.5 141 33-180 4-149 (230)
144 PRK13638 cbiO cobalt transport 99.9 2.7E-21 5.9E-26 168.9 14.6 144 33-180 5-154 (271)
145 PRK13652 cbiO cobalt transport 99.9 4.6E-21 1E-25 168.0 16.1 154 33-191 7-165 (277)
146 cd03300 ABC_PotA_N PotA is an 99.9 3.7E-21 7.9E-26 164.3 15.0 154 33-191 4-158 (232)
147 PRK13635 cbiO cobalt transport 99.9 3.4E-21 7.3E-26 169.2 15.1 144 33-180 9-158 (279)
148 PRK14269 phosphate ABC transpo 99.9 4.8E-21 1E-25 165.0 15.7 146 33-180 6-160 (246)
149 PRK13633 cobalt transporter AT 99.9 4.1E-21 8.8E-26 168.6 15.5 144 33-180 8-162 (280)
150 PRK13643 cbiO cobalt transport 99.9 3.7E-21 7.9E-26 169.6 15.3 143 33-180 5-162 (288)
151 TIGR03415 ABC_choXWV_ATP choli 99.9 2.8E-21 6.1E-26 176.2 14.8 145 32-180 27-182 (382)
152 cd03267 ABC_NatA_like Similar 99.9 5.1E-21 1.1E-25 164.0 15.5 140 37-180 29-171 (236)
153 PRK10247 putative ABC transpor 99.9 3.6E-21 7.8E-26 163.7 14.3 142 32-180 10-155 (225)
154 PRK11614 livF leucine/isoleuci 99.9 2.6E-21 5.7E-26 165.5 13.5 143 32-180 8-155 (237)
155 TIGR03740 galliderm_ABC gallid 99.9 4.5E-21 9.7E-26 162.7 14.8 139 33-180 4-142 (223)
156 PRK13639 cbiO cobalt transport 99.9 4.7E-21 1E-25 167.8 15.2 144 33-180 5-155 (275)
157 PRK10744 pstB phosphate transp 99.9 5.4E-21 1.2E-25 166.0 15.4 145 33-180 17-174 (260)
158 PRK11300 livG leucine/isoleuci 99.9 4.8E-21 1E-25 165.5 15.0 148 32-180 8-171 (255)
159 PRK10253 iron-enterobactin tra 99.9 2.3E-21 4.9E-26 168.8 12.9 148 31-180 9-161 (265)
160 TIGR00968 3a0106s01 sulfate AB 99.9 5.7E-21 1.2E-25 163.7 15.2 144 33-180 4-148 (237)
161 TIGR03873 F420-0_ABC_ATP propo 99.9 4.4E-21 9.5E-26 166.1 14.5 147 33-180 5-155 (256)
162 PRK14259 phosphate ABC transpo 99.9 3.4E-21 7.3E-26 168.2 13.8 144 32-180 16-172 (269)
163 TIGR02142 modC_ABC molybdenum 99.9 3.9E-21 8.6E-26 174.1 14.7 139 34-180 4-149 (354)
164 PRK14237 phosphate transporter 99.9 7.5E-21 1.6E-25 165.8 15.7 146 32-180 23-181 (267)
165 PRK14256 phosphate ABC transpo 99.9 8E-21 1.7E-25 164.0 15.7 147 32-180 7-166 (252)
166 PRK09984 phosphonate/organopho 99.9 4.9E-21 1.1E-25 166.3 14.4 148 33-180 8-170 (262)
167 PRK13640 cbiO cobalt transport 99.9 5.8E-21 1.3E-25 167.9 15.0 144 33-180 9-161 (282)
168 PRK14250 phosphate ABC transpo 99.9 3.9E-21 8.6E-26 165.1 13.3 139 33-180 7-149 (241)
169 cd03299 ABC_ModC_like Archeal 99.9 1.2E-20 2.5E-25 161.6 16.0 143 33-180 4-147 (235)
170 PRK13649 cbiO cobalt transport 99.9 8.7E-21 1.9E-25 166.4 15.5 143 33-180 6-163 (280)
171 PRK11308 dppF dipeptide transp 99.9 1.1E-20 2.3E-25 169.6 16.3 136 42-180 28-172 (327)
172 TIGR02769 nickel_nikE nickel i 99.9 9.1E-21 2E-25 165.1 15.4 137 41-180 23-168 (265)
173 TIGR02324 CP_lyasePhnL phospho 99.9 1.4E-20 2.9E-25 159.7 15.6 144 33-180 5-167 (224)
174 cd03297 ABC_ModC_molybdenum_tr 99.9 1.1E-20 2.4E-25 159.3 14.9 138 34-180 5-149 (214)
175 PLN03211 ABC transporter G-25; 99.9 9E-21 2E-25 183.9 16.3 148 32-180 71-224 (659)
176 PRK15112 antimicrobial peptide 99.9 1.2E-20 2.6E-25 164.5 15.4 145 33-180 8-167 (267)
177 PRK14242 phosphate transporter 99.9 1.4E-20 3E-25 162.6 15.6 146 32-180 9-167 (253)
178 PRK14262 phosphate ABC transpo 99.9 1.4E-20 3E-25 162.3 15.5 145 33-180 7-164 (250)
179 PRK13645 cbiO cobalt transport 99.9 1.1E-20 2.3E-25 166.7 15.0 144 33-180 10-168 (289)
180 PRK14271 phosphate ABC transpo 99.9 1.5E-20 3.2E-25 164.9 15.8 147 31-180 23-181 (276)
181 PRK13648 cbiO cobalt transport 99.9 1.3E-20 2.8E-25 164.5 15.2 144 33-180 11-160 (269)
182 PRK14240 phosphate transporter 99.9 1.6E-20 3.4E-25 161.9 15.5 145 33-180 7-164 (250)
183 PRK14270 phosphate ABC transpo 99.9 1.5E-20 3.3E-25 162.2 15.4 145 33-180 8-165 (251)
184 PRK14253 phosphate ABC transpo 99.9 1.6E-20 3.5E-25 161.8 15.4 146 32-180 6-163 (249)
185 PRK13547 hmuV hemin importer A 99.9 5.6E-21 1.2E-25 167.2 12.7 144 33-178 5-161 (272)
186 TIGR01277 thiQ thiamine ABC tr 99.9 1.3E-20 2.9E-25 158.8 14.6 152 33-191 4-156 (213)
187 PRK14251 phosphate ABC transpo 99.9 1.5E-20 3.2E-25 162.2 15.1 146 32-180 7-165 (251)
188 PRK13642 cbiO cobalt transport 99.9 1.5E-20 3.3E-25 164.8 15.3 144 33-180 8-158 (277)
189 PRK14238 phosphate transporter 99.9 1.6E-20 3.4E-25 164.2 15.3 147 31-180 26-185 (271)
190 PRK11144 modC molybdate transp 99.9 1E-20 2.2E-25 171.2 14.6 135 34-180 5-146 (352)
191 PRK14254 phosphate ABC transpo 99.9 1.7E-20 3.8E-25 165.1 15.6 144 32-180 42-198 (285)
192 PRK13631 cbiO cobalt transport 99.9 1.5E-20 3.2E-25 168.1 15.3 145 31-180 23-194 (320)
193 PRK14274 phosphate ABC transpo 99.9 2E-20 4.4E-25 162.2 15.6 146 32-180 15-173 (259)
194 PRK11022 dppD dipeptide transp 99.9 2.5E-20 5.4E-25 167.1 16.4 146 33-180 7-171 (326)
195 COG4559 ABC-type hemin transpo 99.8 4.5E-21 9.8E-26 159.3 10.5 145 33-179 5-152 (259)
196 PRK14239 phosphate transporter 99.8 2.7E-20 5.9E-25 160.6 15.7 146 32-180 8-166 (252)
197 COG4598 HisP ABC-type histidin 99.8 3.9E-21 8.4E-26 156.2 9.7 146 32-180 9-170 (256)
198 PRK14260 phosphate ABC transpo 99.8 2.4E-20 5.2E-25 161.8 15.2 146 32-180 10-168 (259)
199 COG4175 ProV ABC-type proline/ 99.8 3.4E-21 7.4E-26 168.1 9.7 167 34-204 33-239 (386)
200 KOG0061|consensus 99.8 2E-20 4.4E-25 180.0 15.7 153 40-209 41-200 (613)
201 PRK14244 phosphate ABC transpo 99.8 3E-20 6.6E-25 160.3 15.2 147 32-180 8-167 (251)
202 PRK14261 phosphate ABC transpo 99.8 3.1E-20 6.7E-25 160.5 15.2 145 33-180 10-167 (253)
203 PRK10771 thiQ thiamine transpo 99.8 1.5E-20 3.3E-25 160.4 13.1 142 33-180 5-147 (232)
204 PRK14245 phosphate ABC transpo 99.8 3.7E-20 8.1E-25 159.7 15.6 145 33-180 7-164 (250)
205 PRK14272 phosphate ABC transpo 99.8 3.5E-20 7.7E-25 159.8 15.3 146 33-180 8-166 (252)
206 PRK11701 phnK phosphonate C-P 99.8 5.3E-20 1.2E-24 159.5 16.5 146 32-180 9-169 (258)
207 PRK13541 cytochrome c biogenes 99.8 2.9E-20 6.4E-25 154.7 14.0 137 33-180 5-141 (195)
208 PRK14275 phosphate ABC transpo 99.8 3.9E-20 8.5E-25 162.9 15.5 147 31-180 41-200 (286)
209 PRK14236 phosphate transporter 99.8 4.8E-20 1E-24 161.2 15.7 147 31-180 27-186 (272)
210 TIGR00955 3a01204 The Eye Pigm 99.8 2.8E-20 6E-25 179.6 15.3 142 39-180 35-184 (617)
211 PRK14248 phosphate ABC transpo 99.8 4.8E-20 1E-24 160.7 15.4 146 32-180 24-182 (268)
212 PRK09473 oppD oligopeptide tra 99.8 6.3E-20 1.4E-24 164.7 16.4 147 32-180 15-179 (330)
213 PRK10419 nikE nickel transport 99.8 7.6E-20 1.6E-24 159.6 16.4 145 33-180 7-169 (268)
214 PRK15093 antimicrobial peptide 99.8 5.2E-20 1.1E-24 165.3 15.8 148 33-180 7-176 (330)
215 TIGR01184 ntrCD nitrate transp 99.8 4.4E-20 9.6E-25 157.6 14.5 132 45-180 1-132 (230)
216 cd03251 ABCC_MsbA MsbA is an e 99.8 8E-21 1.7E-25 162.0 9.8 141 33-180 4-156 (234)
217 PRK14255 phosphate ABC transpo 99.8 6.3E-20 1.4E-24 158.4 15.4 146 32-180 8-166 (252)
218 PRK14246 phosphate ABC transpo 99.8 7.4E-20 1.6E-24 158.8 15.8 145 33-180 14-171 (257)
219 cd03232 ABC_PDR_domain2 The pl 99.8 4.2E-20 9.1E-25 153.6 13.3 92 33-125 7-103 (192)
220 COG4619 ABC-type uncharacteriz 99.8 6.1E-21 1.3E-25 153.4 7.8 141 31-178 5-149 (223)
221 cd03233 ABC_PDR_domain1 The pl 99.8 3.8E-20 8.2E-25 155.1 13.0 122 33-180 7-136 (202)
222 PRK14243 phosphate transporter 99.8 4E-20 8.6E-25 161.0 13.5 145 31-180 12-169 (264)
223 COG3840 ThiQ ABC-type thiamine 99.8 1E-20 2.2E-25 153.9 9.0 141 34-180 6-147 (231)
224 PF00005 ABC_tran: ABC transpo 99.8 2.9E-20 6.3E-25 145.6 11.3 119 45-180 1-126 (137)
225 cd03252 ABCC_Hemolysin The ABC 99.8 1.4E-20 3E-25 160.9 10.2 141 33-180 4-156 (237)
226 cd03230 ABC_DR_subfamily_A Thi 99.8 3.7E-20 8E-25 151.4 12.3 90 33-123 4-95 (173)
227 PRK14249 phosphate ABC transpo 99.8 8.5E-20 1.8E-24 157.6 15.0 144 33-180 8-165 (251)
228 PRK14263 phosphate ABC transpo 99.8 7.1E-20 1.5E-24 159.3 14.4 143 33-180 12-167 (261)
229 cd03254 ABCC_Glucan_exporter_l 99.8 1.5E-20 3.2E-25 159.9 9.5 141 33-180 6-157 (229)
230 PRK15056 manganese/iron transp 99.8 4.2E-20 9E-25 161.5 12.6 147 33-180 10-160 (272)
231 TIGR02323 CP_lyasePhnK phospho 99.8 1.1E-19 2.4E-24 156.9 15.0 145 33-180 7-166 (253)
232 PRK14266 phosphate ABC transpo 99.8 1.3E-19 2.7E-24 156.3 15.2 145 33-180 7-164 (250)
233 cd03229 ABC_Class3 This class 99.8 3.4E-20 7.4E-25 152.3 11.0 91 33-124 4-99 (178)
234 cd03248 ABCC_TAP TAP, the Tran 99.8 1.8E-20 3.8E-25 159.2 9.4 144 32-180 14-168 (226)
235 PRK14265 phosphate ABC transpo 99.8 1E-19 2.2E-24 159.3 14.4 144 32-180 23-179 (274)
236 PRK10418 nikD nickel transport 99.8 1.5E-19 3.3E-24 156.4 15.2 141 33-180 8-158 (254)
237 PRK10261 glutathione transport 99.8 1.3E-19 2.9E-24 175.0 16.4 146 32-180 316-481 (623)
238 PRK14264 phosphate ABC transpo 99.8 1.5E-19 3.3E-24 160.6 15.5 148 32-180 48-218 (305)
239 COG4161 ArtP ABC-type arginine 99.8 5E-20 1.1E-24 147.6 11.0 145 33-180 6-159 (242)
240 COG4604 CeuD ABC-type enteroch 99.8 7E-21 1.5E-25 156.6 6.1 143 32-176 4-149 (252)
241 PRK13549 xylose transporter AT 99.8 9.5E-20 2.1E-24 172.1 14.6 149 32-180 262-423 (506)
242 TIGR02633 xylG D-xylose ABC tr 99.8 8.9E-20 1.9E-24 172.0 14.3 149 32-180 260-421 (500)
243 PRK14258 phosphate ABC transpo 99.8 2.2E-19 4.8E-24 156.0 15.4 145 32-180 10-168 (261)
244 cd03213 ABCG_EPDR ABCG transpo 99.8 8.3E-20 1.8E-24 152.1 12.2 93 33-125 7-106 (194)
245 TIGR01257 rim_protein retinal- 99.8 9.7E-20 2.1E-24 191.6 15.4 146 31-180 1939-2088(2272)
246 TIGR02770 nickel_nikD nickel i 99.8 1.7E-19 3.8E-24 153.8 14.3 133 44-180 1-143 (230)
247 TIGR01257 rim_protein retinal- 99.8 1.1E-19 2.5E-24 191.1 15.8 145 32-180 931-1079(2272)
248 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 2E-19 4.3E-24 153.1 14.4 135 33-180 26-160 (224)
249 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 3.5E-20 7.5E-25 158.6 9.7 141 33-180 4-157 (238)
250 CHL00131 ycf16 sulfate ABC tra 99.8 2.8E-19 6.1E-24 154.2 15.2 150 31-180 9-169 (252)
251 TIGR02868 CydC thiol reductant 99.8 4.3E-20 9.2E-25 175.1 11.0 139 31-180 336-488 (529)
252 cd03245 ABCC_bacteriocin_expor 99.8 5.2E-20 1.1E-24 155.6 10.4 165 33-220 6-186 (220)
253 TIGR00956 3a01205 Pleiotropic 99.8 1.5E-19 3.4E-24 187.3 16.1 147 33-180 763-919 (1394)
254 COG1119 ModF ABC-type molybden 99.8 2.8E-20 6.1E-25 157.6 8.5 148 32-180 34-189 (257)
255 TIGR03269 met_CoM_red_A2 methy 99.8 2.4E-19 5.2E-24 169.8 15.7 144 32-180 282-445 (520)
256 COG4133 CcmA ABC-type transpor 99.8 1.4E-19 3E-24 147.8 12.0 157 32-196 5-163 (209)
257 cd03253 ABCC_ATM1_transporter 99.8 6.3E-20 1.4E-24 156.7 10.4 141 33-180 4-155 (236)
258 PRK09544 znuC high-affinity zi 99.8 1.6E-19 3.4E-24 156.3 12.8 130 32-180 7-138 (251)
259 PRK15134 microcin C ABC transp 99.8 2.9E-19 6.4E-24 169.6 15.7 147 31-180 277-443 (529)
260 PRK14252 phosphate ABC transpo 99.8 4.4E-19 9.5E-24 154.4 15.2 146 32-180 19-179 (265)
261 PRK14257 phosphate ABC transpo 99.8 5.2E-19 1.1E-23 158.7 15.7 160 31-194 82-256 (329)
262 COG4136 ABC-type uncharacteriz 99.8 1E-19 2.2E-24 144.1 9.5 144 32-179 5-151 (213)
263 COG1123 ATPase components of v 99.8 4.4E-19 9.6E-24 165.8 15.3 136 42-180 304-447 (539)
264 PRK09580 sufC cysteine desulfu 99.8 4.4E-19 9.5E-24 152.6 14.2 148 33-180 5-163 (248)
265 PRK11174 cysteine/glutathione 99.8 7.7E-20 1.7E-24 175.4 10.5 142 31-180 351-503 (588)
266 PLN03140 ABC transporter G fam 99.8 4.1E-19 8.9E-24 184.2 16.2 141 40-180 891-1037(1470)
267 PRK03695 vitamin B12-transport 99.8 4E-19 8.7E-24 153.3 13.5 130 44-179 11-143 (248)
268 KOG0057|consensus 99.8 7.6E-20 1.7E-24 169.1 9.0 184 32-229 354-585 (591)
269 cd03246 ABCC_Protease_Secretio 99.8 2.9E-19 6.3E-24 146.1 11.4 88 33-122 4-96 (173)
270 cd03228 ABCC_MRP_Like The MRP 99.8 2.9E-19 6.3E-24 145.9 11.4 88 33-122 4-96 (171)
271 cd03247 ABCC_cytochrome_bd The 99.8 2.7E-19 5.9E-24 146.9 11.2 88 33-122 4-95 (178)
272 PRK09700 D-allose transporter 99.8 3.7E-19 8.1E-24 168.1 13.6 145 33-180 269-427 (510)
273 cd03215 ABC_Carb_Monos_II This 99.8 6.1E-19 1.3E-23 145.3 12.7 88 33-125 8-102 (182)
274 cd03289 ABCC_CFTR2 The CFTR su 99.8 3.1E-19 6.8E-24 156.4 11.5 135 33-180 6-156 (275)
275 cd03250 ABCC_MRP_domain1 Domai 99.8 1.9E-19 4.2E-24 150.6 9.5 130 33-180 4-145 (204)
276 cd03244 ABCC_MRP_domain2 Domai 99.8 3.5E-19 7.6E-24 150.7 11.0 146 33-191 6-167 (221)
277 cd03290 ABCC_SUR1_N The SUR do 99.8 7E-19 1.5E-23 148.7 12.8 135 34-180 5-158 (218)
278 PRK10938 putative molybdenum t 99.8 5.6E-19 1.2E-23 166.2 13.1 148 31-180 262-419 (490)
279 COG4674 Uncharacterized ABC-ty 99.8 1.3E-19 2.8E-24 148.9 7.1 161 32-211 8-179 (249)
280 COG0444 DppD ABC-type dipeptid 99.8 2.3E-18 5E-23 151.2 15.2 137 42-180 18-171 (316)
281 COG1132 MdlB ABC-type multidru 99.8 1.6E-19 3.5E-24 172.6 8.7 141 31-180 330-483 (567)
282 COG2274 SunT ABC-type bacterio 99.8 2.2E-19 4.8E-24 174.4 9.3 142 32-180 474-627 (709)
283 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 8.3E-19 1.8E-23 171.2 13.1 138 31-180 453-606 (686)
284 KOG0927|consensus 99.8 7.8E-19 1.7E-23 162.1 12.0 51 32-83 78-128 (614)
285 cd03288 ABCC_SUR2 The SUR doma 99.8 4E-19 8.6E-24 154.1 9.5 141 32-180 22-174 (257)
286 cd03223 ABCD_peroxisomal_ALDP 99.8 1.4E-18 3.1E-23 141.3 11.7 82 33-124 4-86 (166)
287 PRK10535 macrolide transporter 99.8 3.1E-18 6.7E-23 166.2 16.0 144 33-180 8-162 (648)
288 cd03214 ABC_Iron-Siderophores_ 99.8 7E-19 1.5E-23 144.8 9.8 75 33-108 3-80 (180)
289 COG0396 sufC Cysteine desulfur 99.8 3.3E-18 7.2E-23 143.7 13.9 146 33-180 7-162 (251)
290 KOG0058|consensus 99.8 3.3E-19 7.3E-24 169.5 9.0 143 31-180 467-622 (716)
291 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.3E-18 2.9E-23 145.4 11.7 90 33-122 4-98 (200)
292 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 3.3E-19 7.2E-24 174.6 9.3 143 31-180 479-633 (710)
293 TIGR01193 bacteriocin_ABC ABC- 99.8 5.9E-19 1.3E-23 172.8 10.5 143 32-180 476-629 (708)
294 cd03369 ABCC_NFT1 Domain 2 of 99.8 2.6E-18 5.7E-23 144.1 12.9 140 32-191 9-153 (207)
295 TIGR02857 CydD thiol reductant 99.8 5.6E-19 1.2E-23 167.5 9.9 149 31-191 322-486 (529)
296 PRK10790 putative multidrug tr 99.8 7.3E-19 1.6E-23 168.9 10.6 138 31-180 342-494 (592)
297 PRK10762 D-ribose transporter 99.8 3.1E-18 6.7E-23 161.6 14.6 137 43-180 266-413 (501)
298 PRK11176 lipid transporter ATP 99.8 8.2E-19 1.8E-23 168.1 10.8 145 30-180 342-498 (582)
299 COG1134 TagH ABC-type polysacc 99.8 1.5E-18 3.3E-23 147.0 11.1 128 38-178 36-163 (249)
300 PRK13546 teichoic acids export 99.8 6.8E-18 1.5E-22 147.2 15.3 127 40-180 35-161 (264)
301 PRK11160 cysteine/glutathione 99.8 1E-18 2.2E-23 167.5 11.0 140 30-180 339-493 (574)
302 TIGR00958 3a01208 Conjugate Tr 99.8 6.4E-19 1.4E-23 172.7 8.7 139 31-180 480-635 (711)
303 TIGR01842 type_I_sec_PrtD type 99.8 1.3E-18 2.9E-23 165.6 10.3 142 32-180 319-472 (544)
304 PRK11288 araG L-arabinose tran 99.8 3.5E-18 7.5E-23 161.3 12.9 137 43-180 267-414 (501)
305 PRK15064 ABC transporter ATP-b 99.8 2.9E-18 6.3E-23 162.8 12.5 133 31-180 321-456 (530)
306 PRK13657 cyclic beta-1,2-gluca 99.8 1.8E-18 3.9E-23 166.1 10.5 143 31-180 336-489 (588)
307 PRK11819 putative ABC transpor 99.8 3.9E-18 8.4E-23 162.9 12.6 136 31-180 326-463 (556)
308 PRK15439 autoinducer 2 ABC tra 99.8 7.4E-18 1.6E-22 159.5 13.9 137 43-180 277-421 (510)
309 cd03216 ABC_Carb_Monos_I This 99.8 5.7E-18 1.2E-22 137.4 11.1 75 33-108 4-82 (163)
310 TIGR03375 type_I_sec_LssB type 99.8 1.4E-18 3E-23 169.9 8.9 142 32-180 466-619 (694)
311 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 7.4E-18 1.6E-22 160.9 13.1 136 31-180 324-461 (552)
312 PRK13545 tagH teichoic acids e 99.8 1.8E-17 4E-22 155.5 15.2 137 30-180 22-161 (549)
313 COG4167 SapF ABC-type antimicr 99.8 9.4E-18 2E-22 137.0 11.4 135 42-179 26-166 (267)
314 TIGR01192 chvA glucan exporter 99.7 4E-18 8.7E-23 163.7 10.1 142 32-180 337-489 (585)
315 TIGR02204 MsbA_rel ABC transpo 99.7 2.6E-18 5.6E-23 164.4 8.6 143 31-180 339-494 (576)
316 PRK11147 ABC transporter ATPas 99.7 1.1E-17 2.4E-22 162.1 12.9 135 32-180 322-458 (635)
317 TIGR00956 3a01205 Pleiotropic 99.7 1.8E-17 3.8E-22 172.1 15.1 141 40-180 72-227 (1394)
318 TIGR02203 MsbA_lipidA lipid A 99.7 2.9E-18 6.4E-23 163.8 8.4 140 31-180 332-487 (571)
319 PTZ00265 multidrug resistance 99.7 2.6E-18 5.6E-23 178.7 8.3 143 32-180 1168-1376(1466)
320 TIGR01846 type_I_sec_HlyB type 99.7 4.5E-18 9.7E-23 166.3 9.5 142 32-180 458-611 (694)
321 COG4618 ArpD ABC-type protease 99.7 1.4E-17 3E-22 153.1 11.9 163 41-224 348-522 (580)
322 COG1101 PhnK ABC-type uncharac 99.7 7.1E-18 1.5E-22 140.6 9.1 141 39-180 16-166 (263)
323 KOG0065|consensus 99.7 2.3E-18 5E-23 172.2 7.3 181 40-220 802-1030(1391)
324 PRK10982 galactose/methyl gala 99.7 2.2E-17 4.8E-22 155.4 13.5 145 33-180 254-409 (491)
325 COG4988 CydD ABC-type transpor 99.7 6.2E-18 1.4E-22 157.9 9.7 137 33-180 324-474 (559)
326 PRK10789 putative multidrug tr 99.7 5.1E-18 1.1E-22 162.5 9.0 142 32-180 316-469 (569)
327 cd03237 ABC_RNaseL_inhibitor_d 99.7 3.3E-17 7.2E-22 141.5 12.6 120 43-179 8-132 (246)
328 PRK15177 Vi polysaccharide exp 99.7 2.5E-17 5.4E-22 139.2 11.6 121 43-180 1-122 (213)
329 TIGR03771 anch_rpt_ABC anchore 99.7 2.3E-17 5E-22 140.2 11.2 128 50-180 1-131 (223)
330 cd03291 ABCC_CFTR1 The CFTR su 99.7 3.5E-17 7.6E-22 144.0 12.1 129 32-180 42-177 (282)
331 KOG0055|consensus 99.7 1.1E-17 2.3E-22 167.1 9.0 143 31-180 352-507 (1228)
332 PLN03140 ABC transporter G fam 99.7 2.8E-17 6E-22 170.7 12.1 139 41-180 177-354 (1470)
333 PRK10636 putative ABC transpor 99.7 4.5E-17 9.6E-22 157.9 12.8 132 31-180 314-448 (638)
334 TIGR00954 3a01203 Peroxysomal 99.7 2.8E-17 6.1E-22 159.8 11.4 136 31-180 453-600 (659)
335 PTZ00243 ABC transporter; Prov 99.7 2.2E-17 4.7E-22 172.9 11.3 137 32-180 1311-1463(1560)
336 PLN03130 ABC transporter C fam 99.7 1.8E-17 4E-22 173.8 10.8 142 31-180 1239-1392(1622)
337 PRK13409 putative ATPase RIL; 99.7 7.3E-17 1.6E-21 155.0 14.1 129 32-180 343-471 (590)
338 PRK10522 multidrug transporter 99.7 3.2E-17 6.9E-22 156.3 11.3 134 32-180 325-467 (547)
339 PLN03232 ABC transporter C fam 99.7 1.5E-17 3.2E-22 173.9 9.7 137 32-180 1237-1389(1495)
340 COG4148 ModC ABC-type molybdat 99.7 2.6E-17 5.7E-22 141.8 8.3 123 47-179 16-145 (352)
341 TIGR01194 cyc_pep_trnsptr cycl 99.7 6.8E-17 1.5E-21 154.3 11.8 135 32-180 340-488 (555)
342 KOG0059|consensus 99.7 1.3E-16 2.8E-21 159.5 13.0 144 33-180 568-716 (885)
343 cd03236 ABC_RNaseL_inhibitor_d 99.7 1.2E-16 2.7E-21 138.6 11.2 136 34-180 5-157 (255)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 1.6E-16 3.5E-21 126.4 10.6 67 33-108 4-70 (144)
345 COG4586 ABC-type uncharacteriz 99.7 1.2E-16 2.6E-21 137.3 10.2 171 42-217 37-227 (325)
346 TIGR00957 MRP_assoc_pro multi 99.7 1.2E-16 2.6E-21 167.3 11.9 138 31-180 1286-1439(1522)
347 PLN03073 ABC transporter F fam 99.7 4E-16 8.7E-21 152.7 14.5 134 31-180 510-645 (718)
348 COG4172 ABC-type uncharacteriz 99.7 4.7E-16 1E-20 139.9 13.4 136 42-180 300-444 (534)
349 TIGR01271 CFTR_protein cystic 99.7 1.2E-16 2.6E-21 166.9 10.8 136 32-180 1220-1371(1490)
350 cd03222 ABC_RNaseL_inhibitor T 99.7 2.4E-16 5.2E-21 129.7 10.2 68 33-111 4-71 (177)
351 COG4107 PhnK ABC-type phosphon 99.7 1.7E-16 3.6E-21 128.8 8.6 141 33-180 10-169 (258)
352 COG4987 CydC ABC-type transpor 99.7 9.4E-17 2E-21 148.6 8.0 140 30-180 337-492 (573)
353 TIGR01187 potA spermidine/putr 99.7 3.8E-16 8.3E-21 140.0 11.7 117 60-180 1-118 (325)
354 PTZ00265 multidrug resistance 99.7 2.7E-16 5.8E-21 163.8 12.2 93 31-125 384-483 (1466)
355 COG4608 AppF ABC-type oligopep 99.7 3.8E-16 8.3E-21 134.6 10.5 100 42-179 26-126 (268)
356 cd00267 ABC_ATPase ABC (ATP-bi 99.7 1.1E-15 2.4E-20 122.8 11.0 75 33-108 3-80 (157)
357 KOG0055|consensus 99.7 5.8E-16 1.3E-20 154.9 11.4 143 31-180 989-1144(1228)
358 KOG0056|consensus 99.6 1.7E-16 3.7E-21 145.5 6.5 140 33-179 541-691 (790)
359 COG4778 PhnL ABC-type phosphon 99.6 5.5E-15 1.2E-19 119.5 10.6 149 42-195 24-184 (235)
360 PLN03130 ABC transporter C fam 99.6 3.5E-15 7.6E-20 156.8 10.4 131 32-180 617-758 (1622)
361 PLN03232 ABC transporter C fam 99.6 4.2E-15 9.2E-20 155.6 10.5 132 32-180 617-758 (1495)
362 PTZ00243 ABC transporter; Prov 99.6 7.3E-15 1.6E-19 154.1 11.7 126 37-180 668-800 (1560)
363 TIGR00957 MRP_assoc_pro multi 99.6 9.7E-15 2.1E-19 153.1 12.6 132 31-180 638-778 (1522)
364 TIGR01271 CFTR_protein cystic 99.6 9.7E-15 2.1E-19 152.8 12.0 122 41-180 438-566 (1490)
365 cd03238 ABC_UvrA The excision 99.6 1.4E-14 3E-19 119.1 9.5 61 41-108 7-67 (176)
366 COG0488 Uup ATPase components 99.5 3.8E-14 8.2E-19 134.1 11.5 131 31-179 323-456 (530)
367 PRK00635 excinuclease ABC subu 99.5 1.3E-13 2.7E-18 143.9 15.4 39 35-73 601-639 (1809)
368 KOG0054|consensus 99.5 2.4E-14 5.2E-19 146.0 9.1 88 34-123 1145-1235(1381)
369 COG1245 Predicted ATPase, RNas 99.5 5E-14 1.1E-18 128.5 9.7 31 194-224 364-394 (591)
370 KOG0066|consensus 99.5 8.1E-14 1.8E-18 126.8 11.0 44 34-77 269-312 (807)
371 KOG0062|consensus 99.5 5.1E-14 1.1E-18 129.9 9.8 51 27-77 78-128 (582)
372 cd00820 PEPCK_HprK Phosphoenol 99.5 7E-14 1.5E-18 105.5 5.8 73 42-124 2-77 (107)
373 KOG0054|consensus 99.5 2.2E-13 4.8E-18 139.0 11.2 122 41-180 533-661 (1381)
374 COG4615 PvdE ABC-type sideroph 99.4 2.3E-13 5.1E-18 122.4 8.3 82 33-115 326-411 (546)
375 COG1120 FepC ABC-type cobalami 99.4 1.1E-13 2.4E-18 119.5 5.5 58 180-237 11-75 (258)
376 COG5265 ATM1 ABC-type transpor 99.4 3.1E-13 6.7E-18 122.3 8.0 90 33-124 266-359 (497)
377 cd03278 ABC_SMC_barmotin Barmo 99.4 2.3E-13 5E-18 113.8 3.7 109 46-179 14-130 (197)
378 COG4138 BtuD ABC-type cobalami 99.4 7.9E-13 1.7E-17 107.5 5.8 113 44-166 14-129 (248)
379 COG4178 ABC-type uncharacteriz 99.4 3.6E-12 7.7E-17 121.1 10.5 135 29-180 392-533 (604)
380 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 7.4E-13 1.6E-17 114.0 5.1 44 181-224 14-57 (254)
381 COG1126 GlnQ ABC-type polar am 99.3 2.3E-12 4.9E-17 107.9 4.2 52 178-229 9-62 (240)
382 COG1116 TauB ABC-type nitrate/ 99.3 3.2E-12 7E-17 109.1 5.1 45 180-224 12-56 (248)
383 TIGR01166 cbiO cobalt transpor 99.3 4.1E-12 9E-17 105.1 5.1 47 182-228 3-51 (190)
384 COG4559 ABC-type hemin transpo 99.3 3.3E-12 7.1E-17 106.7 4.3 45 180-224 10-54 (259)
385 cd03261 ABC_Org_Solvent_Resist 99.3 5.5E-12 1.2E-16 107.7 5.2 48 181-228 10-59 (235)
386 COG1119 ModF ABC-type molybden 99.3 4.1E-12 8.9E-17 108.1 4.3 45 179-223 39-83 (257)
387 cd03259 ABC_Carb_Solutes_like 99.3 5.7E-12 1.2E-16 106.0 5.1 48 181-228 10-59 (213)
388 cd03265 ABC_DrrA DrrA is the A 99.2 6.5E-12 1.4E-16 106.2 5.2 48 181-228 10-59 (220)
389 COG1134 TagH ABC-type polysacc 99.2 7E-12 1.5E-16 106.6 5.2 45 180-224 36-80 (249)
390 TIGR03608 L_ocin_972_ABC putat 99.2 7.5E-12 1.6E-16 104.6 5.3 48 181-228 8-57 (206)
391 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.2 7.5E-12 1.6E-16 105.5 5.2 45 184-228 17-63 (218)
392 cd03270 ABC_UvrA_I The excisio 99.2 3.2E-11 6.8E-16 102.9 9.0 35 38-72 4-38 (226)
393 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.2 9.7E-12 2.1E-16 105.7 5.7 57 172-228 23-81 (224)
394 COG1131 CcmA ABC-type multidru 99.2 7.6E-12 1.6E-16 110.8 5.2 53 178-230 11-66 (293)
395 cd03235 ABC_Metallic_Cations A 99.2 7.9E-12 1.7E-16 105.1 5.0 48 181-228 9-58 (213)
396 COG0411 LivG ABC-type branched 99.2 1.9E-12 4E-17 110.0 1.1 51 174-224 7-57 (250)
397 cd03269 ABC_putative_ATPase Th 99.2 9.2E-12 2E-16 104.5 5.3 49 181-229 10-60 (210)
398 cd03225 ABC_cobalt_CbiO_domain 99.2 9E-12 1.9E-16 104.6 5.2 45 184-228 14-60 (211)
399 cd03226 ABC_cobalt_CbiO_domain 99.2 8.9E-12 1.9E-16 104.3 5.1 45 184-228 13-59 (205)
400 cd03263 ABC_subfamily_A The AB 99.2 9.5E-12 2.1E-16 105.1 5.2 45 184-228 15-61 (220)
401 cd03262 ABC_HisP_GlnQ_permease 99.2 1E-11 2.2E-16 104.3 5.2 48 181-228 10-59 (213)
402 cd03229 ABC_Class3 This class 99.2 1.1E-11 2.3E-16 101.7 5.2 47 181-227 10-58 (178)
403 cd03296 ABC_CysA_sulfate_impor 99.2 9.7E-12 2.1E-16 106.5 5.2 48 181-228 12-61 (239)
404 cd03216 ABC_Carb_Monos_I This 99.2 1.2E-11 2.6E-16 100.2 5.4 48 181-228 10-59 (163)
405 PRK13540 cytochrome c biogenes 99.2 1.1E-11 2.3E-16 103.6 5.2 48 181-228 11-60 (200)
406 TIGR01188 drrA daunorubicin re 99.2 9.6E-12 2.1E-16 110.4 5.2 48 181-228 3-52 (302)
407 cd03224 ABC_TM1139_LivF_branch 99.2 9.9E-12 2.1E-16 105.0 5.0 48 181-228 10-59 (222)
408 cd03293 ABC_NrtD_SsuB_transpor 99.2 1.2E-11 2.5E-16 104.7 5.4 45 184-228 17-63 (220)
409 cd03219 ABC_Mj1267_LivG_branch 99.2 1E-11 2.3E-16 105.9 5.0 48 181-228 10-59 (236)
410 COG0410 LivF ABC-type branched 99.2 1.1E-11 2.4E-16 104.6 5.1 47 180-226 12-60 (237)
411 cd03218 ABC_YhbG The ABC trans 99.2 1.1E-11 2.4E-16 105.5 5.1 48 181-228 10-59 (232)
412 TIGR01189 ccmA heme ABC export 99.2 1.2E-11 2.5E-16 103.1 5.2 48 181-228 10-59 (198)
413 PF00005 ABC_tran: ABC transpo 99.2 1.1E-11 2.3E-16 96.9 4.6 42 187-228 1-44 (137)
414 cd03301 ABC_MalK_N The N-termi 99.2 1.2E-11 2.5E-16 104.0 5.2 48 181-228 10-59 (213)
415 TIGR01978 sufC FeS assembly AT 99.2 8.9E-12 1.9E-16 106.7 4.5 48 181-228 10-61 (243)
416 TIGR02673 FtsE cell division A 99.2 1.2E-11 2.5E-16 104.1 5.1 46 183-228 14-61 (214)
417 COG0396 sufC Cysteine desulfur 99.2 9.5E-12 2E-16 105.0 4.4 44 181-224 13-57 (251)
418 PRK13537 nodulation ABC transp 99.2 1.2E-11 2.7E-16 110.0 5.3 49 180-228 16-66 (306)
419 PRK13538 cytochrome c biogenes 99.2 1.3E-11 2.8E-16 103.3 5.2 48 181-228 11-60 (204)
420 PRK11248 tauB taurine transpor 99.2 1.3E-11 2.7E-16 107.1 5.2 48 181-228 11-60 (255)
421 TIGR02315 ABC_phnC phosphonate 99.2 1.2E-11 2.7E-16 105.9 5.0 46 183-228 14-61 (243)
422 TIGR03410 urea_trans_UrtE urea 99.2 1.3E-11 2.9E-16 105.0 5.1 48 181-228 10-59 (230)
423 cd03231 ABC_CcmA_heme_exporter 99.2 1.4E-11 3.1E-16 102.9 5.3 48 181-228 10-59 (201)
424 TIGR00960 3a0501s02 Type II (G 99.2 1.4E-11 2.9E-16 103.9 5.1 45 184-228 16-62 (216)
425 PRK10247 putative ABC transpor 99.2 1.4E-11 3E-16 104.8 5.2 48 181-228 17-66 (225)
426 PRK13539 cytochrome c biogenes 99.2 1.5E-11 3.4E-16 103.2 5.3 48 181-228 12-61 (207)
427 cd03268 ABC_BcrA_bacitracin_re 99.2 1.5E-11 3.4E-16 103.0 5.2 48 181-228 10-59 (208)
428 PRK13536 nodulation factor exp 99.2 1.4E-11 3.1E-16 111.2 5.3 46 178-223 48-93 (340)
429 COG3842 PotA ABC-type spermidi 99.2 1.2E-11 2.6E-16 111.4 4.7 51 178-228 12-64 (352)
430 cd03230 ABC_DR_subfamily_A Thi 99.2 1.7E-11 3.7E-16 100.1 5.2 47 182-228 11-59 (173)
431 COG1127 Ttg2A ABC-type transpo 99.2 1.2E-11 2.6E-16 104.9 4.4 55 176-230 13-69 (263)
432 cd03257 ABC_NikE_OppD_transpor 99.2 1.6E-11 3.4E-16 104.1 5.1 44 185-228 19-64 (228)
433 TIGR03864 PQQ_ABC_ATP ABC tran 99.2 1.7E-11 3.6E-16 104.8 5.2 48 181-228 11-60 (236)
434 cd03256 ABC_PhnC_transporter A 99.2 1.7E-11 3.6E-16 104.9 5.2 45 184-228 14-60 (241)
435 PRK14273 phosphate ABC transpo 99.2 1.2E-11 2.6E-16 106.9 4.4 48 181-228 17-71 (254)
436 cd03267 ABC_NatA_like Similar 99.2 1.7E-11 3.7E-16 105.0 5.3 49 180-228 30-80 (236)
437 cd03266 ABC_NatA_sodium_export 99.2 1.7E-11 3.7E-16 103.4 5.1 44 185-228 19-64 (218)
438 cd03260 ABC_PstB_phosphate_tra 99.2 1.5E-11 3.3E-16 104.4 4.8 41 181-221 10-50 (227)
439 cd03258 ABC_MetN_methionine_tr 99.2 1.8E-11 3.8E-16 104.4 5.2 43 185-227 19-63 (233)
440 PRK10895 lipopolysaccharide AB 99.2 1.7E-11 3.8E-16 105.0 5.2 48 181-228 13-62 (241)
441 PRK09544 znuC high-affinity zi 99.2 1.7E-11 3.8E-16 106.1 5.2 43 181-223 14-56 (251)
442 PRK09984 phosphonate/organopho 99.2 1.3E-11 2.9E-16 107.1 4.5 48 181-228 14-66 (262)
443 cd03292 ABC_FtsE_transporter F 99.2 1.8E-11 3.9E-16 102.8 5.1 45 184-228 14-60 (214)
444 TIGR01288 nodI ATP-binding ABC 99.2 1.8E-11 3.8E-16 108.8 5.2 49 180-228 13-63 (303)
445 PRK10908 cell division protein 99.2 1.9E-11 4.2E-16 103.4 5.2 46 183-228 14-61 (222)
446 cd03214 ABC_Iron-Siderophores_ 99.2 2.1E-11 4.6E-16 100.2 5.2 48 181-228 9-58 (180)
447 PRK14241 phosphate transporter 99.2 1.4E-11 3.1E-16 106.7 4.5 48 181-228 14-68 (258)
448 cd03233 ABC_PDR_domain1 The pl 99.2 1.4E-11 3E-16 103.1 4.3 46 183-228 19-69 (202)
449 PRK14242 phosphate transporter 99.2 1.5E-11 3.2E-16 106.2 4.4 48 181-228 16-70 (253)
450 PRK14267 phosphate ABC transpo 99.2 1.5E-11 3.2E-16 106.2 4.5 48 181-228 14-68 (253)
451 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.2 2.3E-11 4.9E-16 96.7 5.2 47 182-228 11-59 (144)
452 PRK11247 ssuB aliphatic sulfon 99.2 1.9E-11 4.1E-16 106.2 5.1 48 181-228 22-71 (257)
453 PRK11264 putative amino-acid A 99.2 2E-11 4.4E-16 105.1 5.2 48 181-228 13-62 (250)
454 cd03294 ABC_Pro_Gly_Bertaine T 99.2 2.3E-11 4.9E-16 106.3 5.5 52 177-228 30-83 (269)
455 PRK10575 iron-hydroxamate tran 99.2 2E-11 4.4E-16 106.3 5.1 47 181-227 21-69 (265)
456 PRK11831 putative ABC transpor 99.2 2.2E-11 4.7E-16 106.4 5.2 48 181-228 17-66 (269)
457 PRK10584 putative ABC transpor 99.2 2.2E-11 4.8E-16 103.4 5.2 44 185-228 24-69 (228)
458 PRK09493 glnQ glutamine ABC tr 99.2 2.2E-11 4.9E-16 104.3 5.2 48 181-228 11-60 (240)
459 PRK14240 phosphate transporter 99.2 1.7E-11 3.7E-16 105.6 4.4 48 181-228 13-67 (250)
460 TIGR02211 LolD_lipo_ex lipopro 99.2 2.3E-11 5.1E-16 102.7 5.1 45 184-228 18-64 (221)
461 PRK13543 cytochrome c biogenes 99.2 2.4E-11 5.2E-16 102.5 5.2 49 180-228 20-70 (214)
462 PRK11614 livF leucine/isoleuci 99.2 2.3E-11 4.9E-16 104.0 5.1 48 181-228 15-64 (237)
463 PRK14235 phosphate transporter 99.2 1.7E-11 3.6E-16 107.0 4.3 48 181-228 29-83 (267)
464 PRK14250 phosphate ABC transpo 99.2 2.4E-11 5.2E-16 104.3 5.2 48 181-228 13-62 (241)
465 TIGR02323 CP_lyasePhnK phospho 99.2 2.4E-11 5.3E-16 104.8 5.2 48 181-228 13-62 (253)
466 PRK11629 lolD lipoprotein tran 99.2 2.4E-11 5.2E-16 103.7 5.1 45 184-228 22-68 (233)
467 PRK11124 artP arginine transpo 99.2 2.4E-11 5.2E-16 104.2 5.1 48 181-228 12-61 (242)
468 TIGR03411 urea_trans_UrtD urea 99.2 2.4E-11 5.2E-16 104.1 5.2 48 181-228 12-61 (242)
469 PRK11701 phnK phosphonate C-P 99.2 2.5E-11 5.4E-16 105.2 5.3 48 181-228 16-65 (258)
470 COG3638 ABC-type phosphate/pho 99.2 2.2E-11 4.7E-16 103.2 4.7 43 182-224 15-57 (258)
471 PRK13638 cbiO cobalt transport 99.2 2.1E-11 4.6E-16 106.5 4.9 48 181-228 11-60 (271)
472 TIGR00972 3a0107s01c2 phosphat 99.2 2.4E-11 5.3E-16 104.5 5.1 48 181-228 11-65 (247)
473 TIGR03005 ectoine_ehuA ectoine 99.2 2.5E-11 5.5E-16 104.7 5.2 48 181-228 10-59 (252)
474 PRK13637 cbiO cobalt transport 99.2 2.4E-11 5.2E-16 107.1 5.0 45 184-228 20-66 (287)
475 PRK14251 phosphate ABC transpo 99.2 2.1E-11 4.5E-16 105.1 4.4 48 181-228 14-68 (251)
476 cd03295 ABC_OpuCA_Osmoprotecti 99.2 2.9E-11 6.4E-16 103.7 5.2 45 184-228 14-60 (242)
477 PRK11231 fecE iron-dicitrate t 99.2 2.8E-11 6.1E-16 104.7 5.2 48 181-228 12-61 (255)
478 cd03223 ABCD_peroxisomal_ALDP 99.2 3.1E-11 6.8E-16 98.1 5.1 40 184-223 14-53 (166)
479 CHL00131 ycf16 sulfate ABC tra 99.2 2.3E-11 5.1E-16 104.8 4.5 48 181-228 17-68 (252)
480 PRK11300 livG leucine/isoleuci 99.2 2.8E-11 6.1E-16 104.5 5.0 48 181-228 15-64 (255)
481 PRK13547 hmuV hemin importer A 99.2 3E-11 6.4E-16 105.9 5.2 43 181-223 11-53 (272)
482 PRK13548 hmuV hemin importer A 99.2 3E-11 6.6E-16 104.8 5.2 48 181-228 12-61 (258)
483 TIGR03522 GldA_ABC_ATP gliding 99.2 3E-11 6.6E-16 107.2 5.3 48 181-228 12-61 (301)
484 TIGR03740 galliderm_ABC gallid 99.2 3.3E-11 7.2E-16 102.1 5.2 48 181-228 10-59 (223)
485 cd03228 ABCC_MRP_Like The MRP 99.2 3.2E-11 6.9E-16 98.3 4.9 44 185-228 16-61 (171)
486 PRK10418 nikD nickel transport 99.2 2.5E-11 5.3E-16 105.0 4.4 46 183-228 15-66 (254)
487 PRK14270 phosphate ABC transpo 99.2 2.5E-11 5.4E-16 104.7 4.4 48 181-228 14-68 (251)
488 PRK14247 phosphate ABC transpo 99.2 2.5E-11 5.3E-16 104.6 4.4 48 181-228 13-67 (250)
489 PRK13641 cbiO cobalt transport 99.2 3.1E-11 6.6E-16 106.4 5.0 45 184-228 20-66 (287)
490 COG4555 NatA ABC-type Na+ tran 99.2 1.7E-11 3.7E-16 101.7 3.1 48 178-225 8-56 (245)
491 PRK14237 phosphate transporter 99.2 2.6E-11 5.6E-16 105.7 4.4 48 181-228 30-84 (267)
492 TIGR02324 CP_lyasePhnL phospho 99.2 3.6E-11 7.7E-16 101.9 5.1 45 184-228 21-67 (224)
493 PRK13646 cbiO cobalt transport 99.2 3.2E-11 7E-16 106.3 4.9 45 184-228 20-66 (286)
494 PRK14268 phosphate ABC transpo 99.2 3.5E-11 7.7E-16 104.3 5.1 48 181-228 22-76 (258)
495 cd03272 ABC_SMC3_euk Eukaryoti 99.2 5.8E-11 1.3E-15 101.7 6.4 134 38-179 11-175 (243)
496 PRK14249 phosphate ABC transpo 99.2 3E-11 6.4E-16 104.2 4.6 48 181-228 14-68 (251)
497 PRK13644 cbiO cobalt transport 99.2 3.6E-11 7.7E-16 105.3 5.1 46 183-228 14-61 (274)
498 PRK10253 iron-enterobactin tra 99.1 3.7E-11 8E-16 104.6 5.0 48 181-228 17-66 (265)
499 PRK15056 manganese/iron transp 99.1 3.9E-11 8.5E-16 104.9 5.2 41 183-223 19-59 (272)
500 TIGR02769 nickel_nikE nickel i 99.1 4E-11 8.8E-16 104.4 5.2 46 183-228 23-70 (265)
No 1
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-33 Score=261.08 Aligned_cols=94 Identities=32% Similarity=0.385 Sum_probs=80.6
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEEEECCccCCch----hhhhhceEE
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITINGHERNLS----QFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v~g~~~~~~----~~~~~~g~v 106 (240)
-+|+++.++++++|+++||+|++||+++|+|||||||||||++|+|++++ |++|+|.++|.+.... ..++.++|+
T Consensus 8 ~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (506)
T PRK13549 8 MKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAII 87 (506)
T ss_pred EeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEE
Confidence 46788899888999999999999999999999999999999999998554 4799999999876321 124569999
Q ss_pred cccccccccccHHHHHHHH
Q psy310 107 MQDNQLHANLTVEEAMNVA 125 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~ 125 (240)
+|++.+++.+++.|++.+.
T Consensus 88 ~q~~~~~~~~tv~e~l~~~ 106 (506)
T PRK13549 88 HQELALVKELSVLENIFLG 106 (506)
T ss_pred EeccccCCCCcHHHHhhhc
Confidence 9999888889999988764
No 2
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=258.21 Aligned_cols=195 Identities=23% Similarity=0.257 Sum_probs=137.8
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q 108 (240)
.|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|++|
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI-YQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-CCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 4788888888999999999999999999999999999999999997 56789999999987532 123456899999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc---------
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN--------- 179 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 179 (240)
++.+++.+|+.+++.+................+.+.++++.+++.+.........|++++|++.+++++..
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 99888889999988754211000001122223344555555555433333333344444444433322110
Q ss_pred -----------------------------------------------------------------------------c--
Q psy310 180 -----------------------------------------------------------------------------R-- 180 (240)
Q Consensus 180 -----------------------------------------------------------------------------~-- 180 (240)
.
T Consensus 161 Pt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (491)
T PRK10982 161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVGRSLTQRFP 240 (491)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHHHHHHHHhCCCcccccc
Confidence 0
Q ss_pred -----------------cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 -----------------IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 -----------------~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+..+.+|+++||+|++||+++|+|+||||||||+++|+|+..+ +++|+
T Consensus 241 ~~~~~~~~~~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 307 (491)
T PRK10982 241 DKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITL 307 (491)
T ss_pred cccCCCCCcEEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEE
Confidence 0011379999999999999999999999999999999999543 56765
No 3
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=259.16 Aligned_cols=196 Identities=21% Similarity=0.207 Sum_probs=142.3
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh-hhhhceEEc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ-FRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~ 107 (240)
-+|+.+.|+++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... .. .++.++|++
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 85 (501)
T PRK10762 7 LKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI-YTRDAGSILYLGKEVTFNGPKSSQEAGIGIIH 85 (501)
T ss_pred EeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHHHhCCEEEEE
Confidence 35788899888999999999999999999999999999999999997 56789999999987532 11 245689999
Q ss_pred ccccccccccHHHHHHHHHHHhc-CCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc------
Q psy310 108 QDNQLHANLTVEEAMNVATALKL-GKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR------ 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~-~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 180 (240)
|++.+++.+++.|++.+...... .........++.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus 86 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 165 (501)
T PRK10762 86 QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIM 165 (501)
T ss_pred cchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99988889999999876421110 01112222234455666666665544444445555655555544332110
Q ss_pred -----------------------------------------------------------------------c--------
Q psy310 181 -----------------------------------------------------------------------I-------- 181 (240)
Q Consensus 181 -----------------------------------------------------------------------~-------- 181 (240)
.
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (501)
T PRK10762 166 DEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRKLEDQ 245 (501)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHHHHHHHhcCCCcccc
Confidence 0
Q ss_pred -------ccc----------eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 182 -------HEK----------TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 182 -------~~~----------~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
... .+|+++||+|++||+++|+|+||||||||+++|+|+..| +++++
T Consensus 246 ~~~~~~~~~~~~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~ 311 (501)
T PRK10762 246 YPRLDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTL 311 (501)
T ss_pred ccccccCCCCcEEEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 001 147999999999999999999999999999999999544 56654
No 4
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-32 Score=256.78 Aligned_cols=195 Identities=26% Similarity=0.297 Sum_probs=139.2
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q 108 (240)
+|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|++|
T Consensus 8 ~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q 86 (501)
T PRK11288 8 DGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN-YQPDAGSILIDGQEMRFASTTAALAAGVAIIYQ 86 (501)
T ss_pred eeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCCEEEECCEECCCCCHHHHHhCCEEEEEe
Confidence 5788888888999999999999999999999999999999999997 56789999999977532 123567999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc--------
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR-------- 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 180 (240)
++.+++.+++.+++.+................+.+..+++.+++.+.....+...|++++|++.+++++...
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 166 (501)
T PRK11288 87 ELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDE 166 (501)
T ss_pred chhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 998888899999987642111001112222233455566666554333333344445554444443321100
Q ss_pred --------------------------------------------------------------------------------
Q psy310 181 -------------------------------------------------------------------------------- 180 (240)
Q Consensus 181 -------------------------------------------------------------------------------- 180 (240)
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (501)
T PRK11288 167 PTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQAMVGREIGDIY 246 (501)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCCHHHHHHHhcCCCccccc
Confidence
Q ss_pred -----c-----------ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 -----I-----------HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 -----~-----------~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
. ..+.+|+++||+|++||+++|+|+||||||||+|+|+|+.. -+++|+
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 312 (501)
T PRK11288 247 GYRPRPLGEVRLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYL 312 (501)
T ss_pred cccccCCCCcEEEEeccccCCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEE
Confidence 0 00126899999999999999999999999999999999853 356655
No 5
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.5e-32 Score=256.12 Aligned_cols=93 Identities=28% Similarity=0.312 Sum_probs=79.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEEEECCccCCch----hhhhhceEEc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITINGHERNLS----QFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v~g~~~~~~----~~~~~~g~v~ 107 (240)
+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|++++ +++|+|.++|.++... ..+..++|++
T Consensus 5 ~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 84 (500)
T TIGR02633 5 KGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIH 84 (500)
T ss_pred EeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 5788888888999999999999999999999999999999999998543 3799999999865321 1235689999
Q ss_pred ccccccccccHHHHHHHH
Q psy310 108 QDNQLHANLTVEEAMNVA 125 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~ 125 (240)
|++.+++.+++.+++.+.
T Consensus 85 q~~~~~~~~tv~~~l~~~ 102 (500)
T TIGR02633 85 QELTLVPELSVAENIFLG 102 (500)
T ss_pred eccccCCCCcHHHHHHhh
Confidence 999888889999988754
No 6
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-32 Score=256.23 Aligned_cols=196 Identities=23% Similarity=0.261 Sum_probs=139.0
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch----hhhhhceEEc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS----QFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~----~~~~~~g~v~ 107 (240)
-+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.... ..++.++|++
T Consensus 8 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~ 86 (510)
T PRK09700 8 MAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI-HEPTKGTITINNINYNKLDHKLAAQLGIGIIY 86 (510)
T ss_pred EeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-cCCCccEEEECCEECCCCCHHHHHHCCeEEEe
Confidence 36788899888999999999999999999999999999999999997 567899999999875321 1234689999
Q ss_pred ccccccccccHHHHHHHHHHHh--c-CC-CccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc---
Q psy310 108 QDNQLHANLTVEEAMNVATALK--L-GK-DLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR--- 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~--~-~~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 180 (240)
|++.+++.+++.+++.+..... . .. ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l 166 (510)
T PRK09700 87 QELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKV 166 (510)
T ss_pred ecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9998888899999887532100 0 00 011222233455566655654443333444444444444333221100
Q ss_pred --------------------------------------------------------------------------------
Q psy310 181 -------------------------------------------------------------------------------- 180 (240)
Q Consensus 181 -------------------------------------------------------------------------------- 180 (240)
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 246 (510)
T PRK09700 167 IIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMVGREL 246 (510)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCHHHHHHHhcCCCc
Confidence
Q ss_pred --------------------------cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 --------------------------IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 --------------------------~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
.....+|+++||+|++||+++|+|+||||||||+|+|+|+.. .+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 322 (510)
T PRK09700 247 QNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322 (510)
T ss_pred cccccccccccccCCCCcEEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEE
Confidence 001137899999999999999999999999999999999954 356765
No 7
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=3.6e-31 Score=250.38 Aligned_cols=193 Identities=26% Similarity=0.289 Sum_probs=135.8
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CCCccEEEECC--------------------
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SGTEGSITING-------------------- 91 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~~~G~V~v~g-------------------- 91 (240)
+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+++ +|++|+|.+++
T Consensus 4 ~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~ 83 (520)
T TIGR03269 4 KNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCP 83 (520)
T ss_pred EEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccc
Confidence 578888888899999999999999999999999999999999999742 57899999862
Q ss_pred ---ccC--------C-----chhhhhhceEEccc-ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch
Q psy310 92 ---HER--------N-----LSQFRKLSCYIMQD-NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH 154 (240)
Q Consensus 92 ---~~~--------~-----~~~~~~~~g~v~Q~-~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 154 (240)
.++ . ....++.++|++|+ +.+++.+++.+++.+..... ........+.+.++++.+++.+
T Consensus 84 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 84 VCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred cccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChh
Confidence 111 0 01234568999997 56777889999987643221 1122223344555666666554
Q ss_pred hhhhccCCCCCchhhHHHHHHHHhc-------------------------------------------------------
Q psy310 155 AQRCFLSGPWGTFESSVLLALAMYN------------------------------------------------------- 179 (240)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 179 (240)
.....+...|++++|++.+++++..
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~ 240 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 4444444444444444433221100
Q ss_pred -----------------------------------------------ccc-----cceeeccceeEEeCCcEEEEEcCCC
Q psy310 180 -----------------------------------------------RIH-----EKTILKSVSGRLRSGELTAIMGPSG 207 (240)
Q Consensus 180 -----------------------------------------------~~~-----~~~il~~vsl~I~~Ge~valvG~NG 207 (240)
.+. .+.+|+++||+|++||+++|+|+||
T Consensus 241 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NG 320 (520)
T TIGR03269 241 WLENGEIKEEGTPDEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSG 320 (520)
T ss_pred EEeCCEEeeecCHHHHHHHHHhhchhhccccccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCC
Confidence 111 1358999999999999999999999
Q ss_pred CCHHHHHHHHhCCcc--cchhhh
Q psy310 208 AGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 208 sGKSTLlk~l~G~~~--~~~~~~ 228 (240)
||||||+++|+|+.. .+++++
T Consensus 321 sGKSTLl~~l~Gl~~p~~G~i~~ 343 (520)
T TIGR03269 321 AGKTTLSKIIAGVLEPTSGEVNV 343 (520)
T ss_pred CCHHHHHHHHhCCCCCCCeEEEE
Confidence 999999999999943 456643
No 8
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=3.2e-31 Score=250.28 Aligned_cols=93 Identities=27% Similarity=0.399 Sum_probs=80.1
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhh-hhhceEE
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQF-RKLSCYI 106 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~-~~~~g~v 106 (240)
.-+|+.+.|+++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ... +..++|+
T Consensus 13 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 91 (510)
T PRK15439 13 CARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI-VPPDSGTLEIGGNPCARLTPAKAHQLGIYLV 91 (510)
T ss_pred EEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 357889999999999999999999999999999999999999999997 56789999999976532 111 2458999
Q ss_pred cccccccccccHHHHHHH
Q psy310 107 MQDNQLHANLTVEEAMNV 124 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~ 124 (240)
+|++.+++.+++.|++.+
T Consensus 92 ~q~~~~~~~~tv~e~l~~ 109 (510)
T PRK15439 92 PQEPLLFPNLSVKENILF 109 (510)
T ss_pred eccCccCCCCcHHHHhhc
Confidence 999998899999998765
No 9
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=3.1e-30 Score=244.52 Aligned_cols=93 Identities=25% Similarity=0.288 Sum_probs=73.9
Q ss_pred CCCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc---h---
Q psy310 32 NTNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL---S--- 97 (240)
Q Consensus 32 ~~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~---~--- 97 (240)
-.|+.+.|+. +++|+++||+|++||+++|+|||||||||||++|+|++++ +++|+|.++|.++.. .
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 87 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLR 87 (529)
T ss_pred EeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHH
Confidence 4567777753 5899999999999999999999999999999999998553 269999999987532 1
Q ss_pred hhh-hhceEEccccc--ccccccHHHHHHH
Q psy310 98 QFR-KLSCYIMQDNQ--LHANLTVEEAMNV 124 (240)
Q Consensus 98 ~~~-~~~g~v~Q~~~--~~~~ltv~e~l~~ 124 (240)
..+ +.++|++|++. +.+.+++.+++.+
T Consensus 88 ~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~ 117 (529)
T PRK15134 88 GVRGNKIAMIFQEPMVSLNPLHTLEKQLYE 117 (529)
T ss_pred HHhcCceEEEecCchhhcCchhhHHHHHHH
Confidence 112 46899999974 4556788887654
No 10
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=1.2e-30 Score=245.10 Aligned_cols=79 Identities=24% Similarity=0.247 Sum_probs=67.1
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ 108 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q 108 (240)
-+|+.+.|+++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|++|
T Consensus 6 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~-~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 84 (490)
T PRK10938 6 ISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE-LPLLSGERQSQFSHITRLSFEQLQKLVSDEWQ 84 (490)
T ss_pred EEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-CCCCCceEEECCcccccCCHHHHHHHhceecc
Confidence 35788899888899999999999999999999999999999999997 5678999999886542 1233456899999
Q ss_pred ccc
Q psy310 109 DNQ 111 (240)
Q Consensus 109 ~~~ 111 (240)
++.
T Consensus 85 ~~~ 87 (490)
T PRK10938 85 RNN 87 (490)
T ss_pred Ccc
Confidence 864
No 11
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=7.1e-30 Score=237.78 Aligned_cols=184 Identities=28% Similarity=0.369 Sum_probs=144.3
Q ss_pred eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC---CccEEEECCccCCc---h----hhhhhceEEccccc-
Q psy310 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG---TEGSITINGHERNL---S----QFRKLSCYIMQDNQ- 111 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~---~~G~V~v~g~~~~~---~----~~~~~~g~v~Q~~~- 111 (240)
.++++|||+|.+||++||||+|||||||++++|.|+++.+ .+|+|.++|.+... . ...+.++|+||+|.
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 6999999999999999999999999999999999985544 38999999985421 1 12367899999975
Q ss_pred -ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh--ccCCCCCchhhHHHHHHHHhcc--------
Q psy310 112 -LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC--FLSGPWGTFESSVLLALAMYNR-------- 180 (240)
Q Consensus 112 -~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------- 180 (240)
+.+.+++.+.+.-....+. .....+.++.+.++++.+++++.... ++...|++++|++++++++...
T Consensus 103 slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDE 180 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE 180 (539)
T ss_pred hcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECC
Confidence 4455777776665444432 22356667788889999999887665 8888999999998887653210
Q ss_pred --------------------------------------------------------------------------------
Q psy310 181 -------------------------------------------------------------------------------- 180 (240)
Q Consensus 181 -------------------------------------------------------------------------------- 180 (240)
T Consensus 181 PTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~ 260 (539)
T COG1123 181 PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPR 260 (539)
T ss_pred CccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHHHhhCCC
Confidence
Q ss_pred -----------------------------cc-----------cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 181 -----------------------------IH-----------EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 181 -----------------------------~~-----------~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
|. ...++++|||.|++||++||||++|||||||.|+|+|+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL 340 (539)
T COG1123 261 LGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340 (539)
T ss_pred cccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 00 12579999999999999999999999999999999999
Q ss_pred cccc--hhhh
Q psy310 221 KILR--QLWL 228 (240)
Q Consensus 221 ~~~~--~~~~ 228 (240)
..|+ .++|
T Consensus 341 ~~P~~G~i~~ 350 (539)
T COG1123 341 LPPSSGSIIF 350 (539)
T ss_pred CCCCCceEEE
Confidence 7765 3555
No 12
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=5.9e-30 Score=212.63 Aligned_cols=146 Identities=29% Similarity=0.400 Sum_probs=131.2
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC----CchhhhhhceEEc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER----NLSQFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~----~~~~~~~~~g~v~ 107 (240)
-+|+.++||+..+|++||++|.+||+++||||||||||||||||+++ ..+++|+|.++|.+. ....+|+.+|+||
T Consensus 5 i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L-E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF 83 (240)
T COG1126 5 IKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL-EEPDSGSITVDGEDVGDKKDILKLRRKVGMVF 83 (240)
T ss_pred EEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC-cCCCCceEEECCEeccchhhHHHHHHhcCeec
Confidence 36899999999999999999999999999999999999999999997 778999999999654 3456789999999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.+++++|+.||+.++.... ...++++.++.+.++++++++.++.+.++...|++++||+.+|+++...
T Consensus 84 Q~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 84 QQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred ccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence 9999999999999999876443 2456677788899999999999999999999999999999999999865
No 13
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.6e-29 Score=242.40 Aligned_cols=94 Identities=24% Similarity=0.239 Sum_probs=75.2
Q ss_pred CCCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC-------------
Q psy310 32 NTNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER------------- 94 (240)
Q Consensus 32 ~~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~------------- 94 (240)
-+|+.+.|+ ..++|++|||+|++||++|||||||||||||+++|+|+ .+|.+|.|.++|...
T Consensus 15 v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl-l~p~~G~i~~~g~~~~~~~~~~~~~~~~ 93 (623)
T PRK10261 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL-LEQAGGLVQCDKMLLRRRSRQVIELSEQ 93 (623)
T ss_pred EeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-CCCCCeEEEECCEEeccccccccccccC
Confidence 456777775 35799999999999999999999999999999999997 557899999987522
Q ss_pred Cc---hhhh-hhceEEcccc--cccccccHHHHHHHHH
Q psy310 95 NL---SQFR-KLSCYIMQDN--QLHANLTVEEAMNVAT 126 (240)
Q Consensus 95 ~~---~~~~-~~~g~v~Q~~--~~~~~ltv~e~l~~~~ 126 (240)
.. ...+ ..++||+|++ .+.+.+++.+++.+..
T Consensus 94 ~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~ 131 (623)
T PRK10261 94 SAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI 131 (623)
T ss_pred CHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHH
Confidence 10 1122 3689999998 5777899999987653
No 14
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.8e-29 Score=235.43 Aligned_cols=83 Identities=22% Similarity=0.379 Sum_probs=73.9
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
+|+++.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.+++. ..++|++|++.+
T Consensus 5 ~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-~~p~~G~i~~~~~--------~~i~~~~q~~~~ 75 (530)
T PRK15064 5 ANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD-LEPSAGNVSLDPN--------ERLGKLRQDQFA 75 (530)
T ss_pred EEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEecCC--------CEEEEEeccCCc
Confidence 5788889889999999999999999999999999999999999997 5678999999873 348999999888
Q ss_pred cccccHHHHHHH
Q psy310 113 HANLTVEEAMNV 124 (240)
Q Consensus 113 ~~~ltv~e~l~~ 124 (240)
+..+++.+++.+
T Consensus 76 ~~~~tv~e~l~~ 87 (530)
T PRK15064 76 FEEFTVLDTVIM 87 (530)
T ss_pred CCCCcHHHHHHH
Confidence 888898888764
No 15
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=8.2e-29 Score=236.15 Aligned_cols=84 Identities=31% Similarity=0.353 Sum_probs=74.7
Q ss_pred CCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310 32 NTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110 (240)
Q Consensus 32 ~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~ 110 (240)
-+|+++.|+ ++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.+.+. ..++||+|++
T Consensus 9 i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~-~~p~~G~i~~~~~--------~~i~~v~Q~~ 79 (556)
T PRK11819 9 MNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-DKEFEGEARPAPG--------IKVGYLPQEP 79 (556)
T ss_pred EeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEecCC--------CEEEEEecCC
Confidence 357888998 78999999999999999999999999999999999997 5678999998642 3589999999
Q ss_pred cccccccHHHHHHH
Q psy310 111 QLHANLTVEEAMNV 124 (240)
Q Consensus 111 ~~~~~ltv~e~l~~ 124 (240)
.+++.+|+.+++.+
T Consensus 80 ~~~~~~tv~e~l~~ 93 (556)
T PRK11819 80 QLDPEKTVRENVEE 93 (556)
T ss_pred CCCCCCcHHHHHHH
Confidence 98888999998865
No 16
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=223.02 Aligned_cols=195 Identities=25% Similarity=0.302 Sum_probs=143.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch----hhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS----QFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~----~~~~~~g~v~Q 108 (240)
.++.+.|++..+.++|||+|.+||+.||+|+||||||||+++|.|++ .|++|+|.++|+.+.+. ..+.-+|+|+|
T Consensus 8 ~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~-~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQ 86 (501)
T COG3845 8 RGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY-QPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQ 86 (501)
T ss_pred eccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc-cCCcceEEECCEEeccCCHHHHHHcCCcEEee
Confidence 46789999999999999999999999999999999999999999984 57999999999987542 34567899999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc--------
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR-------- 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 180 (240)
++.+.+.+||.||+.+.........++....++.++++.++.++.-..+......+-+++|++.+..+++..
T Consensus 87 HF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDE 166 (501)
T COG3845 87 HFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDE 166 (501)
T ss_pred ccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcC
Confidence 999999999999998654321112234444455566666665554433333333333333333332221110
Q ss_pred --------------------------------------------------------------------------------
Q psy310 181 -------------------------------------------------------------------------------- 180 (240)
Q Consensus 181 -------------------------------------------------------------------------------- 180 (240)
T Consensus 167 PTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMvG~~v~~~~ 246 (501)
T COG3845 167 PTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGREVVLRV 246 (501)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhcCCcccccc
Confidence
Q ss_pred ---------------------cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 ---------------------IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ---------------------~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
..+-..++++||+|++||+++|.|-.|.|.+.|+.+|+|++++ +.+++
T Consensus 247 ~~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l 317 (501)
T COG3845 247 VKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL 317 (501)
T ss_pred ccCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEE
Confidence 0012469999999999999999999999999999999999743 34544
No 17
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=3.6e-28 Score=231.58 Aligned_cols=84 Identities=30% Similarity=0.342 Sum_probs=74.6
Q ss_pred CCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310 32 NTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110 (240)
Q Consensus 32 ~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~ 110 (240)
-+|+.+.|+ ++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.+++ ...++|++|++
T Consensus 7 ~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~-~~p~~G~i~~~~--------~~~i~~v~Q~~ 77 (552)
T TIGR03719 7 MNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-DKEFNGEARPAP--------GIKVGYLPQEP 77 (552)
T ss_pred EeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEecC--------CCEEEEEeccC
Confidence 367888887 78899999999999999999999999999999999997 567899999865 23589999999
Q ss_pred cccccccHHHHHHH
Q psy310 111 QLHANLTVEEAMNV 124 (240)
Q Consensus 111 ~~~~~ltv~e~l~~ 124 (240)
.+++.+|+.|++.+
T Consensus 78 ~~~~~~tv~e~i~~ 91 (552)
T TIGR03719 78 QLDPTKTVRENVEE 91 (552)
T ss_pred CCCCCCcHHHHHHH
Confidence 88888999998865
No 18
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=3.1e-28 Score=217.88 Aligned_cols=145 Identities=24% Similarity=0.328 Sum_probs=129.2
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.||+..+++|+||+|++||+++|+||||||||||||+|+|+ ..|++|+|.++|.++. .++.++.+++|||+..
T Consensus 9 ~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf-e~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YA 87 (352)
T COG3842 9 RNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF-EQPSSGEILLDGEDITDVPPEKRPIGMVFQSYA 87 (352)
T ss_pred EeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEECCCCChhhcccceeecCcc
Confidence 5799999999999999999999999999999999999999999998 7789999999999874 4566789999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++||.||+.|... +.....+...++++.++++.+++.+...+.++..|++++|++.+|+++...
T Consensus 88 LFPHltV~~NVafGLk--~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 88 LFPHMTVEENVAFGLK--VRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPE 154 (352)
T ss_pred cCCCCcHHHHhhhhhh--hcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcC
Confidence 9999999999998754 223344556778899999999999999999999999999999999988754
No 19
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=6.1e-28 Score=227.27 Aligned_cols=83 Identities=33% Similarity=0.402 Sum_probs=72.7
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~ 110 (240)
+.+|+...++++++|+++||+|.+|+++||||+|||||||||++|+|. ..|++|+|.+.+. -.++|+.|++
T Consensus 5 ~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~-~~~~~G~i~~~~~--------~~v~~l~Q~~ 75 (530)
T COG0488 5 TLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGE-LEPDSGEVTRPKG--------LRVGYLSQEP 75 (530)
T ss_pred EEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCC-CcCCCCeEeecCC--------ceEEEeCCCC
Confidence 356899999999999999999999999999999999999999999997 5688999988652 3489999999
Q ss_pred cccccccHHHHH
Q psy310 111 QLHANLTVEEAM 122 (240)
Q Consensus 111 ~~~~~ltv~e~l 122 (240)
......|+.+.+
T Consensus 76 ~~~~~~tv~~~v 87 (530)
T COG0488 76 PLDPEKTVLDYV 87 (530)
T ss_pred CcCCCccHHHHH
Confidence 988877776543
No 20
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.1e-28 Score=236.64 Aligned_cols=59 Identities=27% Similarity=0.481 Sum_probs=55.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH 92 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~ 92 (240)
+|+++.|+++.+|+++||+|.+||++||||||||||||||++|+|+ .+|++|+|.+.+.
T Consensus 5 ~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~-~~pd~G~I~~~~~ 63 (638)
T PRK10636 5 SSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNE-ISADGGSYTFPGN 63 (638)
T ss_pred EEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEecCC
Confidence 5789999999999999999999999999999999999999999997 5688999999874
No 21
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.6e-27 Score=210.96 Aligned_cols=144 Identities=26% Similarity=0.334 Sum_probs=129.8
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.||+..+++++||+|++||+++|+||||||||||||+|+|+ ..|++|+|.++|.++. ..+..+.++||||++.
T Consensus 7 ~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL-e~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yA 85 (338)
T COG3839 7 KNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL-EEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYA 85 (338)
T ss_pred eeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEECCCCChhHCCEEEEeCCcc
Confidence 6889999998899999999999999999999999999999999997 7789999999999875 3566789999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++++|||++|+.+..... ...+....++++++.+.+++.+...+.+...|++++|++.++++++..
T Consensus 86 LyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~ 151 (338)
T COG3839 86 LYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK 151 (338)
T ss_pred ccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcC
Confidence 999999999999986543 345667788888899999999999999999999999999999999876
No 22
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.7e-27 Score=202.30 Aligned_cols=142 Identities=24% Similarity=0.345 Sum_probs=125.6
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
.++.+.|+...+|+++||+|.+||+++||||||||||||||+|+|+ ..|.+|+|.++|..+ ......++||||++.+
T Consensus 7 ~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL-~~p~~G~V~~~g~~v--~~p~~~~~~vFQ~~~L 83 (248)
T COG1116 7 EGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL-EKPTSGEVLLDGRPV--TGPGPDIGYVFQEDAL 83 (248)
T ss_pred EeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCccc--CCCCCCEEEEeccCcc
Confidence 5788999999999999999999999999999999999999999997 678999999999876 2345678999999999
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++-.|+.+|+.+..... ...+.+..+.++++++.+++.+....++...|++++|++.+++++...
T Consensus 84 lPW~Tv~~NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 84 LPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cchhhHHhhheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcC
Confidence 99999999999875443 134455566899999999999999999999999999999999999875
No 23
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=8.1e-27 Score=225.56 Aligned_cols=60 Identities=25% Similarity=0.348 Sum_probs=55.1
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH 92 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~ 92 (240)
-+|+++.++++++|+++||+|++||++||+|||||||||||++|+|+ .+|++|+|.+.+.
T Consensus 6 i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~-~~p~~G~I~~~~~ 65 (635)
T PRK11147 6 IHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE-VLLDDGRIIYEQD 65 (635)
T ss_pred EeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC-CCCCCeEEEeCCC
Confidence 35788999999999999999999999999999999999999999997 5678999999763
No 24
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.94 E-value=1.4e-26 Score=207.14 Aligned_cols=195 Identities=24% Similarity=0.273 Sum_probs=148.9
Q ss_pred CCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC----CccEEEECCccCCc---hhhh-
Q psy310 33 TNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITINGHERNL---SQFR- 100 (240)
Q Consensus 33 ~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~----~~G~V~v~g~~~~~---~~~~- 100 (240)
.|.+.+|+ ...++++|||+|++||.++|||+||||||-.+..|+++++.+ .+|+|.++|.+.-. .+++
T Consensus 10 ~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~ 89 (534)
T COG4172 10 RNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRG 89 (534)
T ss_pred eccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhh
Confidence 45666666 788999999999999999999999999999999999986543 37999999987631 2222
Q ss_pred ---hhceEEcccccc--cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh---ccCCCCCchhhHHH
Q psy310 101 ---KLSCYIMQDNQL--HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC---FLSGPWGTFESSVL 172 (240)
Q Consensus 101 ---~~~g~v~Q~~~~--~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~ 172 (240)
..++++||+|.. .+-.++...+..... ...++.+.+.+.++.++++.+++.+...+ ++...++++.|+++
T Consensus 90 iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~--~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVM 167 (534)
T COG4172 90 VRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR--LHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVM 167 (534)
T ss_pred hcccceEEEecccccccCcHhHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHH
Confidence 478999999863 344566555443332 33456667777788889999998766544 56667888899988
Q ss_pred HHHHHhccc-----------------------------------------------------------------------
Q psy310 173 LALAMYNRI----------------------------------------------------------------------- 181 (240)
Q Consensus 173 ~~~~~~~~~----------------------------------------------------------------------- 181 (240)
+++++.+..
T Consensus 168 IAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 168 IAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247 (534)
T ss_pred HHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence 877643210
Q ss_pred --------------------------------------------------ccceeeccceeEEeCCcEEEEEcCCCCCHH
Q psy310 182 --------------------------------------------------HEKTILKSVSGRLRSGELTAIMGPSGAGKS 211 (240)
Q Consensus 182 --------------------------------------------------~~~~il~~vsl~I~~Ge~valvG~NGsGKS 211 (240)
+...+++++||++++|+.++|||++|||||
T Consensus 248 ~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKs 327 (534)
T COG4172 248 APQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKS 327 (534)
T ss_pred CCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcc
Confidence 012489999999999999999999999999
Q ss_pred HHHHHHhCC-cccchhhhc
Q psy310 212 TLLNILTGY-KILRQLWLL 229 (240)
Q Consensus 212 TLlk~l~G~-~~~~~~~~~ 229 (240)
||.++|.++ ...+++||.
T Consensus 328 TlG~allrL~~s~G~I~F~ 346 (534)
T COG4172 328 TLGLALLRLIPSQGEIRFD 346 (534)
T ss_pred hHHHHHHhhcCcCceEEEC
Confidence 999999998 444688874
No 25
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.7e-26 Score=213.79 Aligned_cols=120 Identities=28% Similarity=0.312 Sum_probs=96.5
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch----hhhhhceEEc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS----QFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~----~~~~~~g~v~ 107 (240)
-.|+.+.|++.++|++|||+|++||+++|+|+||||||||+|+|+|. .+|++|+|.++|....+. ....-+..|+
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv-~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV-YPPDSGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc-ccCCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 46899999999999999999999999999999999999999999998 458999999999877542 2235678999
Q ss_pred ccccccccccHHHHHHHHHHHhc-CCCccHHHHHHHHHHhhhcCCc
Q psy310 108 QDNQLHANLTVEEAMNVATALKL-GKDLTKAARKDVVRTLFYRSDT 152 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~-~~~l~~~~~~~~~~~l~~~~~~ 152 (240)
|+..+.+.+||.||+.+...... ...++.....+.+++++..++.
T Consensus 90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~ 135 (500)
T COG1129 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGL 135 (500)
T ss_pred echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCC
Confidence 99999999999999986543222 1234555556666666665544
No 26
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=201.13 Aligned_cols=144 Identities=29% Similarity=0.314 Sum_probs=127.9
Q ss_pred CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhh
Q psy310 33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRK 101 (240)
Q Consensus 33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~ 101 (240)
+++++.|.. ..++++|||+|++||++||||.||||||||+|+|+++ ..|++|+|.++|.++. +++.|+
T Consensus 5 ~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L-e~PtsG~v~v~G~di~~l~~~~Lr~~R~ 83 (339)
T COG1135 5 ENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL-ERPTSGSVFVDGQDLTALSEAELRQLRQ 83 (339)
T ss_pred EeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc-CCCCCceEEEcCEecccCChHHHHHHHh
Confidence 356666665 5799999999999999999999999999999999997 7789999999997653 456789
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+||+||++.++...||++|++++..+. ..++..++.++.++++.+++.+..+.++...|++++|++.+|++++..
T Consensus 84 ~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 84 KIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred hccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 9999999999999999999999986654 256778888999999999999999999999999999999999999875
No 27
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=5.5e-26 Score=192.96 Aligned_cols=199 Identities=22% Similarity=0.259 Sum_probs=157.2
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ 108 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q 108 (240)
-.|+++.|+++.+++++||+|++||+++|||||||||||+||+|+++ ..|++|+|.++|.+.. ...+|+.+|||-|
T Consensus 4 ~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL-iept~G~I~i~g~~i~~~d~~~LRr~IGYviQ 82 (309)
T COG1125 4 FENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL-IEPTSGEILIDGEDISDLDPVELRRKIGYVIQ 82 (309)
T ss_pred eeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc-cCCCCceEEECCeecccCCHHHHHHhhhhhhh
Confidence 36899999999999999999999999999999999999999999997 5689999999998764 3567899999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc--hhhhhccCCCCCchhhHHHHHHHHhccc-----
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN--HAQRCFLSGPWGTFESSVLLALAMYNRI----- 181 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 181 (240)
.-.+++++|+.||+..-..+. ..+++..+++++++++.++++ +...++++..|++++|++-+++++....
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred hcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence 999999999999998765443 346677788899999999886 4678888899999999988887765421
Q ss_pred -------------------------ccce---eeccceeEEeCCcEEEEEcCCCC-------------CHHHHHHHHhCC
Q psy310 182 -------------------------HEKT---ILKSVSGRLRSGELTAIMGPSGA-------------GKSTLLNILTGY 220 (240)
Q Consensus 182 -------------------------~~~~---il~~vsl~I~~Ge~valvG~NGs-------------GKSTLlk~l~G~ 220 (240)
-+++ +=+|++=.++=|++++++. .|- =++-|++.+.|-
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~ 238 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGE 238 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhcc
Confidence 0222 2377777788899999998 222 157788888886
Q ss_pred cccchhhhccCChhh
Q psy310 221 KILRQLWLLEYSHKD 235 (240)
Q Consensus 221 ~~~~~~~~~~~~~~~ 235 (240)
-.+..-|+...+-++
T Consensus 239 ~~~~~~~l~~~~~~~ 253 (309)
T COG1125 239 SERGLRLLSLVSVAD 253 (309)
T ss_pred ccccccccchhhHHH
Confidence 433333334444333
No 28
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.94 E-value=2.6e-26 Score=187.42 Aligned_cols=144 Identities=28% Similarity=0.338 Sum_probs=126.8
Q ss_pred CCceecCCCce-eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhhhceE
Q psy310 33 TNNNCEPNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRKLSCY 105 (240)
Q Consensus 33 ~~~~~~~~~~~-~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~~~g~ 105 (240)
.|+.++|+.-+ +|+||||+|++||++-|+||||||||||||+|.+. ..|..|+|.++|+++. .+-+|+.+|+
T Consensus 5 ~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~-e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGv 83 (223)
T COG2884 5 ENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE-ERPTRGKILVNGHDLSRLKGREIPFLRRQIGV 83 (223)
T ss_pred hhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh-hcCCCceEEECCeecccccccccchhhheeee
Confidence 46777777644 99999999999999999999999999999999997 6789999999998863 3457899999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
||||..++++.|+.||++++.... +......++.+.++++.+++.+....+++..|++++|++.+|+++++.
T Consensus 84 VFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~ 155 (223)
T COG2884 84 VFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQ 155 (223)
T ss_pred EeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccC
Confidence 999999999999999999876543 335567788888999999999999999999999999999999999875
No 29
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=1.4e-25 Score=189.69 Aligned_cols=144 Identities=30% Similarity=0.348 Sum_probs=117.7
Q ss_pred CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhh-hh
Q psy310 33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQF-RK 101 (240)
Q Consensus 33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~-~~ 101 (240)
+|+.+.|+. ..+|+++||+|++||+++|+|||||||||||.+|.|+ ..|++|.|.++|.+... ..+ ++
T Consensus 5 ~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l-d~pt~G~v~i~g~d~~~l~~~~~~~~R~~ 83 (226)
T COG1136 5 KNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL-DKPTSGEVLINGKDLTKLSEKELAKLRRK 83 (226)
T ss_pred eeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cCCCCceEEECCEEcCcCCHHHHHHHHHH
Confidence 455665543 4799999999999999999999999999999999997 66799999999977642 122 46
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhh-hccCCCCCchhhHHHHHHHHhcc
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR-CFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+|||||+..+.+.+|+.||+.++..+.. .......+.+..+++.+++.+... .++...|++++||+.+|+++...
T Consensus 84 ~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 84 KIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred hEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 79999999999999999999998764432 122245677888889999986665 67778999999999999999875
No 30
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.93 E-value=2.6e-26 Score=197.68 Aligned_cols=171 Identities=23% Similarity=0.279 Sum_probs=138.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQD 109 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~ 109 (240)
+|++..|+++++++++||+|++||+++|+||||||||||||+|+|+ .+|.+|+|.++|+++. ..++++.++||+|.
T Consensus 6 ~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~-l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~ 84 (258)
T COG1120 6 ENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL-LKPKSGEVLLDGKDIASLSPKELAKKLAYVPQS 84 (258)
T ss_pred EEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc-CCCCCCEEEECCCchhhcCHHHHhhhEEEeccC
Confidence 5789999999999999999999999999999999999999999997 5688999999998763 45678899999999
Q ss_pred ccccccccHHHHHHHHHHHhcCCC-ccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccc------
Q psy310 110 NQLHANLTVEEAMNVATALKLGKD-LTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIH------ 182 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 182 (240)
+.....++|.|.+.+...-+.... ...++..+.+.+.++.+++.+...+.....|++++|++.+|+++++..+
T Consensus 85 ~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDE 164 (258)
T COG1120 85 PSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDE 164 (258)
T ss_pred CCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCC
Confidence 988899999998886543222111 1123334577888999999999999999999999999999998876311
Q ss_pred ------------------------cc---eeeccceeEEeCCcEEEEEc
Q psy310 183 ------------------------EK---TILKSVSGRLRSGELTAIMG 204 (240)
Q Consensus 183 ------------------------~~---~il~~vsl~I~~Ge~valvG 204 (240)
+. .+++|+++..+-.+++.++-
T Consensus 165 PTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 165 PTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLK 213 (258)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 12 37899998777777666654
No 31
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1e-25 Score=195.62 Aligned_cols=147 Identities=25% Similarity=0.330 Sum_probs=127.7
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc---cCCc-hhhhhhceEEc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNL-SQFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~---~~~~-~~~~~~~g~v~ 107 (240)
-.|+++.++...+++||+++|+.||.++|+||||||||||||+|+|+ ..|++|+|.++|+ |... ....+.+||||
T Consensus 5 i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL-e~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvF 83 (345)
T COG1118 5 INNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGL-ETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVF 83 (345)
T ss_pred ehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCc-CCCCCceEEECCEeccchhccchhhcceeEEE
Confidence 46789999999999999999999999999999999999999999997 6789999999998 5533 44568899999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|+..++++|||.+|++|..... ....++...+..+.+++..+.+.+...+++...+++++|++.+++++...
T Consensus 84 Q~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~e 155 (345)
T COG1118 84 QHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVE 155 (345)
T ss_pred echhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcC
Confidence 9999999999999999976443 22334556677888899999999999999999999999999999998754
No 32
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=4.9e-25 Score=194.77 Aligned_cols=145 Identities=27% Similarity=0.338 Sum_probs=125.1
Q ss_pred CCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcc
Q psy310 32 NTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQ 108 (240)
Q Consensus 32 ~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q 108 (240)
-.|+.+.++ .+.+|++|||+|++||++||+||||||||||+|+|+|+ ..|++|+|.+.|.+... ...++.+||++|
T Consensus 7 ~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl-~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~ 85 (293)
T COG1131 7 VRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL-LKPTSGEILVLGYDVVKEPAKVRRRIGYVPQ 85 (293)
T ss_pred ecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-cCCCceEEEEcCEeCccCHHHHHhheEEEcc
Confidence 468999999 79999999999999999999999999999999999997 56799999999987643 466788999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+|++|++.+...++... .....+.++++++.+++.+.........|.++++++.++.++...
T Consensus 86 ~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~ 154 (293)
T COG1131 86 EPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD 154 (293)
T ss_pred CCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence 999999999999999877665322 134456788899999988865666778899999999999999876
No 33
>PRK13409 putative ATPase RIL; Provisional
Probab=99.93 E-value=1.9e-25 Score=214.01 Aligned_cols=65 Identities=25% Similarity=0.351 Sum_probs=56.4
Q ss_pred CcccCCCceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEE-----------ECCccC
Q psy310 28 NTNTNTNNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSIT-----------INGHER 94 (240)
Q Consensus 28 ~~~~~~~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~-----------v~g~~~ 94 (240)
-.+-.+++..+|+.. .+|++++ .+++||++||+|||||||||||++|+|+ .+|+.|+|. +.|.++
T Consensus 72 p~~~~~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~-l~p~~G~i~~~~~~~~~~~~~~G~~l 148 (590)
T PRK13409 72 PEELEEEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGE-LIPNLGDYEEEPSWDEVLKRFRGTEL 148 (590)
T ss_pred chhhccCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCC-ccCCCccccCCCcHHHHHHHhCChHH
Confidence 345567788999875 6999999 9999999999999999999999999997 567899997 778765
No 34
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6.7e-25 Score=184.55 Aligned_cols=146 Identities=29% Similarity=0.275 Sum_probs=120.2
Q ss_pred CCceecC-CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhhhceE
Q psy310 33 TNNNCEP-NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRKLSCY 105 (240)
Q Consensus 33 ~~~~~~~-~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~~~g~ 105 (240)
+|+++.| +++.+|++|||+|++||+|+|||+||||||||||+|+|+ ..+.+|+|.++|.+.. .+.+++.+||
T Consensus 7 ~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGm 85 (258)
T COG3638 7 KNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-VDPTSGEILFNGVQITKLKGKELRKLRRDIGM 85 (258)
T ss_pred eeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-cCCCcceEEecccchhccchHHHHHHHHhcee
Confidence 6788899 999999999999999999999999999999999999997 6678999999997652 3566789999
Q ss_pred EcccccccccccHHHHHHHHHHHhc------CCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKL------GKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~------~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+||++.+.+.++|.+|+.....-+. -...+++ .+..+-..++++++.+..-...+..|++++||+.+++++++
T Consensus 86 IfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~-dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q 164 (258)
T COG3638 86 IFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE-DKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ 164 (258)
T ss_pred EeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHH-HHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence 9999999999999999886532111 1122333 34455567888999888877778889999999999999877
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 165 ~ 165 (258)
T COG3638 165 Q 165 (258)
T ss_pred C
Confidence 4
No 35
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=1.2e-24 Score=183.52 Aligned_cols=146 Identities=27% Similarity=0.313 Sum_probs=126.9
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhhhceE
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRKLSCY 105 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~~~g~ 105 (240)
-+++..++|++.++++++|+|++||+++|+||||||||||||+|.|+ ..|++|+|.++|.++. ....++.+|+
T Consensus 11 vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl-l~P~~GeI~i~G~~i~~ls~~~~~~ir~r~Gv 89 (263)
T COG1127 11 VRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL-LRPDKGEILIDGEDIPQLSEEELYEIRKRMGV 89 (263)
T ss_pred EeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc-CCCCCCeEEEcCcchhccCHHHHHHHHhheeE
Confidence 46788999999999999999999999999999999999999999998 6689999999998763 2345788999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+||...++..++|+||+.+...-+ ..+++...++.+..-++.+++... ...+++..++++.+++.+|++++..
T Consensus 90 lFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 90 LFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred EeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 999999999999999999875433 246677777777777888888877 7778889999999999999999865
No 36
>PLN03073 ABC transporter F family; Provisional
Probab=99.92 E-value=6e-25 Score=214.39 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=54.0
Q ss_pred ccCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC--CCCCccEEEECCc
Q psy310 30 NTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--TSGTEGSITINGH 92 (240)
Q Consensus 30 ~~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~--~~~~~G~V~v~g~ 92 (240)
-.-.|+++.|+++++|+++||+|.+||++||||+||||||||||+|+|.. ..|.+|+|.+.++
T Consensus 178 I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred EEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 44568999999999999999999999999999999999999999999953 1356789876443
No 37
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.7e-24 Score=185.65 Aligned_cols=177 Identities=25% Similarity=0.332 Sum_probs=132.1
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~ 111 (240)
-.|+.+.|+.+++|++|||+|++|++++||||||||||||+|+|.|+ ..|.+|+|.+.|........+.++|||||...
T Consensus 7 v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl-l~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~ 85 (254)
T COG1121 7 VENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL-LKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSS 85 (254)
T ss_pred EeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CcCCcceEEEccccccccccCCeEEEcCcccc
Confidence 35788889876899999999999999999999999999999999997 56889999999976543333468999999764
Q ss_pred cc--ccccHHHHHHHHHHHhcC--CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceee
Q psy310 112 LH--ANLTVEEAMNVATALKLG--KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTIL 187 (240)
Q Consensus 112 ~~--~~ltv~e~l~~~~~~~~~--~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 187 (240)
+. .-.||+|.+......+.+ ....+ ..++.++++++++++.+...+.+...|+++.|++.+|++++... +-.+|
T Consensus 86 ~d~~fP~tV~d~V~~g~~~~~g~~~~~~~-~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p-~lllL 163 (254)
T COG1121 86 VDRSFPITVKDVVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNP-DLLLL 163 (254)
T ss_pred cCCCCCcCHHHHHHccCcccccccccccH-HHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCC-CEEEe
Confidence 33 346899988764322111 11222 33677888999999999999999999999999999999998862 22333
Q ss_pred ccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 188 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 188 ~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
+...-.|.. .+...++++|..++.
T Consensus 164 DEP~~gvD~-----------~~~~~i~~lL~~l~~ 187 (254)
T COG1121 164 DEPFTGVDV-----------AGQKEIYDLLKELRQ 187 (254)
T ss_pred cCCcccCCH-----------HHHHHHHHHHHHHHH
Confidence 433333322 155666666666543
No 38
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.91 E-value=6e-24 Score=192.32 Aligned_cols=144 Identities=26% Similarity=0.342 Sum_probs=123.0
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.++. ....++.++||||++.
T Consensus 8 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl-~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~ 86 (353)
T TIGR03265 8 DNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL-ERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYA 86 (353)
T ss_pred EEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-CCCCceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence 5788899988999999999999999999999999999999999997 6688999999998763 2334678999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+|+.|++.+..... ...+......++++++.+++.+...+.....|++++|++.++++++..
T Consensus 87 lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~ 152 (353)
T TIGR03265 87 LFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATS 152 (353)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999998764321 233444566778889999998888888888999999999999999875
No 39
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6.1e-24 Score=192.45 Aligned_cols=144 Identities=22% Similarity=0.277 Sum_probs=121.9
Q ss_pred CCceecC-CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEcccc
Q psy310 33 TNNNCEP-NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~-~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~ 110 (240)
+|+.+.+ +++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++. ....++.++||||++
T Consensus 7 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl-~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~ 85 (356)
T PRK11650 7 QAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL-ERITSGEIWIGGRVVNELEPADRDIAMVFQNY 85 (356)
T ss_pred EeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC-CCCCceEEEECCEECCCCCHHHCCEEEEeCCc
Confidence 5788888 788999999999999999999999999999999999997 6689999999998763 233457899999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++.+|+.|++.+..... ........+.+.++++.+++.+...+.+...|++++|++.++++++..
T Consensus 86 ~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~ 152 (356)
T PRK11650 86 ALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVRE 152 (356)
T ss_pred cccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999999998764321 233444456678888989998888888888999999999999999875
No 40
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.91 E-value=8.2e-24 Score=188.05 Aligned_cols=145 Identities=26% Similarity=0.313 Sum_probs=119.9
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEccc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQD 109 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~ 109 (240)
-+|+.+.|++..+|+++||+|++||++||+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|+
T Consensus 10 i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl-~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~ 88 (306)
T PRK13537 10 FRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-THPDAGSISLCGEPVPSRARHARQRVGVVPQF 88 (306)
T ss_pred EEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEecccchHHHHhcEEEEecc
Confidence 46889999999999999999999999999999999999999999997 56889999999987532 2356789999999
Q ss_pred ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+++.+|+.|++.+..... ........+.+.++++.+++.+.........|.++++++.+++++.+.
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 89 DNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVND 156 (306)
T ss_pred CcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence 99999999999998644322 123333345567788888887777777778899999999999999875
No 41
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=9.8e-24 Score=190.74 Aligned_cols=144 Identities=23% Similarity=0.376 Sum_probs=122.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++.. ...++.++||||++.
T Consensus 10 ~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~ 88 (351)
T PRK11432 10 KNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL-EKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYA 88 (351)
T ss_pred EeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC-CCCCceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence 5788889888999999999999999999999999999999999997 66889999999987632 234578999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+|+.|++.+..... ...+....+.+.++++.+++.+...+.....|++++|++.++++++..
T Consensus 89 lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~ 154 (351)
T PRK11432 89 LFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILK 154 (351)
T ss_pred cCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999999998864321 233445566778888888888877777888899999999999999875
No 42
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.5e-23 Score=179.14 Aligned_cols=145 Identities=26% Similarity=0.349 Sum_probs=116.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceEE
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCYI 106 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~v 106 (240)
+|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|+
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v 82 (235)
T cd03261 4 RGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL-LRPDSGEVLIDGEDISGLSEAELYRLRRRMGML 82 (235)
T ss_pred EEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEccccChhhHHHHhcceEEE
Confidence 4678888888999999999999999999999999999999999997 56789999999976532 2345679999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++.+++.+|+.+++.+..... .........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus 83 ~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~ 154 (235)
T cd03261 83 FQSGALFDSLTVFENVAFPLREH--TRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALD 154 (235)
T ss_pred ccCcccCCCCcHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999988899999987653221 1122333345567778888887666666677889999999999999875
No 43
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.7e-24 Score=176.34 Aligned_cols=145 Identities=23% Similarity=0.270 Sum_probs=126.1
Q ss_pred CCCceecCCCce-eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC--CchhhhhhceEEcc
Q psy310 32 NTNNNCEPNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER--NLSQFRKLSCYIMQ 108 (240)
Q Consensus 32 ~~~~~~~~~~~~-~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~--~~~~~~~~~g~v~Q 108 (240)
-+++.+.|+... +++||||+++.||++||+|||||||||+||+|+++ ..|++|.|.++|.+. .+...++.+|+++.
T Consensus 4 v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl-L~P~~G~v~idg~d~~~~p~~vrr~IGVl~~ 82 (245)
T COG4555 4 VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL-LIPDSGKVTIDGVDTVRDPSFVRRKIGVLFG 82 (245)
T ss_pred eeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh-ccCCCceEEEeecccccChHHHhhhcceecC
Confidence 356778888876 99999999999999999999999999999999998 568999999999876 34557899999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+..++..+|++|++.+-..+. ++.....+.++..+.+++++.+..++...+.|.+++|++.+|+++++.
T Consensus 83 e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 83 ERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred CcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 999999999999998765543 345556677788899999999888888888999999999999999886
No 44
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.91 E-value=1.7e-23 Score=190.59 Aligned_cols=146 Identities=18% Similarity=0.278 Sum_probs=122.9
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQD 109 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~ 109 (240)
.-+|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++. ....++.++||||+
T Consensus 16 ~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl-~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 94 (375)
T PRK09452 16 ELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-ETPDSGRIMLDGQDITHVPAENRHVNTVFQS 94 (375)
T ss_pred EEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCEECCCCCHHHCCEEEEecC
Confidence 346889999998999999999999999999999999999999999997 5678999999998763 23345789999999
Q ss_pred ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+++.+++.|++.+..... .......++.+.++++.+++.+.....+...|++++|++.++++++..
T Consensus 95 ~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 95 YALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred cccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999999998764321 223444455677788888888877778888899999999999999875
No 45
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.5e-23 Score=176.17 Aligned_cols=144 Identities=24% Similarity=0.323 Sum_probs=116.2
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~ 110 (240)
+|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|++
T Consensus 4 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (220)
T cd03265 4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL-LKPTSGRATVAGHDVVREPREVRRRIGIVFQDL 82 (220)
T ss_pred EEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEecCcChHHHhhcEEEecCCc
Confidence 4778888888999999999999999999999999999999999997 56789999999976431 23456799999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++.+++.+++.+..... ........+.+.++++.+++.+.....+...|+++++++.+++++...
T Consensus 83 ~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 83 SVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred cccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9888899999987654322 122223345567788888887666666677889999999999999875
No 46
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=1.8e-24 Score=177.92 Aligned_cols=147 Identities=24% Similarity=0.337 Sum_probs=124.1
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchh----hhhhceEEc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ----FRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~----~~~~~g~v~ 107 (240)
-.|+.+.|+.++++++|||+|++||+|||+|||||||||.+-++.|+ .+|++|.|.+++.++...+ .+.-+||++
T Consensus 7 a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl-v~~d~G~i~ld~~diT~lPm~~RArlGigYLp 85 (243)
T COG1137 7 AENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL-VRPDSGKILLDDEDITKLPMHKRARLGIGYLP 85 (243)
T ss_pred ehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEE-EecCCceEEECCcccccCChHHHhhcCccccc
Confidence 46788999999999999999999999999999999999999999997 6689999999999875322 345689999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.++..+||++|++....... .......+++.+.++++.+.+.|.....-...|++++.++.+|+++...
T Consensus 86 QE~SIFr~LtV~dNi~~vlE~~~-~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 86 QEASIFRKLTVEDNIMAVLEIRE-KDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred ccchHhhcCcHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 99999999999999987644332 1233345566778899999999988887777899999999999998764
No 47
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.91 E-value=2.6e-23 Score=175.56 Aligned_cols=144 Identities=31% Similarity=0.395 Sum_probs=114.0
Q ss_pred CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-h-----h-hhh
Q psy310 33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-S-----Q-FRK 101 (240)
Q Consensus 33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~-----~-~~~ 101 (240)
+|+.+.+++ +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... . . .++
T Consensus 4 ~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (218)
T cd03255 4 KNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL-DRPTSGEVRVDGTDISKLSEKELAAFRRR 82 (218)
T ss_pred eeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC-cCCCceeEEECCEehhhcchhHHHHHHhh
Confidence 467777776 7899999999999999999999999999999999997 56789999999976532 1 1 245
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.++|++|++.+++.+++.|++.+..... ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus 83 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (218)
T cd03255 83 HIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAND 158 (218)
T ss_pred cEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccC
Confidence 7999999999988899999988754321 112223344566778888887666666677889999999999999875
No 48
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.5e-23 Score=175.20 Aligned_cols=144 Identities=26% Similarity=0.336 Sum_probs=115.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++.
T Consensus 4 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 82 (213)
T cd03259 4 KGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL-ERPDSGEILIDGRDVTGVPPERRNIGMVFQDYA 82 (213)
T ss_pred eeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECCEEcCcCchhhccEEEEcCchh
Confidence 4678888888999999999999999999999999999999999997 56789999999976532 223467899999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+++.+++.+..... ........+.+.+++..+++.+.........|++++|++.+++++...
T Consensus 83 ~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 83 LFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred hccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 888899999987653221 122233344567778888887666666677889999999999999875
No 49
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.91 E-value=2.5e-23 Score=188.81 Aligned_cols=144 Identities=22% Similarity=0.323 Sum_probs=122.2
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCc--cEEEECCccCC-chhhhhhceEEccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE--GSITINGHERN-LSQFRKLSCYIMQD 109 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~--G~V~v~g~~~~-~~~~~~~~g~v~Q~ 109 (240)
+|+.+.|+.+.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++ |+|.++|.+.. ....++.++||||+
T Consensus 9 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~ 87 (362)
T TIGR03258 9 DHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF-VKAAGLTGRIAIADRDLTHAPPHKRGLALLFQN 87 (362)
T ss_pred EEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCEEEEECCEECCCCCHHHCCEEEEECC
Confidence 5788899988999999999999999999999999999999999997 66789 99999998763 22345779999999
Q ss_pred ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+++.+|++|++.+..... ........+.+.++++.+++.+...+.+...|++++|++.++++++..
T Consensus 88 ~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 88 YALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred cccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999999998764322 233444556678888888988888888888999999999999999875
No 50
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=2.6e-23 Score=187.34 Aligned_cols=144 Identities=24% Similarity=0.272 Sum_probs=118.7
Q ss_pred CCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhh
Q psy310 33 TNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKL 102 (240)
Q Consensus 33 ~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~ 102 (240)
+|+++.|+ ..++|+++||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|.++.. ...++.
T Consensus 5 ~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl-~~p~~G~I~i~G~~i~~~~~~~l~~~r~~ 83 (343)
T TIGR02314 5 SNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-ERPTSGSVIVDGQDLTTLSNSELTKARRQ 83 (343)
T ss_pred EEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence 46677774 24799999999999999999999999999999999997 66889999999987632 124668
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|+||++.+++..|+.+++.+..... ...+....+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus 84 Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~ 158 (343)
T TIGR02314 84 IGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASN 158 (343)
T ss_pred EEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999998754322 223444556677888989998888888888999999999999999875
No 51
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.90 E-value=2.7e-23 Score=188.05 Aligned_cols=147 Identities=25% Similarity=0.334 Sum_probs=121.0
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++. ....++.++||||++.
T Consensus 6 ~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~ 84 (353)
T PRK10851 6 ANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL-EHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA 84 (353)
T ss_pred EEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHCCEEEEecCcc
Confidence 4678888888999999999999999999999999999999999997 5688999999998763 2234567999999999
Q ss_pred ccccccHHHHHHHHHHHhcC-CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLG-KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+++.|++.+....... .........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus 85 l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~ 154 (353)
T PRK10851 85 LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVE 154 (353)
T ss_pred cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999999876432100 1223344456778888888888877777788899999999999999875
No 52
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.90 E-value=3.3e-23 Score=174.82 Aligned_cols=167 Identities=17% Similarity=0.259 Sum_probs=126.6
Q ss_pred CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhce
Q psy310 33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSC 104 (240)
Q Consensus 33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g 104 (240)
+|+.+.+++ +++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+... ...++.++
T Consensus 5 ~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 83 (216)
T TIGR00960 5 EQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI-EKPTRGKIRFNGQDLTRLRGREIPFLRRHIG 83 (216)
T ss_pred EEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEehhhcChhHHHHHHHhce
Confidence 466777754 4799999999999999999999999999999999997 56789999999976521 12456799
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccc
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEK 184 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (240)
|++|++.+++.+++.|++.+..... ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus 84 ~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~---- 156 (216)
T TIGR00960 84 MVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHK---- 156 (216)
T ss_pred EEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC----
Confidence 9999999888899999988653321 122223345567778888887766666677889999999999999875
Q ss_pred eeeccceeEEeCCcEEEEEcCCCC-----CHHHHHHHHhCC
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGA-----GKSTLLNILTGY 220 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGs-----GKSTLlk~l~G~ 220 (240)
..+.|+.++-+ .+..+.++|.-+
T Consensus 157 -------------p~llllDEPt~~LD~~~~~~l~~~l~~~ 184 (216)
T TIGR00960 157 -------------PPLLLADEPTGNLDPELSRDIMRLFEEF 184 (216)
T ss_pred -------------CCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 23555555554 455566666554
No 53
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.1e-23 Score=189.06 Aligned_cols=145 Identities=24% Similarity=0.318 Sum_probs=122.8
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEcccc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDN 110 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~ 110 (240)
-+|+.+.+++..+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.++. ....++.++||||++
T Consensus 22 l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~ 100 (377)
T PRK11607 22 IRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF-EQPTAGQIMLDGVDLSHVPPYQRPINMMFQSY 100 (377)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCEECCCCCHHHCCEEEEeCCC
Confidence 36888899888999999999999999999999999999999999997 6688999999998753 234567899999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++.+|+.||+.+..... ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus 101 ~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 101 ALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred ccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999999998764322 223444556677888888888887788888999999999999999875
No 54
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.9e-23 Score=173.70 Aligned_cols=143 Identities=19% Similarity=0.270 Sum_probs=114.6
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
+|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+... ..++.++|++|++.+
T Consensus 4 ~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~ 81 (210)
T cd03269 4 ENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI-ILPDSGEVLFDGKPLDI-AARNRIGYLPEERGL 81 (210)
T ss_pred EEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCCchhH-HHHccEEEeccCCcC
Confidence 4677788888899999999999999999999999999999999997 56789999999986532 345679999999998
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.|++.+..... ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus 82 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 82 YPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 88899999987643221 122233345567777878877665566667889999999999999875
No 55
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5.1e-23 Score=174.25 Aligned_cols=142 Identities=26% Similarity=0.342 Sum_probs=114.8
Q ss_pred CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcc
Q psy310 33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q 108 (240)
+|+.+.+++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+.. ..++.++|++|
T Consensus 4 ~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~--~~~~~i~~v~q 80 (220)
T cd03293 4 RNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL-ERPTSGEVLVDGEPVT--GPGPDRGYVFQ 80 (220)
T ss_pred EEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECc--cccCcEEEEec
Confidence 467777776 7899999999999999999999999999999999997 5678999999997753 23567999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+++.+++.+..... ........+.+..+++.+++.+.........|++++|++.+++++...
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 999888899999987653221 122233345567788888887766666777899999999999999875
No 56
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.90 E-value=4.9e-23 Score=172.38 Aligned_cols=144 Identities=28% Similarity=0.336 Sum_probs=115.6
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---c----hhhhhhceE
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---L----SQFRKLSCY 105 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~----~~~~~~~g~ 105 (240)
+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. . ...++.++|
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL-EKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC-CCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 4778888888999999999999999999999999999999999997 5678999999998742 1 123567999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++.+++.+++.|++.+..... ........+.+.++++.+++.+.........++++++++.+++++...
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~ 152 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKD 152 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999988899999988743221 122333345567788888887666666677889999999999999875
No 57
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.90 E-value=3.7e-23 Score=186.30 Aligned_cols=146 Identities=24% Similarity=0.270 Sum_probs=120.0
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQ 108 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q 108 (240)
.-+|+.+.|+++.+|+++||+|++||++||+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|
T Consensus 43 ~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl-~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q 121 (340)
T PRK13536 43 DLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM-TSPDAGKITVLGVPVPARARLARARIGVVPQ 121 (340)
T ss_pred EEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-CCCCceEEEECCEECCcchHHHhccEEEEeC
Confidence 347899999999999999999999999999999999999999999997 56789999999987532 234678999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+++.|++.+..... ........+.+..+++.+++.+.........|+++++++.+++++...
T Consensus 122 ~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 122 FDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred CccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999999998643322 122233344566778888888777777778899999999999999875
No 58
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=178.18 Aligned_cols=173 Identities=20% Similarity=0.237 Sum_probs=136.7
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~ 107 (240)
-.++.++||+-.++++|||+|.+||+++||||||||||||+++|+|++ .|++|+|.+.|.++.. ...+.-++.-|
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~P~~G~v~~~G~~it~l~p~~iar~Gi~RTF 85 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPSSGTVIFRGRDITGLPPHRIARLGIARTF 85 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-cCCCceEEECCcccCCCCHHHHHhccceeec
Confidence 367899999999999999999999999999999999999999999985 5789999999998642 12345678899
Q ss_pred ccccccccccHHHHHHHHHHHh--------cCCC-ccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310 108 QDNQLHANLTVEEAMNVATALK--------LGKD-LTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~--------~~~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
|.+.+++.+||.||+..+...+ .... .......+.+..+++.+++.+.........+.+.++++.++++++
T Consensus 86 Q~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa 165 (250)
T COG0411 86 QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALA 165 (250)
T ss_pred ccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHh
Confidence 9999999999999998864322 1111 134556677888999999999888887778888888899999998
Q ss_pred cccccceeeccceeEEeCCcEEEEEcCCCCC-----HHHHHHHHhCCcc
Q psy310 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAG-----KSTLLNILTGYKI 222 (240)
Q Consensus 179 ~~~~~~~il~~vsl~I~~Ge~valvG~NGsG-----KSTLlk~l~G~~~ 222 (240)
.. .++.|+.++-+| +-.+...|..+++
T Consensus 166 ~~-----------------P~lLLLDEPaAGln~~e~~~l~~~i~~i~~ 197 (250)
T COG0411 166 TQ-----------------PKLLLLDEPAAGLNPEETEELAELIRELRD 197 (250)
T ss_pred cC-----------------CCEEEecCccCCCCHHHHHHHHHHHHHHHh
Confidence 76 456677777666 3335555554443
No 59
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.90 E-value=5.8e-23 Score=186.28 Aligned_cols=140 Identities=23% Similarity=0.272 Sum_probs=117.5
Q ss_pred ecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhh----hhhceEEccc
Q psy310 37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQF----RKLSCYIMQD 109 (240)
Q Consensus 37 ~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~----~~~~g~v~Q~ 109 (240)
++++++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.++.. ..+ ++.++||||+
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl-~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL-IEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC-CCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 467888999999999999999999999999999999999997 56899999999987642 222 5689999999
Q ss_pred ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+++.+|+.|++.+..... ........+.+.++++.+++.+.....+...|++++|++.++++++..
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~ 147 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAE 147 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999999998764332 223444566778888888988777777788899999999999999875
No 60
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.90 E-value=5.8e-23 Score=182.21 Aligned_cols=139 Identities=20% Similarity=0.267 Sum_probs=113.5
Q ss_pred cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEccccccccc
Q psy310 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHAN 115 (240)
Q Consensus 38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~~~~~~ 115 (240)
.|+++++|+++||+|++||++||+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|++.+++.
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL-LRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 45678899999999999999999999999999999999997 56789999999987532 2345679999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 116 LTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 116 ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|+.|++.+..... ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus 81 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 142 (302)
T TIGR01188 81 LTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQ 142 (302)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999988653322 122333345677788888888777777778899999999999999875
No 61
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.90 E-value=5.4e-23 Score=182.47 Aligned_cols=144 Identities=23% Similarity=0.264 Sum_probs=116.5
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~ 110 (240)
+|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|++|++
T Consensus 8 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~ 86 (303)
T TIGR01288 8 VGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM-ISPDRGKITVLGEPVPSRARLARVAIGVVPQFD 86 (303)
T ss_pred EeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECcccHHHHhhcEEEEeccc
Confidence 5788899988999999999999999999999999999999999997 56789999999986531 23456799999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++.+|+.+++.+..... ..........+..+++.+++.+.........|++++|++.+++++...
T Consensus 87 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 87 NLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred cCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9988999999987533221 122233344566677888887766667777899999999999999875
No 62
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5e-23 Score=187.37 Aligned_cols=144 Identities=22% Similarity=0.247 Sum_probs=119.3
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~ 111 (240)
.|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|++|++.
T Consensus 7 ~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl-~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~ 85 (369)
T PRK11000 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-EDITSGDLFIGEKRMNDVPPAERGVGMVFQSYA 85 (369)
T ss_pred EEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCEECCCCCHhHCCEEEEeCCcc
Confidence 5788888888999999999999999999999999999999999997 56789999999987632 233567999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+|+.|++.+..... ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus 86 l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~ 151 (369)
T PRK11000 86 LYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (369)
T ss_pred cCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999998754321 123334455677788888888777777778899999999999999875
No 63
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.90 E-value=7.6e-23 Score=172.98 Aligned_cols=144 Identities=27% Similarity=0.293 Sum_probs=114.3
Q ss_pred CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcc
Q psy310 33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q 108 (240)
+|+.+.+++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|
T Consensus 4 ~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q 82 (220)
T cd03263 4 RNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE-LRPTSGTAYINGYSIRTDRKAARQSLGYCPQ 82 (220)
T ss_pred EeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEecccchHHHhhhEEEecC
Confidence 467778876 7899999999999999999999999999999999997 56789999999987532 234567999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++..++.+++.+..... ........+.+.++++.+++.+.........+.++++++.+++++...
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 83 FDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred cCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 999888999999987653322 112223344566777777877666666677889999999999999875
No 64
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.90 E-value=7.4e-23 Score=172.37 Aligned_cols=144 Identities=26% Similarity=0.336 Sum_probs=114.1
Q ss_pred CCceecC-CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceE
Q psy310 33 TNNNCEP-NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCY 105 (240)
Q Consensus 33 ~~~~~~~-~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~ 105 (240)
+|+.+.+ +++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|
T Consensus 5 ~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 83 (214)
T TIGR02673 5 HNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA-LTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGV 83 (214)
T ss_pred EeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEEcccCCHHHHHHHHhheEE
Confidence 4677777 467899999999999999999999999999999999997 56789999999986531 124567999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++.+++.+++.+++.+..... ........+.+.++++.+++.+.....+...|+++++++.+++++...
T Consensus 84 ~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (214)
T TIGR02673 84 VFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNS 155 (214)
T ss_pred EecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 999999888899999988753321 122233345567778888877665566667889999999999999875
No 65
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.90 E-value=7.3e-23 Score=181.53 Aligned_cols=144 Identities=22% Similarity=0.289 Sum_probs=118.7
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~ 110 (240)
+|+.+.++++.+|+++||+|.+||++||+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|++|++
T Consensus 6 ~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl-~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~ 84 (301)
T TIGR03522 6 SSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY-LPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHN 84 (301)
T ss_pred EEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEcccChHHHHhceEEecCCC
Confidence 5778888889999999999999999999999999999999999997 56889999999986532 23457799999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++.+++.|++.+..... ........+.++++++.+++.+.........+.++++++.+++++...
T Consensus 85 ~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 85 PLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred CCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999999999988654332 122233345567788888888777777777899999999999999875
No 66
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.90 E-value=8.5e-23 Score=172.46 Aligned_cols=144 Identities=22% Similarity=0.271 Sum_probs=116.1
Q ss_pred CCceecCCCc----eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEE
Q psy310 33 TNNNCEPNEK----TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYI 106 (240)
Q Consensus 33 ~~~~~~~~~~----~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v 106 (240)
+|+++.++++ ++|+++||+|++||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+... ...++.++|+
T Consensus 5 ~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 83 (218)
T cd03266 5 DALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL-LEPDAGFATVDGFDVVKEPAEARRRLGFV 83 (218)
T ss_pred EEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-cCCCCceEEECCEEcccCHHHHHhhEEEe
Confidence 5778888776 899999999999999999999999999999999997 56789999999976532 2345679999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++.+++.+++.|++.+..... ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus 84 ~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (218)
T cd03266 84 SDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHD 154 (218)
T ss_pred cCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcC
Confidence 99998888899999987643221 122333345667788888887766666677889999999999999875
No 67
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.90 E-value=9.1e-23 Score=171.69 Aligned_cols=144 Identities=22% Similarity=0.279 Sum_probs=115.3
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++.
T Consensus 4 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~ 82 (213)
T cd03301 4 ENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL-EEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYA 82 (213)
T ss_pred EeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECCcCCcccceEEEEecChh
Confidence 4678888888999999999999999999999999999999999997 56789999999986532 122356999999998
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++..++.+++.+..... ........+.+.++++.+++.+.....+...++++++++.+++++...
T Consensus 83 ~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 83 LYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred hccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 888899999987653221 122333345567778888887766666777889999999999999875
No 68
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.90 E-value=9.8e-23 Score=171.38 Aligned_cols=145 Identities=24% Similarity=0.319 Sum_probs=115.5
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhhceEEc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~~g~v~ 107 (240)
+|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|++
T Consensus 4 ~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~ 82 (213)
T cd03262 4 KNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL-EEPDSGTIIIDGLKLTDDKKNINELRQKVGMVF 82 (213)
T ss_pred EEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEECCccchhHHHHHhcceEEe
Confidence 4677888888999999999999999999999999999999999997 56789999999986521 23457799999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.+++.+++.|++.+...... ........+.+.++++.+++.+.........++++++++.+++++...
T Consensus 83 q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 153 (213)
T cd03262 83 QQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153 (213)
T ss_pred cccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence 99998888999999876432111 122223344566777778877666666677889999999999999875
No 69
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.3e-22 Score=173.03 Aligned_cols=144 Identities=28% Similarity=0.322 Sum_probs=115.5
Q ss_pred CCceecCCCc----eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhh
Q psy310 33 TNNNCEPNEK----TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKL 102 (240)
Q Consensus 33 ~~~~~~~~~~----~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~ 102 (240)
+|+.+.++++ ++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++.. ...++.
T Consensus 5 ~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (233)
T cd03258 5 KNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL-ERPTSGSVLVDGTDLTLLSGKELRKARRR 83 (233)
T ss_pred ecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 5677788776 899999999999999999999999999999999997 56789999999987532 123567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++|++.+++.+|+.|++.+..... ..........+.++++.+++.+.........++++++++.+++++...
T Consensus 84 i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (233)
T cd03258 84 IGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANN 158 (233)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999988899999987653221 122333345567788888887766666777889999999999999865
No 70
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.90 E-value=1.4e-22 Score=170.58 Aligned_cols=144 Identities=24% Similarity=0.307 Sum_probs=114.0
Q ss_pred CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceE
Q psy310 33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCY 105 (240)
Q Consensus 33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~ 105 (240)
+|+.+.+++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++.. ...++.++|
T Consensus 4 ~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 82 (214)
T cd03292 4 INVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE-ELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGV 82 (214)
T ss_pred EEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEEcccCCHHHHHHHHHheEE
Confidence 467777754 6899999999999999999999999999999999997 56789999999976531 124567999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++.+++.+++.+++.+..... ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus 83 v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (214)
T cd03292 83 VFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNS 154 (214)
T ss_pred EecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcC
Confidence 999999998899999987653321 112233344566777777877666666667889999999999999875
No 71
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.2e-22 Score=183.30 Aligned_cols=144 Identities=24% Similarity=0.254 Sum_probs=116.6
Q ss_pred CCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhh
Q psy310 33 TNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKL 102 (240)
Q Consensus 33 ~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~ 102 (240)
+|+.+.|+ .+++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.
T Consensus 5 ~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 83 (343)
T PRK11153 5 KNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL-ERPTSGRVLVDGQDLTALSEKELRKARRQ 83 (343)
T ss_pred EeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence 46777776 46899999999999999999999999999999999997 56789999999987532 123567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++|++.+++.+++.+++.+..... ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus 84 ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~ 158 (343)
T PRK11153 84 IGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASN 158 (343)
T ss_pred EEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999999988999999998754322 123333445667788888887776677777899999999999999875
No 72
>PRK10908 cell division protein FtsE; Provisional
Probab=99.90 E-value=1.5e-22 Score=171.67 Aligned_cols=144 Identities=24% Similarity=0.304 Sum_probs=113.9
Q ss_pred CCceecC-CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceE
Q psy310 33 TNNNCEP-NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCY 105 (240)
Q Consensus 33 ~~~~~~~-~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~ 105 (240)
+|+.+.+ +++.+|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++.. ...++.++|
T Consensus 5 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 83 (222)
T PRK10908 5 EHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI-ERPSAGKIWFSGHDITRLKNREVPFLRRQIGM 83 (222)
T ss_pred EeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEcccCChhHHHHHHhheEE
Confidence 4677777 667899999999999999999999999999999999997 56789999999976531 124567999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++.+++.+++.+++.+..... ........+.+..+++.+++.+.........|+++++++.+++++...
T Consensus 84 ~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 84 IFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred EecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 999998888899999987653221 122233344566677777877666666677889999999999999875
No 73
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=1.5e-22 Score=170.06 Aligned_cols=144 Identities=22% Similarity=0.289 Sum_probs=112.6
Q ss_pred CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
.|+.+.+++ +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|++
T Consensus 3 ~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (211)
T cd03225 3 KNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL-LGPTSGEVLVDGKDLTKLSLKELRRKVGLVF 81 (211)
T ss_pred eeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCEEcccCCHHHHHhhceEEe
Confidence 467788877 7899999999999999999999999999999999997 5678999999997653 223456799999
Q ss_pred cccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++. .+..+++.+++.+..... ..........+.++++.+++.+.........|++++|++.+++++...
T Consensus 82 q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 82 QNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred cChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9975 356789999987643221 122223344566777878877665666677899999999999999875
No 74
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.5e-22 Score=172.85 Aligned_cols=145 Identities=26% Similarity=0.299 Sum_probs=113.8
Q ss_pred CCCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---h---hh-h
Q psy310 32 NTNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---S---QF-R 100 (240)
Q Consensus 32 ~~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~---~~-~ 100 (240)
-+|+.+.++. +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... . .. +
T Consensus 8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 86 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL-DTPTSGDVIFNGQPMSKLSSAAKAELRN 86 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEEcCcCCHHHHHHHHh
Confidence 3567777754 5799999999999999999999999999999999997 56789999999987532 1 12 2
Q ss_pred hhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 101 ~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.++|++|++.+++.+++.+++.+..... .......++.+.++++.+++.+.........|+++++++.+++++...
T Consensus 87 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 87 QKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred ccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 56899999999888899999988753221 122233345567788888887666666667889999999999999875
No 75
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.89 E-value=1.4e-22 Score=172.65 Aligned_cols=144 Identities=24% Similarity=0.371 Sum_probs=114.3
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh-hhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~Q 108 (240)
+|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+... .. .+..++|++|
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 82 (232)
T cd03218 4 ENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL-VKPDSGKILLDGQDITKLPMHKRARLGIGYLPQ 82 (232)
T ss_pred EEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEecccCCHhHHHhccEEEecC
Confidence 4778888888999999999999999999999999999999999997 56789999999976532 11 2346899999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+++.+++.+..... ..........+.++++.+++.+.........|+++++++.+++++...
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 83 EASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred CccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 999888899999987643221 112223344566777777877766666677889999999999999875
No 76
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.89 E-value=1.6e-22 Score=172.73 Aligned_cols=147 Identities=24% Similarity=0.274 Sum_probs=114.7
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh-hhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~Q 108 (240)
+|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+... .. .+..++|++|
T Consensus 4 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 82 (236)
T cd03219 4 RGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF-LRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQ 82 (236)
T ss_pred eeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC-CCCCCceEEECCEECCCCCHHHHHhcCEEEEec
Confidence 5778888888899999999999999999999999999999999997 56789999999976532 11 2346899999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCc-------cHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDL-------TKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+|+.+++.+.......... ......+.+.++++.+++.+.........|+++++++.+++++...
T Consensus 83 ~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 161 (236)
T cd03219 83 IPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD 161 (236)
T ss_pred ccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999999998765432111100 1223344567777888887666666677889999999999999875
No 77
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=6.2e-23 Score=173.48 Aligned_cols=143 Identities=21% Similarity=0.310 Sum_probs=124.7
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
-++.+.||++.+++++||+|++|+++|++|+|||||||++|+|.|+ .+|++|+|.|+|.++.. ..+..+||+|.+..+
T Consensus 6 e~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl-le~~~G~I~~~g~~~~~-~~~~rIGyLPEERGL 83 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL-LEPTEGEITWNGGPLSQ-EIKNRIGYLPEERGL 83 (300)
T ss_pred ecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhcc-CCccCceEEEcCcchhh-hhhhhcccChhhhcc
Confidence 4788999999999999999999999999999999999999999997 56899999999988754 356789999999999
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+||.+.+.+-..++ ++++...++.++.+++++++..+....+...+.+.+|++....++.+.
T Consensus 84 y~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 84 YPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred CccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 99999999998765553 566777888999999999988877777777888888888887777664
No 78
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=1e-22 Score=170.57 Aligned_cols=140 Identities=26% Similarity=0.295 Sum_probs=110.4
Q ss_pred CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310 33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.+++ +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+......++.++|++|++.
T Consensus 3 ~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 81 (205)
T cd03226 3 ENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL-IKESSGSILLNGKPIKAKERRKSIGYVMQDVD 81 (205)
T ss_pred ccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence 467788877 8899999999999999999999999999999999997 56889999999987543344567999999974
Q ss_pred -ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 -LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 -~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+...++.|++.+..... . . ....+.++++.+++.+.....+...|++++|++.+++++...
T Consensus 82 ~~~~~~tv~e~l~~~~~~~-~----~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 82 YQLFTDSVREELLLGLKEL-D----A--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred hhhhhccHHHHHhhhhhhc-C----c--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 234679999987643211 1 1 123456677777877666666677889999999999999875
No 79
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.89 E-value=2.1e-22 Score=171.16 Aligned_cols=145 Identities=24% Similarity=0.317 Sum_probs=112.6
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC----CCCccEEEECCccCC-----chhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT----SGTEGSITINGHERN-----LSQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~----~~~~G~V~v~g~~~~-----~~~~~~~~ 103 (240)
+|+.+.++.+++|+++||+|.+||+++|+||||||||||+++|+|++. +|.+|+|.++|.+.. ....++.+
T Consensus 4 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 83 (227)
T cd03260 4 RDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRV 83 (227)
T ss_pred EEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhE
Confidence 578888888899999999999999999999999999999999999841 678999999998653 12345679
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhc--cCCCCCchhhHHHHHHHHhcc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCF--LSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++|++.++ .+|+.|++.+..... . ........+.+.++++.+++.+..... ....|++++|++.+++++...
T Consensus 84 ~~~~q~~~~~-~~tv~e~l~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 84 GMVFQKPNPF-PGSIYDNVAYGLRLH-G-IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred EEEecCchhc-cccHHHHHHhHHHhc-C-CCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999887 789999987653321 1 111122344566777777776654444 367889999999999999875
No 80
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.2e-22 Score=174.49 Aligned_cols=142 Identities=24% Similarity=0.353 Sum_probs=113.7
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
+|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ....++|++|++.+
T Consensus 5 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~ 81 (255)
T PRK11248 5 SHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF-VPYQHGSITLDGKPVEG--PGAERGVVFQNEGL 81 (255)
T ss_pred EEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCC--CCCcEEEEeCCCcc
Confidence 4677888888899999999999999999999999999999999997 56789999999987532 23458999999988
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+++.+..... ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus 82 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 82 LPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred CCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 88899999987643221 122233344567788888887665666677889999999999999875
No 81
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=9.7e-23 Score=171.14 Aligned_cols=143 Identities=22% Similarity=0.301 Sum_probs=111.3
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q 108 (240)
+|+++.||..++|++|||+|++||+++|+|+||+||||||++|+|+ .++.+|+|.++|.++.. ...+.-++||||
T Consensus 7 ~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl-~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPe 85 (237)
T COG0410 7 ENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL-VRPRSGRIIFDGEDITGLPPHERARLGIAYVPE 85 (237)
T ss_pred EeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeeEEECCeecCCCCHHHHHhCCeEeCcc
Confidence 5789999999999999999999999999999999999999999997 66779999999998743 234567899999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcC-CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRS-DTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
...+++.+||+||+......... +......++.+++.+ .+.+.....-...|++++|-+.++++++.+
T Consensus 86 gR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 86 GRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred cccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 99999999999999876443211 111111144444443 234444444556788888999999999876
No 82
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.1e-22 Score=172.58 Aligned_cols=147 Identities=24% Similarity=0.299 Sum_probs=114.7
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~ 111 (240)
.|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|++|++.
T Consensus 6 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 84 (239)
T cd03296 6 RNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL-ERPDSGTILFGGEDATDVPVQERNVGFVFQHYA 84 (239)
T ss_pred EeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECCcCCccccceEEEecCCc
Confidence 5778888888999999999999999999999999999999999997 56789999999976532 122456899999999
Q ss_pred ccccccHHHHHHHHHHHhcC-CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLG-KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+++.+++.+....... .........+.+..+++.+++.+.........|++++|++.+++++...
T Consensus 85 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 154 (239)
T cd03296 85 LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVE 154 (239)
T ss_pred ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 88889999998765322110 0012222344566778888887666666677889999999999999875
No 83
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.89 E-value=2.9e-22 Score=169.55 Aligned_cols=144 Identities=28% Similarity=0.342 Sum_probs=112.7
Q ss_pred CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---h---hhh-h
Q psy310 33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---S---QFR-K 101 (240)
Q Consensus 33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~---~~~-~ 101 (240)
+|+.+.+++ +++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+... . ..+ +
T Consensus 5 ~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (221)
T TIGR02211 5 ENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL-DNPTSGEVLFNGQSLSKLSSNERAKLRNK 83 (221)
T ss_pred EeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEEhhhcCHhHHHHHHHh
Confidence 467777754 5799999999999999999999999999999999997 56789999999976531 1 122 5
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.++|++|++.+++.+++.|++.+..... ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus 84 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (221)
T TIGR02211 84 KLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ 159 (221)
T ss_pred cEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 6899999998888899999987653221 112222344566778888887666666677889999999999999875
No 84
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.89 E-value=3.2e-22 Score=172.43 Aligned_cols=146 Identities=23% Similarity=0.289 Sum_probs=115.3
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----------hhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----------SQFR 100 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----------~~~~ 100 (240)
-+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ...+
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK11264 6 VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL-EQPEAGTIRVGDITIDTARSLSQQKGLIRQLR 84 (250)
T ss_pred EeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCeEEEECCEEccccccccchhhHHHHhh
Confidence 35788888888999999999999999999999999999999999997 56789999999976531 1235
Q ss_pred hhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 101 ~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.++|++|++.+++..++.|++.+...... ........+.+.++++.+++...........|+++++++.+++++...
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 85 QHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred hhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 678999999988888999999876432111 122233345566777777877655666677889999999999999875
No 85
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3e-22 Score=171.98 Aligned_cols=144 Identities=22% Similarity=0.307 Sum_probs=114.3
Q ss_pred CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcc
Q psy310 33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q 108 (240)
+|+.+.+++ +++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...+..++|++|
T Consensus 4 ~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (242)
T cd03295 4 ENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL-IEPTSGEIFIDGEDIREQDPVELRRKIGYVIQ 82 (242)
T ss_pred EEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCeEcCcCChHHhhcceEEEcc
Confidence 467888887 7899999999999999999999999999999999997 56789999999976531 234567899999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch--hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH--AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+|+.|++.+..... ........+.+.++++.+++.+ .........|++++|++.+++++...
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 153 (242)
T cd03295 83 QIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAAD 153 (242)
T ss_pred CccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence 999988899999987653321 1222333445667778777764 45555667889999999999999875
No 86
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.4e-22 Score=172.05 Aligned_cols=147 Identities=29% Similarity=0.299 Sum_probs=113.3
Q ss_pred CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceE
Q psy310 33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCY 105 (240)
Q Consensus 33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~ 105 (240)
.|+.+.+++ +++|+++||+|.+||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|
T Consensus 4 ~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 82 (241)
T cd03256 4 ENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL-VEPTSGSVLIDGTDINKLKGKALRQLRRQIGM 82 (241)
T ss_pred eeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-cCCCCceEEECCEeccccCHhHHHHHHhccEE
Confidence 467888877 7899999999999999999999999999999999997 56789999999976531 234567999
Q ss_pred EcccccccccccHHHHHHHHHHHh---cC--CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALK---LG--KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~---~~--~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++.+++.+++.+++.+..... .. .........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus 83 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 162 (241)
T cd03256 83 IFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQ 162 (241)
T ss_pred EcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999888899999987542110 00 0011122234566677777877666666677889999999999999875
No 87
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.89 E-value=1.8e-22 Score=170.07 Aligned_cols=145 Identities=27% Similarity=0.313 Sum_probs=111.8
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
+|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ..++.++|++|++.+
T Consensus 3 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~ 79 (213)
T cd03235 3 EDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL-LKPTSGSIRVFGKPLE--KERKRIGYVPQRRSI 79 (213)
T ss_pred ccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC-CCCCCCEEEECCccHH--HHHhheEEecccccc
Confidence 5778888888899999999999999999999999999999999997 5678999999997653 346679999999876
Q ss_pred c--ccccHHHHHHHHHHHhcCC-CccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 H--ANLTVEEAMNVATALKLGK-DLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~--~~ltv~e~l~~~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
. ..+|+.|++.+........ ........+.++.+++.+++.+.........|+++++++.+++++...
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 150 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQD 150 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 3 2379999987642211000 001122344567778888887666666777889999999999999865
No 88
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.89 E-value=2.8e-22 Score=168.28 Aligned_cols=140 Identities=20% Similarity=0.306 Sum_probs=112.8
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++.
T Consensus 4 ~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 82 (208)
T cd03268 4 NDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL-IKPDSGEITFDGKSYQKNIEALRRIGALIEAPG 82 (208)
T ss_pred EEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-cCCCceEEEECCCcccchHHHHhhEEEecCCCc
Confidence 4678888888999999999999999999999999999999999997 56789999999986532 234567999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+|+.|++.+..... ... .+.+..+++.+++.+.........|+++++++.+++++...
T Consensus 83 ~~~~~tv~e~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 83 FYPNLTARENLRLLARLL---GIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred cCccCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 888999999987653221 111 23455667777777666666667889999999999999875
No 89
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.2e-22 Score=172.28 Aligned_cols=169 Identities=22% Similarity=0.267 Sum_probs=136.7
Q ss_pred CCceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC----chhhhhhceEEc
Q psy310 33 TNNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN----LSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~----~~~~~~~~g~v~ 107 (240)
.|+.+.+.+. ++|+++||+|++||+++|+|+||||||||+++|+|+ ..|.+|.|.++|.+.. ...+++.+||||
T Consensus 7 ~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL-l~p~~G~v~~~g~~~~~~~~~~~~~~~vG~Vf 85 (235)
T COG1122 7 ENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL-LKPTSGEVLVDGLDTSSEKSLLELRQKVGLVF 85 (235)
T ss_pred EEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc-CcCCCCEEEECCeeccchhhHHHhhcceEEEE
Confidence 4566777665 999999999999999999999999999999999998 5678999999998754 567889999999
Q ss_pred ccccc-cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhccccccee
Q psy310 108 QDNQL-HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTI 186 (240)
Q Consensus 108 Q~~~~-~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 186 (240)
|+|.. +-..||.+.++|...- ..++.++.++++..++..+++.+...+.+...|++++|++.+|..+...
T Consensus 86 Qnpd~q~~~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~------ 156 (235)
T COG1122 86 QNPDDQLFGPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG------ 156 (235)
T ss_pred ECcccccccCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcC------
Confidence 99853 3456888888876432 2345556778888899999999888888888999999999999988775
Q ss_pred eccceeEEeCCcEEEEEcCCCC-----CHHHHHHHHhCCcc
Q psy310 187 LKSVSGRLRSGELTAIMGPSGA-----GKSTLLNILTGYKI 222 (240)
Q Consensus 187 l~~vsl~I~~Ge~valvG~NGs-----GKSTLlk~l~G~~~ 222 (240)
..+-|+.++.| |+..+++.|.-+..
T Consensus 157 -----------P~iliLDEPta~LD~~~~~~l~~~l~~L~~ 186 (235)
T COG1122 157 -----------PEILLLDEPTAGLDPKGRRELLELLKKLKE 186 (235)
T ss_pred -----------CCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 45777888877 45556777766533
No 90
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.89 E-value=4.4e-22 Score=173.77 Aligned_cols=146 Identities=23% Similarity=0.282 Sum_probs=115.6
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceE
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCY 105 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~ 105 (240)
-+|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.++.. ...++.++|
T Consensus 10 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 88 (269)
T PRK11831 10 MRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ-IAPDHGEILFDGENIPAMSRSRLYTVRKRMSM 88 (269)
T ss_pred EeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEEccccChhhHHHHhhcEEE
Confidence 46788888888999999999999999999999999999999999997 56789999999976531 123457899
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++.+++.+|+.+++.+..... . ..........+..+++.+++.+.........|+++++++.+++++...
T Consensus 89 v~q~~~~~~~~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~ 161 (269)
T PRK11831 89 LFQSGALFTDMNVFDNVAYPLREH-T-QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALE 161 (269)
T ss_pred EecccccCCCCCHHHHHHHHHHHc-c-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999888899999987643211 1 122233344566677888887766666777899999999999999875
No 91
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=4.2e-22 Score=170.75 Aligned_cols=145 Identities=23% Similarity=0.285 Sum_probs=115.3
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhhceEEc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~~g~v~ 107 (240)
.|+.+.++++++|+++||+|.+||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++
T Consensus 5 ~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~ 83 (240)
T PRK09493 5 KNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL-EEITSGDLIVDGLKVNDPKVDERLIRQEAGMVF 83 (240)
T ss_pred EeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECCcCChhHHHHhhceEEEe
Confidence 4677888888899999999999999999999999999999999997 56789999999987532 23356799999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.+++.+++.+++.+...... ........+.+.++++.+++.+.........++++++++.+++++...
T Consensus 84 q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 84 QQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred cccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 99998888999999876432111 122333345567778888887666666677889999999999999865
No 92
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.89 E-value=4e-22 Score=170.56 Aligned_cols=144 Identities=26% Similarity=0.371 Sum_probs=113.3
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~ 110 (240)
+|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ....+.++|++|++
T Consensus 5 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~ 83 (236)
T TIGR03864 5 AGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL-YVAQEGQISVAGHDLRRAPRAALARLGVVFQQP 83 (236)
T ss_pred EeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-cCCCceEEEECCEEcccCChhhhhhEEEeCCCC
Confidence 4677788888899999999999999999999999999999999997 56789999999976531 12235789999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.++..+++.+++.+..... ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus 84 ~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 84 TLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred CCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 8888899999987643221 122223344566677777877666666677889999999999999875
No 93
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3.9e-22 Score=167.72 Aligned_cols=143 Identities=26% Similarity=0.343 Sum_probs=114.3
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~ 110 (240)
+|+++.++++++|+++||+|++| +++|+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|++
T Consensus 4 ~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 81 (211)
T cd03264 4 ENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL-TPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEF 81 (211)
T ss_pred EEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC-CCCCccEEEECCCccccchHHHHhheEEecCCC
Confidence 46778888889999999999999 9999999999999999999997 56789999999976532 23467799999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++.+++.+++.+..... ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus 82 ~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 148 (211)
T cd03264 82 GVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGD 148 (211)
T ss_pred cccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence 9888899999987654322 122223344566777878877666666677889999999999999875
No 94
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.89 E-value=2.4e-22 Score=184.41 Aligned_cols=146 Identities=23% Similarity=0.336 Sum_probs=119.2
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQD 109 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~ 109 (240)
+|+.+.|+++++|+++||+|++||+++|+||||||||||||+|+|+ .+|.+|+|.++|.+.. ...+++.++||+|+
T Consensus 7 ~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl-l~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~ 85 (402)
T PRK09536 7 SDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT-LTPTAGTVLVAGDDVEALSARAASRRVASVPQD 85 (402)
T ss_pred eeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-CCCCCcEEEECCEEcCcCCHHHHhcceEEEccC
Confidence 5788999999999999999999999999999999999999999997 5678999999998753 23456789999999
Q ss_pred ccccccccHHHHHHHHHHHhcC--CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 110 NQLHANLTVEEAMNVATALKLG--KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~--~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.++..+++.|++.+....+.. .... ....+.++++++.+++.+.........|++++|++.+++++.+.
T Consensus 86 ~~l~~~~tv~e~v~~~~~~~~~~~~~~~-~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 86 TSLSFEFDVRQVVEMGRTPHRSRFDTWT-ETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred CCCCCCCCHHHHHHhccchhcccccCCC-HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9998899999998764321111 0112 22345677788888888777777778899999999999999875
No 95
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.89 E-value=2.2e-22 Score=172.65 Aligned_cols=147 Identities=25% Similarity=0.243 Sum_probs=113.1
Q ss_pred CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceE
Q psy310 33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCY 105 (240)
Q Consensus 33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~ 105 (240)
.|+.+.++ ++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|
T Consensus 5 ~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 83 (243)
T TIGR02315 5 ENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL-VEPSSGSILLEGTDITKLRGKKLRKLRRRIGM 83 (243)
T ss_pred EeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-cCCCccEEEECCEEhhhCCHHHHHHHHhheEE
Confidence 46777887 77899999999999999999999999999999999997 56789999999976531 124567999
Q ss_pred EcccccccccccHHHHHHHHHHHh---cC--CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALK---LG--KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~---~~--~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++.+++.+++.+++.+..... .. .........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 163 (243)
T TIGR02315 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQ 163 (243)
T ss_pred EcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999888899999986532100 00 0011122234566677778877666666677889999999999999875
No 96
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.5e-22 Score=173.75 Aligned_cols=146 Identities=23% Similarity=0.262 Sum_probs=117.0
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh----hhhhc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ----FRKLS 103 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~----~~~~~ 103 (240)
...|+.+.++.+.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... .. .++.+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl-~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL-IEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 445888999999999999999999999999999999999999999997 56789999999976531 11 13568
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++|++.+++.+++.+++.+..... ........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999888899999988653221 112233344566778888887766667777899999999999999875
No 97
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.88 E-value=5.4e-22 Score=164.39 Aligned_cols=137 Identities=23% Similarity=0.248 Sum_probs=105.8
Q ss_pred CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhhceEEccccc-cc
Q psy310 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCYIMQDNQ-LH 113 (240)
Q Consensus 40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~~g~v~Q~~~-~~ 113 (240)
+++.+|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|++. ..
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL-LRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 456799999999999999999999999999999999997 56789999999977531 133567899999973 23
Q ss_pred ccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 114 ANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 114 ~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
...++.|++.+..... ........+.+.++++.+++.+.........++++++++.++++++..
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 145 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMR 145 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 3579999987653221 122233344566777777877666666677889999999999999875
No 98
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=5.7e-22 Score=174.71 Aligned_cols=144 Identities=22% Similarity=0.222 Sum_probs=112.2
Q ss_pred CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhh
Q psy310 33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKL 102 (240)
Q Consensus 33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~ 102 (240)
+|+.+.|+. +++|++|||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+... ...++.
T Consensus 6 ~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (287)
T PRK13637 6 ENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL-LKPTSGKIIIDGVDITDKKVKLSDIRKK 84 (287)
T ss_pred EEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCccEEEECCEECCCcCccHHHHhhc
Confidence 456677653 4799999999999999999999999999999999997 56789999999987632 245678
Q ss_pred ceEEccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc--hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 103 SCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN--HAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 103 ~g~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
++|++|++. .+...++.+++.+..... ........+.+.++++.+++. +.........|++++|++.++++++.
T Consensus 85 ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 85 VGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred eEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 999999974 233579999998653321 233444455677788888875 44555667788999999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 162 ~ 162 (287)
T PRK13637 162 E 162 (287)
T ss_pred C
Confidence 5
No 99
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.8e-22 Score=170.02 Aligned_cols=145 Identities=23% Similarity=0.354 Sum_probs=114.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q 108 (240)
+|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...+..++|++|
T Consensus 7 ~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 85 (241)
T PRK10895 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI-VPRDAGNIIIDDEDISLLPLHARARRGIGYLPQ 85 (241)
T ss_pred eCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHHHHhCeEEecc
Confidence 5778888888999999999999999999999999999999999997 56789999999976532 113467999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+++.|++.+..... ...........+.++++.+++.+.........++++++++.+++++...
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (241)
T PRK10895 86 EASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAAN 155 (241)
T ss_pred CCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcC
Confidence 998888899999987642211 1122233345566777777777666666667889999999999999875
No 100
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.88 E-value=4.5e-22 Score=168.35 Aligned_cols=142 Identities=25% Similarity=0.338 Sum_probs=107.9
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh-hhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~Q 108 (240)
+|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... .. .++.++|++|
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 82 (222)
T cd03224 4 ENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL-LPPRSGSIRFDGRDITGLPPHERARAGIGYVPE 82 (222)
T ss_pred eeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEEcCCCCHHHHHhcCeEEecc
Confidence 4778888888999999999999999999999999999999999997 56789999999976532 11 2456999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcC-CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRS-DTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+|+.+++.+..... . . ......+..+++.+ .+.+.........++++++++.+++++...
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~-~---~-~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 83 GRRIFPELTVEENLLLGAYAR-R---R-AKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred ccccCCCCcHHHHHHHHhhhc-C---c-hhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 999998899999987653221 1 1 11223334444444 344444455566788999999999999875
No 101
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.88 E-value=6e-22 Score=168.45 Aligned_cols=148 Identities=30% Similarity=0.429 Sum_probs=110.9
Q ss_pred CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC--CCccEEEECCccCCchhhhhhceEE
Q psy310 33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS--GTEGSITINGHERNLSQFRKLSCYI 106 (240)
Q Consensus 33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--~~~G~V~v~g~~~~~~~~~~~~g~v 106 (240)
.|+..++.. +++|+++||+|++||+++|+||||||||||+++|+|++.+ +.+|+|.++|.+......++.++|+
T Consensus 7 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~ 86 (226)
T cd03234 7 WDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYV 86 (226)
T ss_pred ecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEe
Confidence 345555543 6899999999999999999999999999999999997432 7899999999876544456779999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHH-hhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRT-LFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++.+++.+|+.|++.+..................+.. +++.+++.+.........+.++++++.+++++...
T Consensus 87 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 87 RQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred CCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence 999999999999999987543221111111222223333 66666666655556677888999999999999875
No 102
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.88 E-value=8.3e-22 Score=167.61 Aligned_cols=144 Identities=24% Similarity=0.324 Sum_probs=112.5
Q ss_pred CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch---h---h-hh
Q psy310 33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS---Q---F-RK 101 (240)
Q Consensus 33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~---~---~-~~ 101 (240)
.|+.+.++. .++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.... . . ++
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 88 (228)
T PRK10584 10 HHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL-DDGSSGEVSLVGQPLHQMDEEARAKLRAK 88 (228)
T ss_pred eeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-CCCCCeeEEECCEEcccCCHHHHHHHHhh
Confidence 466777764 3699999999999999999999999999999999997 567899999999765321 1 1 24
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.++|++|++.+++.+++.+++.+..... ........+.+.+++..+++.+.....+...|+++++++.+++++...
T Consensus 89 ~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~ 164 (228)
T PRK10584 89 HVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR 164 (228)
T ss_pred eEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 6899999998888899999987643221 112233345567778888887766666677889999999999999875
No 103
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=8.9e-22 Score=168.94 Aligned_cols=145 Identities=25% Similarity=0.310 Sum_probs=113.8
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---------chhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---------LSQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---------~~~~~~~~ 103 (240)
.|+.+.++++.+|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ....++.+
T Consensus 6 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i 84 (242)
T PRK11124 6 NGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL-EMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNV 84 (242)
T ss_pred EeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEecccccccchhhHHHHHhhe
Confidence 4677888888999999999999999999999999999999999997 5678999999998642 12335678
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++|++.+++.+++.|++........ ..........+..+++.+++.+.........++++++++.+++++...
T Consensus 85 ~~~~q~~~~~~~~tv~e~i~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (242)
T PRK11124 85 GMVFQQYNLWPHLTVQQNLIEAPCRVL--GLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred EEEecCccccCCCcHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999888999999864321111 112223344566777777877666666677889999999999999875
No 104
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.88 E-value=1.1e-21 Score=169.46 Aligned_cols=145 Identities=25% Similarity=0.291 Sum_probs=115.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----------------
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---------------- 96 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---------------- 96 (240)
+|+.+.++.+++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++..
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~ 82 (252)
T TIGR03005 4 SDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL-EPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHL 82 (252)
T ss_pred EEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEccccccccccccccchhHH
Confidence 5778888888999999999999999999999999999999999997 56789999999976521
Q ss_pred hhhhhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHH
Q psy310 97 SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALA 176 (240)
Q Consensus 97 ~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (240)
...++.++|++|++.+++..++.+++.+...... ........+.+.++++.+++.+.........++++++++.++++
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 83 RQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 1345679999999999888999999876432111 12233334456677788887766666667788899999999999
Q ss_pred Hhcc
Q psy310 177 MYNR 180 (240)
Q Consensus 177 ~~~~ 180 (240)
+...
T Consensus 161 l~~~ 164 (252)
T TIGR03005 161 LAMR 164 (252)
T ss_pred HHcC
Confidence 9875
No 105
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.88 E-value=1.4e-21 Score=169.40 Aligned_cols=146 Identities=25% Similarity=0.305 Sum_probs=115.7
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---------------
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--------------- 96 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--------------- 96 (240)
-+|+.+.++++++|+++||+|++||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+...
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 86 (257)
T PRK10619 8 VIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-EKPSEGSIVVNGQTINLVRDKDGQLKVADKNQ 86 (257)
T ss_pred EeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECCEEcccccccccccccccchH
Confidence 46788888888999999999999999999999999999999999997 56789999999976521
Q ss_pred -hhhhhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-hhccCCCCCchhhHHHHH
Q psy310 97 -SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-RCFLSGPWGTFESSVLLA 174 (240)
Q Consensus 97 -~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 174 (240)
...++.++|++|++.+++.+++.|++.+...... ........+.+.++++.+++.+.. .......++++++++.++
T Consensus 87 ~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~la 164 (257)
T PRK10619 87 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 164 (257)
T ss_pred HHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 2335679999999999888999999876432111 122333455667788888886653 555677889999999999
Q ss_pred HHHhcc
Q psy310 175 LAMYNR 180 (240)
Q Consensus 175 ~~~~~~ 180 (240)
+++...
T Consensus 165 ral~~~ 170 (257)
T PRK10619 165 RALAME 170 (257)
T ss_pred HHHhcC
Confidence 999875
No 106
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.88 E-value=1.2e-21 Score=168.81 Aligned_cols=144 Identities=22% Similarity=0.258 Sum_probs=112.7
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC-----ccEEEECCccCCc-----hhhhhh
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-----EGSITINGHERNL-----SQFRKL 102 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~-----~G~V~v~g~~~~~-----~~~~~~ 102 (240)
+|+++.++++.+|+++||+|++||+++|+|+|||||||||++|+|+ .+|. +|+|.++|.+... ...++.
T Consensus 5 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (247)
T TIGR00972 5 ENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM-NDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRR 83 (247)
T ss_pred EEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-CCCCcCCCCceEEEECCEEccccccchHHHHhh
Confidence 4678888888899999999999999999999999999999999998 4455 9999999987531 234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++ .++.+++.+..... .........+.+..+++.+++. +.........|++++|++.+++++.
T Consensus 84 i~~v~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 84 VGMVFQKPNPFP-MSIYDNIAYGPRLH--GIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred eEEEecCcccCC-CCHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 999999998887 99999988653321 1112233345566777777775 4455556678899999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 161 ~~ 162 (247)
T TIGR00972 161 VE 162 (247)
T ss_pred cC
Confidence 75
No 107
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.1e-21 Score=171.86 Aligned_cols=144 Identities=22% Similarity=0.162 Sum_probs=113.4
Q ss_pred CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcc
Q psy310 33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q 108 (240)
.|+.+.++ ..++|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|
T Consensus 8 ~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 86 (274)
T PRK13647 8 EDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI-YLPQRGRVKVMGREVNAENEKWVRSKVGLVFQ 86 (274)
T ss_pred EEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCceEEEECCEECCCCCHHHHHhhEEEEec
Confidence 56777775 56799999999999999999999999999999999997 56789999999987532 234567999999
Q ss_pred ccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++. .+...++.+++.+..... ........+.+..+++.+++.+.....+...|+++++++.+++++...
T Consensus 87 ~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~ 156 (274)
T PRK13647 87 DPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMD 156 (274)
T ss_pred ChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 973 345679999997653221 223333345567788888887766777778899999999999999875
No 108
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.5e-21 Score=169.28 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=112.5
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~ 102 (240)
-+|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|++.+ |++|+|.++|.+.. ....++.
T Consensus 7 i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~ 86 (258)
T PRK14241 7 VKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRT 86 (258)
T ss_pred EeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcc
Confidence 36788888888999999999999999999999999999999999998543 36999999997652 1234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++.+++.+++.+..... .........+.+.++++.+++. +.........++++++++.+++++.
T Consensus 87 i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (258)
T PRK14241 87 IGMVFQRPNPFPTMSIRDNVVAGLKLN--GVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA 164 (258)
T ss_pred eEEEccccccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 999999999888899999987653221 1112223344556666666652 3344455668889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 165 ~~ 166 (258)
T PRK14241 165 VE 166 (258)
T ss_pred cC
Confidence 75
No 109
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.88 E-value=1.4e-21 Score=165.93 Aligned_cols=146 Identities=26% Similarity=0.265 Sum_probs=108.1
Q ss_pred CCceecCCCc----eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhh
Q psy310 33 TNNNCEPNEK----TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKL 102 (240)
Q Consensus 33 ~~~~~~~~~~----~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~ 102 (240)
+|+.+.++++ ++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+... ...++.
T Consensus 5 ~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (228)
T cd03257 5 KNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL-LKPTSGSIIFDGKDLLKLSRRLRKIRRKE 83 (228)
T ss_pred EeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEEccccchhhHHHhhcc
Confidence 4677777665 799999999999999999999999999999999997 56789999999986532 234567
Q ss_pred ceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 103 SCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 103 ~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
++|++|++ .+.+.+++.+++.+...... ...........+.+++..+++. ..........|++++|++.+++++..
T Consensus 84 i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (228)
T cd03257 84 IQMVFQDPMSSLNPRMTIGEQIAEPLRIHG-KLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALAL 162 (228)
T ss_pred EEEEecCchhhcCCcCCHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhc
Confidence 99999998 45667899999876432211 1111111122234566667764 34455556688899999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 163 ~ 163 (228)
T cd03257 163 N 163 (228)
T ss_pred C
Confidence 5
No 110
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.2e-21 Score=171.97 Aligned_cols=144 Identities=23% Similarity=0.261 Sum_probs=114.8
Q ss_pred CCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 33 TNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 33 ~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
.|+.+.++. +.+|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+.. ....++.++|+
T Consensus 8 ~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v 86 (279)
T PRK13650 8 KNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL-LEAESGQIIIDGDLLTEENVWDIRHKIGMV 86 (279)
T ss_pred EeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEECCcCcHHHHHhhceEE
Confidence 466777753 4699999999999999999999999999999999997 5678999999998753 22355789999
Q ss_pred ccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++. ++...++.+++.+..... ........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus 87 ~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 87 FQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred EcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 99984 566789999998653221 233344455677788888888777777777889999999999999875
No 111
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.1e-21 Score=164.37 Aligned_cols=141 Identities=23% Similarity=0.329 Sum_probs=113.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~ 110 (240)
+|+++.++.+++|+++||+|.+||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++
T Consensus 5 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (204)
T PRK13538 5 RNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL-ARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQP 83 (204)
T ss_pred EEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEEcccchHHhhhheEEeCCcc
Confidence 4678888888999999999999999999999999999999999997 56789999999976531 23456789999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++.+++.|++.+..... .. ...+.++++++.+++.+.........++++++++.+++++...
T Consensus 84 ~~~~~~tv~e~l~~~~~~~--~~----~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 84 GIKTELTALENLRFYQRLH--GP----GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred ccCcCCcHHHHHHHHHHhc--Cc----cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 8888899999987653221 11 1134456677778877666666677889999999999999875
No 112
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.88 E-value=7.8e-22 Score=171.21 Aligned_cols=142 Identities=30% Similarity=0.385 Sum_probs=112.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQD 109 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~ 109 (240)
.|+.+.++++.+|+++||+|.+||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|++|+
T Consensus 6 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 84 (258)
T PRK13548 6 RNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE-LSPDSGEVRLNGRPLADWSPAELARRRAVLPQH 84 (258)
T ss_pred EeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCEEEECCEEcccCCHHHhhhheEEEccC
Confidence 4678888888999999999999999999999999999999999997 5678999999997642 12334678999999
Q ss_pred ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310 110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
+.++..+++.+++.+..... ..........+..+++.+++.+.........|++++|++.+++++.
T Consensus 85 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 85 SSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLA 150 (258)
T ss_pred CcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 98878889999987643211 1111222345667777778777666677778899999999999888
No 113
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.88 E-value=7.3e-22 Score=165.22 Aligned_cols=138 Identities=23% Similarity=0.341 Sum_probs=110.8
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~ 110 (240)
+|+++.++++.+|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+... ..+++.++|++|++
T Consensus 4 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (201)
T cd03231 4 DELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL-SPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAP 82 (201)
T ss_pred EEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEecccccHHhhhheEEecccc
Confidence 5678888888999999999999999999999999999999999997 56789999999977532 23456799999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++.+++.+++.+... .. ..+.++++++.+++.+.........++++++++.+++++...
T Consensus 83 ~~~~~~tv~e~l~~~~~-----~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 143 (201)
T cd03231 83 GIKTTLSVLENLRFWHA-----DH----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSG 143 (201)
T ss_pred ccCCCcCHHHHHHhhcc-----cc----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 88888999999875321 10 123455666777776655555667888999999999999875
No 114
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.88 E-value=8.1e-22 Score=166.72 Aligned_cols=142 Identities=23% Similarity=0.264 Sum_probs=114.2
Q ss_pred CCceecCCCce----eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch----hhhhhce
Q psy310 33 TNNNCEPNEKT----ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS----QFRKLSC 104 (240)
Q Consensus 33 ~~~~~~~~~~~----~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~----~~~~~~g 104 (240)
.|+++.|+.+. ++++|||+|.+||++||+|+||||||||+|+|+|+ ..|.+|+|.++|...... .+++.+.
T Consensus 7 ~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl-~~p~~G~I~~~G~~~~~~~~~~~~~~~VQ 85 (252)
T COG1124 7 RNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL-EKPSSGSILLDGKPLAPKKRAKAFYRPVQ 85 (252)
T ss_pred eceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc-cCCCCceEEECCcccCccccchhhcccee
Confidence 57788888877 99999999999999999999999999999999997 778999999999765432 3567889
Q ss_pred EEccccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHHHHhcc
Q psy310 105 YIMQDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 105 ~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|||||. +.|..++++.+..+... ..+++. ++.+.++++.+++... ..+++...++++.||+.+++|+..+
T Consensus 86 mVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 86 MVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred EEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence 9999985 56778888877755332 223333 3337888888887654 5667777899999999999999765
No 115
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.7e-21 Score=167.99 Aligned_cols=147 Identities=20% Similarity=0.237 Sum_probs=111.9
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC---chhhhhhceE
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|++.+ |++|+|.++|.++. ....++.++|
T Consensus 7 ~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 86 (250)
T PRK14247 7 RDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQM 86 (250)
T ss_pred EeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEE
Confidence 5778888888999999999999999999999999999999999998543 46999999998653 2234567999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++.++..+|+.|++.+...... .........+.+.++++.+++.+ .........|+++++++.+++++...
T Consensus 87 v~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 164 (250)
T PRK14247 87 VFQIPNPIPNLSIFENVALGLKLNR-LVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQ 164 (250)
T ss_pred EeccCccCCCCcHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999988888999999986532211 00122233445566777766532 33445566788999999999999875
No 116
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=1.7e-21 Score=167.15 Aligned_cols=147 Identities=21% Similarity=0.219 Sum_probs=114.2
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---h-hhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---S-QFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~-~~~~~~g~v~Q 108 (240)
+|+.+.++++++|+++||+|++||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+... . ..++.++|++|
T Consensus 6 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 84 (242)
T TIGR03411 6 EGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK-TRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQ 84 (242)
T ss_pred EeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCCeEEECCeecCCCCHHHHHhcCeeEecc
Confidence 4778888888899999999999999999999999999999999997 56789999999976532 1 12346999999
Q ss_pred cccccccccHHHHHHHHHHHhcC--C---CccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLG--K---DLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~--~---~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+++.+++.+....... . ..........+..+++.+++.+.........|+++++++.+++++...
T Consensus 85 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~ 161 (242)
T TIGR03411 85 KPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD 161 (242)
T ss_pred ccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999999998764321100 0 011122344567778888877666666677889999999999999875
No 117
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.5e-21 Score=170.59 Aligned_cols=145 Identities=26% Similarity=0.285 Sum_probs=114.8
Q ss_pred CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEE
Q psy310 32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v 106 (240)
-+|+.+.++ ++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ..+++.++|+
T Consensus 10 ~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v 88 (271)
T PRK13632 10 VENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL-LKPQSGEIKIDGITISKENLKEIRKKIGII 88 (271)
T ss_pred EEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCEecCcCCHHHHhcceEEE
Confidence 457777774 56899999999999999999999999999999999997 56789999999987532 2356679999
Q ss_pred ccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++. .+..+|+.+++.+..... ..........+.++++.+++.+.........|+++++++.+++++...
T Consensus 89 ~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (271)
T PRK13632 89 FQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALN 160 (271)
T ss_pred EeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 99974 566789999987643221 122333345667788888887776777778889999999999999875
No 118
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.4e-21 Score=163.41 Aligned_cols=139 Identities=19% Similarity=0.255 Sum_probs=110.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC--chhhhhhceEEcccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--LSQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~--~~~~~~~~g~v~Q~~ 110 (240)
+|+++.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ...+++.++|++|++
T Consensus 5 ~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~ 83 (200)
T PRK13540 5 IELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL-LNPEKGEILFERQSIKKDLCTYQKQLCFVGHRS 83 (200)
T ss_pred EEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCeeEEECCCccccCHHHHHhheEEecccc
Confidence 5788888888999999999999999999999999999999999997 5678999999998653 123456799999998
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++..++.+++.+.... .. . ...+.++++.+++.+.........++++++++.+++++...
T Consensus 84 ~~~~~~tv~~~~~~~~~~--~~--~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~ 145 (200)
T PRK13540 84 GINPYLTLRENCLYDIHF--SP--G----AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSK 145 (200)
T ss_pred ccCcCCCHHHHHHHHHhc--Cc--c----hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 888889999998764311 11 1 12455666666665544455556788999999999999875
No 119
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.8e-21 Score=168.12 Aligned_cols=147 Identities=20% Similarity=0.247 Sum_probs=109.9
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~~ 103 (240)
.|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|++.+ +++|+|.++|.++. ....++.+
T Consensus 8 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 87 (253)
T PRK14267 8 VNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREV 87 (253)
T ss_pred EeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhce
Confidence 5778888888999999999999999999999999999999999998543 25999999998653 12345679
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++|++.+++.+++.+++.+..... ..........+.+..+++.+++. +.........|+++++++.+++++..
T Consensus 88 ~~~~q~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 166 (253)
T PRK14267 88 GMVFQYPNPFPHLTIYDNVAIGVKLN-GLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM 166 (253)
T ss_pred eEEecCCccCCCCcHHHHHHHHHHhc-CccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc
Confidence 99999999888899999987653221 10011222233455566665542 23344455678899999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 167 ~ 167 (253)
T PRK14267 167 K 167 (253)
T ss_pred C
Confidence 5
No 120
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.9e-21 Score=164.29 Aligned_cols=142 Identities=19% Similarity=0.239 Sum_probs=112.8
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~ 111 (240)
-+|+++.++++++|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++.....++.++|++|++.
T Consensus 14 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~ 92 (214)
T PRK13543 14 AHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL-LHVESGQIQIDGKTATRGDRSRFMAYLGHLPG 92 (214)
T ss_pred EeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC-CCCCCeeEEECCEEccchhhhhceEEeecCcc
Confidence 36788889888999999999999999999999999999999999997 56789999999987643334557899999998
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+++.+++.+..... . .. ..+.++.++..+++.+.........++++++++.+++++...
T Consensus 93 ~~~~~t~~e~l~~~~~~~--~-~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 93 LKADLSTLENLHFLCGLH--G-RR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred cccCCcHHHHHHHHHHhc--C-Cc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcC
Confidence 888889999987643221 1 11 123455666777776655556667888999999999999875
No 121
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.4e-21 Score=172.52 Aligned_cols=143 Identities=24% Similarity=0.207 Sum_probs=111.0
Q ss_pred CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-------chhhh
Q psy310 33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-------LSQFR 100 (240)
Q Consensus 33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-------~~~~~ 100 (240)
+|+.+.|+. .++|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++. ....+
T Consensus 6 ~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (290)
T PRK13634 6 QKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL-LQPTSGTVTIGERVITAGKKNKKLKPLR 84 (290)
T ss_pred EEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCcEEEECCEECccccccchHHHHH
Confidence 466777753 5699999999999999999999999999999999997 5678999999998753 12345
Q ss_pred hhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHH
Q psy310 101 KLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 101 ~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
+.++|++|++ .++ ..++.+++.+..... ........+.+.++++.+++. +.........|+++++++.+++++
T Consensus 85 ~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 85 KKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred hhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 6799999987 344 569999988653221 223333445677788888886 445566677889999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
+..
T Consensus 161 ~~~ 163 (290)
T PRK13634 161 AME 163 (290)
T ss_pred HcC
Confidence 875
No 122
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.87 E-value=8.7e-22 Score=171.02 Aligned_cols=138 Identities=21% Similarity=0.271 Sum_probs=112.6
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~ 110 (240)
.-+|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+. ...++.++|++|++
T Consensus 14 ~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl-~~p~~G~i~~~g~~~--~~~~~~i~~v~q~~ 90 (257)
T PRK11247 14 LLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL-ETPSAGELLAGTAPL--AEAREDTRLMFQDA 90 (257)
T ss_pred EEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCeEEEECCEEH--HHhhCceEEEecCc
Confidence 346888889888999999999999999999999999999999999997 567899999988654 23456799999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++.+++.|++.+... . .....+.++++.+++.+.........|+++++++.+++++...
T Consensus 91 ~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 91 RLLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred cCCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 88888999999875310 0 1123456677777877666666677889999999999999875
No 123
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.3e-21 Score=168.16 Aligned_cols=145 Identities=21% Similarity=0.262 Sum_probs=110.0
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~ 102 (240)
-+|+.+.++++++|+++||+|.+||+++|+|+|||||||||++|+|++.+ +++|+|.++|.+... ...++.
T Consensus 15 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 94 (258)
T PRK14268 15 VENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKN 94 (258)
T ss_pred EeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhh
Confidence 46788888888999999999999999999999999999999999998543 479999999976531 234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++ +++.+++.+..... ........+.+.++++.+++. +.........+++++|++.+++++.
T Consensus 95 i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 170 (258)
T PRK14268 95 VGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA 170 (258)
T ss_pred EEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999998877 89999998653221 122222334455566666552 2334445567889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 171 ~~ 172 (258)
T PRK14268 171 VK 172 (258)
T ss_pred cC
Confidence 75
No 124
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=6e-22 Score=159.73 Aligned_cols=139 Identities=27% Similarity=0.351 Sum_probs=115.7
Q ss_pred cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhhhhceEEcccc
Q psy310 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFRKLSCYIMQDN 110 (240)
Q Consensus 38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~~~~g~v~Q~~ 110 (240)
..+...+|++|+|.|++||.++|||||||||||||-+++|+ ..|++|+|.+.|++... .-..+.+|+|||-.
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-d~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-DDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-CCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 34567899999999999999999999999999999999997 67899999999987531 11236899999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+.+.++..||+.+...+.-. ........++++++++++.+....++...+++++|++.+++++..+
T Consensus 98 ~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 98 HLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred eccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 999999999999987665421 2233456688899999988877777777899999999999998765
No 125
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.87 E-value=2e-21 Score=164.57 Aligned_cols=144 Identities=27% Similarity=0.385 Sum_probs=112.9
Q ss_pred CceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhc
Q psy310 34 NNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLS 103 (240)
Q Consensus 34 ~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~ 103 (240)
|+.+.++. +.+|+++||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+... ...++.+
T Consensus 6 ~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 84 (220)
T TIGR02982 6 NLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL-RSVQEGSLKVLGQELYGASEKELVQLRRNI 84 (220)
T ss_pred EEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECCEEhHhcCHhHHHHHHhhe
Confidence 45555543 6799999999999999999999999999999999997 56789999999986531 1245679
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++|++.++..+++.+++.+..... ...........+.++++.+++.+.........+.++++++.++++++..
T Consensus 85 ~~~~q~~~~~~~~t~~~n~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~ 159 (220)
T TIGR02982 85 GYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHR 159 (220)
T ss_pred EEEcCChhhcCCCCHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999988899999988653321 1122333445567788888887666666667888999999999999875
No 126
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=9.4e-22 Score=163.46 Aligned_cols=145 Identities=19% Similarity=0.274 Sum_probs=113.4
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~ 102 (240)
-.|+...||++.+|++||++|++++++|||||||||||||||+|+.+... ..+|+|.++|+++. .-.+|+.
T Consensus 10 ~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~ 89 (253)
T COG1117 10 VRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRR 89 (253)
T ss_pred ecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHH
Confidence 35788999999999999999999999999999999999999999996322 13699999998764 3467899
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh----hhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA----QRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
+|+|||.|.-++ +++.||+.+...++. .......++++..+....+.+. ......+.|++++|++.+|+++.
T Consensus 90 vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA 165 (253)
T COG1117 90 VGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA 165 (253)
T ss_pred heeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence 999999999888 999999998866542 2224555666666655544332 22233457889999999999987
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 166 v~ 167 (253)
T COG1117 166 VK 167 (253)
T ss_pred cC
Confidence 64
No 127
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.6e-21 Score=173.40 Aligned_cols=144 Identities=19% Similarity=0.153 Sum_probs=110.9
Q ss_pred CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------------
Q psy310 33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------------ 95 (240)
Q Consensus 33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------------ 95 (240)
.|+.+.|++ .++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..
T Consensus 6 ~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (305)
T PRK13651 6 KNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL-LLPDTGTIEWIFKDEKNKKKTKEKEKVL 84 (305)
T ss_pred EEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCcEEEEeceecccccccccccccc
Confidence 356666654 2699999999999999999999999999999999997 5678999999875431
Q ss_pred ---------------chhhhhhceEEccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhh
Q psy310 96 ---------------LSQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRC 158 (240)
Q Consensus 96 ---------------~~~~~~~~g~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~ 158 (240)
....++.++||||++. .+...++.+++.+..... ........+.+.++++.+++. +....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 85 EKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred cccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 1234677999999862 334579999998654321 233444456677788888886 55666
Q ss_pred ccCCCCCchhhHHHHHHHHhcc
Q psy310 159 FLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+...|+++++++.++.++...
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~ 183 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAME 183 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhC
Confidence 7777889999999999999875
No 128
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.8e-21 Score=170.35 Aligned_cols=144 Identities=21% Similarity=0.211 Sum_probs=113.8
Q ss_pred CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEc
Q psy310 33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~ 107 (240)
+|+.+.++ .+++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|++
T Consensus 5 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 83 (274)
T PRK13644 5 ENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL-LRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVF 83 (274)
T ss_pred EEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCEECCccccHHHHHhheEEEE
Confidence 46777774 56799999999999999999999999999999999997 56789999999987531 23456799999
Q ss_pred cccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++. .+...++.+++.+..... ........+.+.++++.+++.+.........|++++|++.++++++..
T Consensus 84 q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (274)
T PRK13644 84 QNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTME 154 (274)
T ss_pred EChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 9985 355679999987643221 123334445677778888887777777777889999999999999875
No 129
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.9e-21 Score=178.29 Aligned_cols=144 Identities=22% Similarity=0.252 Sum_probs=116.5
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh----hhhhceE
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ----FRKLSCY 105 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~----~~~~~g~ 105 (240)
.++.+.++...+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.++.. .. .++.++|
T Consensus 32 ~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl-~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igy 110 (400)
T PRK10070 32 EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL-IEPTRGQVLIDGVDIAKISDAELREVRRKKIAM 110 (400)
T ss_pred HHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC-CCCCCCEEEECCEECCcCCHHHHHHHHhCCEEE
Confidence 3466777777899999999999999999999999999999999997 56789999999987532 11 1346999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++.+++.+|+.|++.+..... ........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus 111 v~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~ 182 (400)
T PRK10070 111 VFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAIN 182 (400)
T ss_pred EECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998754322 122333445667788888888777777788899999999999999875
No 130
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.87 E-value=3e-21 Score=173.39 Aligned_cols=137 Identities=22% Similarity=0.254 Sum_probs=109.2
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceEEcccc--ccc
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCYIMQDN--QLH 113 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~v~Q~~--~~~ 113 (240)
..+|+++||+|++||+++|+|+||||||||+++|+|+ .++.+|+|.++|.++.. ..+++.++||+|++ .+.
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl-~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL-VKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 5799999999999999999999999999999999997 56789999999987632 12456799999998 577
Q ss_pred ccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 114 ANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 114 ~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+++.+++.+...... ..+.+....+.+.++++.+++. +....+....|+++.|++.++++++..
T Consensus 113 p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~ 179 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILE 179 (331)
T ss_pred CCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 88999999886533221 1234444556677888888874 445667777899999999999999875
No 131
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.6e-21 Score=170.16 Aligned_cols=144 Identities=22% Similarity=0.257 Sum_probs=114.5
Q ss_pred CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-----chhhhhhceEE
Q psy310 33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-----LSQFRKLSCYI 106 (240)
Q Consensus 33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-----~~~~~~~~g~v 106 (240)
.|+.+.++ ++.+|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+.. ....+..++|+
T Consensus 9 ~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl-~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v 87 (283)
T PRK13636 9 EELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI-LKPSSGRILFDGKPIDYSRKGLMKLRESVGMV 87 (283)
T ss_pred EeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCccEEEECCEECCCCcchHHHHHhhEEEE
Confidence 57778885 57899999999999999999999999999999999997 5678999999998763 12355789999
Q ss_pred ccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++. .+...++.+++.+..... ........+.+..+++.+++.+..+......|++++|++.+++++...
T Consensus 88 ~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~ 159 (283)
T PRK13636 88 FQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME 159 (283)
T ss_pred ecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 99974 234579999987643221 223333345677788888888777777778899999999999999875
No 132
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.5e-21 Score=169.94 Aligned_cols=149 Identities=20% Similarity=0.257 Sum_probs=114.9
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
.-.|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+.. ....++.++|++
T Consensus 13 ~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 91 (265)
T PRK10575 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH-QPPSEGEILLDAQPLESWSSKAFARKVAYLP 91 (265)
T ss_pred EEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC-CCCCCCEEEECCEehhhCCHHHHhhheEEec
Confidence 456788888888999999999999999999999999999999999997 5678999999997642 223456799999
Q ss_pred ccccccccccHHHHHHHHHHHhcCC-CccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGK-DLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.+++.+++.+++.+........ ........+.+..++..+++.+.........|+++++++.+++++...
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 92 QQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred cCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9988888889999987532111000 001112234566777778877666666677889999999999999875
No 133
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.87 E-value=2.5e-21 Score=161.46 Aligned_cols=168 Identities=21% Similarity=0.259 Sum_probs=122.8
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~ 110 (240)
.|+++.++++.+|+++||+|.+||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++
T Consensus 4 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (198)
T TIGR01189 4 RNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL-LRPDSGEVRWNGTALAEQRDEPHRNILYLGHLP 82 (198)
T ss_pred EEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCccEEEECCEEcccchHHhhhheEEeccCc
Confidence 4677888888999999999999999999999999999999999997 56789999999976421 22346789999998
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeeccc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSV 190 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~v 190 (240)
.+++.+++.+++.+..... . .. ...+.++++.+++.+.........|+++++++.+++++.... +-.+++..
T Consensus 83 ~~~~~~tv~~~l~~~~~~~--~--~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p-~llllDEP 154 (198)
T TIGR01189 83 GLKPELSALENLHFWAAIH--G--GA---QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRA-PLWILDEP 154 (198)
T ss_pred ccccCCcHHHHHHHHHHHc--C--Cc---HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCC-CEEEEeCC
Confidence 8888899999987643221 1 11 223556677777766555556677889999999999998752 22333333
Q ss_pred eeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 191 SGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 191 sl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
.-.+... .+..+.++|.-+
T Consensus 155 t~~LD~~-----------~~~~l~~~l~~~ 173 (198)
T TIGR01189 155 TTALDKA-----------GVALLAGLLRAH 173 (198)
T ss_pred CcCCCHH-----------HHHHHHHHHHHH
Confidence 3222211 456677777654
No 134
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3e-21 Score=170.09 Aligned_cols=144 Identities=20% Similarity=0.174 Sum_probs=111.4
Q ss_pred CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhh
Q psy310 33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFR 100 (240)
Q Consensus 33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~ 100 (240)
+|+.+.++. +++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++.. ...+
T Consensus 6 ~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (287)
T PRK13641 6 ENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL-LKPSSGTITIAGYHITPETGNKNLKKLR 84 (287)
T ss_pred EEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEECccccccchHHHHH
Confidence 467777763 4699999999999999999999999999999999997 56899999999986531 2345
Q ss_pred hhceEEccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHh
Q psy310 101 KLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 101 ~~~g~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
..++|++|++. .+..+++.+++.+..... ........+.+.++++.+++. ..........|++++|++.+++++.
T Consensus 85 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 85 KKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred hceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 67899999973 233579999987653321 123333445567788888886 4566667778999999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 162 ~~ 163 (287)
T PRK13641 162 YE 163 (287)
T ss_pred cC
Confidence 75
No 135
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.9e-21 Score=166.94 Aligned_cols=146 Identities=18% Similarity=0.258 Sum_probs=109.3
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~ 102 (240)
-+|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|++.+ +.+|+|.++|.++. ....++.
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 89 (254)
T PRK14273 10 TENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRK 89 (254)
T ss_pred EeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhc
Confidence 35788888888899999999999999999999999999999999998543 25899999997642 1234667
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.++. +++.+++.+..... . ........+.+..+++.+++ .+.........++++++++.++++++
T Consensus 90 i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~ 166 (254)
T PRK14273 90 IGMVFQTPNPFL-MSIYDNISYGPKIH-G-TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA 166 (254)
T ss_pred eEEEeecccccc-CcHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 999999988774 89999987653221 1 11222233445556666554 23334455668889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 167 ~~ 168 (254)
T PRK14273 167 IE 168 (254)
T ss_pred cC
Confidence 75
No 136
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.4e-21 Score=170.64 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=110.8
Q ss_pred CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhh
Q psy310 33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFR 100 (240)
Q Consensus 33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~ 100 (240)
+|+.++|+. +++|+++||+|.+||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++.. ...+
T Consensus 6 ~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (286)
T PRK13646 6 DNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL-LKPTTGTVTVDDITITHKTKDKYIRPVR 84 (286)
T ss_pred EEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEECccccccchHHHHH
Confidence 466777753 4699999999999999999999999999999999997 56789999999987531 2456
Q ss_pred hhceEEccccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHH
Q psy310 101 KLSCYIMQDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 101 ~~~g~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
+.++|+||++. +++ .++.+++.+..... ........+.+.+++..+++. +.........++++++++.+++++
T Consensus 85 ~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 85 KRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred hheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 78999999873 443 59999988653221 223334445667788888885 455566677889999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
+..
T Consensus 161 ~~~ 163 (286)
T PRK13646 161 AMN 163 (286)
T ss_pred HhC
Confidence 875
No 137
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=2.8e-21 Score=162.37 Aligned_cols=140 Identities=20% Similarity=0.291 Sum_probs=110.3
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
+|+++.++.+.+|+++||+|++||+++|+|+||||||||+++|+|+ .++++|+|.++|.+......++.++|++|++.+
T Consensus 6 ~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 84 (207)
T PRK13539 6 EDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL-LPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAM 84 (207)
T ss_pred EeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEeCcchhhHhhcEEecCCCcC
Confidence 4678888888899999999999999999999999999999999997 567899999999765322256778999998888
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++..++.+++.+..... . .. .+.+.++++.+++.+.........++++++++.+++++...
T Consensus 85 ~~~~tv~~~l~~~~~~~-~--~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 85 KPALTVAENLEFWAAFL-G--GE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred CCCCcHHHHHHHHHHhc-C--Cc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcC
Confidence 88899999987643221 1 11 12355677777776555555566788999999999999875
No 138
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.6e-21 Score=167.84 Aligned_cols=148 Identities=22% Similarity=0.264 Sum_probs=111.6
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhh
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRK 101 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~ 101 (240)
.-.|+++.++++++|+++||+|++||+++|+|+|||||||||++|+|++.+ |++|+|.++|.++. ....++
T Consensus 21 ~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~ 100 (267)
T PRK14235 21 RARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRA 100 (267)
T ss_pred EEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhh
Confidence 346888899888999999999999999999999999999999999998553 47999999997753 123456
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHH
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
.++|++|++.+++. ++.+++.+..... ..........+.+..+++.+++.. .........+++++|++.+++++
T Consensus 101 ~i~~v~q~~~~~~~-tv~enl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 178 (267)
T PRK14235 101 RVGMVFQKPNPFPK-SIYENVAYGPRIH-GLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAI 178 (267)
T ss_pred ceEEEecCCCCCCC-cHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 78999999888764 9999997653221 100112223345566777777643 23344566788999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
+..
T Consensus 179 ~~~ 181 (267)
T PRK14235 179 AVS 181 (267)
T ss_pred HcC
Confidence 875
No 139
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2e-21 Score=163.34 Aligned_cols=165 Identities=25% Similarity=0.374 Sum_probs=122.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.++++. .++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|++.
T Consensus 4 ~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 80 (211)
T cd03298 4 DKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF-ETPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80 (211)
T ss_pred EeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEEcCcCCHhHccEEEEecccc
Confidence 46677777654 399999999999999999999999999999997 56789999999976531 223467999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeeccce
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVS 191 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs 191 (240)
+++.+++.|++.+...... ... ....+.+.++++.+++.+.........|+++++++.+++++...
T Consensus 81 ~~~~~tv~enl~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~----------- 146 (211)
T cd03298 81 LFAHLTVEQNVGLGLSPGL--KLT-AEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRD----------- 146 (211)
T ss_pred cCCCCcHHHHHhccccccc--Ccc-HHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcC-----------
Confidence 9888999999876422111 111 12244566778888887766666777889999999999999865
Q ss_pred eEEeCCcEEEEEcCCCCC-----HHHHHHHHhCC
Q psy310 192 GRLRSGELTAIMGPSGAG-----KSTLLNILTGY 220 (240)
Q Consensus 192 l~I~~Ge~valvG~NGsG-----KSTLlk~l~G~ 220 (240)
..+.|+.++-+| +-.|.++|..+
T Consensus 147 ------p~llllDEP~~~LD~~~~~~l~~~l~~~ 174 (211)
T cd03298 147 ------KPVLLLDEPFAALDPALRAEMLDLVLDL 174 (211)
T ss_pred ------CCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 235555555553 55566666654
No 140
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.87 E-value=3.7e-21 Score=164.87 Aligned_cols=148 Identities=20% Similarity=0.191 Sum_probs=110.7
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEEEECCccCCc---hh-hhhhceEEc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSITINGHERNL---SQ-FRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~ 107 (240)
+|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|+. .+|++|+|.++|.+... .. .+..++|++
T Consensus 4 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 83 (243)
T TIGR01978 4 KDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAF 83 (243)
T ss_pred eeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeee
Confidence 57888888889999999999999999999999999999999999974 25789999999986532 11 123478999
Q ss_pred ccccccccccHHHHHHHHHHHhcC--C--CccHHHHHHHHHHhhhcCCcch-hhhhccC-CCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLG--K--DLTKAARKDVVRTLFYRSDTNH-AQRCFLS-GPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~--~--~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.+++.+++.+++.+....... . ........+.+..+++.+++.. ....... ..|+++++++.+++++...
T Consensus 84 q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~ 162 (243)
T TIGR01978 84 QYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLE 162 (243)
T ss_pred ccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcC
Confidence 999999999999988764321110 0 0122222345667777777763 3344444 4888999999999999875
No 141
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.2e-21 Score=167.85 Aligned_cols=146 Identities=23% Similarity=0.298 Sum_probs=113.6
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQD 109 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~ 109 (240)
+|+.+.++++++|+++||+|++||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|++|+
T Consensus 6 ~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 84 (255)
T PRK11231 6 ENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL-LTPQSGTVFLGDKPISMLSSRQLARRLALLPQH 84 (255)
T ss_pred EeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC-cCCCCcEEEECCEEhHHCCHHHHhhheEEeccc
Confidence 4778888888999999999999999999999999999999999997 5678999999997642 22345679999999
Q ss_pred ccccccccHHHHHHHHHHH--hcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 110 NQLHANLTVEEAMNVATAL--KLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~--~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+++.+++.+++.+.... ....... ......+.++++.+++.+.........|+++++++.+++++...
T Consensus 85 ~~~~~~~tv~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 156 (255)
T PRK11231 85 HLTPEGITVRELVAYGRSPWLSLWGRLS-AEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQD 156 (255)
T ss_pred CCCCCCccHHHHHHhccchhhhhccCCC-HHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9888888999998753210 0000111 22234566777777877666666777889999999999999875
No 142
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=9.8e-22 Score=161.49 Aligned_cols=141 Identities=26% Similarity=0.395 Sum_probs=121.1
Q ss_pred CCceecCCCce--eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310 33 TNNNCEPNEKT--ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~~~~~--~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~ 110 (240)
.++...|.+++ +|+++|++|.+||.+.++|||||||||||++++|+ ..|..|+|.++|+.+.-+ ....|.|||++
T Consensus 7 ~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf-~~P~~G~i~l~~r~i~gP--gaergvVFQ~~ 83 (259)
T COG4525 7 SHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF-VTPSRGSIQLNGRRIEGP--GAERGVVFQNE 83 (259)
T ss_pred hheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC-cCcccceEEECCEeccCC--CccceeEeccC
Confidence 35677777776 99999999999999999999999999999999998 567899999999866432 23459999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
.+++-+++.+|+.+...+. ++.+..+.+.+.+++..+++.+....++-..|++++|++-+++++.-
T Consensus 84 ~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~ 149 (259)
T COG4525 84 ALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAV 149 (259)
T ss_pred ccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhc
Confidence 9999999999999986554 56788888999999999999888888877889999999988887653
No 143
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=2.1e-21 Score=165.39 Aligned_cols=141 Identities=25% Similarity=0.309 Sum_probs=107.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---h-hhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---S-QFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~-~~~~~~g~v~Q 108 (240)
+|+.+.++.+++|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+... . ..++.++|++|
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 82 (230)
T TIGR03410 4 SNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL-LPVKSGSIRLDGEDITKLPPHERARAGIAYVPQ 82 (230)
T ss_pred EeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCEEEECCEECCCCCHHHHHHhCeEEecc
Confidence 5788888888999999999999999999999999999999999997 56789999999976532 1 12457899999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCC-cchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD-TNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+++.+++.+..... . ... .+...+++..++ +.+.........|+++++++.+++++...
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~-~--~~~---~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 83 GREIFPRLTVEENLLTGLAAL-P--RRS---RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred CCcccCCCcHHHHHHHHHHhc-C--cch---HHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 999988899999987653221 1 111 122334444443 33444455566788999999999999875
No 144
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.7e-21 Score=168.88 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=110.9
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhhceEEc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~~g~v~ 107 (240)
+|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++.. ...++.++|++
T Consensus 5 ~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~ 83 (271)
T PRK13638 5 SDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL-LRPQKGAVLWQGKPLDYSKRGLLALRQQVATVF 83 (271)
T ss_pred EEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC-CCCCccEEEECCEEcccccCCHHHHHhheEEEe
Confidence 4788888888899999999999999999999999999999999997 56789999999987531 23456799999
Q ss_pred ccccc-cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQL-HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~-~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.. ....++.+++.+..... ........+.+..+++.+++.+.........|+++++++.+++++...
T Consensus 84 q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~ 154 (271)
T PRK13638 84 QDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154 (271)
T ss_pred eChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcC
Confidence 99753 34457888776542211 122233344566677777777666666677889999999999999875
No 145
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.6e-21 Score=168.03 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=116.9
Q ss_pred CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310 33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q 108 (240)
.|+.+.++ .+.+|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+.. ....++.++|++|
T Consensus 7 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 85 (277)
T PRK13652 7 RDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI-LKPTSGSVLIRGEPITKENIREVRKFVGLVFQ 85 (277)
T ss_pred EEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEECCcCCHHHHHhheEEEec
Confidence 46778875 46799999999999999999999999999999999997 5688999999998653 2345567899999
Q ss_pred ccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceee
Q psy310 109 DNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTIL 187 (240)
Q Consensus 109 ~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 187 (240)
++. .+...++.+++.+..... ........+.+..+++.+++.+.........|+++++++.+++++.... +-.++
T Consensus 86 ~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p-~llil 161 (277)
T PRK13652 86 NPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEP-QVLVL 161 (277)
T ss_pred CcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC-CEEEE
Confidence 974 334679999987643221 2233334456677888888877666677778899999999999998752 23344
Q ss_pred ccce
Q psy310 188 KSVS 191 (240)
Q Consensus 188 ~~vs 191 (240)
+...
T Consensus 162 DEPt 165 (277)
T PRK13652 162 DEPT 165 (277)
T ss_pred eCCc
Confidence 4443
No 146
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.7e-21 Score=164.31 Aligned_cols=154 Identities=26% Similarity=0.309 Sum_probs=118.9
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++.
T Consensus 4 ~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 82 (232)
T cd03300 4 ENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF-ETPTSGEILLDGKDITNLPPHKRPVNTVFQNYA 82 (232)
T ss_pred EeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEEcCcCChhhcceEEEecccc
Confidence 4678888888999999999999999999999999999999999997 55789999999986532 123567899999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeeccce
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVS 191 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs 191 (240)
++..+++.+++.+..... ........+.+..+++.+++.+.....+...+.++++++.++++++... +-.+|+...
T Consensus 83 ~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p-~llllDEP~ 158 (232)
T cd03300 83 LFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEP-KVLLLDEPL 158 (232)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC-CEEEEcCCc
Confidence 888889999987653322 1122233445667778788876666666778899999999999998752 333444444
No 147
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.4e-21 Score=169.17 Aligned_cols=144 Identities=20% Similarity=0.198 Sum_probs=114.6
Q ss_pred CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEc
Q psy310 33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~ 107 (240)
.|+.+.++. +++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.++.. ...++.++|++
T Consensus 9 ~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~-~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 87 (279)
T PRK13635 9 EHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL-LLPEAGTITVGGMVLSEETVWDVRRQVGMVF 87 (279)
T ss_pred EEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCcEEEECCEECCcCcHHHHhhheEEEE
Confidence 567777764 5799999999999999999999999999999999997 56789999999987532 23456799999
Q ss_pred cccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++. ++...++.+++.+..... ........+.+..+++.+++.+.....+...|+++++++.+++++...
T Consensus 88 q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 88 QNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred eCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 9984 566789999987653221 123334455677788888887777777778899999999999999875
No 148
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.8e-21 Score=164.95 Aligned_cols=146 Identities=21% Similarity=0.248 Sum_probs=110.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--CCCccEEEECCccCCc---hhhhhhceEEc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--SGTEGSITINGHERNL---SQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~~~~G~V~v~g~~~~~---~~~~~~~g~v~ 107 (240)
+|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|++. +|.+|+|.++|+++.. ...++.++|++
T Consensus 6 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 85 (246)
T PRK14269 6 TNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVF 85 (246)
T ss_pred eeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEe
Confidence 578888888899999999999999999999999999999999999753 3689999999987532 23466799999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.+++ .++.+++.+..... ............+..+++.+++. +.........++++++++.+++++...
T Consensus 86 q~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 86 QQPNVFV-KSIYENISYAPKLH-GMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred cCCcccc-ccHHHHhhhHHhhc-CcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9998876 69999987653221 10001122233455677776663 223344556788999999999999875
No 149
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.1e-21 Score=168.62 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=112.9
Q ss_pred CCceecCCC------ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhh
Q psy310 33 TNNNCEPNE------KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKL 102 (240)
Q Consensus 33 ~~~~~~~~~------~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~ 102 (240)
+|+++.|++ +++|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++.. ...++.
T Consensus 8 ~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~i~g~~i~~~~~~~~~~~~ 86 (280)
T PRK13633 8 KNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL-LIPSEGKVYVDGLDTSDEENLWDIRNK 86 (280)
T ss_pred eeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEeccccccHHHHhhh
Confidence 567777753 5799999999999999999999999999999999997 56789999999987632 234678
Q ss_pred ceEEcccccc-cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 103 SCYIMQDNQL-HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 103 ~g~v~Q~~~~-~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++|++.. +...++.+++.+..... ........+.++.+++.+++.+.....+...|+++++++.+++++...
T Consensus 87 i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 162 (280)
T PRK13633 87 AGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR 162 (280)
T ss_pred eEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 9999999742 23457888887653221 123334455677788888887777777788899999999999999875
No 150
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.7e-21 Score=169.65 Aligned_cols=143 Identities=21% Similarity=0.174 Sum_probs=110.2
Q ss_pred CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-------chhhh
Q psy310 33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-------LSQFR 100 (240)
Q Consensus 33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-------~~~~~ 100 (240)
+|+.+.++. +.+|+++||+|.+||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+.. ....+
T Consensus 5 ~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 83 (288)
T PRK13643 5 EKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL-LQPTEGKVTVGDIVVSSTSKQKEIKPVR 83 (288)
T ss_pred EEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC-CCCCCcEEEECCEECccccccccHHHHH
Confidence 356666653 3599999999999999999999999999999999997 5678999999998753 12356
Q ss_pred hhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHH
Q psy310 101 KLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 101 ~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
+.++||+|++ .++. .++.+++.+..... ..........+.++++.+++. +.........++++++++.+++++
T Consensus 84 ~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 84 KKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred hhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 7899999987 4444 69999988754321 223344455677788888875 355566677889999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
+..
T Consensus 160 ~~~ 162 (288)
T PRK13643 160 AME 162 (288)
T ss_pred HhC
Confidence 875
No 151
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.87 E-value=2.8e-21 Score=176.18 Aligned_cols=145 Identities=22% Similarity=0.234 Sum_probs=118.0
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc----cCC---ch---hhh-
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH----ERN---LS---QFR- 100 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~----~~~---~~---~~~- 100 (240)
..++.++++...+|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|. +.. .. ..+
T Consensus 27 ~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl-~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 27 REEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL-NPVSRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence 34567889999999999999999999999999999999999999997 5678999999985 221 11 122
Q ss_pred hhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 101 ~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.++|+||++.+++.+|+.|++.+..... ..........+.++++.+++.+.....+...|++++|++.+++++...
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~ 182 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMD 182 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999998764321 233444556778888888988777777777899999999999999875
No 152
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.86 E-value=5.1e-21 Score=163.95 Aligned_cols=140 Identities=25% Similarity=0.274 Sum_probs=108.4
Q ss_pred ecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC--chhhhhhceEEc-cccccc
Q psy310 37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--LSQFRKLSCYIM-QDNQLH 113 (240)
Q Consensus 37 ~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~--~~~~~~~~g~v~-Q~~~~~ 113 (240)
+.++.+++|+++||+|++||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|++ |++.++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL-LQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-cCCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 566788999999999999999999999999999999999997 5678999999997542 123456789997 556777
Q ss_pred ccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 114 ANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 114 ~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+++.+++.+..... ........+.+..+++.+++.+.........++++++++.+++++...
T Consensus 108 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~ 171 (236)
T cd03267 108 WDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHE 171 (236)
T ss_pred CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 8899999987643321 122223344556677777776665556667888999999999999875
No 153
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.86 E-value=3.6e-21 Score=163.71 Aligned_cols=142 Identities=23% Similarity=0.263 Sum_probs=110.2
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ 108 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q 108 (240)
-+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ....++.++|++|
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 88 (225)
T PRK10247 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL-ISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQ 88 (225)
T ss_pred EeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cCCCCCeEEECCEEcCcCCHHHHHhccEEEec
Confidence 45788888888999999999999999999999999999999999997 5688999999997642 1234567899999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++ .++.+++.+...... . .. ..+.+..+++.+++. ..........+.++++++.++++++..
T Consensus 89 ~~~l~~-~tv~enl~~~~~~~~-~--~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 89 TPTLFG-DTVYDNLIFPWQIRN-Q--QP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred cccccc-ccHHHHHHhHHhhcC-C--Ch--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 988876 599999876432211 1 11 123455677777774 344555667888999999999999875
No 154
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.6e-21 Score=165.51 Aligned_cols=143 Identities=18% Similarity=0.278 Sum_probs=107.5
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---h-hhhhhceEEc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---S-QFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~-~~~~~~g~v~ 107 (240)
-+|+.+.++.+++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+... . ..++.++|++
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 86 (237)
T PRK11614 8 FDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD-PRATSGRIVFDGKDITDWQTAKIMREAVAIVP 86 (237)
T ss_pred EEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC-CCCCCceEEECCEecCCCCHHHHHHhCEEEec
Confidence 35788888888999999999999999999999999999999999997 56789999999986532 1 2356799999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcC-CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRS-DTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.+++.+++.+++.+..... . .....+.+..+++.+ ++.+.........|+++++++.++++++..
T Consensus 87 q~~~~~~~~tv~~~l~~~~~~~--~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 87 EGRRVFSRMTVEENLAMGGFFA--E---RDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred cCcccCCCCcHHHHHHHhhhcc--C---hhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999888899999987643211 1 111122334444444 244434445556788999999999999865
No 155
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.86 E-value=4.5e-21 Score=162.68 Aligned_cols=139 Identities=24% Similarity=0.328 Sum_probs=111.0
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
+|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+..... .+.++|++|++.+
T Consensus 4 ~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~ 81 (223)
T TIGR03740 4 KNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI-LRPTSGEIIFDGHPWTRKD-LHKIGSLIESPPL 81 (223)
T ss_pred EeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEeccccc-cccEEEEcCCCCc
Confidence 5778888888999999999999999999999999999999999997 5688999999997654222 2468999999988
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+++.+..... . .. ...+.++++.+++.+.........|+++++++.+++++...
T Consensus 82 ~~~~t~~~~~~~~~~~~-~--~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 82 YENLTARENLKVHTTLL-G--LP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred cccCCHHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 88899999987643221 1 11 12355667777777666666667888999999999999875
No 156
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.7e-21 Score=167.83 Aligned_cols=144 Identities=22% Similarity=0.236 Sum_probs=112.1
Q ss_pred CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhhceEE
Q psy310 33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCYI 106 (240)
Q Consensus 33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~~g~v 106 (240)
+|+.+.++ .+++|+++||+|.+||+++|+||||||||||+++|+|+ .++.+|+|.++|.+... ...++.++|+
T Consensus 5 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v 83 (275)
T PRK13639 5 RDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI-LKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIV 83 (275)
T ss_pred EEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCccEEEECCEECccccchHHHHHhheEEE
Confidence 46777775 46799999999999999999999999999999999997 56789999999987531 2345779999
Q ss_pred ccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++. .+...++.+++.+..... ........+.+..+++.+++.+.........|+++.+++.+++++...
T Consensus 84 ~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 84 FQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred eeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99973 333569999987643221 122333345567788888887776667777889999999999999875
No 157
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.4e-21 Score=165.99 Aligned_cols=145 Identities=20% Similarity=0.239 Sum_probs=109.8
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCC-----chhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERN-----LSQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~-----~~~~~~~~ 103 (240)
+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|++. + |++|+|.++|.+.. ....++.+
T Consensus 17 ~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i 96 (260)
T PRK10744 17 RNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKV 96 (260)
T ss_pred EEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcce
Confidence 577888888889999999999999999999999999999999999854 2 47999999997752 12346679
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++|++.+++ .++.+++.+..... .........+.+.++++.+++. +.........|+++++++.+++++..
T Consensus 97 ~~~~q~~~~~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 173 (260)
T PRK10744 97 GMVFQKPTPFP-MSIYDNIAFGVRLF--EKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI 173 (260)
T ss_pred EEEecCCccCc-CcHHHHHhhhHhhc--CCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC
Confidence 99999998776 79999987643221 1122223334456666666652 33344556678899999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 174 ~ 174 (260)
T PRK10744 174 R 174 (260)
T ss_pred C
Confidence 5
No 158
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.8e-21 Score=165.53 Aligned_cols=148 Identities=23% Similarity=0.228 Sum_probs=113.8
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh-hhhhceEEc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ-FRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~ 107 (240)
-+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... .. .+..++|++
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 86 (255)
T PRK11300 8 VSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF-YKPTGGTILLRGQHIEGLPGHQIARMGVVRTF 86 (255)
T ss_pred EeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC-cCCCcceEEECCEECCCCCHHHHHhcCeEEec
Confidence 46788888888999999999999999999999999999999999997 56789999999986532 11 233578999
Q ss_pred ccccccccccHHHHHHHHHHHh--------cCC--Cc--cHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHH
Q psy310 108 QDNQLHANLTVEEAMNVATALK--------LGK--DL--TKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLAL 175 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~--------~~~--~l--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (240)
|++.+++.+++.+++.+..... ... .. ........+.++++.+++.+.........|+++++++.+++
T Consensus 87 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~ 166 (255)
T PRK11300 87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIAR 166 (255)
T ss_pred cCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHH
Confidence 9999999999999988643210 000 00 11122344666777778776666667778899999999999
Q ss_pred HHhcc
Q psy310 176 AMYNR 180 (240)
Q Consensus 176 ~~~~~ 180 (240)
++...
T Consensus 167 al~~~ 171 (255)
T PRK11300 167 CMVTQ 171 (255)
T ss_pred HHhcC
Confidence 99875
No 159
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.3e-21 Score=168.84 Aligned_cols=148 Identities=17% Similarity=0.238 Sum_probs=115.5
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
.-+|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....+..++|++
T Consensus 9 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 87 (265)
T PRK10253 9 RGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL-MTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87 (265)
T ss_pred EEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC-CCCCCcEEEECCEEhhhCCHHHHhhheEEee
Confidence 356888899888999999999999999999999999999999999997 5678999999997652 223456799999
Q ss_pred ccccccccccHHHHHHHHHHHhc--CCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKL--GKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~--~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.+++..++.+++.+...... ..... ......+..+++.+++.+.........|+++++++.+++++...
T Consensus 88 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 88 QNATTPGDITVQELVARGRYPHQPLFTRWR-KEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred ccCcCCCCCcHHHHHHhCcccccccccCCC-HHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 99988888999998865311100 00011 12234566777878887766677777899999999999999875
No 160
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.86 E-value=5.7e-21 Score=163.70 Aligned_cols=144 Identities=26% Similarity=0.328 Sum_probs=113.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++.
T Consensus 4 ~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~ 82 (237)
T TIGR00968 4 ANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL-EQPDSGRIRLNGQDATRVHARDRKIGFVFQHYA 82 (237)
T ss_pred EEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEEcCcCChhhcCEEEEecChh
Confidence 4667777788999999999999999999999999999999999997 56789999999976532 223467999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++..++.|++.+..... ........+.+.++++.+++...........|.++++++.+++++...
T Consensus 83 ~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 83 LFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred hccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 988899999987653321 112222234556777777776656666667888999999999999875
No 161
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.86 E-value=4.4e-21 Score=166.11 Aligned_cols=147 Identities=22% Similarity=0.275 Sum_probs=112.3
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQD 109 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q~ 109 (240)
+|+.+.++++++|+++||+|++||+++|+|+|||||||||++|+|+ .+|.+|+|.++|.+... ...++.++|++|+
T Consensus 5 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 83 (256)
T TIGR03873 5 SRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA-LRPDAGTVDLAGVDLHGLSRRARARRVALVEQD 83 (256)
T ss_pred EeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-CCCCCCEEEECCEEcccCCHHHHhhheEEeccc
Confidence 4677888888999999999999999999999999999999999997 56789999999976532 2334568999999
Q ss_pred ccccccccHHHHHHHHHHHhcC-CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 110 NQLHANLTVEEAMNVATALKLG-KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.++...++.+++.+....... .........+.+.++++.+++.+.........++++++++.+++++...
T Consensus 84 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (256)
T TIGR03873 84 SDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE 155 (256)
T ss_pred CccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 8777788999998763211000 0011112234566677777776666666677889999999999999875
No 162
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.4e-21 Score=168.22 Aligned_cols=144 Identities=17% Similarity=0.214 Sum_probs=107.4
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~ 102 (240)
-+|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|++.+ |++|+|.++|.+.. ....++.
T Consensus 16 i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~ 95 (269)
T PRK14259 16 LQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95 (269)
T ss_pred EEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhc
Confidence 46888899888999999999999999999999999999999999998543 58999999997642 2234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++ .|+.|++.+..... .... ...+.+.++++.+++ .+.........++++++++.+++++.
T Consensus 96 i~~v~q~~~l~~-~tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~ 170 (269)
T PRK14259 96 IGMVFQQPNPFP-KSIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA 170 (269)
T ss_pred eEEEccCCccch-hhHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 999999998877 49999987653221 1111 122334444554443 23334445567889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 171 ~~ 172 (269)
T PRK14259 171 IE 172 (269)
T ss_pred cC
Confidence 75
No 163
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.86 E-value=3.9e-21 Score=174.07 Aligned_cols=139 Identities=20% Similarity=0.260 Sum_probs=112.1
Q ss_pred CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhhhhceEE
Q psy310 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFRKLSCYI 106 (240)
Q Consensus 34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~~~~g~v 106 (240)
|+.+.++++.+ ++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|+
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl-~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL-TRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 57788887664 89999999999999999999999999999997 56789999999976521 2345679999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++.+++.+|+.+++.+..... ......+.+.++++.+++.+.........|++++|++.+++++...
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999999999999998653211 1122344567788888888777777778899999999999999875
No 164
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.5e-21 Score=165.81 Aligned_cols=146 Identities=21% Similarity=0.241 Sum_probs=109.9
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~ 102 (240)
-+|+.+.++++++|+++||+|.+||+++|+|+|||||||||++|+|++.+ +++|+|.++|.++.. ...++.
T Consensus 23 ~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 102 (267)
T PRK14237 23 TKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKH 102 (267)
T ss_pred EeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcc
Confidence 45788888889999999999999999999999999999999999998543 579999999987531 234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++ .++.+++.+..... . ...+....+.+.++++.+++. +.........++++++++.++++++
T Consensus 103 i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~ 179 (267)
T PRK14237 103 IGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA 179 (267)
T ss_pred eEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 999999988876 59999998653221 1 112223334455566666553 2334445567888999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 180 ~~ 181 (267)
T PRK14237 180 VK 181 (267)
T ss_pred cC
Confidence 75
No 165
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=8e-21 Score=164.03 Aligned_cols=147 Identities=17% Similarity=0.226 Sum_probs=110.9
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCCc-----hhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERNL-----SQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~~-----~~~~~~ 102 (240)
-+|+++.++++++|+++||+|.+||+++|+|+||||||||+++|+|++. + +++|+|.++|.++.. ...++.
T Consensus 7 ~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~ 86 (252)
T PRK14256 7 LEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRR 86 (252)
T ss_pred EEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhcc
Confidence 4678888888899999999999999999999999999999999999753 2 258999999987531 234667
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++.+++.+++.+..... .........+.+..+++.+++.. .........++++++++.+++++.
T Consensus 87 i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 164 (252)
T PRK14256 87 VGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA 164 (252)
T ss_pred EEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence 999999999988899999987643221 11122222344566666666532 233445567889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 165 ~~ 166 (252)
T PRK14256 165 VK 166 (252)
T ss_pred cC
Confidence 65
No 166
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.86 E-value=4.9e-21 Score=166.32 Aligned_cols=148 Identities=25% Similarity=0.268 Sum_probs=113.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC--CccEEEECCccCCc--------hhhhhh
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG--TEGSITINGHERNL--------SQFRKL 102 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~--~~G~V~v~g~~~~~--------~~~~~~ 102 (240)
.|+++.++++++|+++||+|.+||+++|+|||||||||||++|+|++.+. .+|+|.++|.++.. ...++.
T Consensus 8 ~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 87 (262)
T PRK09984 8 EKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRAN 87 (262)
T ss_pred eeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhh
Confidence 57788888889999999999999999999999999999999999985432 25999999976531 223567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcC-----CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHH
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLG-----KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~-----~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
++|++|++.+++.+|+.+++.+....... ........+..+.++++.+++.+.........+.++++++.+++++
T Consensus 88 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 167 (262)
T PRK09984 88 TGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARAL 167 (262)
T ss_pred eEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHH
Confidence 89999999988889999998754211000 0001122344567788888887666666677889999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
...
T Consensus 168 ~~~ 170 (262)
T PRK09984 168 MQQ 170 (262)
T ss_pred hcC
Confidence 875
No 167
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=5.8e-21 Score=167.85 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=113.0
Q ss_pred CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCc---cEEEECCccCCc---hhhhhhce
Q psy310 33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE---GSITINGHERNL---SQFRKLSC 104 (240)
Q Consensus 33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~---G~V~v~g~~~~~---~~~~~~~g 104 (240)
.|+.+.+++ +++|+++||+|.+||+++|+||||||||||+++|+|++ +|.+ |+|.++|.+... ...++.++
T Consensus 9 ~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~-~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig 87 (282)
T PRK13640 9 KHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL-LPDDNPNSKITVDGITLTAKTVWDIREKVG 87 (282)
T ss_pred EEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc-CCCCCCCcEEEECCEECCcCCHHHHHhheE
Confidence 467777754 57999999999999999999999999999999999984 4555 999999987632 23456799
Q ss_pred EEccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 105 YIMQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 105 ~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++|++. ++...++.+++.+..... ........+.+..+++.+++.+.....+...|+++.+++.+++++...
T Consensus 88 ~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 88 IVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 9999984 566789999997643221 223334445677788888887766677777889999999999999875
No 168
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.9e-21 Score=165.07 Aligned_cols=139 Identities=27% Similarity=0.344 Sum_probs=108.6
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQD 109 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~ 109 (240)
+|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++. ....++.++|++|+
T Consensus 7 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~ 85 (241)
T PRK14250 7 KEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL-IDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQ 85 (241)
T ss_pred EeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEEhhhcChHHhhhcEEEEecC
Confidence 5678888888999999999999999999999999999999999997 5678999999997652 22345679999999
Q ss_pred ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+++ .++.+++.+..... . . ....+.++++.+++. +.........++++++++.+++++...
T Consensus 86 ~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 86 PHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred chhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 88775 68999876532211 1 1 123455667777775 445556667888999999999999875
No 169
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.2e-20 Score=161.58 Aligned_cols=143 Identities=23% Similarity=0.277 Sum_probs=112.9
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~ 111 (240)
.|+.+.+++. +|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++.
T Consensus 4 ~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~-~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~ 81 (235)
T cd03299 4 ENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF-IKPDSGKILLNGKDITNLPPEKRDISYVPQNYA 81 (235)
T ss_pred EeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-cCCCceEEEECCEEcCcCChhHcCEEEEeecCc
Confidence 3566777664 89999999999999999999999999999999997 56789999999986532 223567999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+++.+++.+..... ........+.+.++++.+++.+.........++++++++.++++++..
T Consensus 82 ~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 147 (235)
T cd03299 82 LFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVN 147 (235)
T ss_pred cCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcC
Confidence 888899999987653221 122233344566677778887766666777889999999999999875
No 170
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=8.7e-21 Score=166.35 Aligned_cols=143 Identities=20% Similarity=0.183 Sum_probs=108.1
Q ss_pred CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhh
Q psy310 33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFR 100 (240)
Q Consensus 33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~ 100 (240)
+|+.+.+++ +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...+
T Consensus 6 ~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (280)
T PRK13649 6 QNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL-HVPTQGSVRVDDTLITSTSKNKDIKQIR 84 (280)
T ss_pred EEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEccccccccCHHHHH
Confidence 466777754 4699999999999999999999999999999999997 56789999999976531 2345
Q ss_pred hhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHH
Q psy310 101 KLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 101 ~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
+.++|++|++ .++ ..++.+++.+..... ........+.++.+++.+++. ..........|+++++++.+++++
T Consensus 85 ~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 85 KKVGLVFQFPESQLF-EETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred hheEEEeeChhhhhc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 6799999997 344 469999987643221 122233344566677777775 344556667889999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
...
T Consensus 161 ~~~ 163 (280)
T PRK13649 161 AME 163 (280)
T ss_pred HcC
Confidence 875
No 171
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.1e-20 Score=169.56 Aligned_cols=136 Identities=21% Similarity=0.253 Sum_probs=108.4
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceEEcccc--ccc
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCYIMQDN--QLH 113 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~v~Q~~--~~~ 113 (240)
..+|++|||+|.+||++||+|+||||||||+++|+|+ .++.+|+|.++|.++.. ..+++.++||||++ .+.
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl-~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI-ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC-CCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence 5799999999999999999999999999999999997 56789999999987531 23456799999998 477
Q ss_pred ccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 114 ANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 114 ~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+++.+++....... .........+.+.++++.+++.. ....+....|++++|++.+++++...
T Consensus 107 p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~ 172 (327)
T PRK11308 107 PRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLD 172 (327)
T ss_pred CccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcC
Confidence 7889988876543322 12234445567788888888853 45666778899999999999999875
No 172
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.86 E-value=9.1e-21 Score=165.07 Aligned_cols=137 Identities=21% Similarity=0.315 Sum_probs=104.5
Q ss_pred CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---h---hhhhhceEEcccc--cc
Q psy310 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---S---QFRKLSCYIMQDN--QL 112 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~---~~~~~~g~v~Q~~--~~ 112 (240)
++.+|+++||+|++||+++|+|+|||||||||++|+|+ .+|.+|+|.++|.+... . ..++.++|++|++ .+
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL-EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence 46799999999999999999999999999999999997 56789999999976531 1 1356799999997 35
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+.+++.+++.+..... .........+.+.++++.+++. +.........++++++++.+++++...
T Consensus 102 ~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~ 168 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVK 168 (265)
T ss_pred CCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 66789999886543211 1122223344566777777775 445556667889999999999999875
No 173
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.86 E-value=1.4e-20 Score=159.73 Aligned_cols=144 Identities=23% Similarity=0.208 Sum_probs=106.9
Q ss_pred CCceecCCC-------ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC--c--cCC---chh
Q psy310 33 TNNNCEPNE-------KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--H--ERN---LSQ 98 (240)
Q Consensus 33 ~~~~~~~~~-------~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g--~--~~~---~~~ 98 (240)
+|+.+.++. +++|+++||+|.+||+++|+|+||||||||+++|+|+ .+|++|+|.+++ . +.. ...
T Consensus 5 ~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~~~g~~~~~~~~~~~~ 83 (224)
T TIGR02324 5 EDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN-YLPDSGRILVRHEGAWVDLAQASPRE 83 (224)
T ss_pred EeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCeEEEecCCCccchhhcCHHH
Confidence 456666642 4799999999999999999999999999999999997 557899999974 2 221 111
Q ss_pred ---h-hhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHH
Q psy310 99 ---F-RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLL 173 (240)
Q Consensus 99 ---~-~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 173 (240)
. ++.++|++|++.+++.+++.|++.+..... ........+.+.++++.+++.+. ........++++++++.+
T Consensus 84 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 84 VLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 1 346899999999999999999987643221 12222334456667777777653 344566788899999999
Q ss_pred HHHHhcc
Q psy310 174 ALAMYNR 180 (240)
Q Consensus 174 ~~~~~~~ 180 (240)
++++...
T Consensus 161 aral~~~ 167 (224)
T TIGR02324 161 ARGFIAD 167 (224)
T ss_pred HHHHhcC
Confidence 9999875
No 174
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.1e-20 Score=159.34 Aligned_cols=138 Identities=25% Similarity=0.291 Sum_probs=110.3
Q ss_pred CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-------chhhhhhceEE
Q psy310 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-------LSQFRKLSCYI 106 (240)
Q Consensus 34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-------~~~~~~~~g~v 106 (240)
|++++|+++.+ ++||+|++ |+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|+
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL-EKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 67889998876 99999999 99999999999999999999997 5678999999997642 11245679999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++.+++.+++.+++.+..... ......+.+.++++.+++.+.........|+++++++.+++++...
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 99999888899999987643211 1222344566778888887666666677889999999999999875
No 175
>PLN03211 ABC transporter G-25; Provisional
Probab=99.86 E-value=9e-21 Score=183.90 Aligned_cols=148 Identities=32% Similarity=0.444 Sum_probs=116.6
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC-CccEEEECCccCCchhhhhhceEEcccc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG-TEGSITINGHERNLSQFRKLSCYIMQDN 110 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~-~~G~V~v~g~~~~~~~~~~~~g~v~Q~~ 110 (240)
..|+.+.++++.+|+++||+|++||++||+|||||||||||++|+|+..+. .+|+|.++|.+... ..++.++||+|++
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~ 149 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDD 149 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch-hhccceEEECccc
Confidence 345667888899999999999999999999999999999999999974432 48999999987642 3345689999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhh-----hccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR-----CFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++.+|++|++.+...+.......+....+.++++++.+++.+..+ ....+.++++++++.+++++...
T Consensus 150 ~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~ 224 (659)
T PLN03211 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 224 (659)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhC
Confidence 99999999999988654433323334444566777888888766542 23456789999999999999875
No 176
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.86 E-value=1.2e-20 Score=164.51 Aligned_cols=145 Identities=23% Similarity=0.259 Sum_probs=108.5
Q ss_pred CCceecCC---------CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhh
Q psy310 33 TNNNCEPN---------EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFR 100 (240)
Q Consensus 33 ~~~~~~~~---------~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~ 100 (240)
.|+.+.++ .+++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.++.. ...+
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~ 86 (267)
T PRK15112 8 RNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM-IEPTSGELLIDDHPLHFGDYSYRS 86 (267)
T ss_pred eceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC-CCCCCCEEEECCEECCCCchhhHh
Confidence 45666664 35799999999999999999999999999999999997 56789999999977532 1223
Q ss_pred hhceEEccccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHH
Q psy310 101 KLSCYIMQDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 101 ~~~g~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
+.++|++|++. +.+.+++.+++.+...... ........+.+..+++.+++. +.........|+++++++.+++++
T Consensus 87 ~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 164 (267)
T PRK15112 87 QRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARAL 164 (267)
T ss_pred ccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHH
Confidence 56899999975 4566788888775432211 122233344566778888874 445555667888999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
...
T Consensus 165 ~~~ 167 (267)
T PRK15112 165 ILR 167 (267)
T ss_pred HhC
Confidence 875
No 177
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.4e-20 Score=162.58 Aligned_cols=146 Identities=20% Similarity=0.211 Sum_probs=108.9
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCCc-----hhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERNL-----SQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~~-----~~~~~~ 102 (240)
-+|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|++. + +++|+|.++|.+... ...++.
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 88 (253)
T PRK14242 9 ARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRR 88 (253)
T ss_pred EeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhc
Confidence 3578888888889999999999999999999999999999999999742 2 479999999976531 234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++ .++.+++.+..... . ........+.+..+++.+++.+ .........+++++|++.+++++.
T Consensus 89 i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 165 (253)
T PRK14242 89 VGMVFQKPNPFP-KSIFENVAYGLRVN-G-VKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA 165 (253)
T ss_pred EEEEecCCCCCc-CcHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 999999998877 59999987653221 1 1112223445556666666532 233345567889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 166 ~~ 167 (253)
T PRK14242 166 VE 167 (253)
T ss_pred cC
Confidence 75
No 178
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.4e-20 Score=162.26 Aligned_cols=145 Identities=21% Similarity=0.270 Sum_probs=108.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~~ 103 (240)
+|+.+.++++++|+++||+|++||+++|+|+|||||||||++|+|++.+ +.+|+|.++|.+... ...++.+
T Consensus 7 ~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i 86 (250)
T PRK14262 7 ENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKV 86 (250)
T ss_pred EeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhE
Confidence 5778888888999999999999999999999999999999999997543 378999999976532 2345679
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++|++.+++ .++.+++.+..... . ........+.+..+++.+++. +.........++++++++.++++++.
T Consensus 87 ~~~~q~~~~~~-~tv~e~l~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~ 163 (250)
T PRK14262 87 GMVFQKPTPFP-MSIYDNVAFGPRIH-G-VKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV 163 (250)
T ss_pred EEEecCCccCc-ccHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC
Confidence 99999998877 89999987653221 1 111222233445555555543 22344556678899999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 164 ~ 164 (250)
T PRK14262 164 E 164 (250)
T ss_pred C
Confidence 5
No 179
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.1e-20 Score=166.67 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=108.1
Q ss_pred CCceecCCCc-----eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC--------chhh
Q psy310 33 TNNNCEPNEK-----TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--------LSQF 99 (240)
Q Consensus 33 ~~~~~~~~~~-----~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~--------~~~~ 99 (240)
+|+.+.++++ ++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ....
T Consensus 10 ~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 88 (289)
T PRK13645 10 DNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL-IISETGQTIVGDYAIPANLKKIKEVKRL 88 (289)
T ss_pred EEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCEEccccccccccHHHH
Confidence 5677777654 499999999999999999999999999999999997 5678999999997642 1234
Q ss_pred hhhceEEcccccc-cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHH
Q psy310 100 RKLSCYIMQDNQL-HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 100 ~~~~g~v~Q~~~~-~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
++.++|++|++.. ....++.+++.+..... ........+.+..+++.+++. +.........|+++++++.+++++
T Consensus 89 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral 165 (289)
T PRK13645 89 RKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII 165 (289)
T ss_pred hccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 5678999999742 22458999887653221 122233334556677777773 455556677889999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
+..
T Consensus 166 ~~~ 168 (289)
T PRK13645 166 AMD 168 (289)
T ss_pred HhC
Confidence 875
No 180
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.5e-20 Score=164.88 Aligned_cols=147 Identities=18% Similarity=0.194 Sum_probs=110.3
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc----hhhhhh
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL----SQFRKL 102 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~----~~~~~~ 102 (240)
.-+|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|++.+ +++|+|.++|.++.. ...+..
T Consensus 23 ~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 102 (276)
T PRK14271 23 AAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRR 102 (276)
T ss_pred EEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhh
Confidence 347899999999999999999999999999999999999999999998543 479999999976531 234667
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++ .++.+++.+..... ...........+..++..+++.+ .........++++++++.++++++
T Consensus 103 i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~ 179 (276)
T PRK14271 103 VGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA 179 (276)
T ss_pred eEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 999999998877 79999887643221 11122223334455566666542 223345567889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 180 ~~ 181 (276)
T PRK14271 180 VN 181 (276)
T ss_pred cC
Confidence 75
No 181
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.3e-20 Score=164.46 Aligned_cols=144 Identities=19% Similarity=0.191 Sum_probs=111.3
Q ss_pred CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
.|+.+.+++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+.. ....++.++|++
T Consensus 11 ~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 89 (269)
T PRK13648 11 KNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI-EKVKSGEIFYNNQAITDDNFEKLRKHIGIVF 89 (269)
T ss_pred EEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEECCcCCHHHHHhheeEEE
Confidence 567777765 4599999999999999999999999999999999997 5678999999998653 224456799999
Q ss_pred cccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++. ++...++.+++.+..... ........+.+..+++.+++.+.........++++++++.+++++...
T Consensus 90 q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (269)
T PRK13648 90 QNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALN 160 (269)
T ss_pred eChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 9985 566678888876643221 122233344566777877877666666677888999999999999875
No 182
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.6e-20 Score=161.92 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=108.5
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-C---CccEEEECCccCCc-----hhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-G---TEGSITINGHERNL-----SQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~---~~G~V~v~g~~~~~-----~~~~~~~ 103 (240)
.|+++.++++++|+++||+|++||+++|+||||||||||+++|+|+..+ | ++|+|.++|.+... ...++.+
T Consensus 7 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 86 (250)
T PRK14240 7 KDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRV 86 (250)
T ss_pred EEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccE
Confidence 5788888888999999999999999999999999999999999997432 2 68999999987531 2345679
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++|++.+++ .++.+++.+..... . ........+.+.++++.+++. +.........++++++++.++++++.
T Consensus 87 ~~~~q~~~~~~-~t~~~ni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14240 87 GMVFQQPNPFP-MSIYDNVAYGPRTH-G-IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV 163 (250)
T ss_pred EEEecCCccCc-ccHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 99999988877 89999998653221 1 112222344455555555542 23344556678899999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 164 ~ 164 (250)
T PRK14240 164 E 164 (250)
T ss_pred C
Confidence 5
No 183
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.5e-20 Score=162.19 Aligned_cols=145 Identities=19% Similarity=0.237 Sum_probs=108.6
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~~ 103 (240)
+|+.+.++++++|+++||+|.+||+++|+|+|||||||||++|+|+..+ +++|+|.++|.++.. ...++.+
T Consensus 8 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 87 (251)
T PRK14270 8 KNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRV 87 (251)
T ss_pred EEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhhe
Confidence 5677888888899999999999999999999999999999999997543 378999999987531 2345679
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++|++.+++ .++.+++.+..... . ........+.+..+++.+++. +.........+.++++++.+++++..
T Consensus 88 ~~~~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 164 (251)
T PRK14270 88 GMVFQKPNPFP-MSIYDNVAYGPRIH-G-IKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV 164 (251)
T ss_pred EEEecCCCcCC-CcHHHHHHhHHHhc-C-CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999998876 89999987653221 1 111222334455566666542 23344556678899999999999986
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 165 ~ 165 (251)
T PRK14270 165 K 165 (251)
T ss_pred C
Confidence 4
No 184
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.6e-20 Score=161.79 Aligned_cols=146 Identities=21% Similarity=0.259 Sum_probs=107.9
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC----chhhhhhc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN----LSQFRKLS 103 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~----~~~~~~~~ 103 (240)
-.|+.+.++++.+|+++||+|.+||+++|+||||||||||+++|+|++.+ +++|+|.++|.++. ....++.+
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 85 (249)
T PRK14253 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKV 85 (249)
T ss_pred EeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhhe
Confidence 35788888888999999999999999999999999999999999997543 36899999997652 22345679
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++|++.+++ .++.+++.+..... . ...+....+.+..+++.+++. +.........++++++++.+++++..
T Consensus 86 ~~~~q~~~~~~-~tv~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (249)
T PRK14253 86 GMVFQKPNPFP-MSIYENVAYGLRAQ-G-IKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM 162 (249)
T ss_pred eEEecCCCcCc-ccHHHHHHhHHHhc-C-CCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence 99999998886 89999987653221 1 111222233444455555442 23334455678899999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 163 ~ 163 (249)
T PRK14253 163 E 163 (249)
T ss_pred C
Confidence 5
No 185
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=5.6e-21 Score=167.25 Aligned_cols=144 Identities=22% Similarity=0.278 Sum_probs=110.0
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC--------ccEEEECCccCC---chhhhh
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT--------EGSITINGHERN---LSQFRK 101 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~--------~G~V~v~g~~~~---~~~~~~ 101 (240)
+|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|++ +|. +|+|.++|.+.. ....++
T Consensus 5 ~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~-~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (272)
T PRK13547 5 DHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL-TGGGAPRGARVTGDVTLNGEPLAAIDAPRLAR 83 (272)
T ss_pred EEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCcccccccCCceEEEECCEEcccCCHHHHHh
Confidence 46788888889999999999999999999999999999999999974 455 899999997653 223455
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcC--CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLG--KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~--~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
.++|++|++..+..+++.|++.+....... .... ....+.+..+++.+++.+.........|+++++++.++++++
T Consensus 84 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 161 (272)
T PRK13547 84 LRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALT-HRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA 161 (272)
T ss_pred hcEEecccCCCCCCCcHHHHHhhcccccccccccCC-HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 689999998766678999998764211100 0111 122345666777778776666666778899999999999888
No 186
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.85 E-value=1.3e-20 Score=158.78 Aligned_cols=152 Identities=25% Similarity=0.342 Sum_probs=113.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.++. ++.++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|++.
T Consensus 4 ~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 80 (213)
T TIGR01277 4 DKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF-IEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80 (213)
T ss_pred EeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEEcccCChhccceEEEeccCc
Confidence 355666653 46899999999999999999999999999999997 56789999999986531 234567999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeeccce
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVS 191 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs 191 (240)
+++.+++.+++.+...... .... .....+.++++.+++.+.....+...+.++++++.+++++... .+-.+++...
T Consensus 81 ~~~~~t~~en~~~~~~~~~--~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~-p~llllDEPt 156 (213)
T TIGR01277 81 LFAHLTVRQNIGLGLHPGL--KLNA-EQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRP-NPILLLDEPF 156 (213)
T ss_pred cCCCCcHHHHHHhHhhccC--CccH-HHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcC-CCEEEEcCCC
Confidence 9888999999875422111 1111 2234456677888887766666777889999999999999875 2333444443
No 187
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.5e-20 Score=162.24 Aligned_cols=146 Identities=21% Similarity=0.224 Sum_probs=107.8
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~ 102 (240)
-+|+.+.++.+++|+++||+|.+||+++|+|+||||||||+++|+|++.+ +.+|+|.++|.+... ...++.
T Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~ 86 (251)
T PRK14251 7 AKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKE 86 (251)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhcc
Confidence 35788888888999999999999999999999999999999999998542 479999999986521 234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.++. .++.+++.+..... . ........+.+..+++.+++. +.........++++++++.+++++.
T Consensus 87 i~~~~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~ 163 (251)
T PRK14251 87 VGMVFQQPTPFP-FSVYDNVAYGLKIA-G-VKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA 163 (251)
T ss_pred EEEEecCCccCC-CcHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence 999999998775 79999987643221 1 111222233445566665552 2233445567888999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 164 ~~ 165 (251)
T PRK14251 164 VR 165 (251)
T ss_pred cC
Confidence 74
No 188
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.5e-20 Score=164.79 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=112.7
Q ss_pred CCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEE
Q psy310 33 TNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYI 106 (240)
Q Consensus 33 ~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v 106 (240)
+|+.+.++. .++|+++||+|.+||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.++.. ...++.++|+
T Consensus 8 ~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 86 (277)
T PRK13642 8 ENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL-FEEFEGKVKIDGELLTAENVWNLRRKIGMV 86 (277)
T ss_pred EEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCCEEEECCEECCcCCHHHHhcceEEE
Confidence 567777763 3599999999999999999999999999999999997 56889999999987532 3456779999
Q ss_pred ccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++. .+...++.+++.+..... ........+.++.+++.+++.+.........++++++++.+++++...
T Consensus 87 ~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 87 FQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred EECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 99985 566789999997643211 122333345567777877877666666677889999999999999876
No 189
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.6e-20 Score=164.21 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=107.9
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCC-----chhhhh
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERN-----LSQFRK 101 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~-----~~~~~~ 101 (240)
.-+|+.+.++++++|+++||+|.+||+++|+|+|||||||||++|+|++. + |++|+|.++|.+.. ....++
T Consensus 26 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 105 (271)
T PRK14238 26 DTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRT 105 (271)
T ss_pred EEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhh
Confidence 35788888888899999999999999999999999999999999999744 2 58999999997652 123456
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCC----cchhhhhccCCCCCchhhHHHHHHHH
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD----TNHAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
.++|++|++.++. .++.+++.+..... ...........+..+++.++ +.+.........++++++++.+++++
T Consensus 106 ~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL 182 (271)
T PRK14238 106 NVGMVFQKPNPFP-KSIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL 182 (271)
T ss_pred hEEEEecCCcccc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 7999999998876 49999988653221 11112222333444444432 23333445566788999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
+..
T Consensus 183 ~~~ 185 (271)
T PRK14238 183 AIE 185 (271)
T ss_pred HcC
Confidence 875
No 190
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1e-20 Score=171.24 Aligned_cols=135 Identities=23% Similarity=0.298 Sum_probs=109.7
Q ss_pred CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-------chhhhhhceEE
Q psy310 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-------LSQFRKLSCYI 106 (240)
Q Consensus 34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-------~~~~~~~~g~v 106 (240)
|+.+.++++.+ ++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|+
T Consensus 5 ~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v 81 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGL-TRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYV 81 (352)
T ss_pred EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEccccccccccchhhCCEEEE
Confidence 66778877543 89999999999999999999999999999997 5678999999997642 22346789999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++.+++.+++.+++.+... . ...+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus 82 ~q~~~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~ 146 (352)
T PRK11144 82 FQDARLFPHYKVRGNLRYGMA----K-----SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred cCCcccCCCCcHHHHHHhhhh----h-----hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 999999999999999876421 0 1133466677878887766777778899999999999999875
No 191
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.7e-20 Score=165.13 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=109.9
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~ 102 (240)
-+|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|++.+ |++|+|.++|.+.. ....++.
T Consensus 42 i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~ 121 (285)
T PRK14254 42 ARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRR 121 (285)
T ss_pred EEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhcc
Confidence 46888899888999999999999999999999999999999999998543 57999999997652 1234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++. ++.+++.+...... ... ...+.+..+++.+++. +.........++++++++.+++++.
T Consensus 122 i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~ 196 (285)
T PRK14254 122 IGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA 196 (285)
T ss_pred EEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 9999999887764 99999876533221 111 2233456666666653 2334455668889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 197 ~~ 198 (285)
T PRK14254 197 PD 198 (285)
T ss_pred cC
Confidence 65
No 192
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.5e-20 Score=168.13 Aligned_cols=145 Identities=20% Similarity=0.233 Sum_probs=111.1
Q ss_pred cCCCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC----------
Q psy310 31 TNTNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---------- 95 (240)
Q Consensus 31 ~~~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---------- 95 (240)
.-+|+.+.|++ +++|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+..
T Consensus 23 ~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl-~~p~~G~I~i~g~~~~~~~~~~~~~~ 101 (320)
T PRK13631 23 RVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL-IKSKYGTIQVGDIYIGDKKNNHELIT 101 (320)
T ss_pred EEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCeEEECCEEcccccccccccc
Confidence 34677777764 4699999999999999999999999999999999998 5678999999986542
Q ss_pred ---------chhhhhhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCC
Q psy310 96 ---------LSQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGP 163 (240)
Q Consensus 96 ---------~~~~~~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 163 (240)
....++.++||+|++ .++. .++.+++.+..... ........+.+.++++.+++. +.........
T Consensus 102 ~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 177 (320)
T PRK13631 102 NPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL 177 (320)
T ss_pred cccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 123567899999997 3444 59999987653221 123333445667778888885 4555566678
Q ss_pred CCchhhHHHHHHHHhcc
Q psy310 164 WGTFESSVLLALAMYNR 180 (240)
Q Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (240)
|++++|++.+++++...
T Consensus 178 SgGqkqRvaiAraL~~~ 194 (320)
T PRK13631 178 SGGQKRRVAIAGILAIQ 194 (320)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 89999999999999875
No 193
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2e-20 Score=162.24 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=108.3
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-C---CccEEEECCccCC-----chhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-G---TEGSITINGHERN-----LSQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~---~~G~V~v~g~~~~-----~~~~~~~ 102 (240)
-+|+.+.++++++|+++||+|++||+++|+|+|||||||||++|+|++.+ | ++|+|.++|.++. ....++.
T Consensus 15 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 94 (259)
T PRK14274 15 INGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKN 94 (259)
T ss_pred EeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhc
Confidence 45788888888999999999999999999999999999999999997542 3 5899999998753 1234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++. ++.+++.+..... .........+.+..+++.+++. +.........++++++++.++++++
T Consensus 95 i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~ 171 (259)
T PRK14274 95 IGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA 171 (259)
T ss_pred eEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 9999999988774 9999987653221 1112222334455566665553 2233445567889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 172 ~~ 173 (259)
T PRK14274 172 TN 173 (259)
T ss_pred cC
Confidence 75
No 194
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.5e-20 Score=167.11 Aligned_cols=146 Identities=20% Similarity=0.227 Sum_probs=109.9
Q ss_pred CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC---CCccEEEECCccCCc---hhhh--
Q psy310 33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS---GTEGSITINGHERNL---SQFR-- 100 (240)
Q Consensus 33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~---~~~G~V~v~g~~~~~---~~~~-- 100 (240)
+|+.+.|+. ..+|++|||+|++||++||||+||||||||+++|+|++.+ +.+|+|.++|.++.. ...+
T Consensus 7 ~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~ 86 (326)
T PRK11022 7 DKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNL 86 (326)
T ss_pred eCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHH
Confidence 456666655 4799999999999999999999999999999999998543 378999999987531 1122
Q ss_pred --hhceEEccccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch---hhhhccCCCCCchhhHHHH
Q psy310 101 --KLSCYIMQDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH---AQRCFLSGPWGTFESSVLL 173 (240)
Q Consensus 101 --~~~g~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 173 (240)
+.++||||++. +.+.+++.+.+........ .......++.+.++++.+++.+ ....+....|++++|++.+
T Consensus 87 r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~i 164 (326)
T PRK11022 87 VGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMI 164 (326)
T ss_pred hCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHH
Confidence 36899999984 6778888877654432221 1233444566778888888864 2345667788999999999
Q ss_pred HHHHhcc
Q psy310 174 ALAMYNR 180 (240)
Q Consensus 174 ~~~~~~~ 180 (240)
++++...
T Consensus 165 ArAL~~~ 171 (326)
T PRK11022 165 AMAIACR 171 (326)
T ss_pred HHHHHhC
Confidence 9999875
No 195
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=4.5e-21 Score=159.28 Aligned_cols=145 Identities=26% Similarity=0.315 Sum_probs=119.3
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQD 109 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~ 109 (240)
.|+.+...++.+++++||++.+||+++|+||||||||||||+|+|. ..|.+|++.++|.+.. ...+.+..++++|+
T Consensus 5 ~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe-l~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~ 83 (259)
T COG4559 5 ENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE-LSPDSGEVTLNGVPLNSWPPEELARHRAVLPQN 83 (259)
T ss_pred eeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc-cCCCCCeEeeCCcChhhCCHHHHHHHhhhcccC
Confidence 5788999999999999999999999999999999999999999996 5678999999998764 34567788999999
Q ss_pred ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
..+-..++|+|.+.+...-+.. .-...+..+++++.+.+.+..+...+.....+++++|++.+++.+.+
T Consensus 84 s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 84 SSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred cccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHH
Confidence 9998899999998876432211 11222445668888888999998888888888999998888776543
No 196
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.7e-20 Score=160.56 Aligned_cols=146 Identities=26% Similarity=0.281 Sum_probs=108.2
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CC---CccEEEECCccCC-----chhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SG---TEGSITINGHERN-----LSQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~---~~G~V~v~g~~~~-----~~~~~~~ 102 (240)
-+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+.. .| ++|+|.++|.+.. ....++.
T Consensus 8 ~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 87 (252)
T PRK14239 8 VSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKE 87 (252)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhc
Confidence 3678888888899999999999999999999999999999999999732 24 5899999998652 1234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++ .++.+++.+..... . ........+.+..+++.+++. +.........++++++++.+++++.
T Consensus 88 i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14239 88 IGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA 164 (252)
T ss_pred EEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 999999998876 89999987653221 1 111222334455566665542 2334455667889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 165 ~~ 166 (252)
T PRK14239 165 TS 166 (252)
T ss_pred cC
Confidence 65
No 197
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=3.9e-21 Score=156.24 Aligned_cols=146 Identities=25% Similarity=0.307 Sum_probs=124.2
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---------------
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--------------- 96 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--------------- 96 (240)
-.|+-+.||...+|++||++..+|+++.|||.||||||||||||+=+ ..|..|.|.++|..+..
T Consensus 9 v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~L-E~P~~G~I~v~geei~~k~~~~G~l~~ad~~q 87 (256)
T COG4598 9 VEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-EKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQ 87 (256)
T ss_pred hhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhh-cCCCCceEEECCeEEEeeeCCCCCeeeCCHHH
Confidence 45778999999999999999999999999999999999999999965 77899999999976421
Q ss_pred -hhhhhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHH
Q psy310 97 -SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLAL 175 (240)
Q Consensus 97 -~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (240)
..+|...++|||...++.++|+.||+.-+....+ +..+....+.++.++..+++.+..+.++...++++.|++.+++
T Consensus 88 ~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIAR 165 (256)
T COG4598 88 LQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIAR 165 (256)
T ss_pred HHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHH
Confidence 2346678999999999999999999876554333 3455666778888999999999988888889999999999999
Q ss_pred HHhcc
Q psy310 176 AMYNR 180 (240)
Q Consensus 176 ~~~~~ 180 (240)
++...
T Consensus 166 aLame 170 (256)
T COG4598 166 ALAME 170 (256)
T ss_pred HHhcC
Confidence 88764
No 198
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.4e-20 Score=161.84 Aligned_cols=146 Identities=18% Similarity=0.248 Sum_probs=108.5
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC--C--CccEEEECCccCCc-----hhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS--G--TEGSITINGHERNL-----SQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--~--~~G~V~v~g~~~~~-----~~~~~~ 102 (240)
-.|+.+.++.+++|+++||+|.+||+++|+|+|||||||||++|+|++.+ + ++|+|.++|.+... ...+..
T Consensus 10 ~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 89 (259)
T PRK14260 10 VKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQ 89 (259)
T ss_pred EEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhh
Confidence 35788888888899999999999999999999999999999999997543 2 48999999976521 234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++ .|+.|++.+..... ....+....+.+.++++.+++ .+.........++++++++.+++++.
T Consensus 90 i~~v~q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 166 (259)
T PRK14260 90 IGMVFQRPNPFP-MSIYENVAYGVRIS--AKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA 166 (259)
T ss_pred eEEEecccccCC-ccHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 999999998876 89999987653221 111222223445555665554 23334455567889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 167 ~~ 168 (259)
T PRK14260 167 IK 168 (259)
T ss_pred cC
Confidence 64
No 199
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=3.4e-21 Score=168.11 Aligned_cols=167 Identities=26% Similarity=0.290 Sum_probs=138.4
Q ss_pred CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhh-hhhceEE
Q psy310 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQF-RKLSCYI 106 (240)
Q Consensus 34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~-~~~~g~v 106 (240)
.+..+.|...-++++||+|+.||++.|+|-||||||||+|+|+++ ..|..|+|.++|.++. +..+ ++.+++|
T Consensus 33 ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL-iept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMV 111 (386)
T COG4175 33 EILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL-IEPTRGEILVDGKDIAKLSAAELRELRRKKISMV 111 (386)
T ss_pred HHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhcc-CCCCCceEEECCcchhcCCHHHHHHHHhhhhhhh
Confidence 344566677789999999999999999999999999999999997 5689999999998763 1223 3678999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhccc-----
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRI----- 181 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 181 (240)
||...++|+.||.+|..|..... +.++.++++.+.++++.+++......++...|++++|++-+++++....
T Consensus 112 FQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLM 188 (386)
T COG4175 112 FQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLM 188 (386)
T ss_pred hhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEe
Confidence 99999999999999998865432 5677888999999999999999999999999999999999888775421
Q ss_pred -------------------------ccce---eeccceeEEeCCcEEEEEc
Q psy310 182 -------------------------HEKT---ILKSVSGRLRSGELTAIMG 204 (240)
Q Consensus 182 -------------------------~~~~---il~~vsl~I~~Ge~valvG 204 (240)
-.|+ |=+|++=.++=|+.+||+-
T Consensus 189 DEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimk 239 (386)
T COG4175 189 DEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMK 239 (386)
T ss_pred cCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEec
Confidence 1223 2377777788899999984
No 200
>KOG0061|consensus
Probab=99.85 E-value=2e-20 Score=180.00 Aligned_cols=153 Identities=35% Similarity=0.545 Sum_probs=134.4
Q ss_pred CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC--CCccEEEECCccCCchhhhhhceEEccccccccccc
Q psy310 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS--GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLT 117 (240)
Q Consensus 40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~lt 117 (240)
..+.+|++||..+++||+.||+||+||||||||++|+|.... ..+|+|.++|+....+.+++..+||.||+.+++.+|
T Consensus 41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LT 120 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLT 120 (613)
T ss_pred ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccccc
Confidence 358899999999999999999999999999999999997543 479999999988877888999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccC-----CCCCchhhHHHHHHHHhcccccceeecccee
Q psy310 118 VEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLS-----GPWGTFESSVLLALAMYNRIHEKTILKSVSG 192 (240)
Q Consensus 118 v~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~il~~vsl 192 (240)
|+|.+.+.+.++++..+.+.++++++++++..+++.+.++..+. +.++++++|+.++.++...
T Consensus 121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~------------ 188 (613)
T KOG0061|consen 121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTD------------ 188 (613)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcC------------
Confidence 99999999988888777888889999999999998876666554 5788999999999999876
Q ss_pred EEeCCcEEEEEcCCCCC
Q psy310 193 RLRSGELTAIMGPSGAG 209 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsG 209 (240)
..+.++.++.||
T Consensus 189 -----P~iLflDEPTSG 200 (613)
T KOG0061|consen 189 -----PSILFLDEPTSG 200 (613)
T ss_pred -----CCEEEecCCCCC
Confidence 467777777775
No 201
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3e-20 Score=160.34 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=108.2
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCCc-----hhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERNL-----SQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~~-----~~~~~~ 102 (240)
-.|+.+.++++++|+++||+|.+||+++|+|+||||||||+++|+|+.. + |++|+|.++|.++.. ...++.
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 87 (251)
T PRK14244 8 VKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAK 87 (251)
T ss_pred eeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhh
Confidence 3577888888899999999999999999999999999999999999743 2 469999999976421 134667
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++. ++.+++.+..... ..........+.+..+++.+++.+ .........++++++++.+++++.
T Consensus 88 i~~v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 88 VGMVFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred EEEEecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999887775 8999887653221 111112223344566677777643 223344567888999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 166 ~~ 167 (251)
T PRK14244 166 VK 167 (251)
T ss_pred cC
Confidence 64
No 202
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.1e-20 Score=160.48 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=106.7
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-C---CccEEEECCccCCc-----hhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-G---TEGSITINGHERNL-----SQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~---~~G~V~v~g~~~~~-----~~~~~~~ 103 (240)
.|+++.++++.+|+++||+|++||+++|+||||||||||+++|+|+..+ | ++|+|.++|.++.. ...++.+
T Consensus 10 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 89 (253)
T PRK14261 10 KNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKI 89 (253)
T ss_pred eeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceE
Confidence 5778888888999999999999999999999999999999999997432 2 48999999987532 2345678
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++|++.+++ .++.+++.+..... ...........+.++++.+++. ..........++++++++.++++++.
T Consensus 90 ~~~~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 166 (253)
T PRK14261 90 GMVFQRPNPFP-KSIYENVAYGPRIH--GEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV 166 (253)
T ss_pred EEEecCCccCc-ccHHHHHHhhHHhc--CCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc
Confidence 99999998877 49999998754322 1111222233444555555442 22334455678889999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 167 ~ 167 (253)
T PRK14261 167 N 167 (253)
T ss_pred C
Confidence 5
No 203
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.5e-20 Score=160.40 Aligned_cols=142 Identities=27% Similarity=0.387 Sum_probs=110.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~ 111 (240)
.|+++.++... .++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|++.
T Consensus 5 ~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 81 (232)
T PRK10771 5 TDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGF-LTPASGSLTLNGQDHTTTPPSRRPVSMLFQENN 81 (232)
T ss_pred EEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCeecCcCChhhccEEEEecccc
Confidence 46777776543 389999999999999999999999999999997 56789999999986532 123457899999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+++.|++.+...... ... ....+.+.++++.+++.+.....+...|+++++++.+++++...
T Consensus 82 ~~~~~tv~e~l~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 147 (232)
T PRK10771 82 LFSHLTVAQNIGLGLNPGL--KLN-AAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVRE 147 (232)
T ss_pred cccCCcHHHHHhccccccc--CCC-HHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 8888999999875421111 111 12344567788888887777777778899999999999999875
No 204
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.7e-20 Score=159.69 Aligned_cols=145 Identities=20% Similarity=0.196 Sum_probs=107.9
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC--CCC--CccEEEECCccCCc-----hhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--TSG--TEGSITINGHERNL-----SQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~--~~~--~~G~V~v~g~~~~~-----~~~~~~~ 103 (240)
+|+.+.++++.+|+++||+|.+||+++|+|+||||||||+++|+|+. .++ ++|+|.++|.++.. ...++.+
T Consensus 7 ~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 86 (250)
T PRK14245 7 RDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNV 86 (250)
T ss_pred EEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhhe
Confidence 57888888889999999999999999999999999999999999962 233 58999999987532 2345679
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHhc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++|++.++. .++.+++.+..... .........+.+.++++.+++.+ .........++++++++.++++++.
T Consensus 87 ~~v~q~~~~~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14245 87 GMVFQRPNPFP-KSIFENVAYGLRVN--GVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV 163 (250)
T ss_pred EEEecCCccCc-ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999988776 69999987643221 11112223344566666666532 3344455678899999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 164 ~ 164 (250)
T PRK14245 164 S 164 (250)
T ss_pred C
Confidence 5
No 205
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.5e-20 Score=159.84 Aligned_cols=146 Identities=18% Similarity=0.258 Sum_probs=107.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC----CccEEEECCccCCc-----hhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITINGHERNL-----SQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~----~~G~V~v~g~~~~~-----~~~~~~~ 103 (240)
+|+++.++++++|+++||+|++||+++|+|+||||||||+++|+|++.+. ++|+|.++|.+... ...+..+
T Consensus 8 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 87 (252)
T PRK14272 8 QDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRV 87 (252)
T ss_pred eeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhcee
Confidence 57788888889999999999999999999999999999999999975432 38999999976531 2345679
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++|++.+++.+++.+++.+..... . ........+.+..++..+++ .+.........|+++++++.+++++..
T Consensus 88 ~~~~q~~~~~~~~t~~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 165 (252)
T PRK14272 88 GMVFQKPNPFPTMSVFDNVVAGLKLA-G-IRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV 165 (252)
T ss_pred EEEeccCccCcCCCHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999888899999987643221 1 11122223344444444332 223344456678899999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 166 ~ 166 (252)
T PRK14272 166 E 166 (252)
T ss_pred C
Confidence 5
No 206
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.84 E-value=5.3e-20 Score=159.49 Aligned_cols=146 Identities=16% Similarity=0.174 Sum_probs=108.9
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc-----CCc---hh----h
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-----RNL---SQ----F 99 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~-----~~~---~~----~ 99 (240)
-+|+++.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+ ... .. .
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~ 87 (258)
T PRK11701 9 VRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR-LAPDAGEVHYRMRDGQLRDLYALSEAERRRLL 87 (258)
T ss_pred EeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCEEEECCccccccccccCCHHHHHHHh
Confidence 46888888888999999999999999999999999999999999997 56789999999976 321 11 1
Q ss_pred hhhceEEccccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHH
Q psy310 100 RKLSCYIMQDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALA 176 (240)
Q Consensus 100 ~~~~g~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 176 (240)
+..++|++|++. +...+++.+++....... .. .........+.++++.+++.+ .........++++++++.++++
T Consensus 88 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lara 165 (258)
T PRK11701 88 RTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-GA-RHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARN 165 (258)
T ss_pred hcceEEEeeCcccccCccccHHHHHHHHHHHh-cc-CcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHH
Confidence 346899999974 455678888775432111 11 111223445666777777753 4455566788899999999999
Q ss_pred Hhcc
Q psy310 177 MYNR 180 (240)
Q Consensus 177 ~~~~ 180 (240)
+...
T Consensus 166 l~~~ 169 (258)
T PRK11701 166 LVTH 169 (258)
T ss_pred HhcC
Confidence 9865
No 207
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=2.9e-20 Score=154.74 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=105.6
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
+|+.+.++.+.+++ +||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+.... ..+.++|++|++.+
T Consensus 5 ~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~i~~~-~~~~~~~~~~~~~~ 81 (195)
T PRK13541 5 HQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGI-MQPSSGNIYYKNCNINNI-AKPYCTYIGHNLGL 81 (195)
T ss_pred EEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCcccChh-hhhhEEeccCCcCC
Confidence 46677777777776 9999999999999999999999999999997 568899999999765321 13458999999888
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+...++.+++.+..... . ..+.+.++++.+++.+.........++++++++.+++++...
T Consensus 82 ~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~ 141 (195)
T PRK13541 82 KLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQ 141 (195)
T ss_pred CccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcC
Confidence 88899999987643221 1 122345556666666555555666788999999999999875
No 208
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.9e-20 Score=162.93 Aligned_cols=147 Identities=20% Similarity=0.236 Sum_probs=108.8
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCCc-----hhhhh
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERNL-----SQFRK 101 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~~-----~~~~~ 101 (240)
.-+|+.+.++++.+|+++||+|.+||+++|+|+|||||||||++|+|+.. + |++|+|.++|.++.. ...++
T Consensus 41 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~ 120 (286)
T PRK14275 41 VAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRK 120 (286)
T ss_pred EEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhh
Confidence 34678888888889999999999999999999999999999999999732 3 489999999976421 12456
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHH
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
.++|++|++.+++. ++.|++.+..... . ........+.+..+++.+++ .+.........+++++|++.+++++
T Consensus 121 ~i~~v~q~~~l~~~-tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 197 (286)
T PRK14275 121 KIGMVFQKPNPFPK-SIFDNIAYGPRLH-G-INDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL 197 (286)
T ss_pred cEEEECCCCCCCcc-CHHHHHHhHHHhc-C-CCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence 79999999988764 9999998753221 1 11122223344555555544 2333445566888999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
...
T Consensus 198 ~~~ 200 (286)
T PRK14275 198 AVE 200 (286)
T ss_pred hcC
Confidence 875
No 209
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.8e-20 Score=161.16 Aligned_cols=147 Identities=22% Similarity=0.240 Sum_probs=108.7
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhh
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRK 101 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~ 101 (240)
+-+|+++.++++++|+++||+|++||+++|+|+||||||||+++|+|++.+ |++|+|.++|.++.. ...++
T Consensus 27 ~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~ 106 (272)
T PRK14236 27 EVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRR 106 (272)
T ss_pred EEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhc
Confidence 346888888888999999999999999999999999999999999998553 479999999987531 23467
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHH
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
.++|++|++.+++. ++.+++.+..... . .......++.+.++++.+++. +.........++++++++.+++++
T Consensus 107 ~i~~v~q~~~l~~~-tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 183 (272)
T PRK14236 107 RVGMVFQRPNPFPK-SIYENVVYGLRLQ-G-INNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI 183 (272)
T ss_pred cEEEEecCCccCcc-cHHHHHHHHHHhc-C-CCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 89999999888775 9999987653221 1 111122233445555555543 223334456788899999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
+..
T Consensus 184 ~~~ 186 (272)
T PRK14236 184 AIE 186 (272)
T ss_pred HCC
Confidence 875
No 210
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.84 E-value=2.8e-20 Score=179.63 Aligned_cols=142 Identities=30% Similarity=0.454 Sum_probs=116.8
Q ss_pred CCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC--CccEEEECCccCCchhhhhhceEEcccccccccc
Q psy310 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG--TEGSITINGHERNLSQFRKLSCYIMQDNQLHANL 116 (240)
Q Consensus 39 ~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~--~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~l 116 (240)
.+++++|+++|++|++||+++|+|||||||||||++|+|...+. .+|+|.++|.+......++.++||+|++.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 44688999999999999999999999999999999999974432 3799999998876556778899999999999999
Q ss_pred cHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccC------CCCCchhhHHHHHHHHhcc
Q psy310 117 TVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLS------GPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 117 tv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 180 (240)
||+|++.+...++......+...++.++++++.+++.+..+..+. +.++++++++.++++++..
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~ 184 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcC
Confidence 999999987665544444555566678888888887765544433 5788999999999999875
No 211
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.8e-20 Score=160.69 Aligned_cols=146 Identities=17% Similarity=0.206 Sum_probs=107.6
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCCc-----hhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERNL-----SQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~~-----~~~~~~ 102 (240)
-.|+++.++++.+|+++||+|.+||+++|+|+|||||||||++|+|+.. + |++|+|.++|.+... ...++.
T Consensus 24 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 103 (268)
T PRK14248 24 VKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRRE 103 (268)
T ss_pred EEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhcc
Confidence 4678888888899999999999999999999999999999999999632 2 579999999987531 134567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++. ++.+++.+..... .........+.+..++..+++. +.........|+++++++.++++++
T Consensus 104 i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~ 180 (268)
T PRK14248 104 IGMVFQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLA 180 (268)
T ss_pred EEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 9999999987764 9999987643221 1111112233344455555442 3334455668889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 181 ~~ 182 (268)
T PRK14248 181 MK 182 (268)
T ss_pred CC
Confidence 75
No 212
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.84 E-value=6.3e-20 Score=164.74 Aligned_cols=147 Identities=24% Similarity=0.298 Sum_probs=109.7
Q ss_pred CCCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC--CccEEEECCccCCc---hh---h
Q psy310 32 NTNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG--TEGSITINGHERNL---SQ---F 99 (240)
Q Consensus 32 ~~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~--~~G~V~v~g~~~~~---~~---~ 99 (240)
-+|+.+.+. ...+|++|||+|++||+++|+|+||||||||+++|+|++.+. .+|+|.++|.++.. .. +
T Consensus 15 i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~ 94 (330)
T PRK09473 15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKL 94 (330)
T ss_pred EeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHH
Confidence 346666663 357999999999999999999999999999999999985432 38999999987632 11 2
Q ss_pred h-hhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh---hhhccCCCCCchhhHHHH
Q psy310 100 R-KLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA---QRCFLSGPWGTFESSVLL 173 (240)
Q Consensus 100 ~-~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 173 (240)
+ +.++||||++ .+.+.+++.+++........ ........+.+.++++.+++.+. ...+....|+++.|++.+
T Consensus 95 r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~I 172 (330)
T PRK09473 95 RAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMI 172 (330)
T ss_pred hcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHH
Confidence 2 4799999998 57788899888765433221 23334445566777887777542 234566788999999999
Q ss_pred HHHHhcc
Q psy310 174 ALAMYNR 180 (240)
Q Consensus 174 ~~~~~~~ 180 (240)
++++...
T Consensus 173 ArAL~~~ 179 (330)
T PRK09473 173 AMALLCR 179 (330)
T ss_pred HHHHHcC
Confidence 9999875
No 213
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.84 E-value=7.6e-20 Score=159.63 Aligned_cols=145 Identities=28% Similarity=0.310 Sum_probs=109.3
Q ss_pred CCceecCC---------CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------h
Q psy310 33 TNNNCEPN---------EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------S 97 (240)
Q Consensus 33 ~~~~~~~~---------~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~ 97 (240)
+|+.+.++ ++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... .
T Consensus 7 ~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~sG~i~~~g~~~~~~~~~~~~ 85 (268)
T PRK10419 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL-ESPSQGNVSWRGEPLAKLNRAQRK 85 (268)
T ss_pred eceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEeccccChhHHH
Confidence 46666665 47899999999999999999999999999999999997 56789999999986531 1
Q ss_pred hhhhhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHH
Q psy310 98 QFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLA 174 (240)
Q Consensus 98 ~~~~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 174 (240)
..++.++|++|++ .+.+..++.+++.+...... ..........+++++..+++. ..........++++++++.++
T Consensus 86 ~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~la 163 (268)
T PRK10419 86 AFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLA 163 (268)
T ss_pred HHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHH
Confidence 2456799999997 35567888888765322111 122233344567777777775 345556667888999999999
Q ss_pred HHHhcc
Q psy310 175 LAMYNR 180 (240)
Q Consensus 175 ~~~~~~ 180 (240)
+++...
T Consensus 164 ral~~~ 169 (268)
T PRK10419 164 RALAVE 169 (268)
T ss_pred HHHhcC
Confidence 999875
No 214
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5.2e-20 Score=165.30 Aligned_cols=148 Identities=20% Similarity=0.160 Sum_probs=107.8
Q ss_pred CCceecC----CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC---CCccEEEECCccCCc---hhh---
Q psy310 33 TNNNCEP----NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS---GTEGSITINGHERNL---SQF--- 99 (240)
Q Consensus 33 ~~~~~~~----~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~---~~~G~V~v~g~~~~~---~~~--- 99 (240)
.|+.+.| +...+|++|||+|.+||+++|+|+||||||||+++|+|++.+ +++|+|.++|.++.. ...
T Consensus 7 ~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 86 (330)
T PRK15093 7 RNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKL 86 (330)
T ss_pred eeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHH
Confidence 3555565 446799999999999999999999999999999999998542 478999999987531 111
Q ss_pred -hhhceEEccccc--ccccccHHHHHHHHHHHh-cCCC--ccHHHHHHHHHHhhhcCCcchh---hhhccCCCCCchhhH
Q psy310 100 -RKLSCYIMQDNQ--LHANLTVEEAMNVATALK-LGKD--LTKAARKDVVRTLFYRSDTNHA---QRCFLSGPWGTFESS 170 (240)
Q Consensus 100 -~~~~g~v~Q~~~--~~~~ltv~e~l~~~~~~~-~~~~--l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~ 170 (240)
++.++||||++. +.+.+++.+++....... .... .......+.+.++++.+++.+. ...+....|++++|+
T Consensus 87 ~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QR 166 (330)
T PRK15093 87 VGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQK 166 (330)
T ss_pred hCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 246999999986 567788888876432111 1000 0112234566778888888643 345666788999999
Q ss_pred HHHHHHHhcc
Q psy310 171 VLLALAMYNR 180 (240)
Q Consensus 171 ~~~~~~~~~~ 180 (240)
+.+++++...
T Consensus 167 v~iArAL~~~ 176 (330)
T PRK15093 167 VMIAIALANQ 176 (330)
T ss_pred HHHHHHHHCC
Confidence 9999999875
No 215
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.84 E-value=4.4e-20 Score=157.57 Aligned_cols=132 Identities=29% Similarity=0.382 Sum_probs=103.3
Q ss_pred eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 124 (240)
Q Consensus 45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~ 124 (240)
|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.... ....+|++|++.+++.+++.+++.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL-AQPTSGGVILEGKQITEP--GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEECCCC--ChhheEEecCcccCCCCCHHHHHHH
Confidence 5789999999999999999999999999999997 567899999999765321 1235899999998888999999876
Q ss_pred HHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 125 ATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
...... .........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus 78 ~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 132 (230)
T TIGR01184 78 AVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIR 132 (230)
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcC
Confidence 522111 1223333345567788888887766666777899999999999999875
No 216
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=8e-21 Score=162.05 Aligned_cols=141 Identities=23% Similarity=0.314 Sum_probs=100.5
Q ss_pred CCceecCCCc--eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 33 TNNNCEPNEK--TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~--~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
.|+.+.++++ ++|+++||+|.+||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+.. ....++.++|++
T Consensus 4 ~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (234)
T cd03251 4 KNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF-YDVDSGRILIDGHDVRDYTLASLRRQIGLVS 82 (234)
T ss_pred EEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-ccCCCCEEEECCEEhhhCCHHHHHhhEEEeC
Confidence 4566777665 799999999999999999999999999999999997 5678999999997642 223456799999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHH-----HHHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKD-----VVRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~-----~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.+++ .++.|++.+... ......... .+.++++.+ ++.+.........++++++++.++++++..
T Consensus 83 q~~~~~~-~tv~enl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 83 QDVFLFN-DTVAENIAYGRP-----GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred CCCeecc-ccHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 9998775 699998865311 011111111 122233322 233333334456788899999999999875
No 217
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.3e-20 Score=158.37 Aligned_cols=146 Identities=21% Similarity=0.257 Sum_probs=106.0
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CC---CccEEEECCccCC-----chhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SG---TEGSITINGHERN-----LSQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~---~~G~V~v~g~~~~-----~~~~~~~ 102 (240)
-+|+.+.++.+.+|+++||+|.+||+++|+|+|||||||||++|+|+.. .| .+|+|.++|.+.. ....++.
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 87 (252)
T PRK14255 8 SSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ 87 (252)
T ss_pred EEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCe
Confidence 3578888888899999999999999999999999999999999999743 13 4899999997652 1234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++ .++.+++.+..... . ........+.+...++.+++ .+.........++++++++.++++++
T Consensus 88 i~~~~q~~~~~~-~tv~~nl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~ 164 (252)
T PRK14255 88 VGMVFQQPNPFP-FSIYENVIYGLRLA-G-VKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA 164 (252)
T ss_pred EEEEECCCccCC-CcHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence 999999998877 69999987653221 1 01111122233444444443 23334455667889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 165 ~~ 166 (252)
T PRK14255 165 VK 166 (252)
T ss_pred cC
Confidence 75
No 218
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.4e-20 Score=158.81 Aligned_cols=145 Identities=21% Similarity=0.249 Sum_probs=107.6
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC------ccCC---chhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING------HERN---LSQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g------~~~~---~~~~~~~~ 103 (240)
.|+.+.++.+++|+++||+|.+||+++|+|+||||||||+++|+|+ .+|++|+|.++| .+.. ....+..+
T Consensus 14 ~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~-~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i 92 (257)
T PRK14246 14 SRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL-IEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV 92 (257)
T ss_pred eeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCcCceeEcCEEEECCcccccCCHHHHhcce
Confidence 5788889999999999999999999999999999999999999997 556776666554 4331 12345678
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++|++.+++.+++.+++.+..... ....+....+.+..+++.+++. +.........+.++++++.++++++.
T Consensus 93 ~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~ 170 (257)
T PRK14246 93 GMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL 170 (257)
T ss_pred EEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999888899999998753221 1112223334455666666653 22334455678889999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 171 ~ 171 (257)
T PRK14246 171 K 171 (257)
T ss_pred C
Confidence 5
No 219
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=4.2e-20 Score=153.60 Aligned_cols=92 Identities=40% Similarity=0.628 Sum_probs=78.3
Q ss_pred CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CCCccEEEECCccCCchhhhhhceEEc
Q psy310 33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SGTEGSITINGHERNLSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~~~G~V~v~g~~~~~~~~~~~~g~v~ 107 (240)
+|+.+.++. +++|+++||+|++||+++|+|||||||||||++|+|++. ++++|+|.++|.+.. ...++.++|++
T Consensus 7 ~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~ 85 (192)
T cd03232 7 KNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVE 85 (192)
T ss_pred eeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEec
Confidence 456666653 679999999999999999999999999999999999743 478999999998764 44567799999
Q ss_pred ccccccccccHHHHHHHH
Q psy310 108 QDNQLHANLTVEEAMNVA 125 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~ 125 (240)
|++.+++.+++.+++.+.
T Consensus 86 q~~~~~~~~tv~~~l~~~ 103 (192)
T cd03232 86 QQDVHSPNLTVREALRFS 103 (192)
T ss_pred ccCccccCCcHHHHHHHH
Confidence 999888889999998753
No 220
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=6.1e-21 Score=153.44 Aligned_cols=141 Identities=24% Similarity=0.332 Sum_probs=112.1
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
+-+++-+..++.++|+++||+|.+||+++|+||||||||||+|+++-+ .+|++|++.+.|.++. ...+|..++|+.
T Consensus 5 e~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L-isp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~ 83 (223)
T COG4619 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL-ISPTSGTLLFEGEDVSTLKPEAYRQQVSYCA 83 (223)
T ss_pred HHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc-cCCCCceEEEcCccccccChHHHHHHHHHHH
Confidence 346778888999999999999999999999999999999999999997 6789999999999864 467889999999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-hhccCCCCCchhhHHHHHHHHh
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-RCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
|.|.++.. ||++|+.|...++..+ . ....+..++.++++.+.. .......+++++|++.+++.+.
T Consensus 84 Q~paLfg~-tVeDNlifP~~~r~rr-~----dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq 149 (223)
T COG4619 84 QTPALFGD-TVEDNLIFPWQIRNRR-P----DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ 149 (223)
T ss_pred cCcccccc-chhhccccchHHhccC-C----ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh
Confidence 99998865 8999999876654322 1 233455577777766542 2233456788899988877664
No 221
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=3.8e-20 Score=155.11 Aligned_cols=122 Identities=29% Similarity=0.408 Sum_probs=95.9
Q ss_pred CCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC--CCccEEEECCccCCc--hhhhhhce
Q psy310 33 TNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS--GTEGSITINGHERNL--SQFRKLSC 104 (240)
Q Consensus 33 ~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--~~~G~V~v~g~~~~~--~~~~~~~g 104 (240)
+|+++.+. ++.+|+++||+|++||+++|+||||||||||+++|+|++.+ +++|+|.++|.+... ...++.++
T Consensus 7 ~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~ 86 (202)
T cd03233 7 RNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEII 86 (202)
T ss_pred EccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEE
Confidence 45666663 66899999999999999999999999999999999998543 789999999987532 23456789
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++|++.+++.+++.+++.+..... ........+.++++++.++++++..
T Consensus 87 ~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~~LS~Ge~qrl~laral~~~ 136 (202)
T cd03233 87 YVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVRGISGGERKRVSIAEALVSR 136 (202)
T ss_pred EEecccccCCCCcHHHHHhhhhhhc--------------------------cccchhhCCHHHHHHHHHHHHHhhC
Confidence 9999998888899999987542110 1123344678888999999998875
No 222
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4e-20 Score=161.01 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=106.2
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhh
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRK 101 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~ 101 (240)
.-.|+.+.++++++|+++||+|.+||+++|+|+||||||||+++|+|++.+ +++|+|.++|.++. ....++
T Consensus 12 ~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 91 (264)
T PRK14243 12 RTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRR 91 (264)
T ss_pred EEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhh
Confidence 357888888888999999999999999999999999999999999997432 37899999997652 223456
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHH
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
.++|++|++.+++ .++.+++.+..... .... ...+.+..++...++. +.........++++++++.+++++
T Consensus 92 ~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 92 RIGMVFQKPNPFP-KSIYDNIAYGARIN---GYKG-DMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred hEEEEccCCcccc-ccHHHHHHhhhhhc---Ccch-HHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 7999999988776 49999987643221 1111 1223334444444432 223344556788999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
...
T Consensus 167 ~~~ 169 (264)
T PRK14243 167 AVQ 169 (264)
T ss_pred hcC
Confidence 875
No 223
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.83 E-value=1e-20 Score=153.92 Aligned_cols=141 Identities=26% Similarity=0.378 Sum_probs=113.4
Q ss_pred CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEcccccc
Q psy310 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQL 112 (240)
Q Consensus 34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~~ 112 (240)
++...|+..+. ..+++|.+||+++|+|||||||||||++|+|+ ..|.+|+|.++|.+... .+..+-++++||+..+
T Consensus 6 ~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF-~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNL 82 (231)
T COG3840 6 DVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGF-ETPASGEILINGVDHTASPPAERPVSMLFQENNL 82 (231)
T ss_pred ceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhc-cCCCCceEEEcCeecCcCCcccCChhhhhhcccc
Confidence 45566666544 46788999999999999999999999999998 66889999999998743 3456778999999999
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.++||++|+.+... .+-.+.. ..++.++.+..++++.....+.+...+++++|++.+++.++..
T Consensus 83 FaHLtV~qNigLGl~--P~LkL~a-~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~ 147 (231)
T COG3840 83 FAHLTVAQNIGLGLS--PGLKLNA-EQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVRE 147 (231)
T ss_pred chhhhhhhhhcccCC--cccccCH-HHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhcc
Confidence 999999999876422 1112233 3355677788889999999999889999999999999888753
No 224
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.83 E-value=2.9e-20 Score=145.56 Aligned_cols=119 Identities=34% Similarity=0.465 Sum_probs=94.5
Q ss_pred eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcccccccccccHHHH
Q psy310 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEA 121 (240)
Q Consensus 45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q~~~~~~~ltv~e~ 121 (240)
|+++||+|++||+++|+|+||||||||+++|+|. .++.+|.|.+++.+... ...+..++|++|++.++..+++.++
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~-~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL-LPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTS-SHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999997 55789999999987654 4567889999999999999999887
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhcc----CCCCCchhhHHHHHHHHhcc
Q psy310 122 MNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFL----SGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 122 l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 180 (240)
. ....+..++..++..+.....+ ...+.++++++.+++++...
T Consensus 80 ~----------------~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~ 126 (137)
T PF00005_consen 80 E----------------SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKN 126 (137)
T ss_dssp H----------------HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTT
T ss_pred c----------------ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcC
Confidence 1 1222344444445444333333 66788899999999998765
No 225
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.83 E-value=1.4e-20 Score=160.94 Aligned_cols=141 Identities=19% Similarity=0.316 Sum_probs=99.5
Q ss_pred CCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 33 TNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
+|+.+.++ .+++|+++||+|.+||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|++
T Consensus 4 ~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (237)
T cd03252 4 EHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF-YVPENGRVLVDGHDLALADPAWLRRQVGVVL 82 (237)
T ss_pred EEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cCCCCCEEEECCeehHhcCHHHHhhcEEEEc
Confidence 45667765 36799999999999999999999999999999999997 5678999999997652 123456799999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHH-----HHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV-----VRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.++. .|+.+++.+... .......... +..++..+ ++...........|++++|++.++++++..
T Consensus 83 q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 83 QENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred CCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 9987764 699998865211 1111111111 11222222 223333344556788999999999999874
No 226
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=3.7e-20 Score=151.41 Aligned_cols=90 Identities=30% Similarity=0.505 Sum_probs=77.5
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~ 110 (240)
+|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+... ...++.++|++|++
T Consensus 4 ~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (173)
T cd03230 4 RNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL-LKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEP 82 (173)
T ss_pred EEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECCEEcccchHhhhccEEEEecCC
Confidence 4677777777899999999999999999999999999999999997 56789999999976532 23456799999999
Q ss_pred cccccccHHHHHH
Q psy310 111 QLHANLTVEEAMN 123 (240)
Q Consensus 111 ~~~~~ltv~e~l~ 123 (240)
.+++.+++.+++.
T Consensus 83 ~~~~~~tv~~~~~ 95 (173)
T cd03230 83 SLYENLTVRENLK 95 (173)
T ss_pred ccccCCcHHHHhh
Confidence 8888889988764
No 227
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.5e-20 Score=157.56 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=106.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC-----ccEEEECCccCCc-----hhhhhh
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-----EGSITINGHERNL-----SQFRKL 102 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~-----~G~V~v~g~~~~~-----~~~~~~ 102 (240)
+|+.+.++++.+|+++||+|.+||+++|+||||||||||+++|+|++. |. +|+|.++|.+... ...++.
T Consensus 8 ~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~ 86 (251)
T PRK14249 8 RGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIYSPNLDVVNLRKR 86 (251)
T ss_pred EEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEccccccChHHhhce
Confidence 577888888889999999999999999999999999999999999844 44 6999999976531 234677
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.+++. ++.+++.+..... .. .......+.+..++..+++. +.........++++++++.++++++
T Consensus 87 i~~v~q~~~~~~~-tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 163 (251)
T PRK14249 87 VGMVFQQPNPFPK-SIFDNVAFGPRML-GT-TAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA 163 (251)
T ss_pred EEEEecCCccCcC-cHHHHHhhHHHhc-CC-ChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 9999999988764 9999988654321 11 11112233344455544432 2334455667889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 164 ~~ 165 (251)
T PRK14249 164 IE 165 (251)
T ss_pred cC
Confidence 65
No 228
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=7.1e-20 Score=159.28 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=106.2
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~~ 103 (240)
++..+.++.+++|+++||+|++||+++|+|+||||||||+++|+|++.+ +.+|+|.++|.+... ...++.+
T Consensus 12 ~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 91 (261)
T PRK14263 12 KLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYI 91 (261)
T ss_pred EeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhce
Confidence 3456777888999999999999999999999999999999999998553 379999999987531 2345679
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHhc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++|++.++ .+++.+++.+...... .. ....+.+..+++..++.+ .........+.++++++.+++++..
T Consensus 92 ~~v~q~~~~~-~~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~ 166 (261)
T PRK14263 92 GMVFQQPNPF-SMSIFDNVAFGLRLNR---YK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT 166 (261)
T ss_pred EEEecCCccc-cccHHHHHHHHHhhcC---ch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 9999999877 5899999976543221 11 122334555666666532 1223344578889999999999986
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 167 ~ 167 (261)
T PRK14263 167 E 167 (261)
T ss_pred C
Confidence 4
No 229
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.5e-20 Score=159.93 Aligned_cols=141 Identities=24% Similarity=0.343 Sum_probs=99.2
Q ss_pred CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310 33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q 108 (240)
+|+.+.+++ +++|+++||+|.+||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+.. ....++.++|++|
T Consensus 6 ~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 84 (229)
T cd03254 6 ENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF-YDPQKGQILIDGIDIRDISRKSLRSMIGVVLQ 84 (229)
T ss_pred EEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cCCCCCEEEECCEeHHHcCHHHHhhhEEEecC
Confidence 467777764 5799999999999999999999999999999999997 5678999999997642 2234567999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHH-----HHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDV-----VRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.++.. ++.+++.+... ........+. +..+++.+ ++...........++++++++.++++++..
T Consensus 85 ~~~~~~~-tv~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 85 DTFLFSG-TIMENIRLGRP-----NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred Cchhhhh-HHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 9987764 88888764311 1111111111 11122221 222222333456788899999999999875
No 230
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.2e-20 Score=161.54 Aligned_cols=147 Identities=22% Similarity=0.316 Sum_probs=105.6
Q ss_pred CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310 33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~ 111 (240)
.|+.+.++ ++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+......+..++|++|++.
T Consensus 10 ~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~ 88 (272)
T PRK15056 10 NDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF-VRLASGKISILGQPTRQALQKNLVAYVPQSEE 88 (272)
T ss_pred EeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEhHHhhccceEEEeccccc
Confidence 56778874 57899999999999999999999999999999999997 56789999999977532212245899999976
Q ss_pred ccc--cccHHHHHHHHHHHhcC-CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHA--NLTVEEAMNVATALKLG-KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~--~ltv~e~l~~~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.. ..++++++.+....... .........+.+..+++.+++.+.........|+++++++.+++++...
T Consensus 89 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~ 160 (272)
T PRK15056 89 VDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQ 160 (272)
T ss_pred cccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 422 23566665432110000 0011122234456677777877666666677889999999999999875
No 231
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.83 E-value=1.1e-19 Score=156.93 Aligned_cols=145 Identities=18% Similarity=0.192 Sum_probs=106.9
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc-----CCc---hh----hh
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-----RNL---SQ----FR 100 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~-----~~~---~~----~~ 100 (240)
+|+++.++++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+ ... .. .+
T Consensus 7 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 85 (253)
T TIGR02323 7 SGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR-LAPDHGTATYIMRSGAELELYQLSEAERRRLMR 85 (253)
T ss_pred eeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEEecccccccccccCCHHHHHHhhh
Confidence 5788888888899999999999999999999999999999999997 56789999999865 321 11 12
Q ss_pred hhceEEccccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHH
Q psy310 101 KLSCYIMQDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 101 ~~~g~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
+.++|++|++. +....++.+++...... ... .........+.++++.+++.+ .........|+++++++.+++++
T Consensus 86 ~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~-~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral 163 (253)
T TIGR02323 86 TEWGFVHQNPRDGLRMRVSAGANIGERLMA-IGA-RHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNL 163 (253)
T ss_pred cceEEEEeCcccccCccccHHHHHHHHHHH-hcc-cchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHH
Confidence 46899999975 33456777776543211 110 011123345667788887753 45556667889999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
+..
T Consensus 164 ~~~ 166 (253)
T TIGR02323 164 VTR 166 (253)
T ss_pred hcC
Confidence 875
No 232
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.3e-19 Score=156.29 Aligned_cols=145 Identities=20% Similarity=0.241 Sum_probs=107.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCCc-----hhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERNL-----SQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~~-----~~~~~~~ 103 (240)
+|+.+.++++++|+++||+|.+||+++|+|+|||||||||++|+|+.. + +++|+|.++|.++.. ...++.+
T Consensus 7 ~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i 86 (250)
T PRK14266 7 ENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKV 86 (250)
T ss_pred EeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhhe
Confidence 578888888899999999999999999999999999999999999743 2 378999999987531 2345679
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++|++.++.. ++.+++.+..... . .......++.+..+++.+++. +.........++++++++.+++++..
T Consensus 87 ~~~~q~~~~~~~-t~~~nl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 163 (250)
T PRK14266 87 GMVFQKPNPFPK-SIFDNVAYGLRIH-G-EDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV 163 (250)
T ss_pred EEEecCCccCcc-hHHHHHHhHHhhc-C-CCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 999999987764 9999887643211 1 112222344555566665542 22233445577889999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 164 ~ 164 (250)
T PRK14266 164 S 164 (250)
T ss_pred C
Confidence 5
No 233
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=3.4e-20 Score=152.29 Aligned_cols=91 Identities=37% Similarity=0.573 Sum_probs=77.7
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-----chhhhhhceEEc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-----LSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-----~~~~~~~~g~v~ 107 (240)
+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .++++|+|.++|.+.. ....++.++|++
T Consensus 4 ~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~ 82 (178)
T cd03229 4 KNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL-EEPDSGSILIDGEDLTDLEDELPPLRRRIGMVF 82 (178)
T ss_pred EEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEccccchhHHHHhhcEEEEe
Confidence 4567777788899999999999999999999999999999999997 5678999999997653 123457799999
Q ss_pred ccccccccccHHHHHHH
Q psy310 108 QDNQLHANLTVEEAMNV 124 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~ 124 (240)
|++.++...++.+++.+
T Consensus 83 q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 83 QDFALFPHLTVLENIAL 99 (178)
T ss_pred cCCccCCCCCHHHheee
Confidence 99988888899887653
No 234
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.83 E-value=1.8e-20 Score=159.25 Aligned_cols=144 Identities=22% Similarity=0.252 Sum_probs=103.3
Q ss_pred CCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310 32 NTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 32 ~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
-.|+.+.+++ .++|+++||+|.+||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+.. ....++.++|
T Consensus 14 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 92 (226)
T cd03248 14 FQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF-YQPQGGQVLLDGKPISQYEHKYLHSKVSL 92 (226)
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cCCCCcEEEECCCchHHcCHHHHHhhEEE
Confidence 3566777764 4699999999999999999999999999999999997 5678999999997642 1234567999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccH---HHHHHHHHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTK---AARKDVVRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~---~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++.+++ .++.+++.+... . ..... ......+..++..+ ++.+.........++++++++.+++++...
T Consensus 93 ~~q~~~l~~-~tv~~nl~~~~~--~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 93 VGQEPVLFA-RSLQDNIAYGLQ--S-CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred EecccHHHh-hhHHHHhccccC--C-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999998765 589888865321 0 01010 00111233445554 444444445566788999999999999875
No 235
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1e-19 Score=159.32 Aligned_cols=144 Identities=17% Similarity=0.169 Sum_probs=105.4
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~ 102 (240)
-.|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|++.+ +.+|+|.++|.+... ...++.
T Consensus 23 ~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~ 102 (274)
T PRK14265 23 VEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQ 102 (274)
T ss_pred EeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhc
Confidence 46889999888999999999999999999999999999999999997542 258999999976521 234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHHh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++|++|++.++. .++.+++.+..... .... ...+.+..+++.+++ .+.........++++++++.+++++.
T Consensus 103 i~~v~q~~~l~~-~tv~~nl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 103 VGMVFQRPNPFP-KSIYENIAFAPRAN---GYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred EEEEccCCcccc-ccHHHHHHhHHHhc---CchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 999999988776 49999887643221 1111 112233444444443 22333445567889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 178 ~~ 179 (274)
T PRK14265 178 MK 179 (274)
T ss_pred hC
Confidence 65
No 236
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.83 E-value=1.5e-19 Score=156.36 Aligned_cols=141 Identities=19% Similarity=0.252 Sum_probs=104.3
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC----CccEEEECCccCCchhh-hhhceEEc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITINGHERNLSQF-RKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~----~~G~V~v~g~~~~~~~~-~~~~g~v~ 107 (240)
+|+.+.+ ++++|+++||+|.+||+++|+|+||||||||+++|+|+ .+| ++|+|.++|.++..... ++.++|++
T Consensus 8 ~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~ 85 (254)
T PRK10418 8 RNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI-LPAGVRQTAGRVLLDGKPVAPCALRGRKIATIM 85 (254)
T ss_pred eCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCcCCEEEECCeeccccccccceEEEEe
Confidence 5777777 67899999999999999999999999999999999997 445 89999999987642222 35699999
Q ss_pred cccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh---hhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA---QRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++. +.+..++.+++...... .. .... .+.+.++++.+++.+. ........|+++++++.++++++..
T Consensus 86 q~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~--~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~ 158 (254)
T PRK10418 86 QNPRSAFNPLHTMHTHARETCLA-LG--KPAD--DATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCE 158 (254)
T ss_pred cCCccccCccccHHHHHHHHHHH-cC--CChH--HHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcC
Confidence 9974 44556777766542211 11 1111 2445667777777652 3445566788999999999999875
No 237
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.3e-19 Score=175.03 Aligned_cols=146 Identities=23% Similarity=0.198 Sum_probs=113.9
Q ss_pred CCCceecCC-----------CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----
Q psy310 32 NTNNNCEPN-----------EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---- 96 (240)
Q Consensus 32 ~~~~~~~~~-----------~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---- 96 (240)
-+|+.+.|+ .+.+|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++..
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl-~~p~~G~I~~~g~~i~~~~~~ 394 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL-VESQGGEIIFNGQRIDTLSPG 394 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC-CCCCCcEEEECCEECCcCCHH
Confidence 457777775 25799999999999999999999999999999999997 56789999999976531
Q ss_pred --hhhhhhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHH
Q psy310 97 --SQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSV 171 (240)
Q Consensus 97 --~~~~~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 171 (240)
...++.++||+|++ .+.+.+++.+++.+..... .........+.+.++++.+++. ......+...|++++|++
T Consensus 395 ~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv 472 (623)
T PRK10261 395 KLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI 472 (623)
T ss_pred HHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH
Confidence 12345799999997 4778899999987653221 1112233445677788888885 456667788999999999
Q ss_pred HHHHHHhcc
Q psy310 172 LLALAMYNR 180 (240)
Q Consensus 172 ~~~~~~~~~ 180 (240)
.+++++...
T Consensus 473 ~iAraL~~~ 481 (623)
T PRK10261 473 CIARALALN 481 (623)
T ss_pred HHHHHHhcC
Confidence 999999865
No 238
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.5e-19 Score=160.59 Aligned_cols=148 Identities=20% Similarity=0.247 Sum_probs=109.3
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKL 102 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~ 102 (240)
-.|+++.++++++|+++||+|.+||+++|+|+|||||||||++|+|++.+ |.+|+|.++|.++. ....++.
T Consensus 48 i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~ 127 (305)
T PRK14264 48 VEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKR 127 (305)
T ss_pred EEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhc
Confidence 46889999889999999999999999999999999999999999998542 57999999997653 1234567
Q ss_pred ceEEcccccccccccHHHHHHHHHHHhcCC---------Ccc-HHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchh
Q psy310 103 SCYIMQDNQLHANLTVEEAMNVATALKLGK---------DLT-KAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFE 168 (240)
Q Consensus 103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~---------~l~-~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~ 168 (240)
++|++|++.+++ .++.+++.+........ ... .....+.+..+++.+++. +.........+++++
T Consensus 128 i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 206 (305)
T PRK14264 128 VGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQ 206 (305)
T ss_pred eEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHH
Confidence 999999988776 59999988653221000 011 112234455666666553 233344556788999
Q ss_pred hHHHHHHHHhcc
Q psy310 169 SSVLLALAMYNR 180 (240)
Q Consensus 169 ~~~~~~~~~~~~ 180 (240)
+++.+++++...
T Consensus 207 qrv~LAraL~~~ 218 (305)
T PRK14264 207 QRLCIARCLAVD 218 (305)
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 239
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=5e-20 Score=147.56 Aligned_cols=145 Identities=24% Similarity=0.293 Sum_probs=124.0
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---------hhhhhhc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---------SQFRKLS 103 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---------~~~~~~~ 103 (240)
+++.|-||...+|.||+|+-+.||.+.|+||||+|||||+|.|.=+ .-|.+|++.+.+....+ ..+|+.+
T Consensus 6 ~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnll-e~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~v 84 (242)
T COG4161 6 NGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLL-EMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNV 84 (242)
T ss_pred cccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHH-hCCCCCeEEecccccccccCccHHHHHHHHHhh
Confidence 5788999999999999999999999999999999999999999865 77889999998865432 3578899
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|+|||...+++.+||.|++-.+.... .++.+......+.++++++.+....++++...+++..|++.++++++..
T Consensus 85 gmvfqqy~lwphltv~enlieap~kv--~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmk 159 (242)
T COG4161 85 GMVFQQYNLWPHLTVQENLIEAPCRV--LGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred hhhhhhhccCchhHHHHHHHhhhHHH--hCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcC
Confidence 99999999999999999987554322 2345566677788899999999999999888999999999999998765
No 240
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=7e-21 Score=156.62 Aligned_cols=143 Identities=24% Similarity=0.341 Sum_probs=120.3
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ 108 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q 108 (240)
-.|+.+.++.+.+++++|++|++|.++++||||||||||||.+++.+ .+.++|+|.++|.++. ...+++.++++-|
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL-~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ 82 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL-LKKDSGEITIDGLELTSTPSKELAKKLSILKQ 82 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHh-ccccCceEEEeeeecccCChHHHHHHHHHHHh
Confidence 35889999999999999999999999999999999999999999997 6688999999998864 3457788899999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHH
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALA 176 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (240)
+..+...+||++.+.|.........+. .+.+..+.+.++-+.+.....+++...+++++|+..+|.-
T Consensus 83 ~N~i~~rlTV~dLv~FGRfPYSqGRlt-~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMV 149 (252)
T COG4604 83 ENHINSRLTVRDLVGFGRFPYSQGRLT-KEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMV 149 (252)
T ss_pred hchhhheeEHHHHhhcCCCcccCCCCc-hHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhhee
Confidence 999999999999998875433222333 3446677778888889999999999999998888777653
No 241
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=9.5e-20 Score=172.09 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=111.6
Q ss_pred CCCceecC---CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhce
Q psy310 32 NTNNNCEP---NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSC 104 (240)
Q Consensus 32 ~~~~~~~~---~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g 104 (240)
-+|+.+.+ +++++|+++||+|++||+++|+|+||||||||+++|+|++.+|++|+|.++|.++.. ...+..++
T Consensus 262 ~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 341 (506)
T PRK13549 262 VRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIA 341 (506)
T ss_pred EecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCE
Confidence 45677777 356799999999999999999999999999999999998543589999999976531 12245689
Q ss_pred EEcccc---cccccccHHHHHHHHHHHhcCC--CccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHh
Q psy310 105 YIMQDN---QLHANLTVEEAMNVATALKLGK--DLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 105 ~v~Q~~---~~~~~ltv~e~l~~~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
|++|++ .+++.+++.+++.+........ .......++.+..+++.+++. +.....+...|++++|++.+++++.
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~ 421 (506)
T PRK13549 342 MVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLL 421 (506)
T ss_pred EeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHh
Confidence 999996 3667889999987643111110 012223345577788888875 4556667778999999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 422 ~~ 423 (506)
T PRK13549 422 LN 423 (506)
T ss_pred hC
Confidence 64
No 242
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=8.9e-20 Score=171.96 Aligned_cols=149 Identities=20% Similarity=0.274 Sum_probs=111.6
Q ss_pred CCCceecC---CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhce
Q psy310 32 NTNNNCEP---NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSC 104 (240)
Q Consensus 32 ~~~~~~~~---~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g 104 (240)
-+|+.+.+ +++.+|+++||+|.+||+++|+|||||||||||++|+|++.++.+|+|.++|.+... ...++.++
T Consensus 260 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~ 339 (500)
T TIGR02633 260 ARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIA 339 (500)
T ss_pred EeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCE
Confidence 45677777 356799999999999999999999999999999999998544579999999976531 22356789
Q ss_pred EEcccc---cccccccHHHHHHHHHHHhcC--CCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHh
Q psy310 105 YIMQDN---QLHANLTVEEAMNVATALKLG--KDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 105 ~v~Q~~---~~~~~ltv~e~l~~~~~~~~~--~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
|++|++ .+++.+++.+++.+....... ........++.++++++.+++.+ .....+...|++++|++.+++++.
T Consensus 340 ~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~ 419 (500)
T TIGR02633 340 MVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLL 419 (500)
T ss_pred EcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHh
Confidence 999996 477889999988764311111 01122223455677888888753 355566778999999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 420 ~~ 421 (500)
T TIGR02633 420 TN 421 (500)
T ss_pred hC
Confidence 65
No 243
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.2e-19 Score=156.03 Aligned_cols=145 Identities=23% Similarity=0.276 Sum_probs=107.3
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC-----CccEEEECCccCC-----chhhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG-----TEGSITINGHERN-----LSQFRK 101 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~-----~~G~V~v~g~~~~-----~~~~~~ 101 (240)
-+|+.+.+++..+|+++||+|++||+++|+|+|||||||||++|+|++. + .+|+|.++|.+.. ....++
T Consensus 10 ~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~ 88 (261)
T PRK14258 10 VNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERRVNLNRLRR 88 (261)
T ss_pred EeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhhccccchHHhhc
Confidence 3578888888889999999999999999999999999999999999854 4 3799999997642 123456
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHH
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
.++|++|++.+++ .++.|++.+..... . ........+.+..+++.+++. +.........++++++++.+++++
T Consensus 89 ~i~~~~q~~~l~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 165 (261)
T PRK14258 89 QVSMVHPKPNLFP-MSVYDNVAYGVKIV-G-WRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165 (261)
T ss_pred cEEEEecCCccCc-ccHHHHHHHHHHhc-C-CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 7999999988877 89999987643221 1 012222233455566666543 233444556788999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
...
T Consensus 166 ~~~ 168 (261)
T PRK14258 166 AVK 168 (261)
T ss_pred hcC
Confidence 865
No 244
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.82 E-value=8.3e-20 Score=152.11 Aligned_cols=93 Identities=51% Similarity=0.746 Sum_probs=78.8
Q ss_pred CCceecCCC------ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CCCccEEEECCccCCchhhhhhceE
Q psy310 33 TNNNCEPNE------KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SGTEGSITINGHERNLSQFRKLSCY 105 (240)
Q Consensus 33 ~~~~~~~~~------~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~~~G~V~v~g~~~~~~~~~~~~g~ 105 (240)
+|+.+.++. +++|+++||+|++||+++|+||||||||||+++|+|+++ +|.+|+|.++|.+......++.++|
T Consensus 7 ~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~ 86 (194)
T cd03213 7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGY 86 (194)
T ss_pred EeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEE
Confidence 456666654 679999999999999999999999999999999999741 6789999999987653345677999
Q ss_pred EcccccccccccHHHHHHHH
Q psy310 106 IMQDNQLHANLTVEEAMNVA 125 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~ 125 (240)
++|++.+++.+++.+++.+.
T Consensus 87 ~~q~~~~~~~~t~~~~i~~~ 106 (194)
T cd03213 87 VPQDDILHPTLTVRETLMFA 106 (194)
T ss_pred ccCcccCCCCCcHHHHHHHH
Confidence 99999888889999988653
No 245
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.82 E-value=9.7e-20 Score=191.64 Aligned_cols=146 Identities=19% Similarity=0.183 Sum_probs=120.8
Q ss_pred cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC--chhhhhhceEE
Q psy310 31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--LSQFRKLSCYI 106 (240)
Q Consensus 31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~--~~~~~~~~g~v 106 (240)
.-+|+.+.+++ +.+|+++||+|++||++||+||||||||||+|+|+|+ ..|++|+|.++|.+.. ....++.+||+
T Consensus 1939 ~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl-l~ptsG~I~i~G~~i~~~~~~~r~~IGy~ 2017 (2272)
T TIGR01257 1939 RLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD-TTVTSGDATVAGKSILTNISDVHQNMGYC 2017 (2272)
T ss_pred EEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC-CCCCccEEEECCEECcchHHHHhhhEEEE
Confidence 34688888886 6899999999999999999999999999999999997 5688999999998763 22345679999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++.+++.+|++|++.+...++ +......++.++++++.+++.+..+......++++++++.+++++...
T Consensus 2018 pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2018 PQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred eccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999999999998654332 223334455677788888988877777788999999999999999875
No 246
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.82 E-value=1.7e-19 Score=153.77 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=100.0
Q ss_pred eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC----CccEEEECCccCCchhh-hhhceEEccccc--ccccc
Q psy310 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITINGHERNLSQF-RKLSCYIMQDNQ--LHANL 116 (240)
Q Consensus 44 ~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~----~~G~V~v~g~~~~~~~~-~~~~g~v~Q~~~--~~~~l 116 (240)
+|+++||+|++||+++|+||||||||||+++|+|++ +| ++|+|.++|.+...... ++.++|++|++. +.+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL-PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 578999999999999999999999999999999984 45 89999999987532222 357899999985 55668
Q ss_pred cHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc---hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 117 TVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN---HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 117 tv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+..... . . ......+.+.++++.+++. +.........++++++++.++++++..
T Consensus 80 t~~~~~~~~~~~~-~-~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 143 (230)
T TIGR02770 80 TMGNHAIETLRSL-G-K-LSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLE 143 (230)
T ss_pred CHHHHHHHHHHHc-C-c-cHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcC
Confidence 8988876543221 1 1 1122344566777877776 334555566888999999999999875
No 247
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.82 E-value=1.1e-19 Score=191.13 Aligned_cols=145 Identities=21% Similarity=0.247 Sum_probs=120.0
Q ss_pred CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEc
Q psy310 32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~ 107 (240)
-+|+.+.++ ++.+|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++.. ...++.+||++
T Consensus 931 I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL-l~PtsG~I~i~G~dI~~~~~~~r~~IG~~p 1009 (2272)
T TIGR01257 931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL-LPPTSGTVLVGGKDIETNLDAVRQSLGMCP 1009 (2272)
T ss_pred EEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcC-CCCCceEEEECCEECcchHHHHhhcEEEEe
Confidence 457778884 57899999999999999999999999999999999997 56889999999987632 23467799999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.+++.+|++|++.+...+. +......++.++++++.+++.+.........+++++|++.+++++...
T Consensus 1010 Q~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~ 1079 (2272)
T TIGR01257 1010 QHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079 (2272)
T ss_pred cCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999999999998754332 223333455677788888988887777888999999999999999875
No 248
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.82 E-value=2e-19 Score=153.06 Aligned_cols=135 Identities=23% Similarity=0.274 Sum_probs=102.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
.|..++++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|++... ..+...+
T Consensus 26 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~~---------~~~~~~~ 95 (224)
T cd03220 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI-YPPDSGTVTVRGRVSSL---------LGLGGGF 95 (224)
T ss_pred hhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEchh---------hcccccC
Confidence 4667899999999999999999999999999999999999999997 56889999999976421 1112234
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+.+|+.+++.+..... ........+.+..+++.+++.+.....+...++++++++.+++++...
T Consensus 96 ~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 96 NPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALE 160 (224)
T ss_pred CCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 45689999987653321 112233344556677777776666666677889999999999999875
No 249
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.82 E-value=3.5e-20 Score=158.60 Aligned_cols=141 Identities=21% Similarity=0.257 Sum_probs=96.9
Q ss_pred CCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 33 TNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 33 ~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
.|+.+.+++ +++|+++||+|++||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|+
T Consensus 4 ~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (238)
T cd03249 4 KNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF-YDPTSGEILLDGVDIRDLNLRWLRSQIGLV 82 (238)
T ss_pred EEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc-CCCCCCEEEECCEehhhcCHHHHHhhEEEE
Confidence 355666643 5699999999999999999999999999999999997 5678999999997642 22334679999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHH-----HHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV-----VRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++.+++ .++.+++.+.... . ........ +..++..+ ++...........++++++++.++++++.
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~----~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 83 SQEPVLFD-GTIAENIRYGKPD----A-TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred CCchhhhh-hhHHHHhhccCCC----C-CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc
Confidence 99988775 6898888653110 0 11111111 11111111 12222233345678889999999999986
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 157 ~ 157 (238)
T cd03249 157 N 157 (238)
T ss_pred C
Confidence 4
No 250
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.82 E-value=2.8e-19 Score=154.23 Aligned_cols=150 Identities=20% Similarity=0.173 Sum_probs=108.7
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEEEECCccCCc---hhhhh-hceE
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSITINGHERNL---SQFRK-LSCY 105 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V~v~g~~~~~---~~~~~-~~g~ 105 (240)
.-.|+.+.++++.+|+++||+|++||+++|+|+||||||||+++|+|+. .+|++|+|.++|.++.. ...++ .++|
T Consensus 9 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 88 (252)
T CHL00131 9 EIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFL 88 (252)
T ss_pred EEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEE
Confidence 3467888888888999999999999999999999999999999999962 35789999999976532 11122 3678
Q ss_pred EcccccccccccHHHHHHHHHHHhcC----CCccHHHHHHHHHHhhhcCCcch-hhhhccC-CCCCchhhHHHHHHHHhc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLG----KDLTKAARKDVVRTLFYRSDTNH-AQRCFLS-GPWGTFESSVLLALAMYN 179 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~----~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~ 179 (240)
++|++.+++.+++.+++.+....... ...........+.+++..+++.+ .....+. ..|+++++++.++++++.
T Consensus 89 ~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 168 (252)
T CHL00131 89 AFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALL 168 (252)
T ss_pred EeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHc
Confidence 99999888888998887654221100 00111122344566777777753 3344444 478899999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 169 ~ 169 (252)
T CHL00131 169 D 169 (252)
T ss_pred C
Confidence 5
No 251
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.82 E-value=4.3e-20 Score=175.13 Aligned_cols=139 Identities=27% Similarity=0.309 Sum_probs=102.4
Q ss_pred cCCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC--chhhhhhceEEc
Q psy310 31 TNTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--LSQFRKLSCYIM 107 (240)
Q Consensus 31 ~~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~--~~~~~~~~g~v~ 107 (240)
.-+|++..|++ +++|+|+||+|++||+++|+||||||||||+++|.|++ +|.+|+|.++|.+.. ...+++.++||+
T Consensus 336 ~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~i~g~~i~~~~~~lr~~i~~V~ 414 (529)
T TIGR02868 336 ELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-DPLQGEVTLDGVSVSSLQDELRRRISVFA 414 (529)
T ss_pred EEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhHHHHHHhheEEEc
Confidence 34678888865 56999999999999999999999999999999999984 578999999997653 455678999999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-------hhc----cCCCCCchhhHHHHHHH
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-------RCF----LSGPWGTFESSVLLALA 176 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~ 176 (240)
|++.++. .|++||+.+.. +..++++..+.++ ..++.+.. +.. -...|++++||+.+|++
T Consensus 415 Q~~~lF~-~TI~eNI~~g~-----~~~~~e~i~~al~----~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARa 484 (529)
T TIGR02868 415 QDAHLFD-TTVRDNLRLGR-----PDATDEELWAALE----RVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARA 484 (529)
T ss_pred cCccccc-ccHHHHHhccC-----CCCCHHHHHHHHH----HcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHH
Confidence 9998875 49999998631 1223333233222 22222111 111 12367889999999999
Q ss_pred Hhcc
Q psy310 177 MYNR 180 (240)
Q Consensus 177 ~~~~ 180 (240)
+.+.
T Consensus 485 ll~~ 488 (529)
T TIGR02868 485 LLAD 488 (529)
T ss_pred HhcC
Confidence 9875
No 252
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.82 E-value=5.2e-20 Score=155.62 Aligned_cols=165 Identities=24% Similarity=0.268 Sum_probs=112.1
Q ss_pred CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
.|+.+.+++ +.+|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ....++.++|++
T Consensus 6 ~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 84 (220)
T cd03245 6 RNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL-YKPTSGSVLLDGTDIRQLDPADLRRNIGYVP 84 (220)
T ss_pred EEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cCCCCCeEEECCEEhHHCCHHHHHhhEEEeC
Confidence 456666654 5799999999999999999999999999999999997 5678999999997642 123456789999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhc-----------cCCCCCchhhHHHHHHH
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCF-----------LSGPWGTFESSVLLALA 176 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 176 (240)
|++.++. .++.|++.+.. . .... ..+.+++..+++.+..... ....|+++++++.++++
T Consensus 85 q~~~~~~-~tv~e~l~~~~--~---~~~~----~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 85 QDVTLFY-GTLRDNITLGA--P---LADD----ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred CCCcccc-chHHHHhhcCC--C---CCCH----HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 9998776 68888875421 1 1111 1223344444544433322 24678889999999999
Q ss_pred HhcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 177 ~~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
+.... +-.+++...-.+... .+-.+.++|..+
T Consensus 155 l~~~p-~llllDEPt~~LD~~-----------~~~~l~~~l~~~ 186 (220)
T cd03245 155 LLNDP-PILLLDEPTSAMDMN-----------SEERLKERLRQL 186 (220)
T ss_pred HhcCC-CEEEEeCccccCCHH-----------HHHHHHHHHHHh
Confidence 98752 233444444333222 345556666554
No 253
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.82 E-value=1.5e-19 Score=187.29 Aligned_cols=147 Identities=27% Similarity=0.396 Sum_probs=118.2
Q ss_pred CCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC--CCccEEEECCccCCchhhhhhceEE
Q psy310 33 TNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS--GTEGSITINGHERNLSQFRKLSCYI 106 (240)
Q Consensus 33 ~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--~~~G~V~v~g~~~~~~~~~~~~g~v 106 (240)
+|+.+.++ .+.+|++||++|++||+++|+|||||||||||++|+|+..+ +.+|+|.++|.+.. ..+++.++||
T Consensus 763 ~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv 841 (1394)
T TIGR00956 763 RNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYV 841 (1394)
T ss_pred EeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhcceeee
Confidence 55666653 56899999999999999999999999999999999997432 57899999998764 3467789999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccC----CCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLS----GPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++.+++.+|++|++.+...++......+....+.++++++.+++.+..+..+. +.++++++++.+++++...
T Consensus 842 ~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~ 919 (1394)
T TIGR00956 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAK 919 (1394)
T ss_pred cccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcC
Confidence 9999888999999999987655433333444555677888888888776655554 5788999999999999875
No 254
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.8e-20 Score=157.58 Aligned_cols=148 Identities=24% Similarity=0.278 Sum_probs=115.3
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---Cc-hhhhhhceEEc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NL-SQFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~-~~~~~~~g~v~ 107 (240)
-+|+.+.++++++|+++||+|++||.++|+|||||||||||++|+|. .+|.+|.+.+.|+.. .. .++++.+|+|.
T Consensus 34 l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~-~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS 112 (257)
T COG1119 34 LKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE-HPPSSGDVTLLGRRFGKGETIFELRKRIGLVS 112 (257)
T ss_pred ecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcc-cCCCCCceeeeeeeccCCcchHHHHHHhCccC
Confidence 47899999999999999999999999999999999999999999996 667799999988754 22 67889999996
Q ss_pred cc--ccccccccHHHHHHHHHH--HhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QD--NQLHANLTVEEAMNVATA--LKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~--~~~~~~ltv~e~l~~~~~--~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
-. ..+....+++|.+..+.. .........+.....+..+++.+++.+...+.....|.+++++++++++++..
T Consensus 113 ~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~ 189 (257)
T COG1119 113 SELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKD 189 (257)
T ss_pred HHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcC
Confidence 53 223344455555442221 11111112344567788899999999998888888999999999999999876
No 255
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.82 E-value=2.4e-19 Score=169.82 Aligned_cols=144 Identities=21% Similarity=0.222 Sum_probs=109.4
Q ss_pred CCCceecCC-----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEEC-Ccc---CC-c-----
Q psy310 32 NTNNNCEPN-----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN-GHE---RN-L----- 96 (240)
Q Consensus 32 ~~~~~~~~~-----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~-g~~---~~-~----- 96 (240)
-+|+.+.|+ .+++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++ |.+ .. .
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl-~~p~~G~i~~~~g~~~~~~~~~~~~~~ 360 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV-LEPTSGEVNVRVGDEWVDMTKPGPDGR 360 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEEecCCccccccccchhhH
Confidence 467787774 36799999999999999999999999999999999997 56789999995 532 11 1
Q ss_pred hhhhhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-----hhhhccCCCCCchhhHH
Q psy310 97 SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-----AQRCFLSGPWGTFESSV 171 (240)
Q Consensus 97 ~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~ 171 (240)
...++.++|++|++.+++.+++.+++.+..... ......++.+.++++.+++.+ .....+...|++++|++
T Consensus 361 ~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv 436 (520)
T TIGR03269 361 GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV 436 (520)
T ss_pred HHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence 123456899999998888899999987643211 122223345667777777754 34556667889999999
Q ss_pred HHHHHHhcc
Q psy310 172 LLALAMYNR 180 (240)
Q Consensus 172 ~~~~~~~~~ 180 (240)
.+++++...
T Consensus 437 ~laral~~~ 445 (520)
T TIGR03269 437 ALAQVLIKE 445 (520)
T ss_pred HHHHHHhcC
Confidence 999999875
No 256
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.4e-19 Score=147.78 Aligned_cols=157 Identities=22% Similarity=0.252 Sum_probs=120.5
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEccc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQD 109 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~ 109 (240)
-+|..|+.+++.+|.++||++.+||++-|.||||||||||||+|+|+ ..|++|+|.+.+..... ..+++..-|+-+.
T Consensus 5 a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL-l~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~ 83 (209)
T COG4133 5 AENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL-LRPDAGEVYWQGEPIQNVRESYHQALLYLGHQ 83 (209)
T ss_pred hhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc-cCCCCCeEEecCCCCccchhhHHHHHHHhhcc
Confidence 35788999999999999999999999999999999999999999997 56899999999876542 2355778899999
Q ss_pred ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeecc
Q psy310 110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKS 189 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 189 (240)
+-+-..+|++||+.|....... .. ...+.+.+..+++....+......|.++++++.+++-+.... +-.||+.
T Consensus 84 ~giK~eLTa~ENL~F~~~~~~~--~~----~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~-pLWiLDE 156 (209)
T COG4133 84 PGIKTELTALENLHFWQRFHGS--GN----AATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPA-PLWILDE 156 (209)
T ss_pred ccccchhhHHHHHHHHHHHhCC--Cc----hhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCC-CceeecC
Confidence 9999999999999987654422 11 223444556666666655555567788888888888776642 3456666
Q ss_pred ceeEEeC
Q psy310 190 VSGRLRS 196 (240)
Q Consensus 190 vsl~I~~ 196 (240)
+---|.+
T Consensus 157 P~taLDk 163 (209)
T COG4133 157 PFTALDK 163 (209)
T ss_pred cccccCH
Confidence 6555444
No 257
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=6.3e-20 Score=156.70 Aligned_cols=141 Identities=26% Similarity=0.302 Sum_probs=98.4
Q ss_pred CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310 33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q 108 (240)
+|+.+.++ .+.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|++|
T Consensus 4 ~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 82 (236)
T cd03253 4 ENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF-YDVSSGSILIDGQDIREVTLDSLRRAIGVVPQ 82 (236)
T ss_pred EEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cCCCCCEEEECCEEhhhCCHHHHHhhEEEECC
Confidence 45677774 47799999999999999999999999999999999997 5688999999997642 2234567999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHH-----HHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDV-----VRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++ .|+.+++.+... .......... +...+..+ ++...........++++++++.++++++..
T Consensus 83 ~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~ 155 (236)
T cd03253 83 DTVLFN-DTIGYNIRYGRP-----DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKN 155 (236)
T ss_pred CChhhc-chHHHHHhhcCC-----CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 998775 699998865311 1111111111 11111111 122222223445778889999999999875
No 258
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.82 E-value=1.6e-19 Score=156.33 Aligned_cols=130 Identities=29% Similarity=0.403 Sum_probs=100.6
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~ 111 (240)
-.|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|.+|+|.+++ +..++|++|++.
T Consensus 7 ~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl-~~p~~G~i~~~~--------~~~i~~v~q~~~ 77 (251)
T PRK09544 7 LENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL-VAPDEGVIKRNG--------KLRIGYVPQKLY 77 (251)
T ss_pred EeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECC--------ccCEEEeccccc
Confidence 35788888888999999999999999999999999999999999997 567899999976 235899999987
Q ss_pred ccccc--cHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANL--TVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~l--tv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++..+ ++.+++.+ ..... .+.+..+++.+++.+.........|+++++++.+++++...
T Consensus 78 ~~~~l~~~~~~~~~~------~~~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 78 LDTTLPLTVNRFLRL------RPGTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNR 138 (251)
T ss_pred cccccChhHHHHHhc------ccccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 76553 45554322 11111 12345566777777666666667888999999999999875
No 259
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.81 E-value=2.9e-19 Score=169.60 Aligned_cols=147 Identities=20% Similarity=0.245 Sum_probs=112.7
Q ss_pred cCCCceecCC-----------CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---
Q psy310 31 TNTNNNCEPN-----------EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--- 96 (240)
Q Consensus 31 ~~~~~~~~~~-----------~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--- 96 (240)
.-+|+.+.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|++ + .+|+|.++|.++..
T Consensus 277 ~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-~~G~i~~~g~~i~~~~~ 354 (529)
T PRK15134 277 DVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-SQGEIWFDGQPLHNLNR 354 (529)
T ss_pred cccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCcEEEECCEEccccch
Confidence 4577888874 467999999999999999999999999999999999984 4 79999999976531
Q ss_pred h---hhhhhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhH
Q psy310 97 S---QFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESS 170 (240)
Q Consensus 97 ~---~~~~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 170 (240)
. ..++.++|++|++ .+++.+++.+++.+...... ........++.+.++++.+++. ......+...|++++|+
T Consensus 355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr 433 (529)
T PRK15134 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR 433 (529)
T ss_pred hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHH
Confidence 1 1245689999997 36778899999886532211 1122233345667788888886 34566677889999999
Q ss_pred HHHHHHHhcc
Q psy310 171 VLLALAMYNR 180 (240)
Q Consensus 171 ~~~~~~~~~~ 180 (240)
+.+++++...
T Consensus 434 v~la~al~~~ 443 (529)
T PRK15134 434 IAIARALILK 443 (529)
T ss_pred HHHHHHHhCC
Confidence 9999999865
No 260
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.4e-19 Score=154.41 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=105.3
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-C---CccEEEECCccCC-------chhhh
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-G---TEGSITINGHERN-------LSQFR 100 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~---~~G~V~v~g~~~~-------~~~~~ 100 (240)
-+|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|+..+ + ++|+|.++|.+.. ....+
T Consensus 19 ~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~ 98 (265)
T PRK14252 19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVR 98 (265)
T ss_pred EEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHh
Confidence 35788888888999999999999999999999999999999999997443 2 7899999986542 12345
Q ss_pred hhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHH
Q psy310 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALA 176 (240)
Q Consensus 101 ~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 176 (240)
+.++|++|++.+++. ++.+++.+..... ... ......+.+..+++.+++. ..........+.++++++.++++
T Consensus 99 ~~i~~~~q~~~~~~~-tv~eni~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 175 (265)
T PRK14252 99 MRISMVFQKPNPFPK-SIFENVAYGLRIR-GVK-RRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARA 175 (265)
T ss_pred ccEEEEccCCcCCcc-hHHHHHHhHHHHc-CCC-hHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHH
Confidence 678999999988875 9999987643221 100 1111223344444444432 23334455678889999999999
Q ss_pred Hhcc
Q psy310 177 MYNR 180 (240)
Q Consensus 177 ~~~~ 180 (240)
++..
T Consensus 176 l~~~ 179 (265)
T PRK14252 176 LATD 179 (265)
T ss_pred HHcC
Confidence 9875
No 261
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.2e-19 Score=158.74 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=112.7
Q ss_pred cCCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhh
Q psy310 31 TNTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQF 99 (240)
Q Consensus 31 ~~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~ 99 (240)
.-+|+++.+. .+++|+++||+|++||++||+|+|||||||||++|+|+... |++|+|.++|.++.. ..+
T Consensus 82 ~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~l 161 (329)
T PRK14257 82 EIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLEL 161 (329)
T ss_pred EEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhh
Confidence 3467887774 46799999999999999999999999999999999998542 568999999988631 245
Q ss_pred hhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHH
Q psy310 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLAL 175 (240)
Q Consensus 100 ~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 175 (240)
++.++|++|++.++. .|+++++.+..... .........+.+..+++..++. ..........|++++|++.+++
T Consensus 162 r~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LAR 238 (329)
T PRK14257 162 RTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIAR 238 (329)
T ss_pred hccEEEEecCCccCC-CcHHHHHHhHHHhc--CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHH
Confidence 678999999998874 79999998653221 1111222233344455554432 2223344557888999999999
Q ss_pred HHhcccccceeeccceeEE
Q psy310 176 AMYNRIHEKTILKSVSGRL 194 (240)
Q Consensus 176 ~~~~~~~~~~il~~vsl~I 194 (240)
+++... +-.+|++..-.+
T Consensus 239 Al~~~p-~IlLLDEPts~L 256 (329)
T PRK14257 239 AIALEP-EVLLMDEPTSAL 256 (329)
T ss_pred HHHhCC-CEEEEeCCcccC
Confidence 998752 333445554444
No 262
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1e-19 Score=144.11 Aligned_cols=144 Identities=25% Similarity=0.301 Sum_probs=118.2
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC--CccEEEECCccCC-chhhhhhceEEcc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG--TEGSITINGHERN-LSQFRKLSCYIMQ 108 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~--~~G~V~v~g~~~~-~~~~~~~~g~v~Q 108 (240)
-+|+....++..+|-++||+|.+||++.|+|||||||||||.-+.|.+.+. .+|++.+++.++. ....++.+|++||
T Consensus 5 l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQ 84 (213)
T COG4136 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQ 84 (213)
T ss_pred eeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeec
Confidence 468889999999999999999999999999999999999999999975543 3899999998764 3445788999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
|+.++++++|.+|+.++.. ..++-..++..+.+.+++.++.......+...+++++.++.+.+.+..
T Consensus 85 D~lLFphlsVg~Nl~fAlp----~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 85 DALLFPHLSVGQNLLFALP----ATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA 151 (213)
T ss_pred ccccccccccccceEEecC----cccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh
Confidence 9999999999999987532 233334677778888888888888777777788887777776665543
No 263
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.81 E-value=4.4e-19 Score=165.76 Aligned_cols=136 Identities=26% Similarity=0.317 Sum_probs=110.6
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-----chhhhhhceEEccccc--ccc
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-----LSQFRKLSCYIMQDNQ--LHA 114 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-----~~~~~~~~g~v~Q~~~--~~~ 114 (240)
..++++|||+|.+||++||||+||||||||+|+|+|+ .+|.+|.|.++|.+.. ....++.+-++||||. +.+
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL-~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL-LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence 5789999999999999999999999999999999998 5568999999998732 2335567889999875 567
Q ss_pred cccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 115 NLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 115 ~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+|+.+.+......+. ......+++.+.++++.+++.. ...+++...|++++|++.+|+++...
T Consensus 383 r~tV~~~i~epL~~~~--~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~ 447 (539)
T COG1123 383 RMTVGDILAEPLRIHG--GGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALE 447 (539)
T ss_pred cccHHHHHHhHHhhhc--ccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcC
Confidence 8899998876654432 2224455667888999998876 46777888999999999999999875
No 264
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.81 E-value=4.4e-19 Score=152.58 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=103.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEEEECCccCCc---hh-hhhhceEEc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSITINGHERNL---SQ-FRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~ 107 (240)
+|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|++ .+|++|+|.++|.+... .. .+..++|++
T Consensus 5 ~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 84 (248)
T PRK09580 5 KDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF 84 (248)
T ss_pred EEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEe
Confidence 46788888889999999999999999999999999999999999974 25789999999976521 11 224689999
Q ss_pred ccccccccccHHHHHHHHH-HHh-cC--CCccHHHHHHHHHHhhhcCCcc-hhhhhccC-CCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVAT-ALK-LG--KDLTKAARKDVVRTLFYRSDTN-HAQRCFLS-GPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~-~~~-~~--~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.+++.++..+...... ... .. ..+........+..+++.+++. +....... ..|+++++++.+++++...
T Consensus 85 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (248)
T PRK09580 85 QYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 163 (248)
T ss_pred cCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 9988777666554433211 010 00 0011112234455666666664 22333333 5788999999999999875
No 265
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.81 E-value=7.7e-20 Score=175.41 Aligned_cols=142 Identities=25% Similarity=0.318 Sum_probs=100.8
Q ss_pred cCCCcee-cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEE
Q psy310 31 TNTNNNC-EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYI 106 (240)
Q Consensus 31 ~~~~~~~-~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v 106 (240)
.-+|++. .++++++|+++||+|++||+++|+||||||||||+++|+|++ |.+|+|.++|.+. ....+++.++||
T Consensus 351 ~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~I~i~g~~i~~~~~~~lr~~i~~v 428 (588)
T PRK11174 351 EAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELRELDPESWRKHLSWV 428 (588)
T ss_pred EEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcEEEECCEecccCCHHHHHhheEEe
Confidence 3457763 445678999999999999999999999999999999999986 5799999999865 345678899999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++.++. .|++||+.+.. +..++++..+.++.. +..+ +.+..-...-...|++++||+.+|++++.
T Consensus 429 ~Q~~~LF~-~TI~eNI~~g~-----~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~ 502 (588)
T PRK11174 429 GQNPQLPH-GTLRDNVLLGN-----PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ 502 (588)
T ss_pred cCCCcCCC-cCHHHHhhcCC-----CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc
Confidence 99998875 59999998631 122333333332221 1111 11111111112367889999999998876
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 503 ~ 503 (588)
T PRK11174 503 P 503 (588)
T ss_pred C
Confidence 3
No 266
>PLN03140 ABC transporter G family member; Provisional
Probab=99.81 E-value=4.1e-19 Score=184.25 Aligned_cols=141 Identities=28% Similarity=0.469 Sum_probs=113.5
Q ss_pred CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEEEECCccCCchhhhhhceEEcccccccccccH
Q psy310 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTV 118 (240)
Q Consensus 40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv 118 (240)
+.+.+|++||++|++||+++|+|||||||||||++|+|...+ +.+|+|.++|.+.....+++.++||+|++.+++.+||
T Consensus 891 ~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred CCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 345799999999999999999999999999999999997432 4689999999876544456778999999999999999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhcc-----CCCCCchhhHHHHHHHHhcc
Q psy310 119 EEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFL-----SGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 119 ~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++.+...++...........+.++++++.+++.+..+..+ .+.++++++++.+++++...
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~ 1037 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVAN 1037 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhC
Confidence 999998765443333344445566788888888877655543 46788999999999999875
No 267
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.81 E-value=4e-19 Score=153.34 Aligned_cols=130 Identities=22% Similarity=0.271 Sum_probs=100.8
Q ss_pred eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcccccccccccHHH
Q psy310 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEE 120 (240)
Q Consensus 44 ~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~~~~~~~ltv~e 120 (240)
+|+++||+|++||+++|+|+||||||||+++|+|++ + .+|+|.++|.+.. ....++.++|++|++.++..+++.+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-P-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-C-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 899999999999999999999999999999999974 4 4899999998653 1233456899999988888889999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 121 AMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 121 ~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
++.+.... ........+.+.++++.+++.+.........++++++++.+++++..
T Consensus 89 nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 89 YLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred HHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 88754211 11122224456667777777766666667788899999999998874
No 268
>KOG0057|consensus
Probab=99.80 E-value=7.6e-20 Score=169.08 Aligned_cols=184 Identities=22% Similarity=0.268 Sum_probs=125.1
Q ss_pred CCCceecCCCce-eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEEc
Q psy310 32 NTNNNCEPNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~~~-~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v~ 107 (240)
-.|+...++.++ +|+++||+|++||.|||+|+|||||||++|+|.+++. ++|+|.++|.++ ....+|+.+||||
T Consensus 354 F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 354 FDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred EEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 357788888877 9999999999999999999999999999999999854 799999999876 3567889999999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhcc-----------CCCCCchhhHHHHHHH
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFL-----------SGPWGTFESSVLLALA 176 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 176 (240)
||..++. -|+.+|+.+.. .....++..+.++ +.++.+.-...+ ...+++++|++.++++
T Consensus 432 Qd~~LFn-dTIl~NI~YGn-----~sas~eeV~e~~k----~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 432 QDSVLFN-DTILYNIKYGN-----PSASDEEVVEACK----RAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARA 501 (591)
T ss_pred Ccccccc-hhHHHHhhcCC-----CCcCHHHHHHHHH----HcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHH
Confidence 9998874 48888887532 1222233333333 223222211111 1256788999999888
Q ss_pred Hhccc----------------------------ccce---eeccceeEEeCCcEEEEEcCCCC--CHHHHHHHHhCCccc
Q psy310 177 MYNRI----------------------------HEKT---ILKSVSGRLRSGELTAIMGPSGA--GKSTLLNILTGYKIL 223 (240)
Q Consensus 177 ~~~~~----------------------------~~~~---il~~vsl~I~~Ge~valvG~NGs--GKSTLlk~l~G~~~~ 223 (240)
+.+.. .+++ |.++.++.-+.- +|-++ +||. .+.|.-.+|.--..|
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~D-kI~~l-~nG~v~e~gth~ell~~s~~~ 579 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFD-KIIVL-DNGTVKEYGTHSELLAPSELY 579 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCC-EEEEE-ECCeeEEeccHHHHhhhhhHH
Confidence 76531 1333 445555443333 34333 3444 555655666545678
Q ss_pred chhhhc
Q psy310 224 RQLWLL 229 (240)
Q Consensus 224 ~~~~~~ 229 (240)
++.|..
T Consensus 580 ~~~w~~ 585 (591)
T KOG0057|consen 580 ADLWTT 585 (591)
T ss_pred HHHhcc
Confidence 889984
No 269
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.80 E-value=2.9e-19 Score=146.11 Aligned_cols=88 Identities=30% Similarity=0.485 Sum_probs=73.3
Q ss_pred CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
+|+.+.+++ +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|++
T Consensus 4 ~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (173)
T cd03246 4 ENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL-LRPTSGRVRLDGADISQWDPNELGDHVGYLP 82 (173)
T ss_pred EEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc-cCCCCCeEEECCEEcccCCHHHHHhheEEEC
Confidence 356666654 5699999999999999999999999999999999997 5678999999997653 223456799999
Q ss_pred ccccccccccHHHHH
Q psy310 108 QDNQLHANLTVEEAM 122 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l 122 (240)
|++.+++ .++.+++
T Consensus 83 q~~~~~~-~tv~~~l 96 (173)
T cd03246 83 QDDELFS-GSIAENI 96 (173)
T ss_pred CCCcccc-CcHHHHC
Confidence 9998776 4888766
No 270
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.9e-19 Score=145.85 Aligned_cols=88 Identities=39% Similarity=0.536 Sum_probs=73.0
Q ss_pred CCceecCCCc--eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 33 TNNNCEPNEK--TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~--~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
+|+.+.++++ .+|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+.. ....++.++|++
T Consensus 4 ~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (171)
T cd03228 4 KNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL-YDPTSGEILIDGVDLRDLDLESLRKNIAYVP 82 (171)
T ss_pred EEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-CCCCCCEEEECCEEhhhcCHHHHHhhEEEEc
Confidence 3567777665 799999999999999999999999999999999997 5678999999997642 123456789999
Q ss_pred ccccccccccHHHHH
Q psy310 108 QDNQLHANLTVEEAM 122 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l 122 (240)
|++.+++ .++.|++
T Consensus 83 ~~~~~~~-~t~~e~l 96 (171)
T cd03228 83 QDPFLFS-GTIRENI 96 (171)
T ss_pred CCchhcc-chHHHHh
Confidence 9987665 5777765
No 271
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.80 E-value=2.7e-19 Score=146.87 Aligned_cols=88 Identities=33% Similarity=0.452 Sum_probs=72.4
Q ss_pred CCceecCCCc--eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcc
Q psy310 33 TNNNCEPNEK--TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~--~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q 108 (240)
.|+.+.++++ ++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+... ...++.++|++|
T Consensus 4 ~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 82 (178)
T cd03247 4 NNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD-LKPQQGEITLDGVPVSDLEKALSSLISVLNQ 82 (178)
T ss_pred EEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-CCCCCCEEEECCEEHHHHHHHHHhhEEEEcc
Confidence 3556666554 799999999999999999999999999999999997 56789999999975421 234567899999
Q ss_pred cccccccccHHHHH
Q psy310 109 DNQLHANLTVEEAM 122 (240)
Q Consensus 109 ~~~~~~~ltv~e~l 122 (240)
++.+++ .++.|++
T Consensus 83 ~~~~~~-~tv~~~i 95 (178)
T cd03247 83 RPYLFD-TTLRNNL 95 (178)
T ss_pred CCeeec-ccHHHhh
Confidence 987764 5787765
No 272
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.7e-19 Score=168.15 Aligned_cols=145 Identities=18% Similarity=0.274 Sum_probs=107.5
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q 108 (240)
+|+.+.++ .+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|++|
T Consensus 269 ~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q 345 (510)
T PRK09700 269 RNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV-DKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345 (510)
T ss_pred eCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CcCCCCeEEECCEECCCCCHHHHHHCCcEEccC
Confidence 35555432 489999999999999999999999999999999997 56789999999976531 123456899999
Q ss_pred cc---cccccccHHHHHHHHHHHh---cCC--C-ccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHh
Q psy310 109 DN---QLHANLTVEEAMNVATALK---LGK--D-LTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 109 ~~---~~~~~ltv~e~l~~~~~~~---~~~--~-l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
++ .+++.+++.+++.+..... ... . ......+..+.++++.+++. +.....+...|++++|++.+++++.
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~ 425 (510)
T PRK09700 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC 425 (510)
T ss_pred ccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh
Confidence 84 5777899999887542110 000 0 11222234567788888885 5566667788999999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 426 ~~ 427 (510)
T PRK09700 426 CC 427 (510)
T ss_pred cC
Confidence 65
No 273
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.80 E-value=6.1e-19 Score=145.32 Aligned_cols=88 Identities=26% Similarity=0.428 Sum_probs=73.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q 108 (240)
+|+.+.+ +|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|
T Consensus 8 ~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 82 (182)
T cd03215 8 RGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL-RPPASGEITLDGKPVTRRSPRDAIRAGIAYVPE 82 (182)
T ss_pred eccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEECCccCHHHHHhCCeEEecC
Confidence 4556665 89999999999999999999999999999999997 56789999999977532 123567999999
Q ss_pred cc---cccccccHHHHHHHH
Q psy310 109 DN---QLHANLTVEEAMNVA 125 (240)
Q Consensus 109 ~~---~~~~~ltv~e~l~~~ 125 (240)
++ .+++.+++.|++.+.
T Consensus 83 ~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 83 DRKREGLVLDLSVAENIALS 102 (182)
T ss_pred CcccCcccCCCcHHHHHHHH
Confidence 85 467788999988653
No 274
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.80 E-value=3.1e-19 Score=156.45 Aligned_cols=135 Identities=20% Similarity=0.255 Sum_probs=102.2
Q ss_pred CCceecC--CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 33 TNNNCEP--NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~--~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
+|+++.+ +..++|+++||+|++||+++|+|+||||||||+++|+|++ + .+|+|.++|.++. ...+++.++|++
T Consensus 6 ~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~-~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~ 83 (275)
T cd03289 6 KDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-N-TEGDIQIDGVSWNSVPLQKWRKAFGVIP 83 (275)
T ss_pred EEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEhhhCCHHHHhhhEEEEC
Confidence 4667777 5577999999999999999999999999999999999985 4 6899999998753 234567899999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCC-----------CCCchhhHHHHHHH
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSG-----------PWGTFESSVLLALA 176 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 176 (240)
|++.+++ .|+.+++... . ..... .+.++++.+++.+....++.+ .+.++++++.++++
T Consensus 84 q~~~lf~-~tv~~nl~~~---~---~~~~~----~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRa 152 (275)
T cd03289 84 QKVFIFS-GTFRKNLDPY---G---KWSDE----EIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARS 152 (275)
T ss_pred CCcccch-hhHHHHhhhc---c---CCCHH----HHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 9999886 5999988521 1 11122 233444556665554444443 77888999999999
Q ss_pred Hhcc
Q psy310 177 MYNR 180 (240)
Q Consensus 177 ~~~~ 180 (240)
+...
T Consensus 153 ll~~ 156 (275)
T cd03289 153 VLSK 156 (275)
T ss_pred HhcC
Confidence 9875
No 275
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=1.9e-19 Score=150.63 Aligned_cols=130 Identities=24% Similarity=0.300 Sum_probs=93.2
Q ss_pred CCceecCCCc-----eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEc
Q psy310 33 TNNNCEPNEK-----TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~-----~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~ 107 (240)
+|+.+.++.+ ++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++| .++|++
T Consensus 4 ~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~-~~~~~G~i~~~g----------~i~~~~ 72 (204)
T cd03250 4 EDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE-LEKLSGSVSVPG----------SIAYVS 72 (204)
T ss_pred eEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc-CCCCCCeEEEcC----------EEEEEe
Confidence 4677777764 799999999999999999999999999999999997 568899999988 489999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHH-----hhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRT-----LFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~-----l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.++ ..|+.|++.+... .......+..+. .+... +............+.++++++.++++++..
T Consensus 73 q~~~l~-~~t~~enl~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 73 QEPWIQ-NGTIRENILFGKP------FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred cCchhc-cCcHHHHhccCCC------cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999887 5699998875311 111111111111 11111 111112223445778889999999999875
No 276
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=3.5e-19 Score=150.66 Aligned_cols=146 Identities=22% Similarity=0.226 Sum_probs=101.4
Q ss_pred CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
+|+.+.+++ +++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+.. ....++.++|++
T Consensus 6 ~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 84 (221)
T cd03244 6 KNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL-VELSSGSILIDGVDISKIGLHDLRSRISIIP 84 (221)
T ss_pred EEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC-CCCCCCEEEECCEEhHhCCHHHHhhhEEEEC
Confidence 456666653 4799999999999999999999999999999999997 5678999999997642 234467899999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-----------hhhccCCCCCchhhHHHHHHH
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-----------QRCFLSGPWGTFESSVLLALA 176 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 176 (240)
|++.+++ .++.|++.+.. ...... +.+.++.+++.+. ........+.++++++.++++
T Consensus 85 q~~~l~~-~tv~enl~~~~------~~~~~~----~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lara 153 (221)
T cd03244 85 QDPVLFS-GTIRSNLDPFG------EYSDEE----LWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARA 153 (221)
T ss_pred CCCcccc-chHHHHhCcCC------CCCHHH----HHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHH
Confidence 9998765 58988875311 111111 1222222232221 123445677889999999999
Q ss_pred Hhcccccceeeccce
Q psy310 177 MYNRIHEKTILKSVS 191 (240)
Q Consensus 177 ~~~~~~~~~il~~vs 191 (240)
+.... +-.++++..
T Consensus 154 l~~~p-~llllDEP~ 167 (221)
T cd03244 154 LLRKS-KILVLDEAT 167 (221)
T ss_pred HhcCC-CEEEEeCcc
Confidence 98752 233444443
No 277
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.80 E-value=7e-19 Score=148.71 Aligned_cols=135 Identities=24% Similarity=0.258 Sum_probs=95.2
Q ss_pred CceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhhhhceE
Q psy310 34 NNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFRKLSCY 105 (240)
Q Consensus 34 ~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~~~~g~ 105 (240)
|..+.++ ..++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|
T Consensus 5 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 83 (218)
T cd03290 5 NGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE-MQTLEGKVHWSNKNESEPSFEATRSRNRYSVAY 83 (218)
T ss_pred eeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-CCCCCCeEEECCcccccccccccchhhcceEEE
Confidence 3445554 46799999999999999999999999999999999997 56789999999976421 123457899
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-----------hhhccCCCCCchhhHHHHH
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-----------QRCFLSGPWGTFESSVLLA 174 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 174 (240)
++|++.++ ..++.+++.+... ....... ++.+.+++.+. ........++++++++.++
T Consensus 84 ~~q~~~~~-~~t~~~nl~~~~~------~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03290 84 AAQKPWLL-NATVEENITFGSP------FNKQRYK----AVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA 152 (218)
T ss_pred EcCCCccc-cccHHHHHhhcCc------CCHHHHH----HHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence 99999877 5799998865311 1111111 12222222111 1123455778899999999
Q ss_pred HHHhcc
Q psy310 175 LAMYNR 180 (240)
Q Consensus 175 ~~~~~~ 180 (240)
++++..
T Consensus 153 ral~~~ 158 (218)
T cd03290 153 RALYQN 158 (218)
T ss_pred HHHhhC
Confidence 999875
No 278
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.80 E-value=5.6e-19 Score=166.17 Aligned_cols=148 Identities=20% Similarity=0.247 Sum_probs=108.6
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC-CccEEEECCccCCc----hhhhhhceE
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG-TEGSITINGHERNL----SQFRKLSCY 105 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~-~~G~V~v~g~~~~~----~~~~~~~g~ 105 (240)
.-+|+.+.|+++.+|+++||+|.+||+++|+|||||||||||++|+|+ .++ ++|+|.++|.+... ...++.++|
T Consensus 262 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 340 (490)
T PRK10938 262 VLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD-HPQGYSNDLTLFGRRRGSGETIWDIKKHIGY 340 (490)
T ss_pred EEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-CCcccCCeEEEecccCCCCCCHHHHHhhceE
Confidence 357788899888899999999999999999999999999999999997 444 68999999975421 223567999
Q ss_pred Eccccccccc--ccHHHHHHHHHHH--hcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHAN--LTVEEAMNVATAL--KLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~--ltv~e~l~~~~~~--~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++|++.+... .++++.+...... ........ ..++.++++++.+++.+ .....+...|++++|++.+++++...
T Consensus 341 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 419 (490)
T PRK10938 341 VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSD-RQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKH 419 (490)
T ss_pred ECHHHHhhcccCCcHHHHHHhccccccccccCCCH-HHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcC
Confidence 9998765432 4566655432110 00011112 22445677888888876 55666677899999999999999875
No 279
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=1.3e-19 Score=148.91 Aligned_cols=161 Identities=20% Similarity=0.237 Sum_probs=128.0
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC-ccCC----chhhhhhceEE
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-HERN----LSQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g-~~~~----~~~~~~~~g~v 106 (240)
-.++..+|++..+|+++||+|.+||.-+|||||||||||++.+|.|. .+|..|+|.++| .++. ....+.-+|.-
T Consensus 8 ~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK-trp~~G~v~f~g~~dl~~~~e~~IAr~GIGRK 86 (249)
T COG4674 8 LDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK-TRPQEGEVLFDGDTDLTKLPEHRIARAGIGRK 86 (249)
T ss_pred EeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc-CCCCcceEEEcCchhhccCCHHHHHHhccCcc
Confidence 35789999999999999999999999999999999999999999997 778899999999 4442 12335668999
Q ss_pred cccccccccccHHHHHHHHHHHhcC------CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLG------KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~------~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
||.|..++.+||+||+.++.....+ .... ...+.+++.++...++.+.........+.+++|.+.+.+-+++.
T Consensus 87 FQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~-~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~ 165 (249)
T COG4674 87 FQKPTVFENLTVRENLELALNRDKSVFASLFARLR-AEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQD 165 (249)
T ss_pred ccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcC-hhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccC
Confidence 9999999999999999876432110 1111 23355788888888888888777777888889999888877765
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHH
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKS 211 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKS 211 (240)
.++.|+.++=+|=|
T Consensus 166 -----------------P~lLLlDEPvAGMT 179 (249)
T COG4674 166 -----------------PKLLLLDEPVAGMT 179 (249)
T ss_pred -----------------CcEEEecCccCCCc
Confidence 46777777777754
No 280
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.3e-18 Score=151.22 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=105.4
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC----CccEEEECCccCC-c--hh----hhhhceEEcccc
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITINGHERN-L--SQ----FRKLSCYIMQDN 110 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~----~~G~V~v~g~~~~-~--~~----~~~~~g~v~Q~~ 110 (240)
..++++|||+|.+||++||||+|||||||+.++|+|+++.+ .+|+|.++|.++. . .+ ..+.++|+||+|
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 57999999999999999999999999999999999986522 4789999998652 1 11 125789999998
Q ss_pred c--ccccccHHHHHHHHHHHhcCCCc-cHHHHHHHHHHhhhcCCcchhh---hhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 Q--LHANLTVEEAMNVATALKLGKDL-TKAARKDVVRTLFYRSDTNHAQ---RCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~--~~~~ltv~e~l~~~~~~~~~~~l-~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
. +.+.+++.+.+......+. .. .+++..+.+.++++.+++.... ..++...|+++.||+++|.++...
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~ 171 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALN 171 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCC
Confidence 5 5566777776654433322 12 3445567788899999987653 556777899999999999999875
No 281
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.79 E-value=1.6e-19 Score=172.61 Aligned_cols=141 Identities=26% Similarity=0.340 Sum_probs=105.9
Q ss_pred cCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEE
Q psy310 31 TNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYI 106 (240)
Q Consensus 31 ~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v 106 (240)
.-.|++..|+ ++++|+++||+|++||++|||||||||||||+++|.++++ |.+|+|.++|.++ ....+++.+++|
T Consensus 330 ~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 330 EFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 4578999999 6899999999999999999999999999999999999854 6899999999765 456778999999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcCCcchhhhhcc----CCCCCchhhHHHHHHHH
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRSDTNHAQRCFL----SGPWGTFESSVLLALAM 177 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 177 (240)
+|++.++. -|+++|+.+... +.++++..+.++.. ...+ +...+..+ ...|++++|++.+|+++
T Consensus 409 ~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~G~~LSgGQrQrlaiARal 480 (567)
T COG1132 409 SQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIANL--PDGYDTIVGERGVNLSGGQRQRLAIARAL 480 (567)
T ss_pred cccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhC--cccccceecCCCccCCHHHHHHHHHHHHH
Confidence 99999987 899999986421 12333333333332 1111 11111111 23677899999999988
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
...
T Consensus 481 l~~ 483 (567)
T COG1132 481 LRN 483 (567)
T ss_pred hcC
Confidence 764
No 282
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.79 E-value=2.2e-19 Score=174.42 Aligned_cols=142 Identities=23% Similarity=0.310 Sum_probs=102.4
Q ss_pred CCCceecCCCc--eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEE
Q psy310 32 NTNNNCEPNEK--TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~~~--~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v 106 (240)
-+|+...|+.. ++|+|+||+|++||++||||+||||||||+|+|.|++ .|.+|+|.++|.+. ....+|+.++||
T Consensus 474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~~G~I~~dg~dl~~i~~~~lR~~ig~V 552 (709)
T COG2274 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQQGRILLDGVDLNDIDLASLRRQVGYV 552 (709)
T ss_pred EEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEeHHhcCHHHHHhheeEE
Confidence 35677777766 6999999999999999999999999999999999985 57899999999876 456789999999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++.++ .-|++||+.+.. ...+.++..+.++.. ...+ +....-...-...|++++|++++|+++.+
T Consensus 553 ~Q~~~Lf-~gSI~eNi~l~~-----p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 553 LQDPFLF-SGSIRENIALGN-----PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred cccchhh-cCcHHHHHhcCC-----CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 9999876 568999988532 122222222222211 1110 01111111223467889999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 627 ~ 627 (709)
T COG2274 627 K 627 (709)
T ss_pred C
Confidence 5
No 283
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.79 E-value=8.3e-19 Score=171.21 Aligned_cols=138 Identities=25% Similarity=0.317 Sum_probs=102.6
Q ss_pred cCCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310 31 TNTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 31 ~~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
.-+|++..|+ ++++|+++||+|++||+++|+|+||||||||+++|+|++ .|.+|+|.++|.+.. ...+++.++|
T Consensus 453 ~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~ 531 (686)
T TIGR03797 453 EVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-TPESGSVFYDGQDLAGLDVQAVRRQLGV 531 (686)
T ss_pred EEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcCcCCHHHHHhccEE
Confidence 3467888874 468999999999999999999999999999999999985 578999999998763 4567889999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhh-------h----ccCCCCCchhhHHHHH
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR-------C----FLSGPWGTFESSVLLA 174 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~ 174 (240)
|+|++.++. .|++||+.+.. + .+.++..+. ++..++.+... . .-...|++++|++.++
T Consensus 532 v~Q~~~lf~-gTI~eNi~~~~-----~-~~~e~i~~a----l~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA 600 (686)
T TIGR03797 532 VLQNGRLMS-GSIFENIAGGA-----P-LTLDEAWEA----ARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600 (686)
T ss_pred EccCCccCc-ccHHHHHhcCC-----C-CCHHHHHHH----HHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 999999875 59999987531 1 222222222 22222221111 1 1123678899999999
Q ss_pred HHHhcc
Q psy310 175 LAMYNR 180 (240)
Q Consensus 175 ~~~~~~ 180 (240)
+++++.
T Consensus 601 RAll~~ 606 (686)
T TIGR03797 601 RALVRK 606 (686)
T ss_pred HHHhcC
Confidence 999875
No 284
>KOG0927|consensus
Probab=99.79 E-value=7.8e-19 Score=162.13 Aligned_cols=51 Identities=25% Similarity=0.394 Sum_probs=45.6
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT 83 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~ 83 (240)
--|....+.+..+++|++|.+.+|+++||+|+|||||||+|++|+|. ..|.
T Consensus 78 ~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~-e~P~ 128 (614)
T KOG0927|consen 78 IESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGR-EVPI 128 (614)
T ss_pred eeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcC-CCCC
Confidence 45677888999999999999999999999999999999999999996 3343
No 285
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.79 E-value=4e-19 Score=154.09 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=97.3
Q ss_pred CCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 32 NTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
-+|+.+.++. +.+|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+.. ....++.++|+
T Consensus 22 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v 100 (257)
T cd03288 22 IHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM-VDIFDGKIVIDGIDISKLPLHTLRSRLSII 100 (257)
T ss_pred EEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc-cCCCCCeEEECCEEhhhCCHHHHhhhEEEE
Confidence 3566777765 5799999999999999999999999999999999997 5678999999998653 22456779999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHH-----HHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV-----VRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++.+++ .++.+++.... .......... +..++..+ ++...........+.++++++.++++++.
T Consensus 101 ~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 101 LQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred CCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99998765 48887664210 0011111111 11122222 22222222334567888999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 174 ~ 174 (257)
T cd03288 174 K 174 (257)
T ss_pred C
Confidence 5
No 286
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.78 E-value=1.4e-18 Score=141.33 Aligned_cols=82 Identities=27% Similarity=0.329 Sum_probs=69.9
Q ss_pred CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310 33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.++ .+++|+++||+|.+||+++|+||||||||||+++|+|+ .++.+|+|.+++. +.++|++|++.
T Consensus 4 ~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~~~--------~~i~~~~q~~~ 74 (166)
T cd03223 4 ENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL-WPWGSGRIGMPEG--------EDLLFLPQRPY 74 (166)
T ss_pred EEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCC--------ceEEEECCCCc
Confidence 45667774 46899999999999999999999999999999999997 5678999999773 56899999987
Q ss_pred ccccccHHHHHHH
Q psy310 112 LHANLTVEEAMNV 124 (240)
Q Consensus 112 ~~~~ltv~e~l~~ 124 (240)
++ ..++.|++.+
T Consensus 75 ~~-~~tv~~nl~~ 86 (166)
T cd03223 75 LP-LGTLREQLIY 86 (166)
T ss_pred cc-cccHHHHhhc
Confidence 64 5688888764
No 287
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.78 E-value=3.1e-18 Score=166.24 Aligned_cols=144 Identities=26% Similarity=0.316 Sum_probs=113.7
Q ss_pred CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh----hhh
Q psy310 33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ----FRK 101 (240)
Q Consensus 33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~----~~~ 101 (240)
+|+.+.++. +++|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+... .+ .++
T Consensus 8 ~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 86 (648)
T PRK10535 8 KDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL-DKPTSGTYRVAGQDVATLDADALAQLRRE 86 (648)
T ss_pred eeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCeEEEECCEEcCcCCHHHHHHHHhc
Confidence 466777642 5799999999999999999999999999999999998 56789999999987532 11 145
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.++|++|++.+++..++.|++.+..... ........+.+.++++.+++.+..+......+.++++++.+++++...
T Consensus 87 ~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~ 162 (648)
T PRK10535 87 HFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162 (648)
T ss_pred cEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 7899999999998999999887643221 122333445667778888887766666677889999999999999875
No 288
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.78 E-value=7e-19 Score=144.75 Aligned_cols=75 Identities=32% Similarity=0.555 Sum_probs=62.9
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q 108 (240)
+|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ....+..++|++|
T Consensus 3 ~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~-~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 80 (180)
T cd03214 3 ENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL-LKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80 (180)
T ss_pred eEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence 4677888888899999999999999999999999999999999997 5678999999997653 1223445677776
No 289
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.3e-18 Score=143.71 Aligned_cols=146 Identities=22% Similarity=0.198 Sum_probs=108.0
Q ss_pred CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--CCCccEEEECCccCCc----hhhhhhceE
Q psy310 33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--SGTEGSITINGHERNL----SQFRKLSCY 105 (240)
Q Consensus 33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~~~~G~V~v~g~~~~~----~~~~~~~g~ 105 (240)
+|+-++-.+ +.+|++||++|++||+.+|+||||||||||..+|+|. + ...+|+|.++|.++.. ...+.-+..
T Consensus 7 ~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~-p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifL 85 (251)
T COG0396 7 KDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTEGEILFDGEDILELSPDERARAGIFL 85 (251)
T ss_pred eeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCC-CCceEecceEEECCcccccCCHhHHHhcCCEE
Confidence 456666677 5999999999999999999999999999999999996 4 2468999999998642 223456778
Q ss_pred EcccccccccccHHHHHHHHHHHhcCC-CccHHHHHHHHHHhhhcCCcch-hhhh-ccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGK-DLTKAARKDVVRTLFYRSDTNH-AQRC-FLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
-||.|.-++..++.+.++.+....... .+ .....+.+++.++.+++.. ...+ .-.+.|++++.+..+...+...
T Consensus 86 afQ~P~ei~GV~~~~fLr~a~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~le 162 (251)
T COG0396 86 AFQYPVEIPGVTNSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLE 162 (251)
T ss_pred eecCCccCCCeeHHHHHHHHHHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcC
Confidence 999999999999999888765432221 11 2234555666677777655 3333 3457888888888777666654
No 290
>KOG0058|consensus
Probab=99.78 E-value=3.3e-19 Score=169.48 Aligned_cols=143 Identities=21% Similarity=0.267 Sum_probs=103.9
Q ss_pred cCCCceecCCCc---eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---Cchhhhhhce
Q psy310 31 TNTNNNCEPNEK---TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSC 104 (240)
Q Consensus 31 ~~~~~~~~~~~~---~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g 104 (240)
.-+||+-+|..+ ++|+|+||+|+|||+||||||||+||||++.+|-.+|. |.+|+|.++|.++ +...+++.+|
T Consensus 467 eF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~-PtsG~IllDG~~i~~~~~~~lr~~Ig 545 (716)
T KOG0058|consen 467 EFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD-PTSGRILLDGVPISDINHKYLRRKIG 545 (716)
T ss_pred EEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCeehhhcCHHHHHHHee
Confidence 456888888876 49999999999999999999999999999999999865 7899999999876 3456789999
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhc---CCcchhhhh----ccCCCCCchhhHHHHHHHH
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYR---SDTNHAQRC----FLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 177 (240)
+|.|+|.++. -|+.||+.+... ..+.++....++..-.+ ..+++.... .-...+++++||+.+|+++
T Consensus 546 ~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL 619 (716)
T KOG0058|consen 546 LVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL 619 (716)
T ss_pred eeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH
Confidence 9999999875 589999986432 22333333333322111 001111111 1123578899999999998
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
.+.
T Consensus 620 lr~ 622 (716)
T KOG0058|consen 620 LRN 622 (716)
T ss_pred hcC
Confidence 763
No 291
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.78 E-value=1.3e-18 Score=145.43 Aligned_cols=90 Identities=28% Similarity=0.355 Sum_probs=74.5
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEEEECCccCCc---hh-hhhhceEEc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSITINGHERNL---SQ-FRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~ 107 (240)
.|+.+.++++++|+++||+|.+||+++|+|+||||||||+++|+|+. .+|.+|+|.++|.+... .. .+..++|++
T Consensus 4 ~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 83 (200)
T cd03217 4 KDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAF 83 (200)
T ss_pred EEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEee
Confidence 46778888888999999999999999999999999999999999974 25789999999986532 11 134599999
Q ss_pred ccccccccccHHHHH
Q psy310 108 QDNQLHANLTVEEAM 122 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l 122 (240)
|++.+++..++.+++
T Consensus 84 q~~~~~~~~~~~~~l 98 (200)
T cd03217 84 QYPPEIPGVKNADFL 98 (200)
T ss_pred cChhhccCccHHHHH
Confidence 999887777776655
No 292
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.78 E-value=3.3e-19 Score=174.58 Aligned_cols=143 Identities=18% Similarity=0.175 Sum_probs=102.8
Q ss_pred cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceE
Q psy310 31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCY 105 (240)
Q Consensus 31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~ 105 (240)
.-+|++.+|++ +++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+. ....+++.++|
T Consensus 479 ~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~ 557 (710)
T TIGR03796 479 ELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY-QPWSGEILFDGIPREEIPREVLANSVAM 557 (710)
T ss_pred EEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEeHHHCCHHHHHhheeE
Confidence 34678888764 68999999999999999999999999999999999985 57899999999875 34567899999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
|+|++.++. .|++||+.+.. ...+.+...+.++.. +..+ +.+..-...-...|++++|++.++++++
T Consensus 558 v~Q~~~lf~-gTi~eNi~l~~-----~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 558 VDQDIFLFE-GTVRDNLTLWD-----PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred EecCChhhh-ccHHHHhhCCC-----CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 999998874 59999997521 122333333332221 1111 1111111111236788999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 632 ~~ 633 (710)
T TIGR03796 632 RN 633 (710)
T ss_pred hC
Confidence 75
No 293
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.78 E-value=5.9e-19 Score=172.78 Aligned_cols=143 Identities=20% Similarity=0.254 Sum_probs=101.2
Q ss_pred CCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEEc
Q psy310 32 NTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v~ 107 (240)
-+|+...|+ ++++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+. ....+++.++||+
T Consensus 476 ~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 554 (708)
T TIGR01193 476 INDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-QARSGEILLNGFSLKDIDRHTLRQFINYLP 554 (708)
T ss_pred EEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCCcEEEECCEEHHHcCHHHHHHheEEEe
Confidence 357788876 468999999999999999999999999999999999985 57899999999865 3456788999999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.++.. |++||+.+.. ....+.+...+.++.. +..+ +.+..-...-...|++++|++.+++++++.
T Consensus 555 Q~~~lf~g-TI~eNi~l~~----~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 555 QEPYIFSG-SILENLLLGA----KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred cCceehhH-HHHHHHhccC----CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 99988754 9999998531 1122233222222221 1110 011100111123678899999999988764
No 294
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.78 E-value=2.6e-18 Score=144.09 Aligned_cols=140 Identities=24% Similarity=0.274 Sum_probs=100.4
Q ss_pred CCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 32 NTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
-+|+.+.++. .++|+++||+|++||+++|+|+|||||||||++|+|+ .+|.+|+|.++|.+.. ....++.++|+
T Consensus 9 ~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 87 (207)
T cd03369 9 VENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF-LEAEEGKIEIDGIDISTIPLEDLRSSLTII 87 (207)
T ss_pred EEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc-cCCCCCeEEECCEEhHHCCHHHHHhhEEEE
Confidence 3567777764 4799999999999999999999999999999999997 5678999999997642 22345679999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhccccccee
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTI 186 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 186 (240)
+|++.+++ .++.+++.+.. ...... +.+.++ + .......++++.+++.+++++... .+-.+
T Consensus 88 ~q~~~~~~-~tv~~~l~~~~------~~~~~~----~~~~l~---~----~~~~~~LS~G~~qrv~laral~~~-p~lll 148 (207)
T cd03369 88 PQDPTLFS-GTIRSNLDPFD------EYSDEE----IYGALR---V----SEGGLNLSQGQRQLLCLARALLKR-PRVLV 148 (207)
T ss_pred ecCCcccC-ccHHHHhcccC------CCCHHH----HHHHhh---c----cCCCCcCCHHHHHHHHHHHHHhhC-CCEEE
Confidence 99998776 59999875311 111111 222222 1 223445678889999999999864 23334
Q ss_pred eccce
Q psy310 187 LKSVS 191 (240)
Q Consensus 187 l~~vs 191 (240)
+++..
T Consensus 149 lDEP~ 153 (207)
T cd03369 149 LDEAT 153 (207)
T ss_pred EeCCc
Confidence 44444
No 295
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.78 E-value=5.6e-19 Score=167.47 Aligned_cols=149 Identities=29% Similarity=0.336 Sum_probs=106.0
Q ss_pred cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310 31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
.-+|+...|++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+.. ...+++.++|
T Consensus 322 ~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~~~~G~I~~~g~~i~~~~~~~lr~~i~~ 400 (529)
T TIGR02857 322 EFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-VDPTEGSIAVNGVPLADADADSWRDQIAW 400 (529)
T ss_pred EEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEehhhCCHHHHHhheEE
Confidence 34577888765 4799999999999999999999999999999999998 4578999999998753 3567889999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-----------hhhccCCCCCchhhHHHHH
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-----------QRCFLSGPWGTFESSVLLA 174 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 174 (240)
|+|++.++. .|++||+.+.. ....++...+. ++..++.+. ....-...+++++|++.++
T Consensus 401 v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~~~i~~a----~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~la 470 (529)
T TIGR02857 401 VPQHPFLFA-GTIAENIRLAR-----PDASDAEIRRA----LERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALA 470 (529)
T ss_pred EcCCCcccC-cCHHHHHhccC-----CCCCHHHHHHH----HHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHH
Confidence 999998875 69999997531 11222222222 222222111 1111223678899999999
Q ss_pred HHHhcccccceeeccce
Q psy310 175 LAMYNRIHEKTILKSVS 191 (240)
Q Consensus 175 ~~~~~~~~~~~il~~vs 191 (240)
+++.+.. +-.+||+.+
T Consensus 471 Ral~~~~-~ililDE~t 486 (529)
T TIGR02857 471 RAFLRDA-PLLLLDEPT 486 (529)
T ss_pred HHHhcCC-CEEEEeCcc
Confidence 9998752 333444443
No 296
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.78 E-value=7.3e-19 Score=168.87 Aligned_cols=138 Identities=21% Similarity=0.242 Sum_probs=102.7
Q ss_pred cCCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 31 TNTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 31 ~~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
.-+|++..+++ +++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+.. ...+++.++||
T Consensus 342 ~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 342 DIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY-PLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 34677887754 67999999999999999999999999999999999985 578999999998753 45678999999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhh-----------hccCCCCCchhhHHHHHH
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR-----------CFLSGPWGTFESSVLLAL 175 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 175 (240)
+|++.+++. |+++|+.+.. ..+++...+ +++..++.+... ..-...|++++|++.+++
T Consensus 421 ~Q~~~lF~~-Ti~~NI~~~~------~~~d~~i~~----a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialAR 489 (592)
T PRK10790 421 QQDPVVLAD-TFLANVTLGR------DISEEQVWQ----ALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489 (592)
T ss_pred ccCCccccc-hHHHHHHhCC------CCCHHHHHH----HHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999998875 9999998632 122222222 222222221111 111236778999999999
Q ss_pred HHhcc
Q psy310 176 AMYNR 180 (240)
Q Consensus 176 ~~~~~ 180 (240)
+++..
T Consensus 490 aLl~~ 494 (592)
T PRK10790 490 VLVQT 494 (592)
T ss_pred HHHhC
Confidence 99875
No 297
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.78 E-value=3.1e-18 Score=161.62 Aligned_cols=137 Identities=24% Similarity=0.339 Sum_probs=104.1
Q ss_pred eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcccc---ccccc
Q psy310 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQDN---QLHAN 115 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q~~---~~~~~ 115 (240)
.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++.. ...++.++|++|++ .+++.
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~-~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA-LPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC-CCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 479999999999999999999999999999999997 56789999999976531 12345699999996 46778
Q ss_pred ccHHHHHHHHHHHhcCC---CccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 116 LTVEEAMNVATALKLGK---DLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 116 ltv~e~l~~~~~~~~~~---~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+++.+........ ........+.++++++.+++. +.........|++++|++.+++++...
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~ 413 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTR 413 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhC
Confidence 99999987642111100 012223345567788888874 455666777899999999999999865
No 298
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.78 E-value=8.2e-19 Score=168.08 Aligned_cols=145 Identities=20% Similarity=0.262 Sum_probs=102.7
Q ss_pred ccCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhce
Q psy310 30 NTNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSC 104 (240)
Q Consensus 30 ~~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g 104 (240)
-.-+|++..+.+ +++|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+.. ...+++.++
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl-~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF-YDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc-cCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 344578888754 6799999999999999999999999999999999998 4578999999998753 345678899
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHH
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
||+|++.+++ .|++||+.+.. ....+.++..+.++.+ ...+ +++......-...+++++|++.+++++
T Consensus 421 ~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal 495 (582)
T PRK11176 421 LVSQNVHLFN-DTIANNIAYAR----TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_pred EEccCceeec-chHHHHHhcCC----CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 9999998875 69999997531 1112233333322221 1111 011100011123678899999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
++.
T Consensus 496 l~~ 498 (582)
T PRK11176 496 LRD 498 (582)
T ss_pred HhC
Confidence 875
No 299
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=1.5e-18 Score=147.01 Aligned_cols=128 Identities=22% Similarity=0.255 Sum_probs=97.9
Q ss_pred cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccccccccc
Q psy310 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLT 117 (240)
Q Consensus 38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~lt 117 (240)
......+|+||||+|++||++||||+||||||||||+|+|. .+|++|+|.+.|.-..+ +.-.. .+.+.+|
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi-~~Pt~G~v~v~G~v~~l--i~lg~-------Gf~pelT 105 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI-YKPTSGKVKVTGKVAPL--IELGA-------GFDPELT 105 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc-cCCCCceEEEcceEehh--hhccc-------CCCcccc
Confidence 45567899999999999999999999999999999999997 56899999999965321 11112 2446789
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310 118 VEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 118 v~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
.+||+.+...+. ++..+..++.++++.+-.++.+.....+...|.++..|+..+.+..
T Consensus 106 GreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~ 163 (249)
T COG1134 106 GRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATH 163 (249)
T ss_pred hHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhh
Confidence 999998765432 3456667777777777777777777777777888887777666543
No 300
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.77 E-value=6.8e-18 Score=147.18 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=96.9
Q ss_pred CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHH
Q psy310 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVE 119 (240)
Q Consensus 40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~ 119 (240)
..+++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|. +++++|.+.+.+.+++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl-~~p~~G~I~~~g~----------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS-LSPTVGKVDRNGE----------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-cCCCceEEEECCE----------EeEEecccCCCCCCcHH
Confidence 456799999999999999999999999999999999997 5678999999884 24566776666778999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 120 EAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 120 e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+..... ..........+..+++..++.+.........+.++.+++.++++++..
T Consensus 104 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~ 161 (264)
T PRK13546 104 ENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVN 161 (264)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhC
Confidence 9887543221 122233344455566666666655556667888999999999999875
No 301
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.77 E-value=1e-18 Score=167.47 Aligned_cols=140 Identities=22% Similarity=0.264 Sum_probs=102.2
Q ss_pred ccCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhce
Q psy310 30 NTNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSC 104 (240)
Q Consensus 30 ~~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g 104 (240)
-.-+|+++.+++ +++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.+.. ...+++.++
T Consensus 339 i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW-DPQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred EEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHhhee
Confidence 345688888854 57999999999999999999999999999999999984 578999999998653 356678899
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh----------ccCCCCCchhhHHHHH
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC----------FLSGPWGTFESSVLLA 174 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 174 (240)
||+|++.++. .|++||+.+.. ...+.+. +.++++..++.+.... .-...+++++|++.++
T Consensus 418 ~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~~~----i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialA 487 (574)
T PRK11160 418 VVSQRVHLFS-ATLRDNLLLAA-----PNASDEA----LIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIA 487 (574)
T ss_pred EEcccchhhc-ccHHHHhhcCC-----CccCHHH----HHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHH
Confidence 9999998875 59999987532 1122222 2223333333222111 1123667889999999
Q ss_pred HHHhcc
Q psy310 175 LAMYNR 180 (240)
Q Consensus 175 ~~~~~~ 180 (240)
+++...
T Consensus 488 Rall~~ 493 (574)
T PRK11160 488 RALLHD 493 (574)
T ss_pred HHHhcC
Confidence 987663
No 302
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.77 E-value=6.4e-19 Score=172.66 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=101.3
Q ss_pred cCCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhce
Q psy310 31 TNTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSC 104 (240)
Q Consensus 31 ~~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g 104 (240)
.-+|+...|++ +++|+++||+|++||+++|+||||||||||+++|.|++ +|.+|+|.++|.+.. ...+++.++
T Consensus 480 ~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~ 558 (711)
T TIGR00958 480 EFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-QPTGGQVLLDGVPLVQYDHHYLHRQVA 558 (711)
T ss_pred EEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHhhce
Confidence 44678888764 57999999999999999999999999999999999985 578999999998753 355778999
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-----------hhccCCCCCchhhHHHH
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-----------RCFLSGPWGTFESSVLL 173 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 173 (240)
||+|++.++. .|++||+.+.. ...++++..+.++ ..++.+.. ...-...+++++|++.+
T Consensus 559 ~v~Q~~~lF~-gTIreNI~~g~-----~~~~~e~i~~al~----~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlal 628 (711)
T TIGR00958 559 LVGQEPVLFS-GSVRENIAYGL-----TDTPDEEIMAAAK----AANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAI 628 (711)
T ss_pred EEecCccccc-cCHHHHHhcCC-----CCCCHHHHHHHHH----HcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHH
Confidence 9999998875 69999997531 1122222222222 22221111 11112367789999999
Q ss_pred HHHHhcc
Q psy310 174 ALAMYNR 180 (240)
Q Consensus 174 ~~~~~~~ 180 (240)
++++++.
T Consensus 629 ARALl~~ 635 (711)
T TIGR00958 629 ARALVRK 635 (711)
T ss_pred HHHHhcC
Confidence 9998764
No 303
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.77 E-value=1.3e-18 Score=165.57 Aligned_cols=142 Identities=29% Similarity=0.358 Sum_probs=101.3
Q ss_pred CCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 32 NTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
-+|+.+.+++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+.. ....++.++|+
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 397 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI-WPPTSGSVRLDGADLKQWDRETFGKHIGYL 397 (544)
T ss_pred EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEehhhCCHHHHhhheEEe
Confidence 3577777753 6899999999999999999999999999999999998 4578999999998653 34567889999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHH-----HHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV-----RTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~-----~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++.+++. |++||+.+.. ...+.+...+.+ .+.++.+ +++..........+++++|++.+++++..
T Consensus 398 ~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 398 PQDVELFPG-TVAENIARFG-----ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred cCCcccccc-cHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 999988865 9999986321 112222222211 1222222 11221122233467889999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 472 ~ 472 (544)
T TIGR01842 472 D 472 (544)
T ss_pred C
Confidence 5
No 304
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.5e-18 Score=161.29 Aligned_cols=137 Identities=16% Similarity=0.276 Sum_probs=103.6
Q ss_pred eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEccccc---cccc
Q psy310 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQ---LHAN 115 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q~~~---~~~~ 115 (240)
.+|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|++... ...+..++|++|++. +++.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA-TRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC-CcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 489999999999999999999999999999999997 56789999999976531 123467899999974 7788
Q ss_pred ccHHHHHHHHHHHhc-CCC--ccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 116 LTVEEAMNVATALKL-GKD--LTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 116 ltv~e~l~~~~~~~~-~~~--l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+++.+...... ... ......++.++++++.+++. +.....+...|+++++++.+++++...
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~ 414 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSED 414 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccC
Confidence 999998875321110 000 11222234567788888874 455666777899999999999999865
No 305
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.9e-18 Score=162.82 Aligned_cols=133 Identities=22% Similarity=0.242 Sum_probs=104.7
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~ 110 (240)
.-.|+.+.|+++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.+++. ..++|++|++
T Consensus 321 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-~~p~~G~i~~~~~--------~~i~~~~q~~ 391 (530)
T PRK15064 321 EVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE-LEPDSGTVKWSEN--------ANIGYYAQDH 391 (530)
T ss_pred EEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECCc--------eEEEEEcccc
Confidence 456788889888999999999999999999999999999999999997 5678999999873 4589999987
Q ss_pred c--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 Q--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
. +...+++.+++... . ... ...+.++.++..+++. +.........|+++++++.+++++...
T Consensus 392 ~~~~~~~~t~~~~~~~~---~-~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 456 (530)
T PRK15064 392 AYDFENDLTLFDWMSQW---R-QEG----DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQK 456 (530)
T ss_pred cccCCCCCcHHHHHHHh---c-cCC----ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcC
Confidence 4 45568998876531 1 111 1123456677777763 455666777899999999999999874
No 306
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.76 E-value=1.8e-18 Score=166.11 Aligned_cols=143 Identities=22% Similarity=0.286 Sum_probs=101.9
Q ss_pred cCCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 31 TNTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 31 ~~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
.-+|+...+++ +++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+.. ...+++.++||
T Consensus 336 ~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 414 (588)
T PRK13657 336 EFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-DPQSGRILIDGTDIRTVTRASLRRNIAVV 414 (588)
T ss_pred EEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 34577777754 67999999999999999999999999999999999984 578999999998653 34667899999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++.++. .|++||+.+.. +...+++....++.+ +..+ +.+......-...|++++|++.+++++++
T Consensus 415 ~Q~~~lf~-~Ti~~Ni~~~~-----~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~ 488 (588)
T PRK13657 415 FQDAGLFN-RSIEDNIRVGR-----PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK 488 (588)
T ss_pred ecCccccc-ccHHHHHhcCC-----CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 99998875 59999997531 122233322222221 1111 11111111112367889999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 489 ~ 489 (588)
T PRK13657 489 D 489 (588)
T ss_pred C
Confidence 5
No 307
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.76 E-value=3.9e-18 Score=162.92 Aligned_cols=136 Identities=24% Similarity=0.273 Sum_probs=104.8
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~ 110 (240)
.-.|+++.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.+++ . ..++|++|++
T Consensus 326 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-~~p~~G~i~~~~-~-------~~i~~v~q~~ 396 (556)
T PRK11819 326 EAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ-EQPDSGTIKIGE-T-------VKLAYVDQSR 396 (556)
T ss_pred EEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECC-c-------eEEEEEeCch
Confidence 356788888888999999999999999999999999999999999997 567899999843 2 1489999996
Q ss_pred -cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 -QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 -~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++.+|+.+++.+..... ..... ...++.++..+++.. .....+...|+++++++.+++++...
T Consensus 397 ~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~ 463 (556)
T PRK11819 397 DALDPNKTVWEEISGGLDII---KVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQG 463 (556)
T ss_pred hhcCCCCCHHHHHHhhcccc---ccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 6778899999987642111 11111 112345677777753 34556677899999999999998764
No 308
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.76 E-value=7.4e-18 Score=159.45 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=101.1
Q ss_pred eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch----hhhhhceEEcccc---ccccc
Q psy310 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS----QFRKLSCYIMQDN---QLHAN 115 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~----~~~~~~g~v~Q~~---~~~~~ 115 (240)
.+|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.++... ..+..++|++|++ .+++.
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGL-RPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-CCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 369999999999999999999999999999999997 567899999999765321 1234689999985 36777
Q ss_pred ccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 116 LTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 116 ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+++.................++.++.++..+++. ......+...|++++|++.+++++...
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~ 421 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEAS 421 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhC
Confidence 88988875321110000011122234566778888875 556666778899999999999999865
No 309
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=5.7e-18 Score=137.35 Aligned_cols=75 Identities=32% Similarity=0.443 Sum_probs=64.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q 108 (240)
.|+++.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+... ...++.++|++|
T Consensus 4 ~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q 82 (163)
T cd03216 4 RGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL-YKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ 82 (163)
T ss_pred EEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe
Confidence 4678888888999999999999999999999999999999999997 56789999999976532 123456888888
No 310
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.76 E-value=1.4e-18 Score=169.86 Aligned_cols=142 Identities=26% Similarity=0.274 Sum_probs=100.7
Q ss_pred CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
-+|+...|+ .+++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+.. ...+++.++||
T Consensus 466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~l~~~~~~~lr~~i~~v 544 (694)
T TIGR03375 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-QPTEGSVLLDGVDIRQIDPADLRRNIGYV 544 (694)
T ss_pred EEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHhccEEE
Confidence 357777775 357999999999999999999999999999999999985 578999999998753 45678899999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++.++. .|++||+.+.. ...+.++..+.++.+ +..+ +.+......-...|++++|++.+++++..
T Consensus 545 ~Q~~~lf~-~TI~eNi~~~~-----~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 545 PQDPRLFY-GTLRDNIALGA-----PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred CCChhhhh-hhHHHHHhCCC-----CCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 99998876 59999997531 112233322222221 1110 01110011112367788999999998876
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 619 ~ 619 (694)
T TIGR03375 619 D 619 (694)
T ss_pred C
Confidence 4
No 311
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.75 E-value=7.4e-18 Score=160.85 Aligned_cols=136 Identities=26% Similarity=0.300 Sum_probs=104.8
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~ 110 (240)
.-.|+++.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.+++ . ..++|++|++
T Consensus 324 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-~~p~~G~i~~~~-~-------~~i~~v~q~~ 394 (552)
T TIGR03719 324 EAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ-EQPDSGTIKIGE-T-------VKLAYVDQSR 394 (552)
T ss_pred EEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-CCCCCeEEEECC-c-------eEEEEEeCCc
Confidence 456888899888999999999999999999999999999999999997 567899999843 2 1489999996
Q ss_pred -cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 -QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 -~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++.+++.+++.+..... ..... ...++.++..+++.. .....+...|+++++++.+++++...
T Consensus 395 ~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~ 461 (552)
T TIGR03719 395 DALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSG 461 (552)
T ss_pred cccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhC
Confidence 4777889999987642111 11111 112345677777753 34556677899999999999998765
No 312
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.75 E-value=1.8e-17 Score=155.45 Aligned_cols=137 Identities=22% Similarity=0.291 Sum_probs=103.3
Q ss_pred ccCCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEE
Q psy310 30 NTNTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYI 106 (240)
Q Consensus 30 ~~~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v 106 (240)
-.-+|+.+.++. +++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+. ++
T Consensus 22 L~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL-l~P~sGeI~I~G~~~----------~i 90 (549)
T PRK13545 22 DKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV-TMPNKGTVDIKGSAA----------LI 90 (549)
T ss_pred eEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC-CCCCceEEEECCEee----------eE
Confidence 345667777776 4799999999999999999999999999999999997 567899999998642 12
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+.+.+.+.+|+.+++.+..... ........+.+..+++.+++.+.....+...++++++++.+++++...
T Consensus 91 ~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~ 161 (549)
T PRK13545 91 AISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHIN 161 (549)
T ss_pred EeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhC
Confidence 22334556689999987643221 122333344566677777877666666777899999999999999875
No 313
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.75 E-value=9.4e-18 Score=136.96 Aligned_cols=135 Identities=27% Similarity=0.331 Sum_probs=100.4
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchh---hhhhceEEcccccc--cccc
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ---FRKLSCYIMQDNQL--HANL 116 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~---~~~~~g~v~Q~~~~--~~~l 116 (240)
..+++.|||++.+|+.+++||.||||||||.|+|+|+ .+|.+|+|.++++.....+ ..+.+-++||||.- .+.+
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm-i~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl 104 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM-IEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRL 104 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc-cCCCCceEEECCccccccchHhhhhheeeeecCCccccChhh
Confidence 3589999999999999999999999999999999997 6689999999999875433 23678999999864 3444
Q ss_pred cHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc-chhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 117 TVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT-NHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 117 tv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
.+.+.+... +.+...+....+.+.+-+-+..+++ +++...++.-.+.+++|++.+++++..
T Consensus 105 ~iGqiLd~P--L~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL 166 (267)
T COG4167 105 RIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALIL 166 (267)
T ss_pred hhhhHhcch--hhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhc
Confidence 445544443 3333455666667777777777764 455555556666777888888777643
No 314
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.75 E-value=4e-18 Score=163.72 Aligned_cols=142 Identities=23% Similarity=0.268 Sum_probs=102.0
Q ss_pred CCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 32 NTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
-+|+.+.+++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+.. ...+++.++|++
T Consensus 337 ~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 415 (585)
T TIGR01192 337 FRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV-YDPTVGQILIDGIDINTVTRESLRKSIATVF 415 (585)
T ss_pred EEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC-CCCCCCEEEECCEEhhhCCHHHHHhheEEEc
Confidence 4688888865 5799999999999999999999999999999999998 5578999999997653 345678899999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhc-C-CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYR-S-DTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.++. .|++||+.+.. .....++..+.++.. +.. + +............|++++|++.+++++...
T Consensus 416 q~~~lf~-~ti~~Ni~~~~-----~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 416 QDAGLFN-RSIRENIRLGR-----EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred cCCccCc-ccHHHHHhcCC-----CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9998875 69999987531 112222222222211 111 1 111111122234678899999999999875
No 315
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.75 E-value=2.6e-18 Score=164.39 Aligned_cols=143 Identities=22% Similarity=0.257 Sum_probs=98.7
Q ss_pred cCCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhce
Q psy310 31 TNTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSC 104 (240)
Q Consensus 31 ~~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g 104 (240)
.-+|+++.+.+ +++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+.. ...+++.++
T Consensus 339 ~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~i~ 417 (576)
T TIGR02204 339 EFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-DPQSGRILLDGVDLRQLDPAELRARMA 417 (576)
T ss_pred EEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHHhce
Confidence 34577777753 57999999999999999999999999999999999984 578999999997653 345678899
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHH
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
|++|++.++ ..|++||+.+.. +..+.+...+.++.+ +..+ +.+..........+++++|++.+++++
T Consensus 418 ~~~Q~~~lf-~~Ti~~Ni~~~~-----~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 418 LVPQDPVLF-AASVMENIRYGR-----PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred EEccCCccc-cccHHHHHhcCC-----CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 999999876 558999987521 111222222222211 1111 111111111123567889999999887
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
+..
T Consensus 492 ~~~ 494 (576)
T TIGR02204 492 LKD 494 (576)
T ss_pred HhC
Confidence 753
No 316
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.74 E-value=1.1e-17 Score=162.12 Aligned_cols=135 Identities=22% Similarity=0.302 Sum_probs=104.4
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc-
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN- 110 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~- 110 (240)
-.|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.+ |... .++|++|++
T Consensus 322 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-~~p~~G~i~~-~~~~-------~i~y~~q~~~ 392 (635)
T PRK11147 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ-LQADSGRIHC-GTKL-------EVAYFDQHRA 392 (635)
T ss_pred EeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCcEEEE-CCCc-------EEEEEeCccc
Confidence 46889999999999999999999999999999999999999999997 5678999998 4322 489999986
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+.+.+|+.+++.+... .. .... ....+..++..+++. +.....+...|+++++++.+++++...
T Consensus 393 ~l~~~~tv~e~l~~~~~-~~--~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~ 458 (635)
T PRK11147 393 ELDPEKTVMDNLAEGKQ-EV--MVNG--RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKP 458 (635)
T ss_pred ccCCCCCHHHHHHhhcc-cc--cccc--hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 47788899998875321 11 0111 123456677777764 344555667899999999999998865
No 317
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.74 E-value=1.8e-17 Score=172.12 Aligned_cols=141 Identities=26% Similarity=0.391 Sum_probs=108.4
Q ss_pred CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC---CCCccEEEECCccCCc--hhhhhhceEEcccccccc
Q psy310 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT---SGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHA 114 (240)
Q Consensus 40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~---~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~~~~~ 114 (240)
..+++|+++|+.|++||+++|+|||||||||||++|+|+.. .+.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 45789999999999999999999999999999999999742 4579999999986531 123456899999999999
Q ss_pred cccHHHHHHHHHHHhcCC----CccHHHH-HHHHHHhhhcCCcchhhhh-----ccCCCCCchhhHHHHHHHHhcc
Q psy310 115 NLTVEEAMNVATALKLGK----DLTKAAR-KDVVRTLFYRSDTNHAQRC-----FLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 115 ~ltv~e~l~~~~~~~~~~----~l~~~~~-~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+||+|++.++..++... ...+.+. +..++.+++.+++.+..+. ...+.++++++++.+++++...
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~ 227 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGG 227 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhC
Confidence 999999999876543221 1223332 2334557777787765433 3467899999999999999875
No 318
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.74 E-value=2.9e-18 Score=163.77 Aligned_cols=140 Identities=21% Similarity=0.264 Sum_probs=100.4
Q ss_pred cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceE
Q psy310 31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCY 105 (240)
Q Consensus 31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~ 105 (240)
.-+|++..+.+ +++|+++||+|++||+++|+|+||||||||+++|+|+ ..|.+|+|.++|.+. ....+++.++|
T Consensus 332 ~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl-~~~~~G~I~i~g~~i~~~~~~~~~~~i~~ 410 (571)
T TIGR02203 332 EFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF-YEPDSGQILLDGHDLADYTLASLRRQVAL 410 (571)
T ss_pred EEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc-cCCCCCeEEECCEeHHhcCHHHHHhhceE
Confidence 34577777653 6799999999999999999999999999999999998 457899999999765 33566788999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh-----------ccCCCCCchhhHHHHH
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC-----------FLSGPWGTFESSVLLA 174 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 174 (240)
++|++.++. .|++||+.+.. .+..++.+..+. ++..++.+.... .-...|++++|++.++
T Consensus 411 v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~i~~~----l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLA 481 (571)
T TIGR02203 411 VSQDVVLFN-DTIANNIAYGR----TEQADRAEIERA----LAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA 481 (571)
T ss_pred EccCccccc-ccHHHHHhcCC----CCCCCHHHHHHH----HHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence 999998774 59999987531 112233332332 222222211111 1123678899999999
Q ss_pred HHHhcc
Q psy310 175 LAMYNR 180 (240)
Q Consensus 175 ~~~~~~ 180 (240)
++++..
T Consensus 482 Rall~~ 487 (571)
T TIGR02203 482 RALLKD 487 (571)
T ss_pred HHHhcC
Confidence 988763
No 319
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.74 E-value=2.6e-18 Score=178.73 Aligned_cols=143 Identities=22% Similarity=0.262 Sum_probs=103.3
Q ss_pred CCCceecCC---CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC---------------------------
Q psy310 32 NTNNNCEPN---EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS--------------------------- 81 (240)
Q Consensus 32 ~~~~~~~~~---~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--------------------------- 81 (240)
-+|++.+|. ++++|+++||+|++|+++|||||||||||||+++|.|++.+
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 368888885 35799999999999999999999999999999999999775
Q ss_pred --------------------------CCccEEEECCccC---CchhhhhhceEEcccccccccccHHHHHHHHHHHhcCC
Q psy310 82 --------------------------GTEGSITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 132 (240)
Q Consensus 82 --------------------------~~~G~V~v~g~~~---~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~ 132 (240)
|.+|+|.++|.++ ....+++.++||+|+|.++ ..|++||+.+.. .
T Consensus 1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~-----~ 1321 (1466)
T PTZ00265 1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGK-----E 1321 (1466)
T ss_pred cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCC-----C
Confidence 2689999999876 4567889999999999887 679999998641 1
Q ss_pred CccHHHHHHHHHHhhh--cC-Ccchhhhhc----cCCCCCchhhHHHHHHHHhcc
Q psy310 133 DLTKAARKDVVRTLFY--RS-DTNHAQRCF----LSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 133 ~l~~~~~~~~~~~l~~--~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 180 (240)
....++..+.++..-. .+ .+++..+.. -...|++++||+.+|+++...
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~ 1376 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLRE 1376 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcC
Confidence 2233333333222110 00 011111111 123678899999999998764
No 320
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.74 E-value=4.5e-18 Score=166.30 Aligned_cols=142 Identities=18% Similarity=0.249 Sum_probs=101.2
Q ss_pred CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
-+|+...|+ ++++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+.. ...+++.++||
T Consensus 458 ~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~p~~G~I~idg~~i~~~~~~~~r~~i~~v 536 (694)
T TIGR01846 458 FENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQHGQVLVDGVDLAIADPAWLRRQMGVV 536 (694)
T ss_pred EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEehhhCCHHHHHHhCeEE
Confidence 357777774 357999999999999999999999999999999999984 578999999998753 35678889999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHH-----hhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRT-----LFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~-----l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++.++. .|++||+.+.. ...+.....+.++. .+..+ +++..........|++++|++.+++++..
T Consensus 537 ~q~~~lf~-~ti~eNi~~~~-----~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 537 LQENVLFS-RSIRDNIALCN-----PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred ccCCeehh-hhHHHHHhcCC-----CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 99998875 59999987521 12222222222221 11111 11111111223467889999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 611 ~ 611 (694)
T TIGR01846 611 N 611 (694)
T ss_pred C
Confidence 5
No 321
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.74 E-value=1.4e-17 Score=153.10 Aligned_cols=163 Identities=28% Similarity=0.371 Sum_probs=113.1
Q ss_pred CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccccccccccc
Q psy310 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLT 117 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~~~~~~~lt 117 (240)
.+++++++||++.+||.+|||||||||||||.|+|.|.+ +|.+|.|+++|-+.. ..++.+++||++|+-.+++ -|
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GT 425 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GT 425 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCcEEecchhhhcCCHHHhccccCcCcccceecC-Cc
Confidence 468999999999999999999999999999999999974 578999999998764 3456789999999988875 58
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHH-----HhhhcCCcchhhhhc----cCCCCCchhhHHHHHHHHhcccccceeec
Q psy310 118 VEEAMNVATALKLGKDLTKAARKDVVR-----TLFYRSDTNHAQRCF----LSGPWGTFESSVLLALAMYNRIHEKTILK 188 (240)
Q Consensus 118 v~e~l~~~~~~~~~~~l~~~~~~~~~~-----~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 188 (240)
+.||+.- +..+.+.+..-+.++ ++..+ ++.-.+.. -...|++++|++.+++++|.. ..-.+||
T Consensus 426 IaeNIaR-----f~~~~d~~kIieAA~lAgvHelIl~--lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~-P~lvVLD 497 (580)
T COG4618 426 IAENIAR-----FGEEADPEKVIEAARLAGVHELILR--LPQGYDTRIGEGGATLSGGQRQRIALARALYGD-PFLVVLD 497 (580)
T ss_pred HHHHHHh-----ccccCCHHHHHHHHHHcChHHHHHh--CcCCccCccCCCCCCCCchHHHHHHHHHHHcCC-CcEEEec
Confidence 8998852 222223332222222 11111 11111111 123577899999999999875 2234555
Q ss_pred cceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310 189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224 (240)
Q Consensus 189 ~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~ 224 (240)
..+-.+.. .|---|.++|...|.++
T Consensus 498 EPNsNLD~-----------~GE~AL~~Ai~~~k~rG 522 (580)
T COG4618 498 EPNSNLDS-----------EGEAALAAAILAAKARG 522 (580)
T ss_pred CCCCCcch-----------hHHHHHHHHHHHHHHcC
Confidence 55544433 26667888888876665
No 322
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=7.1e-18 Score=140.57 Aligned_cols=141 Identities=26% Similarity=0.351 Sum_probs=102.4
Q ss_pred CCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEccccc--cc
Q psy310 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQ--LH 113 (240)
Q Consensus 39 ~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q~~~--~~ 113 (240)
..++++|+++|++|.+|+++.|||.|||||||||++|+|. ..+++|+|.++|.++.- .....+++.|||||. ..
T Consensus 16 ~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~-l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD-LKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc-cccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 3467899999999999999999999999999999999996 67899999999998743 334467889999986 45
Q ss_pred ccccHHHHHHHHHHHhcCCCccH---HHHHHHHHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 114 ANLTVEEAMNVATALKLGKDLTK---AARKDVVRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 114 ~~ltv~e~l~~~~~~~~~~~l~~---~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+|++||+.++......+++.. ..+.+..+..+..+ ++.......+...|++++|.+.+.++..+.
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~ 166 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHP 166 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCC
Confidence 78999999998765433333322 12222333333332 344444445555788888888877776553
No 323
>KOG0065|consensus
Probab=99.74 E-value=2.3e-18 Score=172.19 Aligned_cols=181 Identities=29% Similarity=0.494 Sum_probs=140.0
Q ss_pred CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CCCccEEEECCccCCchhhhhhceEEcccccccccccH
Q psy310 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTV 118 (240)
Q Consensus 40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv 118 (240)
+.+.+|++|+--+.||-.+||+|+|||||||||++|+|... +..+|+|.|+|.+.....+++.+|||.|++.+.+.+||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 66889999999999999999999999999999999999633 34589999999988767789999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCC-------------------------------CCCch
Q psy310 119 EEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSG-------------------------------PWGTF 167 (240)
Q Consensus 119 ~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------------------~~~~~ 167 (240)
+|.+++.+.++++..++..++.+.++++++.+++.+..+..+.. |..+.
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 99999999999888888877778888888888876655443322 22221
Q ss_pred h-hHHHHHHHHhc-----------ccc--cceeeccce--eEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 168 E-SSVLLALAMYN-----------RIH--EKTILKSVS--GRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 168 ~-~~~~~~~~~~~-----------~~~--~~~il~~vs--l~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
. +...+.+..++ .++ ...|++..| |-+++|..+...|+-|-+-+||+++....
T Consensus 962 DsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~ 1030 (1391)
T KOG0065|consen 962 DSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESI 1030 (1391)
T ss_pred cHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhc
Confidence 1 11111111111 111 223455555 56899999999999999999999998854
No 324
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.2e-17 Score=155.44 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=101.6
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q 108 (240)
+|+.+. .+.+|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.++.. ...++.++|++|
T Consensus 254 ~~l~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q 330 (491)
T PRK10982 254 RNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI-REKSAGTITLHGKKINNHNANEAINHGFALVTE 330 (491)
T ss_pred eCcccc--cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC-CcCCccEEEECCEECCCCCHHHHHHCCCEEcCC
Confidence 345544 24699999999999999999999999999999999997 56789999999976532 112455899999
Q ss_pred ccc---ccccccHHHHHHHHHH-HhcC-CC-ccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQ---LHANLTVEEAMNVATA-LKLG-KD-LTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~---~~~~ltv~e~l~~~~~-~~~~-~~-l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++. +++.+++.++...... .... .. ......++.++.+++.+++. ......+...|+++++++.+++++...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 409 (491)
T PRK10982 331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQ 409 (491)
T ss_pred chhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcC
Confidence 864 5666777665322111 0000 01 12222344556677777664 344566677899999999999999765
No 325
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.2e-18 Score=157.86 Aligned_cols=137 Identities=28% Similarity=0.345 Sum_probs=101.5
Q ss_pred CCceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEEcc
Q psy310 33 TNNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v~Q 108 (240)
.|+.+.+++. ++++|+||++++|++++|||+||||||||+.+|+|+ .+|++|+|.++|.+. ....+++.+++|+|
T Consensus 324 ~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~-~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q 402 (559)
T COG4988 324 ENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF-LAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402 (559)
T ss_pred cceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc-CCCCCceEEECCccccccCHHHHHhHeeeeCC
Confidence 4677777665 999999999999999999999999999999999998 567999999999765 34567899999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhh----------hccCCCCCchhhHHHHHHHHh
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR----------CFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 178 (240)
+|.+++ -|++||+.+... ...++.. .+++++.++.+.-+ .--.+.|+++.||+.+++++.
T Consensus 403 ~p~lf~-gTireNi~l~~~-----~~s~e~i----~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll 472 (559)
T COG4988 403 NPYLFA-GTIRENILLARP-----DASDEEI----IAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALL 472 (559)
T ss_pred CCcccc-ccHHHHhhccCC-----cCCHHHH----HHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhc
Confidence 998765 589999976321 1222222 22333333222211 112336778899999999987
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 473 ~~ 474 (559)
T COG4988 473 SP 474 (559)
T ss_pred CC
Confidence 64
No 326
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.74 E-value=5.1e-18 Score=162.48 Aligned_cols=142 Identities=22% Similarity=0.237 Sum_probs=99.2
Q ss_pred CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
-+|+...+. ++++|+++||+|++||+++|+||||||||||+++|+|++ +|.+|+|.++|.+.. ...+++.++|+
T Consensus 316 ~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 394 (569)
T PRK10789 316 VNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDIRFHDIPLTKLQLDSWRSRLAVV 394 (569)
T ss_pred EEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEHhhCCHHHHHhheEEE
Confidence 345556554 367999999999999999999999999999999999984 578999999998652 34567889999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++.++. .|++||+.+.. .....+...+.++.. ...+ +............|++++|++.+++++..
T Consensus 395 ~q~~~lf~-~ti~~Ni~~~~-----~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~ 468 (569)
T PRK10789 395 SQTPFLFS-DTVANNIALGR-----PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL 468 (569)
T ss_pred ccCCeecc-ccHHHHHhcCC-----CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 99998886 49999987531 112222222222211 0100 11111111123467889999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 469 ~ 469 (569)
T PRK10789 469 N 469 (569)
T ss_pred C
Confidence 5
No 327
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.73 E-value=3.3e-17 Score=141.47 Aligned_cols=120 Identities=20% Similarity=0.180 Sum_probs=90.0
Q ss_pred eeeeeeEEEEe-----CCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccccccccc
Q psy310 43 TILKSVSGRLR-----SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLT 117 (240)
Q Consensus 43 ~~L~~vsl~I~-----~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~lt 117 (240)
..+++++|++. +||+++|+||||||||||+++|+|+ .+|.+|+|.++|. .++|++|++......+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~-~~p~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGV-LKPDEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCC-CcCCCCeEEECCc---------eEEEecccccCCCCCC
Confidence 35666666665 7999999999999999999999997 5678999999874 4789999987777889
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 118 VEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 118 v~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+.|++....... . .. ...+.++++.+++.+.........|++++|++.+++++..
T Consensus 78 v~e~l~~~~~~~-~---~~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~ 132 (246)
T cd03237 78 VRDLLSSITKDF-Y---TH---PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSK 132 (246)
T ss_pred HHHHHHHHhhhc-c---cc---HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999876432111 0 00 1224456666777666666666788899999998887765
No 328
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.73 E-value=2.5e-17 Score=139.20 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=86.5
Q ss_pred eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEE-ECCccCCchhhhhhceEEcccccccccccHHHH
Q psy310 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSIT-INGHERNLSQFRKLSCYIMQDNQLHANLTVEEA 121 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~-v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~ 121 (240)
.+|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|. +++... .+.+.+.+++.+++.|+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-~~~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL-DAPDEGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-ccCCCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 379999999999999999999999999999999997 567899997 666432 12345667788999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 122 MNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 122 l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+..... ........+ .+....++....+..+...+.++++++.+++++...
T Consensus 70 l~~~~~~~---~~~~~~~~~---~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~ 122 (213)
T PRK15177 70 ARMMASLY---GLDGDEFSH---FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLP 122 (213)
T ss_pred HHHHHHHc---CCCHHHHHH---HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcC
Confidence 98754322 112222122 222333444444445566788899999999998765
No 329
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.73 E-value=2.3e-17 Score=140.18 Aligned_cols=128 Identities=23% Similarity=0.292 Sum_probs=94.1
Q ss_pred EEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccc--cccHHHHHHHHHH
Q psy310 50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHA--NLTVEEAMNVATA 127 (240)
Q Consensus 50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~--~ltv~e~l~~~~~ 127 (240)
|+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+.. ..++.++|++|++.+.. ..++.+++.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGL-IPPAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 57899999999999999999999999997 5678999999997642 34567999999986643 4688888765321
Q ss_pred HhcCC-CccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 128 LKLGK-DLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 128 ~~~~~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
..... ........+.+..+++.+++.+.....+...+.++++++.+++++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 131 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATR 131 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 10000 001112234466677777777666666677889999999999999875
No 330
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.73 E-value=3.5e-17 Score=144.01 Aligned_cols=129 Identities=22% Similarity=0.248 Sum_probs=88.2
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~ 111 (240)
-+|+.+. .+++|+++||+|.+||+++|+|+|||||||||++|+|+ .+|.+|+|.++| .++|++|++.
T Consensus 42 i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl-~~p~~G~I~i~g----------~i~yv~q~~~ 108 (282)
T cd03291 42 FSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE-LEPSEGKIKHSG----------RISFSSQFSW 108 (282)
T ss_pred EEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECC----------EEEEEeCccc
Confidence 3455553 46799999999999999999999999999999999997 567899999987 2799999988
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHH-----HhhhcCCcch--hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVR-----TLFYRSDTNH--AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~-----~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++ .++.+++.+... . ........++ ..+..+.... .........++++++++.+++++...
T Consensus 109 l~~-~tv~enl~~~~~--~----~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 177 (282)
T cd03291 109 IMP-GTIKENIIFGVS--Y----DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD 177 (282)
T ss_pred ccc-cCHHHHhhcccc--c----CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 776 489998765211 0 1111111111 1111110000 01112235678889999999998864
No 331
>KOG0055|consensus
Probab=99.72 E-value=1.1e-17 Score=167.13 Aligned_cols=143 Identities=24% Similarity=0.322 Sum_probs=103.0
Q ss_pred cCCCceecCCCce---eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---Cchhhhhhce
Q psy310 31 TNTNNNCEPNEKT---ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSC 104 (240)
Q Consensus 31 ~~~~~~~~~~~~~---~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g 104 (240)
.-+|++..|..++ +|+++||.|++|+.|+|||||||||||++++|.++|. |.+|+|.++|.++ ....++..+|
T Consensus 352 ef~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd-P~~G~V~idG~di~~~~~~~lr~~ig 430 (1228)
T KOG0055|consen 352 EFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD-PTSGEVLIDGEDIRNLNLKWLRSQIG 430 (1228)
T ss_pred EEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCceEEEcCccchhcchHHHHhhcC
Confidence 3467888888775 8999999999999999999999999999999999865 6899999999876 3567889999
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhc---CCcchhhhhc----cCCCCCchhhHHHHHHHH
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYR---SDTNHAQRCF----LSGPWGTFESSVLLALAM 177 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 177 (240)
.|+|+|.++ ..|++||+.+.. ++..+....+.++..-.. ..++...+.. -...+++++||+.+|+++
T Consensus 431 lV~QePvlF-~~tI~eNI~~G~-----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 431 LVSQEPVLF-ATTIRENIRYGK-----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARAL 504 (1228)
T ss_pred eeeechhhh-cccHHHHHhcCC-----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHH
Confidence 999999665 679999998642 121222222222211100 0011111111 012678899999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
...
T Consensus 505 v~~ 507 (1228)
T KOG0055|consen 505 VRN 507 (1228)
T ss_pred HhC
Confidence 875
No 332
>PLN03140 ABC transporter G family member; Provisional
Probab=99.72 E-value=2.8e-17 Score=170.75 Aligned_cols=139 Identities=25% Similarity=0.312 Sum_probs=105.8
Q ss_pred CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC---ccEEEECCccCCchhhhhhceEEccccccccccc
Q psy310 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT---EGSITINGHERNLSQFRKLSCYIMQDNQLHANLT 117 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~---~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~lt 117 (240)
.+.+|+++|+.|++||+++|+|||||||||||++|+|++ .+. +|+|.++|++......++.++||+|++.+++.+|
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l-~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL-DPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-CCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 578999999999999999999999999999999999974 455 8999999987633223567999999999999999
Q ss_pred HHHHHHHHHHHhcCC-------CccHHHH------------------------HHHHHHhhhcCCcchhh-----hhccC
Q psy310 118 VEEAMNVATALKLGK-------DLTKAAR------------------------KDVVRTLFYRSDTNHAQ-----RCFLS 161 (240)
Q Consensus 118 v~e~l~~~~~~~~~~-------~l~~~~~------------------------~~~~~~l~~~~~~~~~~-----~~~~~ 161 (240)
|+|++.++..++... ...+.+. ...++.+++.+++.+.. .....
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999875443110 0111110 11245567777776643 33456
Q ss_pred CCCCchhhHHHHHHHHhcc
Q psy310 162 GPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~ 180 (240)
+.++++++++.+++++...
T Consensus 336 glSGGerkRVsia~aL~~~ 354 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGP 354 (1470)
T ss_pred CCCcccceeeeehhhhcCC
Confidence 7899999999999988775
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.5e-17 Score=157.91 Aligned_cols=132 Identities=21% Similarity=0.240 Sum_probs=99.4
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~ 110 (240)
.-.|+++.|+++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.+++. ..++|++|++
T Consensus 314 ~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-~~p~~G~i~~~~~--------~~igy~~Q~~ 384 (638)
T PRK10636 314 KMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE-LAPVSGEIGLAKG--------IKLGYFAQHQ 384 (638)
T ss_pred EEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCeEEECCC--------EEEEEecCcc
Confidence 346888999999999999999999999999999999999999999997 5688999998641 2589999974
Q ss_pred c--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 Q--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
. +....++.+.+.. ... ......++.++..+++.. .....+...|+++++++.+++++...
T Consensus 385 ~~~l~~~~~~~~~~~~-----~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 385 LEFLRADESPLQHLAR-----LAP----QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred hhhCCccchHHHHHHH-----hCc----hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 2 3334455544321 111 112344667777777753 44556677899999999999999865
No 334
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.72 E-value=2.8e-17 Score=159.82 Aligned_cols=136 Identities=18% Similarity=0.253 Sum_probs=99.0
Q ss_pred cCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccc
Q psy310 31 TNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQD 109 (240)
Q Consensus 31 ~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~ 109 (240)
.-+|+++.+. ++++|+++||+|++||+++|+||||||||||+++|+|+ .++.+|+|.+++ ++.++||+|+
T Consensus 453 ~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl-~~~~~G~i~~~~--------~~~i~~v~Q~ 523 (659)
T TIGR00954 453 KFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL-WPVYGGRLTKPA--------KGKLFYVPQR 523 (659)
T ss_pred EEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCeEeecC--------CCcEEEECCC
Confidence 4567888774 56899999999999999999999999999999999998 457889998754 4568999999
Q ss_pred ccccccccHHHHHHHHHHHh-c-CCCccHHHHHHHHHHhhhcCCcchhhhh---------ccCCCCCchhhHHHHHHHHh
Q psy310 110 NQLHANLTVEEAMNVATALK-L-GKDLTKAARKDVVRTLFYRSDTNHAQRC---------FLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~-~-~~~l~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 178 (240)
+.++.. |++|++.+..... . ..... .+.+.++++.+++.+.... .....+++++|++.+++++.
T Consensus 524 ~~l~~~-tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~ 598 (659)
T TIGR00954 524 PYMTLG-TLRDQIIYPDSSEDMKRRGLS----DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFY 598 (659)
T ss_pred CCCCCc-CHHHHHhcCCChhhhhccCCC----HHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHH
Confidence 987766 9999987532110 0 01111 1223445555555443222 12357788999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 599 ~~ 600 (659)
T TIGR00954 599 HK 600 (659)
T ss_pred cC
Confidence 75
No 335
>PTZ00243 ABC transporter; Provisional
Probab=99.72 E-value=2.2e-17 Score=172.87 Aligned_cols=137 Identities=23% Similarity=0.229 Sum_probs=100.6
Q ss_pred CCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 32 NTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
-+|++..|.+ .++|+++||+|++||++||||++|||||||+++|.|++ .|.+|+|.++|.++. ...+|+.++||
T Consensus 1311 f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-~p~~G~I~IDG~di~~i~l~~LR~~I~iV 1389 (1560)
T PTZ00243 1311 FEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-EVCGGEIRVNGREIGAYGLRELRRQFSMI 1389 (1560)
T ss_pred EEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcccCCHHHHHhcceEE
Confidence 3566777654 46999999999999999999999999999999999985 578999999998763 56788999999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-------hhcc----CCCCCchhhHHHHHH
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-------RCFL----SGPWGTFESSVLLAL 175 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~ 175 (240)
+|+|.++.. |+++|+... ...+.++..+.++ ..++.+.. +..+ ...|++++|++.+++
T Consensus 1390 pQdp~LF~g-TIreNIdp~------~~~sdeeI~~Al~----~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLAR 1458 (1560)
T PTZ00243 1390 PQDPVLFDG-TVRQNVDPF------LEASSAEVWAALE----LVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458 (1560)
T ss_pred CCCCccccc-cHHHHhCcc------cCCCHHHHHHHHH----HCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHH
Confidence 999998864 999999631 1122333333332 22222111 1111 235678899999999
Q ss_pred HHhcc
Q psy310 176 AMYNR 180 (240)
Q Consensus 176 ~~~~~ 180 (240)
++.++
T Consensus 1459 ALL~~ 1463 (1560)
T PTZ00243 1459 ALLKK 1463 (1560)
T ss_pred HHhcC
Confidence 99864
No 336
>PLN03130 ABC transporter C family member; Provisional
Probab=99.72 E-value=1.8e-17 Score=173.79 Aligned_cols=142 Identities=22% Similarity=0.184 Sum_probs=101.1
Q ss_pred cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceE
Q psy310 31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCY 105 (240)
Q Consensus 31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~ 105 (240)
.-+|++.+|.. .++|+++||+|++||++||||++|||||||+++|.|++ .|.+|+|.++|.++ ....+|+.+++
T Consensus 1239 ~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1317 (1622)
T PLN03130 1239 KFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-ELERGRILIDGCDISKFGLMDLRKVLGI 1317 (1622)
T ss_pred EEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCEecccCCHHHHHhccEE
Confidence 34677777754 47999999999999999999999999999999999985 57899999999876 34678899999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
|+|+|.++.. |+++|+.... ...+++..+.++.. ...+ +++..-...-...+++++|++.+|+++.
T Consensus 1318 VpQdp~LF~G-TIreNLd~~~------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALL 1390 (1622)
T PLN03130 1318 IPQAPVLFSG-TVRFNLDPFN------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALL 1390 (1622)
T ss_pred ECCCCccccc-cHHHHhCcCC------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999998864 9999997421 11222222222221 1110 1111111111235678899999999887
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
+.
T Consensus 1391 r~ 1392 (1622)
T PLN03130 1391 RR 1392 (1622)
T ss_pred cC
Confidence 63
No 337
>PRK13409 putative ATPase RIL; Provisional
Probab=99.72 E-value=7.3e-17 Score=154.96 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=104.1
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~ 111 (240)
-.|+.+.+++. .|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++ ..++|++|++.
T Consensus 343 ~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl-~~p~~G~I~~~----------~~i~y~~Q~~~ 410 (590)
T PRK13409 343 YPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV-LKPDEGEVDPE----------LKISYKPQYIK 410 (590)
T ss_pred EcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEEe----------eeEEEeccccc
Confidence 45677777764 49999999999999999999999999999999997 56789999885 14899999988
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+...+|+.+++.+... .. .. ...++++++.+++.+.....+...|++++|++.+++++...
T Consensus 411 ~~~~~tv~e~l~~~~~-~~----~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 411 PDYDGTVEDLLRSITD-DL----GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred CCCCCcHHHHHHHHhh-hc----Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 8888999998875321 11 11 12356677888887777777888999999999999999875
No 338
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.72 E-value=3.2e-17 Score=156.31 Aligned_cols=134 Identities=22% Similarity=0.245 Sum_probs=95.4
Q ss_pred CCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 32 NTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
-+|+.+.|++ .++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.+.. ...+++.++||+
T Consensus 325 ~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 403 (547)
T PRK10522 325 LRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVTAEQPEDYRKLFSAVF 403 (547)
T ss_pred EEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCCCCHHHHhhheEEEe
Confidence 4577777754 57999999999999999999999999999999999984 578999999998764 345678899999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh---c--cCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC---F--LSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.++.. |+.++- ...+ .+.+.++++.+++...... . -...+++++|++.+++++...
T Consensus 404 q~~~lf~~-ti~~n~---------~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~ 467 (547)
T PRK10522 404 TDFHLFDQ-LLGPEG---------KPAN----PALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEE 467 (547)
T ss_pred cChhHHHH-hhcccc---------CchH----HHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99977653 444430 0111 1222333333333322111 0 124678899999999998874
No 339
>PLN03232 ABC transporter C family member; Provisional
Probab=99.72 E-value=1.5e-17 Score=173.85 Aligned_cols=137 Identities=20% Similarity=0.192 Sum_probs=100.7
Q ss_pred CCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEE
Q psy310 32 NTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v 106 (240)
-+|++.+|.. .++|+|+||+|++||++||||++|||||||+++|.|++ .|.+|+|.++|.++ ....+|+.++||
T Consensus 1237 f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~-~p~~G~I~IdG~di~~i~~~~lR~~i~iV 1315 (1495)
T PLN03232 1237 FEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV-ELEKGRIMIDDCDVAKFGLTDLRRVLSII 1315 (1495)
T ss_pred EEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCceEEECCEEhhhCCHHHHHhhcEEE
Confidence 4677877743 57999999999999999999999999999999999984 57899999999876 346778999999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-----------hhccCCCCCchhhHHHHHH
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-----------RCFLSGPWGTFESSVLLAL 175 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 175 (240)
+|+|.++.. |+++|+.... ..+.++..+.++ ..++.+.- ...-...|++++|++.+++
T Consensus 1316 pQdp~LF~g-TIr~NL~~~~------~~sdeei~~al~----~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLAR 1384 (1495)
T PLN03232 1316 PQSPVLFSG-TVRFNIDPFS------EHNDADLWEALE----RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLAR 1384 (1495)
T ss_pred CCCCeeeCc-cHHHHcCCCC------CCCHHHHHHHHH----HcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHH
Confidence 999998864 9999987421 122232222222 22221111 1111235678899999999
Q ss_pred HHhcc
Q psy310 176 AMYNR 180 (240)
Q Consensus 176 ~~~~~ 180 (240)
++.+.
T Consensus 1385 ALLr~ 1389 (1495)
T PLN03232 1385 ALLRR 1389 (1495)
T ss_pred HHHhC
Confidence 88763
No 340
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.6e-17 Score=141.83 Aligned_cols=123 Identities=24% Similarity=0.342 Sum_probs=103.0
Q ss_pred eeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC-------CchhhhhhceEEcccccccccccHH
Q psy310 47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER-------NLSQFRKLSCYIMQDNQLHANLTVE 119 (240)
Q Consensus 47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~-------~~~~~~~~~g~v~Q~~~~~~~ltv~ 119 (240)
+++|.++.--+++|.|+||||||||+++|+|+ ..|++|.|.++|+-. .....++.+||||||..+++++||+
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL-~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGL-TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhcc-CCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 57888877689999999999999999999997 668999999999743 2345678999999999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 120 EAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 120 e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
.|+++.... . .......+...+++.|...+++...+++++|++.+.+++..
T Consensus 95 gNL~YG~~~--~-------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt 145 (352)
T COG4148 95 GNLRYGMWK--S-------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLT 145 (352)
T ss_pred cchhhhhcc--c-------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhc
Confidence 999875321 1 23345567777889999999999999999999999998765
No 341
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.70 E-value=6.8e-17 Score=154.32 Aligned_cols=135 Identities=20% Similarity=0.279 Sum_probs=98.5
Q ss_pred CCCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhc
Q psy310 32 NTNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLS 103 (240)
Q Consensus 32 ~~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~ 103 (240)
-+|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ...+++.+
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~p~~G~i~~~g~~i~~~~~~~~~~~i 418 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-YIPQEGEILLDGAAVSADSRDDYRDLF 418 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHHHhhC
Confidence 4578888765 2599999999999999999999999999999999998 4578999999998763 34567889
Q ss_pred eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhc------cCCCCCchhhHHHHHHHH
Q psy310 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCF------LSGPWGTFESSVLLALAM 177 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 177 (240)
+||+|++.++.. ++.++.. .. ...+.+.++++..++.+..... ....|++++|++.+++++
T Consensus 419 ~~v~q~~~lf~~-ti~~n~~--------~~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal 485 (555)
T TIGR01194 419 SAIFADFHLFDD-LIGPDEG--------EH----ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW 485 (555)
T ss_pred cEEccChhhhhh-hhhcccc--------cc----hhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH
Confidence 999999987754 4554421 11 1122233444444444322221 134678899999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
...
T Consensus 486 l~~ 488 (555)
T TIGR01194 486 LED 488 (555)
T ss_pred HcC
Confidence 875
No 342
>KOG0059|consensus
Probab=99.70 E-value=1.3e-16 Score=159.47 Aligned_cols=144 Identities=24% Similarity=0.284 Sum_probs=124.4
Q ss_pred CCceecCCCce-eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEc
Q psy310 33 TNNNCEPNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~~-~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~ 107 (240)
.|..+.++.+. +++++||.|++||++|++|+|||||||++++|.|. .+|.+|++.+.|++... ...++.+||+|
T Consensus 568 ~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~-~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCP 646 (885)
T KOG0059|consen 568 NNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE-TKPTSGEALIKGHDITVSTDFQQVRKQLGYCP 646 (885)
T ss_pred cceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCC-ccCCcceEEEecCccccccchhhhhhhcccCC
Confidence 46677777777 99999999999999999999999999999999997 77899999999988743 23678899999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|+..+.+.+|.+|.+.+-.+++ ++......+.++.+++.+++.+.........+++.++++..+.++...
T Consensus 647 Q~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~ 716 (885)
T KOG0059|consen 647 QFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGD 716 (885)
T ss_pred chhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcC
Confidence 9999999999999998866554 455566677788899999999988888888899999999999998764
No 343
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.69 E-value=1.2e-16 Score=138.59 Aligned_cols=136 Identities=21% Similarity=0.203 Sum_probs=97.3
Q ss_pred CceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEE-----------ECCccCCch--hh
Q psy310 34 NNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSIT-----------INGHERNLS--QF 99 (240)
Q Consensus 34 ~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~-----------v~g~~~~~~--~~ 99 (240)
|+.+.|+.. .+|+++|+ |.+||+++|+|||||||||||++|+|+ .+|++|+|. ++|.+.... ..
T Consensus 5 ~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl-~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 5 EPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGK-LKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred CcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCC-cCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 566777664 59999995 999999999999999999999999998 567899996 666654211 11
Q ss_pred h---hhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHH
Q psy310 100 R---KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALA 176 (240)
Q Consensus 100 ~---~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (240)
+ ..++|++|+..+.+. ++.+++... +. .....+.+.++++.+++.+.........+.++++++.++++
T Consensus 83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~--l~------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 153 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPK-AVKGKVGEL--LK------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAA 153 (255)
T ss_pred hhcccceeeecchhccCch-HHHHHHHHH--hc------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 1 135788888776663 555555432 11 11223445667777777765555566678889999999999
Q ss_pred Hhcc
Q psy310 177 MYNR 180 (240)
Q Consensus 177 ~~~~ 180 (240)
++..
T Consensus 154 l~~~ 157 (255)
T cd03236 154 LARD 157 (255)
T ss_pred HHhC
Confidence 8865
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.69 E-value=1.6e-16 Score=126.36 Aligned_cols=67 Identities=31% Similarity=0.420 Sum_probs=59.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q 108 (240)
+|+.+.+++.++|+++||++++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|. ..++|++|
T Consensus 4 ~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~-~~~~~G~i~~~~~--------~~i~~~~~ 70 (144)
T cd03221 4 ENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE-LEPDEGIVTWGST--------VKIGYFEQ 70 (144)
T ss_pred EEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC-CCCCceEEEECCe--------EEEEEEcc
Confidence 4567777777899999999999999999999999999999999997 5678999999883 35788888
No 345
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=1.2e-16 Score=137.33 Aligned_cols=171 Identities=18% Similarity=0.164 Sum_probs=118.7
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEE-cccccccccccH
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYI-MQDNQLHANLTV 118 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v-~Q~~~~~~~ltv 118 (240)
.++++|+||+|++|+++|++|||||||||+||+|+|+ ..|.+|.|.++|.+.-. ..+-+.+++| .|..++.-.+.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl-l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL-LLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc-cccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 3489999999999999999999999999999999997 55789999999986421 2233455555 445555555556
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeecccee------
Q psy310 119 EEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSG------ 192 (240)
Q Consensus 119 ~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vsl------ 192 (240)
.+.+.+...++ .++...-+++...+.+.+++....+......|.+++.+..++.++.+.. ....|+.++.
T Consensus 116 ~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p-~VLfLDEpTvgLDV~a 191 (325)
T COG4586 116 LDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPP-KVLFLDEPTVGLDVNA 191 (325)
T ss_pred hhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCC-cEEEecCCccCcchhH
Confidence 66555544333 3445556666777777777776555555566777788888888877642 1112233321
Q ss_pred -----------EEeCCcEEEEEcCCCCCHHHHHHHH
Q psy310 193 -----------RLRSGELTAIMGPSGAGKSTLLNIL 217 (240)
Q Consensus 193 -----------~I~~Ge~valvG~NGsGKSTLlk~l 217 (240)
.-+++-.|.+.-++=++=++|-+-+
T Consensus 192 q~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv 227 (325)
T COG4586 192 QANIREFLKEYNEERQATVLLTTHIFDDIATLCDRV 227 (325)
T ss_pred HHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhhe
Confidence 1356778888888888888876655
No 346
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.69 E-value=1.2e-16 Score=167.30 Aligned_cols=138 Identities=21% Similarity=0.182 Sum_probs=100.8
Q ss_pred cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310 31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
.-+|++.+|.. .++|+++||+|++||++||||++|||||||+++|.+++ .|.+|+|.++|.++. ...+|+.+++
T Consensus 1286 ~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~-~~~~G~I~IdG~dI~~i~~~~LR~~i~i 1364 (1522)
T TIGR00957 1286 EFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-ESAEGEIIIDGLNIAKIGLHDLRFKITI 1364 (1522)
T ss_pred EEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-cCCCCeEEECCEEccccCHHHHHhcCeE
Confidence 34677777754 47999999999999999999999999999999999985 578999999998763 4677899999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-------hhhcc----CCCCCchhhHHHHH
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-------QRCFL----SGPWGTFESSVLLA 174 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-------~~~~~----~~~~~~~~~~~~~~ 174 (240)
|+|+|.++.. |+++|+... . ...+++..+.++ ..++.+. .+..+ ...+++++|++.++
T Consensus 1365 VpQdp~LF~g-TIr~NLdp~-----~-~~sdeei~~al~----~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1365 IPQDPVLFSG-SLRMNLDPF-----S-QYSDEEVWWALE----LAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred ECCCCcccCc-cHHHHcCcc-----c-CCCHHHHHHHHH----HcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHH
Confidence 9999999875 999998621 1 122333222222 2222111 11111 23567889999999
Q ss_pred HHHhcc
Q psy310 175 LAMYNR 180 (240)
Q Consensus 175 ~~~~~~ 180 (240)
+++.+.
T Consensus 1434 RALLr~ 1439 (1522)
T TIGR00957 1434 RALLRK 1439 (1522)
T ss_pred HHHHcC
Confidence 988763
No 347
>PLN03073 ABC transporter F family; Provisional
Probab=99.68 E-value=4e-16 Score=152.69 Aligned_cols=134 Identities=14% Similarity=0.158 Sum_probs=97.2
Q ss_pred cCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccc
Q psy310 31 TNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQD 109 (240)
Q Consensus 31 ~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~ 109 (240)
.-+|+.+.|+ .+.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.+.+ +..++|++|+
T Consensus 510 ~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl-l~p~~G~I~~~~--------~~~igyv~Q~ 580 (718)
T PLN03073 510 SFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE-LQPSSGTVFRSA--------KVRMAVFSQH 580 (718)
T ss_pred EEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCceEEECC--------ceeEEEEecc
Confidence 3468888885 45799999999999999999999999999999999997 567899999865 2358999998
Q ss_pred ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+. ..+++.++.......... ... .+.++.++..+++.. .....+...|+++++++.+++++...
T Consensus 581 ~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~ 645 (718)
T PLN03073 581 HV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 645 (718)
T ss_pred cc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence 63 233443332221111111 111 234566777777763 44556677889999999999998865
No 348
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.68 E-value=4.7e-16 Score=139.91 Aligned_cols=136 Identities=22% Similarity=0.291 Sum_probs=111.4
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhhhceEEccccc--cc
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRKLSCYIMQDNQ--LH 113 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~~~g~v~Q~~~--~~ 113 (240)
..+++++||++.+||.+||||+||||||||-++|.+++. .+|+|.+.|.++. ..++++.+-+|||||. +.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~--s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs 377 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP--SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS 377 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC--cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence 468999999999999999999999999999999999743 3599999998764 2456788999999985 67
Q ss_pred ccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHHHHhcc
Q psy310 114 ANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 114 ~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.++|.+.+...... ....+...++.+++.+.+..++++.. ..+++...++++.|++.+++++...
T Consensus 378 PRmtV~qII~EGL~v-h~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLk 444 (534)
T COG4172 378 PRMTVGQIIEEGLRV-HEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILK 444 (534)
T ss_pred cccCHHHHhhhhhhh-cCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcC
Confidence 888998877655433 23356777778888888888887654 5667778899999999999998765
No 349
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.68 E-value=1.2e-16 Score=166.92 Aligned_cols=136 Identities=21% Similarity=0.242 Sum_probs=99.8
Q ss_pred CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
-+|++.+|. ..++|+++||+|++||++||||++|||||||+++|.|++. .+|+|.++|.++. ...+|+.++||
T Consensus 1220 f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~I 1297 (1490)
T TIGR01271 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVI 1297 (1490)
T ss_pred EEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEE
Confidence 467887775 4789999999999999999999999999999999999853 6899999998763 45678999999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh-------cc----CCCCCchhhHHHHHH
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC-------FL----SGPWGTFESSVLLAL 175 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~ 175 (240)
+|+|.++.. |+++|+.... ....+...+ +++..++.+.... .+ ...+++++|++.+++
T Consensus 1298 pQdp~LF~G-TIR~NLdp~~------~~tdeei~~----aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LAR 1366 (1490)
T TIGR01271 1298 PQKVFIFSG-TFRKNLDPYE------QWSDEEIWK----VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLAR 1366 (1490)
T ss_pred eCCCccCcc-CHHHHhCccc------CCCHHHHHH----HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHH
Confidence 999999864 9999996321 112222222 2333332221111 11 125678899999999
Q ss_pred HHhcc
Q psy310 176 AMYNR 180 (240)
Q Consensus 176 ~~~~~ 180 (240)
++.++
T Consensus 1367 ALLr~ 1371 (1490)
T TIGR01271 1367 SILSK 1371 (1490)
T ss_pred HHhCC
Confidence 87763
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.68 E-value=2.4e-16 Score=129.73 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=60.2
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~ 111 (240)
.|+.+.++++.+++++ |+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.. ++|++|++.
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~---------i~~~~q~~~ 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQ-LIPNGDNDEWDGIT---------PVYKPQYID 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcC-CCCCCcEEEECCEE---------EEEEcccCC
Confidence 5788999999999985 99999999999999999999999999997 56789999998843 678888653
No 351
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.7e-16 Score=128.79 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=96.7
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------------hhhh
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------------SQFR 100 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------------~~~~ 100 (240)
.++++-|+...-.++|||+++|||+.||||+|||||||||+||++. ..|+.|+|.+.-.+... ..++
T Consensus 10 ~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r-l~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~R 88 (258)
T COG4107 10 SGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR-LTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLR 88 (258)
T ss_pred hhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcc-cCCCCCeEEEEcCCCCchhHhhhchHHHHHHhh
Confidence 3577889999999999999999999999999999999999999997 56889999986543211 1134
Q ss_pred hhceEEccccccccccc------HHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-hhccCCCCCchhhHHHH
Q psy310 101 KLSCYIMQDNQLHANLT------VEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-RCFLSGPWGTFESSVLL 173 (240)
Q Consensus 101 ~~~g~v~Q~~~~~~~lt------v~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 173 (240)
...|+|.|+|.--..+. +.|-++..-..+++ ..+..+..+++.+.+.... +..+...+++++|++.+
T Consensus 89 TeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG------~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi 162 (258)
T COG4107 89 TEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG------NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI 162 (258)
T ss_pred hccceeecCccccceeeeccCCccchhHHhhhhhhhh------hHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence 45799999985332232 23322211111111 2233455566666654332 22334568899999999
Q ss_pred HHHHhcc
Q psy310 174 ALAMYNR 180 (240)
Q Consensus 174 ~~~~~~~ 180 (240)
++.++.+
T Consensus 163 ARnLVt~ 169 (258)
T COG4107 163 ARNLVTR 169 (258)
T ss_pred HHHhccC
Confidence 9988765
No 352
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=9.4e-17 Score=148.57 Aligned_cols=140 Identities=26% Similarity=0.273 Sum_probs=102.9
Q ss_pred ccCCCceecCCCce--eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhce
Q psy310 30 NTNTNNNCEPNEKT--ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSC 104 (240)
Q Consensus 30 ~~~~~~~~~~~~~~--~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g 104 (240)
-.-+|++.+|.+.. +|+++||+|.+||+++|+|+||||||||+++|.|.+ .|++|+|.++|.++. ....++.++
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCeeeECCcChhhCChhhHHHHHh
Confidence 35567777777755 999999999999999999999999999999999975 478999999998763 233677899
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhc-----------cCCCCCchhhHHHH
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCF-----------LSGPWGTFESSVLL 173 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 173 (240)
++.|.+.++ .-|+++|++++. +..+.++ +.++++++++.+..... -...|+++++|+.+
T Consensus 416 vl~Qr~hlF-~~Tlr~NL~lA~-----~~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAl 485 (573)
T COG4987 416 VLTQRVHLF-SGTLRDNLRLAN-----PDASDEE----LWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLAL 485 (573)
T ss_pred hhccchHHH-HHHHHHHHhhcC-----CCCCHHH----HHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHH
Confidence 999998876 458999998642 1222222 33344555544433222 12356788899999
Q ss_pred HHHHhcc
Q psy310 174 ALAMYNR 180 (240)
Q Consensus 174 ~~~~~~~ 180 (240)
++.+.+.
T Consensus 486 AR~LL~d 492 (573)
T COG4987 486 ARALLHD 492 (573)
T ss_pred HHHHHcC
Confidence 8887663
No 353
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.67 E-value=3.8e-16 Score=139.99 Aligned_cols=117 Identities=25% Similarity=0.357 Sum_probs=93.0
Q ss_pred EECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHH
Q psy310 60 IMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 138 (240)
Q Consensus 60 LvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~ 138 (240)
|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|++|++.+++.+++.+++.+..... ......
T Consensus 1 l~G~nGsGKSTLl~~iaGl-~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGF-EQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCC-CCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHH
Confidence 6899999999999999997 5678999999998753 2234567999999999999999999998764321 122333
Q ss_pred HHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 139 RKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
..+.+.++++.+++.+.........|++++|++.+++++...
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~ 118 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFK 118 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 445667788888887777777778899999999999999875
No 354
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.67 E-value=2.7e-16 Score=163.79 Aligned_cols=93 Identities=28% Similarity=0.381 Sum_probs=79.2
Q ss_pred cCCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEE-CCccC---Cchhhhhhc
Q psy310 31 TNTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI-NGHER---NLSQFRKLS 103 (240)
Q Consensus 31 ~~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v-~g~~~---~~~~~~~~~ 103 (240)
.-+|+.+.|+. .++|+++||+|++||+++|+||||||||||+++|+|++ .|++|+|.+ +|.++ ....+++.+
T Consensus 384 ~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~i~~g~~i~~~~~~~lr~~I 462 (1466)
T PTZ00265 384 QFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-DPTEGDIIINDSHNLKDINLKWWRSKI 462 (1466)
T ss_pred EEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-cCCCCeEEEeCCcchhhCCHHHHHHhc
Confidence 44688888875 36999999999999999999999999999999999984 578999999 45654 334567889
Q ss_pred eEEcccccccccccHHHHHHHH
Q psy310 104 CYIMQDNQLHANLTVEEAMNVA 125 (240)
Q Consensus 104 g~v~Q~~~~~~~ltv~e~l~~~ 125 (240)
+||+|++.++. .|++|++.+.
T Consensus 463 g~V~Q~~~LF~-~TI~eNI~~g 483 (1466)
T PTZ00265 463 GVVSQDPLLFS-NSIKNNIKYS 483 (1466)
T ss_pred cEecccccchh-ccHHHHHHhc
Confidence 99999999886 5999999874
No 355
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.67 E-value=3.8e-16 Score=134.56 Aligned_cols=100 Identities=24% Similarity=0.284 Sum_probs=78.9
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHH
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEA 121 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~ 121 (240)
..++++|||+|++||++||||+||||||||.|+|.|+ ..|++|+|.+.|.+.... .
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-~~pt~G~i~f~g~~i~~~--~--------------------- 81 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-EEPTSGEILFEGKDITKL--S--------------------- 81 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC-cCCCCceEEEcCcchhhc--c---------------------
Confidence 5799999999999999999999999999999999997 668999999999774211 1
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhc
Q psy310 122 MNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 122 l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
.....+.+.++++.+++.. ...+++...++++.|++.+|+++..
T Consensus 82 --------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal 126 (268)
T COG4608 82 --------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALAL 126 (268)
T ss_pred --------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhh
Confidence 1233455666777777544 4566777788888899888887654
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=1.1e-15 Score=122.82 Aligned_cols=75 Identities=36% Similarity=0.570 Sum_probs=63.2
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q 108 (240)
+|+.+.+.++.+|++++|+|++||+++|+|+||||||||+++|+|+ .++.+|+|.++|.+... ......++|++|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~-~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL-LKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred EEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 3566777777899999999999999999999999999999999997 45789999999976532 234567889988
No 357
>KOG0055|consensus
Probab=99.65 E-value=5.8e-16 Score=154.86 Aligned_cols=143 Identities=21% Similarity=0.289 Sum_probs=105.2
Q ss_pred cCCCceecCCCce---eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---Cchhhhhhce
Q psy310 31 TNTNNNCEPNEKT---ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSC 104 (240)
Q Consensus 31 ~~~~~~~~~~~~~---~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g 104 (240)
.-+|+.-+|..+| +|+++||+|++|+.+||||||||||||...+|-.+|. |++|.|.++|.++ ++..+|+.++
T Consensus 989 ~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd-p~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 989 EFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD-PDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred EEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCcccccCCHHHHHHhcc
Confidence 3467777777665 8999999999999999999999999999999999865 6899999999876 4577899999
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhc---CCcchhhhhc----cCCCCCchhhHHHHHHHH
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYR---SDTNHAQRCF----LSGPWGTFESSVLLALAM 177 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 177 (240)
.|.|+|.++. -|++||+.+. . ...+..+..+.++..-.+ ..+++-.+.. -...+++++||+.+|+++
T Consensus 1068 lVsQEP~LF~-~TIrENI~YG----~-~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi 1141 (1228)
T KOG0055|consen 1068 LVSQEPVLFN-GTIRENIAYG----S-EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI 1141 (1228)
T ss_pred eeccCchhhc-ccHHHHHhcc----C-CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH
Confidence 9999999874 5999999875 1 113343333333322111 0111111111 123678899999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
.+.
T Consensus 1142 lRn 1144 (1228)
T KOG0055|consen 1142 LRN 1144 (1228)
T ss_pred HcC
Confidence 864
No 358
>KOG0056|consensus
Probab=99.65 E-value=1.7e-16 Score=145.49 Aligned_cols=140 Identities=23% Similarity=0.269 Sum_probs=97.4
Q ss_pred CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310 33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q 108 (240)
.|+..+|. ++++|+||||.+.+|+.++||||||+||||++|+|-.++. ..+|.|.++|+|+. .+.+|..+|+|||
T Consensus 541 snvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd-v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQ 619 (790)
T KOG0056|consen 541 SNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD-VNSGSITIDGQDIRNVTQSSLRSSIGVVPQ 619 (790)
T ss_pred EEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh-ccCceEEEcCchHHHHHHHHHHHhcCcccC
Confidence 45666655 4789999999999999999999999999999999999754 56899999999873 4567899999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhc---CCcchhhhhc----cCCCCCchhhHHHHHHHHhc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYR---SDTNHAQRCF----LSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 179 (240)
|..++.+ |+..|++++.. ....++..+.+++...+ +..++..... -...+++++|++.+++.+.+
T Consensus 620 DtvLFNd-TI~yNIryak~-----~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 620 DTVLFND-TILYNIRYAKP-----SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK 691 (790)
T ss_pred cceeecc-eeeeheeecCC-----CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc
Confidence 9988754 66666665421 11223333333333221 1222221111 12356788889888876654
No 359
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=5.5e-15 Score=119.49 Aligned_cols=149 Identities=21% Similarity=0.226 Sum_probs=105.5
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEEC--CccCCc---------hhhhhhceEEcccc
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN--GHERNL---------SQFRKLSCYIMQDN 110 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~--g~~~~~---------~~~~~~~g~v~Q~~ 110 (240)
-++|+++||+|+.||+++|=||||||||||||+|.+-|. |++|+|.+. |.-+.+ .-.++-+|||.|.-
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 368999999999999999999999999999999999754 789999874 221111 12246789999987
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHHHHhcccccceeecc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLALAMYNRIHEKTILKS 189 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 189 (240)
...+..+..+.++.... ..+......+..++.++.++.+++. ..-.+...+++++|++-+++.+.-.+ .-.+|+.
T Consensus 103 RviPRV~aLdVvaePll---~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~-pILLLDE 178 (235)
T COG4778 103 RVIPRVSALDVVAEPLL---ARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDY-PILLLDE 178 (235)
T ss_pred HhccCcchHHHHHhHHH---HcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccC-ceEEecC
Confidence 77776666665554322 2244556667778888888887654 33334456788899999998876543 2234555
Q ss_pred ceeEEe
Q psy310 190 VSGRLR 195 (240)
Q Consensus 190 vsl~I~ 195 (240)
.+-++.
T Consensus 179 PTasLD 184 (235)
T COG4778 179 PTASLD 184 (235)
T ss_pred Cccccc
Confidence 555443
No 360
>PLN03130 ABC transporter C family member; Provisional
Probab=99.59 E-value=3.5e-15 Score=156.81 Aligned_cols=131 Identities=20% Similarity=0.254 Sum_probs=91.4
Q ss_pred CCCceecCC---CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCc-cEEEECCccCCchhhhhhceEEc
Q psy310 32 NTNNNCEPN---EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE-GSITINGHERNLSQFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~---~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~-G~V~v~g~~~~~~~~~~~~g~v~ 107 (240)
-+|+...++ ++++|+++||+|++||+++|+||+|||||||+++|.|++ ++.+ |+|.+ +..++||+
T Consensus 617 ~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~GG~I~l----------~~~Iayv~ 685 (1622)
T PLN03130 617 IKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-PPRSDASVVI----------RGTVAYVP 685 (1622)
T ss_pred EEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh-ccCCCceEEE----------cCeEEEEc
Confidence 356666665 367999999999999999999999999999999999984 5678 89975 34689999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCC---cchhhhhc----cCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD---TNHAQRCF----LSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|+|.++. .|++||+.+... .+++...+.++...-..+ +++..... -...+++++||+.+|++++.+
T Consensus 686 Q~p~Lfn-gTIreNI~fg~~------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 758 (1622)
T PLN03130 686 QVSWIFN-ATVRDNILFGSP------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1622)
T ss_pred CccccCC-CCHHHHHhCCCc------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCC
Confidence 9999875 699999986421 122222332222210000 11111111 123678899999999998864
No 361
>PLN03232 ABC transporter C family member; Provisional
Probab=99.59 E-value=4.2e-15 Score=155.58 Aligned_cols=132 Identities=22% Similarity=0.247 Sum_probs=90.8
Q ss_pred CCCceecCC---CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcc
Q psy310 32 NTNNNCEPN---EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQ 108 (240)
Q Consensus 32 ~~~~~~~~~---~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q 108 (240)
-+|+...++ ++++|+|+||+|++||+++|+||+|||||||+++|.|++ +|.+|.+. ..+..++||+|
T Consensus 617 ~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~G~i~---------~~~~~Iayv~Q 686 (1495)
T PLN03232 617 IKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL-SHAETSSV---------VIRGSVAYVPQ 686 (1495)
T ss_pred EEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-cccCCCEE---------EecCcEEEEcC
Confidence 356666665 367999999999999999999999999999999999985 46677553 23567999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCC---cchhhhhcc----CCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD---TNHAQRCFL----SGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|.++. .|++||+.+.. ..+++...+.++......+ +++.....+ ...|++++||+.+|++++.+
T Consensus 687 ~p~Lf~-gTIreNI~fg~------~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 758 (1495)
T PLN03232 687 VSWIFN-ATVRENILFGS------DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1495)
T ss_pred cccccc-ccHHHHhhcCC------ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcC
Confidence 999875 59999998642 1123333333332211001 111111111 13678899999999998764
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.58 E-value=7.3e-15 Score=154.07 Aligned_cols=126 Identities=25% Similarity=0.257 Sum_probs=89.5
Q ss_pred ecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccc
Q psy310 37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANL 116 (240)
Q Consensus 37 ~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~l 116 (240)
++++++++|+++||+|++||+++|+|||||||||||++|+|+ .++.+|+|.+. +.++|++|++.++ ..
T Consensus 668 ~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~-~~~~~G~i~~~----------~~i~yv~Q~~~l~-~~ 735 (1560)
T PTZ00243 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ-FEISEGRVWAE----------RSIAYVPQQAWIM-NA 735 (1560)
T ss_pred cccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCcEEEEC----------CeEEEEeCCCccC-CC
Confidence 455678899999999999999999999999999999999997 55789999863 3589999999876 57
Q ss_pred cHHHHHHHHHHHhcCCCccHHHHHHH-----HHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 117 TVEEAMNVATALKLGKDLTKAARKDV-----VRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 117 tv~e~l~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++|++.+.... ......+. +...++.+ +............+++++|++.++++++..
T Consensus 736 Tv~enI~~~~~~------~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~ 800 (1560)
T PTZ00243 736 TVRGNILFFDEE------DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYAN 800 (1560)
T ss_pred cHHHHHHcCChh------hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999998763110 11111111 11222222 222222233445778899999999988764
No 363
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.58 E-value=9.7e-15 Score=153.12 Aligned_cols=132 Identities=23% Similarity=0.269 Sum_probs=92.8
Q ss_pred cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcc
Q psy310 31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQ 108 (240)
Q Consensus 31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q 108 (240)
.-+|+.+.++. +++|+++||+|++||+++|+|||||||||||++|+|+ .++.+|+|.++| .++||+|
T Consensus 638 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~-~~~~~G~i~~~g----------~i~yv~Q 706 (1522)
T TIGR00957 638 TVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE-MDKVEGHVHMKG----------SVAYVPQ 706 (1522)
T ss_pred EEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CccCCcEEEECC----------EEEEEcC
Confidence 34567777754 5799999999999999999999999999999999997 557899999986 3899999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh--hhcCCc-ch----hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL--FYRSDT-NH----AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l--~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.++ ..|++||+.+... .+++...+.++.. .+.++. +. .........+++++|++.++++++.+
T Consensus 707 ~~~l~-~~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~ 778 (1522)
T TIGR00957 707 QAWIQ-NDSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 778 (1522)
T ss_pred Ccccc-CCcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99875 5799999986421 1222222222211 111111 00 11112334678899999999988764
No 364
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.58 E-value=9.7e-15 Score=152.79 Aligned_cols=122 Identities=22% Similarity=0.260 Sum_probs=86.4
Q ss_pred CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHH
Q psy310 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEE 120 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e 120 (240)
.+++|+++||+|++||+++|+|||||||||||++|+|+ .++.+|+|.++| .++|++|++.++. .|++|
T Consensus 438 ~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~-~~~~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE-LEPSEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 36799999999999999999999999999999999997 557899999987 3899999999876 49999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHH-----HhhhcCCcch--hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 121 AMNVATALKLGKDLTKAARKDVVR-----TLFYRSDTNH--AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 121 ~l~~~~~~~~~~~l~~~~~~~~~~-----~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|+.+... . ......+.++ ..+..+.... .........+++++|++.++++++..
T Consensus 506 NI~~g~~--~----~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~ 566 (1490)
T TIGR01271 506 NIIFGLS--Y----DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKD 566 (1490)
T ss_pred HHHhccc--c----chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcC
Confidence 9986421 1 1111111111 1111111110 01111234678899999999988763
No 365
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.56 E-value=1.4e-14 Score=119.13 Aligned_cols=61 Identities=25% Similarity=0.246 Sum_probs=49.0
Q ss_pred CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcc
Q psy310 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQ 108 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q 108 (240)
.+++|+++||+|++||+++|+|||||||||||++|.+ ++|++.+.+..... .+..++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~--~~~~~~~~~q 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKF--SRNKLIFIDQ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCccccc--ccccEEEEhH
Confidence 3679999999999999999999999999999999853 47999988763221 1234678776
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.54 E-value=3.8e-14 Score=134.08 Aligned_cols=131 Identities=27% Similarity=0.308 Sum_probs=96.4
Q ss_pred cCCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccc
Q psy310 31 TNTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQD 109 (240)
Q Consensus 31 ~~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~ 109 (240)
.-.|+.+.|++ +.+++++||.|.+|+++|||||||+||||||++|+|. ..|.+|.|.+... -.+||..|+
T Consensus 323 ~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~-~~~~~G~v~~g~~--------v~igyf~Q~ 393 (530)
T COG0488 323 EFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE-LGPLSGTVKVGET--------VKIGYFDQH 393 (530)
T ss_pred EEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhh-cccCCceEEeCCc--------eEEEEEEeh
Confidence 45788899966 6999999999999999999999999999999999997 5567999988542 347999998
Q ss_pred cc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHHHHhc
Q psy310 110 NQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 110 ~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
.. +.+..++.+.+.-.. .... ...++.++.+++.... ....+...|++++.++.++..+..
T Consensus 394 ~~~l~~~~t~~d~l~~~~-----~~~~----e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 394 RDELDPDKTVLEELSEGF-----PDGD----EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred hhhcCccCcHHHHHHhhC-----cccc----HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhcc
Confidence 73 335567777654211 1111 4456667777776543 334455678888888887776655
No 367
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.53 E-value=1.3e-13 Score=143.91 Aligned_cols=39 Identities=38% Similarity=0.492 Sum_probs=33.4
Q ss_pred ceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHH
Q psy310 35 NNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLN 73 (240)
Q Consensus 35 ~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr 73 (240)
++.+.-....|+++||+|++||+++|+|+||||||||++
T Consensus 601 L~l~~~~~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 601 LTLSKATKHNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred EEEeccccCCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 334433445799999999999999999999999999999
No 368
>KOG0054|consensus
Probab=99.52 E-value=2.4e-14 Score=145.95 Aligned_cols=88 Identities=33% Similarity=0.432 Sum_probs=75.7
Q ss_pred CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEEcccc
Q psy310 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYIMQDN 110 (240)
Q Consensus 34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v~Q~~ 110 (240)
++-|+++..++|++|||.|++||+|||||+.|||||||+.+|-.+ ..+.+|+|.|+|.|+ .+.++|+.++++||||
T Consensus 1145 ~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl-~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdP 1223 (1381)
T KOG0054|consen 1145 SLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL-VEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDP 1223 (1381)
T ss_pred EEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh-cCccCCeEEEcCeecccccHHHHHhcCeeeCCCC
Confidence 344555556899999999999999999999999999999999997 557899999999886 4578899999999999
Q ss_pred cccccccHHHHHH
Q psy310 111 QLHANLTVEEAMN 123 (240)
Q Consensus 111 ~~~~~ltv~e~l~ 123 (240)
.++. -|++.|++
T Consensus 1224 vLFs-GTvR~NLD 1235 (1381)
T KOG0054|consen 1224 VLFS-GTVRFNLD 1235 (1381)
T ss_pred ceec-CccccccC
Confidence 9874 47777765
No 369
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.52 E-value=5e-14 Score=128.51 Aligned_cols=31 Identities=35% Similarity=0.705 Sum_probs=28.2
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310 194 LRSGELTAIMGPSGAGKSTLLNILTGYKILR 224 (240)
Q Consensus 194 I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~ 224 (240)
|+.||+++++||||-|||||+++|+|..+|.
T Consensus 364 i~~gEvigilGpNgiGKTTFvk~LAG~ikPd 394 (591)
T COG1245 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPD 394 (591)
T ss_pred eecceEEEEECCCCcchHHHHHHHhccccCC
Confidence 6788999999999999999999999986654
No 370
>KOG0066|consensus
Probab=99.52 E-value=8.1e-14 Score=126.76 Aligned_cols=44 Identities=27% Similarity=0.439 Sum_probs=40.4
Q ss_pred CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
|..+...++.+|.+.|+.|-.|.++|||||||-||||||+.|+.
T Consensus 269 nF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~ 312 (807)
T KOG0066|consen 269 NFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAA 312 (807)
T ss_pred eeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHh
Confidence 45566778889999999999999999999999999999999987
No 371
>KOG0062|consensus
Probab=99.52 E-value=5.1e-14 Score=129.85 Aligned_cols=51 Identities=25% Similarity=0.332 Sum_probs=46.2
Q ss_pred CCcccCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310 27 TNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
.-.--+.+.+.++|++.+|.+-++.+..|.++||||+||+|||||||+|+-
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 334456678999999999999999999999999999999999999999986
No 372
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.47 E-value=7e-14 Score=105.53 Aligned_cols=73 Identities=18% Similarity=0.085 Sum_probs=59.1
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcccccccccccH
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTV 118 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q~~~~~~~ltv 118 (240)
.++|++++|++++||+++|+||||||||||++++. +|.+.+.|.+... ....+..++++|+ ....++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ti 71 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIRL 71 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhhH
Confidence 57899999999999999999999999999999985 6789999877532 2344566777777 345678
Q ss_pred HHHHHH
Q psy310 119 EEAMNV 124 (240)
Q Consensus 119 ~e~l~~ 124 (240)
++|+.+
T Consensus 72 ~~Ni~~ 77 (107)
T cd00820 72 RLNIFL 77 (107)
T ss_pred Hhhcee
Confidence 888876
No 373
>KOG0054|consensus
Probab=99.47 E-value=2.2e-13 Score=138.98 Aligned_cols=122 Identities=25% Similarity=0.404 Sum_probs=89.3
Q ss_pred CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHH
Q psy310 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEE 120 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e 120 (240)
..+.|+||||+|++|+.+||||+-|||||+||.+|.|. -+..+|.|.++|. ++||+|.|+++ +.|++|
T Consensus 533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGE-m~~~sG~v~v~gs----------iaYv~Q~pWI~-ngTvre 600 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE-MPKLSGSVAVNGS----------VAYVPQQPWIQ-NGTVRE 600 (1381)
T ss_pred CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcC-cccccceEEEcCe----------EEEeccccHhh-CCcHHH
Confidence 34599999999999999999999999999999999997 5578999999883 79999999886 569999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh---hhhcc----CCCCCchhhHHHHHHHHhcc
Q psy310 121 AMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA---QRCFL----SGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 121 ~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~ 180 (240)
|+.|... .+++.-++.+++..-..+++-. +...+ -..++++++|+.+|+|.|+.
T Consensus 601 NILFG~~------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ 661 (1381)
T KOG0054|consen 601 NILFGSP------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD 661 (1381)
T ss_pred hhhcCcc------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhcc
Confidence 9987532 2333333344432211121111 11111 12578899999999999875
No 374
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.44 E-value=2.3e-13 Score=122.37 Aligned_cols=82 Identities=27% Similarity=0.440 Sum_probs=67.7
Q ss_pred CCceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcc
Q psy310 33 TNNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q 108 (240)
.|+.++|.+. --+.+|+++|++||+|-|+|.||||||||+++|.|+ ..|++|+|.++|.+++. .++|+..+-||-
T Consensus 326 rnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL-~~PqsG~I~ldg~pV~~e~ledYR~LfSavFs 404 (546)
T COG4615 326 RNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL-YQPQSGEILLDGKPVSAEQLEDYRKLFSAVFS 404 (546)
T ss_pred eeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcc-cCCCCCceeECCccCCCCCHHHHHHHHHHHhh
Confidence 4566666665 468899999999999999999999999999999998 45789999999998753 456677777887
Q ss_pred ccccccc
Q psy310 109 DNQLHAN 115 (240)
Q Consensus 109 ~~~~~~~ 115 (240)
|..+++.
T Consensus 405 DyhLF~~ 411 (546)
T COG4615 405 DYHLFDQ 411 (546)
T ss_pred hHhhhHh
Confidence 7766644
No 375
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.44 E-value=1.1e-13 Score=119.48 Aligned_cols=58 Identities=41% Similarity=0.574 Sum_probs=48.6
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh-----ccCChhhhc
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL-----LEYSHKDLA 237 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~-----~~~~~~~~~ 237 (240)
.|+++.+++++||+|.+||+++|+||||||||||+|+|+|+.+| +++++ ..+++|++|
T Consensus 11 ~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 11 GYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred EECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 46688999999999999999999999999999999999998665 45655 345666654
No 376
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.1e-13 Score=122.32 Aligned_cols=90 Identities=31% Similarity=0.441 Sum_probs=74.5
Q ss_pred CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310 33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q 108 (240)
.|+...|.. +++|+++||.+.+|+.++++||+|+||||++++|..++. +.+|.|.++|+++. ...+++.+|+|||
T Consensus 266 ~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD-~~sG~I~id~qdir~vtq~slR~aIg~VPQ 344 (497)
T COG5265 266 INVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD-VNSGSITIDGQDIRDVTQQSLRRAIGIVPQ 344 (497)
T ss_pred EEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC-CcCceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence 345555554 689999999999999999999999999999999999865 67999999998763 3567899999999
Q ss_pred cccccccccHHHHHHH
Q psy310 109 DNQLHANLTVEEAMNV 124 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~ 124 (240)
|..++.+ |...++.+
T Consensus 345 DtvLFND-ti~yni~y 359 (497)
T COG5265 345 DTVLFND-TIAYNIKY 359 (497)
T ss_pred cceehhh-hHHHHHhc
Confidence 9988743 56666654
No 377
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.38 E-value=2.3e-13 Score=113.78 Aligned_cols=109 Identities=18% Similarity=0.159 Sum_probs=72.1
Q ss_pred eeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC--------CCccEEEECCccCCchhhhhhceEEccccccccccc
Q psy310 46 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS--------GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLT 117 (240)
Q Consensus 46 ~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--------~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~lt 117 (240)
++++|++++| +++|+||||||||||+++|+|+..+ +..|++.+.|.+.........++++||++..+..
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~-- 90 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYS-- 90 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCcee--
Confidence 6789999999 9999999999999999999986321 1234576767654333345679999999876510
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 118 VEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 118 v~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
.. . .+.+.++++. .+.........++++++++.++.++..
T Consensus 91 ------------~~---~----~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~ 130 (197)
T cd03278 91 ------------II---S----QGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAI 130 (197)
T ss_pred ------------EE---e----hhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHH
Confidence 00 0 1122333333 222333445577888899988887753
No 378
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.37 E-value=7.9e-13 Score=107.54 Aligned_cols=113 Identities=24% Similarity=0.359 Sum_probs=80.6
Q ss_pred eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcccccccccccHHH
Q psy310 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEE 120 (240)
Q Consensus 44 ~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~~~~~~~ltv~e 120 (240)
-|-.+|.++..||++-|||||||||||||-.++|+ . |.+|+|.+.|.+.. ..++.+..+|+.|+..-...+.|+.
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm-~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-T-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCC-C-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 46778999999999999999999999999999998 4 46899999998874 3456778889988766555677777
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCc
Q psy310 121 AMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGT 166 (240)
Q Consensus 121 ~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 166 (240)
.+.+. . +...+...+..+...+++.++..+.+...+++
T Consensus 92 YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGG 129 (248)
T COG4138 92 YLTLH----Q----PDKTRTELLNDVAGALALDDKLGRSTNQLSGG 129 (248)
T ss_pred hhhhc----C----chHHHHHHHHHHHhhhcccchhhhhhhhcCcc
Confidence 65531 1 12344445555555555555554444444443
No 379
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.36 E-value=3.6e-12 Score=121.07 Aligned_cols=135 Identities=21% Similarity=0.248 Sum_probs=96.0
Q ss_pred cccCCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEc
Q psy310 29 TNTNTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107 (240)
Q Consensus 29 ~~~~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~ 107 (240)
.-+-+|++....+ +.++++.+|+|++||.+.|.||||||||||+|+|+|+.+ ..+|+|.... ...+-|++
T Consensus 392 ~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-~g~G~I~~P~--------~~~~lflp 462 (604)
T COG4178 392 GITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-WGSGRISMPA--------DSALLFLP 462 (604)
T ss_pred eeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-cCCCceecCC--------CCceEEec
Confidence 3445677766655 689999999999999999999999999999999999865 4578877652 22367999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhcc------CCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFL------SGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 180 (240)
|.|.+... |.+|.+.++.... ..+. +.+.+++..+++.+...+.- ...+.+++|++..|+.+.++
T Consensus 463 Q~PY~p~G-tLre~l~YP~~~~---~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~k 533 (604)
T COG4178 463 QRPYLPQG-TLREALCYPNAAP---DFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHK 533 (604)
T ss_pred CCCCCCCc-cHHHHHhCCCCCC---CCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcC
Confidence 99987555 8899887543211 1222 23344555556555443321 22567889999999999876
No 380
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=7.4e-13 Score=113.98 Aligned_cols=44 Identities=39% Similarity=0.641 Sum_probs=39.1
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~ 224 (240)
|+...+|+++||+|.+||+++|+||||||||||+|+|+|+.+|.
T Consensus 14 y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~ 57 (254)
T COG1121 14 YGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS 57 (254)
T ss_pred ECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 34336999999999999999999999999999999999985554
No 381
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.29 E-value=2.3e-12 Score=107.88 Aligned_cols=52 Identities=37% Similarity=0.533 Sum_probs=46.1
Q ss_pred hcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC--cccchhhhc
Q psy310 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KILRQLWLL 229 (240)
Q Consensus 178 ~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~--~~~~~~~~~ 229 (240)
.+.+++..+|+++|++|.+||+++|+||+|||||||+|+|++| ...++||+-
T Consensus 9 ~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~ 62 (240)
T COG1126 9 SKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62 (240)
T ss_pred eEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEEC
Confidence 3467788999999999999999999999999999999999999 455688773
No 382
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.28 E-value=3.2e-12 Score=109.10 Aligned_cols=45 Identities=36% Similarity=0.626 Sum_probs=41.1
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~ 224 (240)
.+....+|+++||+|.+||+|+|+|++|||||||+++|+||-+|.
T Consensus 12 ~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 12 SFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred EeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 345578999999999999999999999999999999999996665
No 383
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.27 E-value=4.1e-12 Score=105.08 Aligned_cols=47 Identities=34% Similarity=0.451 Sum_probs=41.5
Q ss_pred ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 51 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI 51 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE
Confidence 356799999999999999999999999999999999998544 56655
No 384
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.27 E-value=3.3e-12 Score=106.70 Aligned_cols=45 Identities=47% Similarity=0.671 Sum_probs=41.5
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~ 224 (240)
...++.+++++||.++.||++||+||||||||||+|+|+|...|+
T Consensus 10 ~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~ 54 (259)
T COG4559 10 SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD 54 (259)
T ss_pred EeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC
Confidence 456889999999999999999999999999999999999986655
No 385
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=5.5e-12 Score=107.70 Aligned_cols=48 Identities=42% Similarity=0.679 Sum_probs=41.7
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (235)
T cd03261 10 FGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59 (235)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3456799999999999999999999999999999999999544 45644
No 386
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.26 E-value=4.1e-12 Score=108.09 Aligned_cols=45 Identities=47% Similarity=0.620 Sum_probs=41.7
Q ss_pred cccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 179 ~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
-++.+++||+++||+|.+||+|+|+|+||||||||+++++|.--+
T Consensus 39 v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 39 VRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred EEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC
Confidence 357899999999999999999999999999999999999998555
No 387
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=5.7e-12 Score=105.98 Aligned_cols=48 Identities=31% Similarity=0.569 Sum_probs=41.4
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (213)
T cd03259 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59 (213)
T ss_pred eCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 3456799999999999999999999999999999999998543 45543
No 388
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=6.5e-12 Score=106.24 Aligned_cols=48 Identities=31% Similarity=0.480 Sum_probs=42.2
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|++++|+|++||++||+|+||||||||+++|+|+.. .+++|+
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 59 (220)
T cd03265 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV 59 (220)
T ss_pred ECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 445679999999999999999999999999999999999843 456765
No 389
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=7e-12 Score=106.64 Aligned_cols=45 Identities=38% Similarity=0.515 Sum_probs=40.3
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~ 224 (240)
......+|+|+||+|++||++||||+||||||||+|+|+|...|.
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt 80 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT 80 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC
Confidence 345668999999999999999999999999999999999985554
No 390
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.25 E-value=7.5e-12 Score=104.56 Aligned_cols=48 Identities=40% Similarity=0.591 Sum_probs=42.2
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 57 (206)
T TIGR03608 8 FGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57 (206)
T ss_pred ECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 445679999999999999999999999999999999999854 357755
No 391
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.24 E-value=7.5e-12 Score=105.55 Aligned_cols=45 Identities=49% Similarity=0.682 Sum_probs=40.5
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++|+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 63 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV 63 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence 5799999999999999999999999999999999999543 56655
No 392
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.24 E-value=3.2e-11 Score=102.85 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=31.9
Q ss_pred cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHH
Q psy310 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 72 (240)
Q Consensus 38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLL 72 (240)
...+..+|+++||+|++||+++|+|+||||||||+
T Consensus 4 ~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 4 RGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ccchhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 34556799999999999999999999999999996
No 393
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.24 E-value=9.7e-12 Score=105.74 Aligned_cols=57 Identities=35% Similarity=0.378 Sum_probs=47.7
Q ss_pred HHHHHHhcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 172 LLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 172 ~~~~~~~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
+....+..+++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 81 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 444445557788899999999999999999999999999999999999844 346654
No 394
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.24 E-value=7.6e-12 Score=110.75 Aligned_cols=53 Identities=38% Similarity=0.606 Sum_probs=44.7
Q ss_pred hcccc-cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc--hhhhcc
Q psy310 178 YNRIH-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR--QLWLLE 230 (240)
Q Consensus 178 ~~~~~-~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~--~~~~~~ 230 (240)
...++ ++.+|++|||+|++||++||+|+||||||||+|+|+|+..|. +++...
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G 66 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLG 66 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcC
Confidence 34566 589999999999999999999999999999999999996554 554443
No 395
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.24 E-value=7.9e-12 Score=105.12 Aligned_cols=48 Identities=38% Similarity=0.569 Sum_probs=41.3
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 9 ~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 58 (213)
T cd03235 9 YGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58 (213)
T ss_pred ECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 445679999999999999999999999999999999999954 345544
No 396
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.23 E-value=1.9e-12 Score=110.04 Aligned_cols=51 Identities=35% Similarity=0.617 Sum_probs=46.2
Q ss_pred HHHHhcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310 174 ALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224 (240)
Q Consensus 174 ~~~~~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~ 224 (240)
...+..++++-.++++|||+|++||++|||||||||||||+++|.|+.+|+
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~ 57 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS 57 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC
Confidence 344566788899999999999999999999999999999999999997776
No 397
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=9.2e-12 Score=104.49 Aligned_cols=49 Identities=27% Similarity=0.491 Sum_probs=42.5
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhhc
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWLL 229 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~~ 229 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+.
T Consensus 10 ~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (210)
T cd03269 10 FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60 (210)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 345679999999999999999999999999999999999843 4577653
No 398
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.23 E-value=9e-12 Score=104.56 Aligned_cols=45 Identities=36% Similarity=0.623 Sum_probs=39.8
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 6799999999999999999999999999999999998543 45543
No 399
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.23 E-value=8.9e-12 Score=104.28 Aligned_cols=45 Identities=40% Similarity=0.564 Sum_probs=39.9
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 679999999999999999999999999999999999844 345543
No 400
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.23 E-value=9.5e-12 Score=105.07 Aligned_cols=45 Identities=31% Similarity=0.488 Sum_probs=40.2
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+.+|+++||+|++||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 6799999999999999999999999999999999999543 56654
No 401
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.23 E-value=1e-11 Score=104.33 Aligned_cols=48 Identities=31% Similarity=0.525 Sum_probs=41.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 10 ~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (213)
T cd03262 10 FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59 (213)
T ss_pred ECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 345679999999999999999999999999999999999954 456655
No 402
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=1.1e-11 Score=101.74 Aligned_cols=47 Identities=40% Similarity=0.666 Sum_probs=40.8
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW 227 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~ 227 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++.
T Consensus 10 ~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (178)
T cd03229 10 YGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58 (178)
T ss_pred ECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3456799999999999999999999999999999999999554 4553
No 403
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=9.7e-12 Score=106.51 Aligned_cols=48 Identities=38% Similarity=0.620 Sum_probs=41.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 12 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (239)
T cd03296 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61 (239)
T ss_pred ECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 445679999999999999999999999999999999999954 356654
No 404
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.23 E-value=1.2e-11 Score=100.23 Aligned_cols=48 Identities=38% Similarity=0.562 Sum_probs=41.6
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
+.++.+|++++|+|++||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 10 ~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~ 59 (163)
T cd03216 10 FGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV 59 (163)
T ss_pred ECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 345679999999999999999999999999999999999944 446654
No 405
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.23 E-value=1.1e-11 Score=103.59 Aligned_cols=48 Identities=31% Similarity=0.571 Sum_probs=41.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~ 60 (200)
T PRK13540 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60 (200)
T ss_pred eCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEE
Confidence 345679999999999999999999999999999999999954 456654
No 406
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.22 E-value=9.6e-12 Score=110.40 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=41.8
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|.+||++||+|+||||||||+++|+|+..| +++++
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 52 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARV 52 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3456799999999999999999999999999999999999544 45644
No 407
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.22 E-value=9.9e-12 Score=105.01 Aligned_cols=48 Identities=33% Similarity=0.483 Sum_probs=41.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|++||++||+|+||||||||+++|+|+.. .+++++
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (222)
T cd03224 10 YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59 (222)
T ss_pred cCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 345679999999999999999999999999999999999954 356655
No 408
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=1.2e-11 Score=104.70 Aligned_cols=45 Identities=40% Similarity=0.654 Sum_probs=40.2
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 63 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV 63 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 5799999999999999999999999999999999999543 56654
No 409
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.22 E-value=1e-11 Score=105.90 Aligned_cols=48 Identities=33% Similarity=0.616 Sum_probs=41.6
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (236)
T cd03219 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF 59 (236)
T ss_pred ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 345679999999999999999999999999999999999854 356654
No 410
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.22 E-value=1.1e-11 Score=104.56 Aligned_cols=47 Identities=32% Similarity=0.499 Sum_probs=41.8
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQL 226 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~ 226 (240)
.|+.-.+|++|||+|.+||+++|+|+||+|||||+|+|+|+..+ ++|
T Consensus 12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I 60 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60 (237)
T ss_pred cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE
Confidence 45667899999999999999999999999999999999999555 455
No 411
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.22 E-value=1.1e-11 Score=105.54 Aligned_cols=48 Identities=27% Similarity=0.573 Sum_probs=42.0
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++|+
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (232)
T cd03218 10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL 59 (232)
T ss_pred eCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 4456799999999999999999999999999999999998543 56665
No 412
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.22 E-value=1.2e-11 Score=103.07 Aligned_cols=48 Identities=33% Similarity=0.506 Sum_probs=41.7
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc--ccchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--ILRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~--~~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+. ..+++|+
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (198)
T TIGR01189 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRW 59 (198)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence 44568999999999999999999999999999999999984 3446654
No 413
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.22 E-value=1.1e-11 Score=96.87 Aligned_cols=42 Identities=45% Similarity=0.716 Sum_probs=37.5
Q ss_pred eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
|++++|+|++||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~ 44 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILI 44 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEE
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccc
Confidence 6899999999999999999999999999999999554 56644
No 414
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.22 E-value=1.2e-11 Score=104.01 Aligned_cols=48 Identities=27% Similarity=0.580 Sum_probs=41.8
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~ 59 (213)
T cd03301 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59 (213)
T ss_pred ECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 345679999999999999999999999999999999999844 356655
No 415
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.22 E-value=8.9e-12 Score=106.71 Aligned_cols=48 Identities=40% Similarity=0.664 Sum_probs=41.6
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc----ccchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK----ILRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~----~~~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+. ..+++++
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~ 61 (243)
T TIGR01978 10 VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61 (243)
T ss_pred ECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEE
Confidence 44567999999999999999999999999999999999982 3456654
No 416
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.22 E-value=1.2e-11 Score=104.09 Aligned_cols=46 Identities=41% Similarity=0.569 Sum_probs=40.6
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc--ccchhhh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--ILRQLWL 228 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~--~~~~~~~ 228 (240)
++.+|+++||+|++||+++|+|+||||||||+++|+|+. ..+++|+
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 61 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 467999999999999999999999999999999999984 3456654
No 417
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9.5e-12 Score=104.96 Aligned_cols=44 Identities=43% Similarity=0.656 Sum_probs=40.7
Q ss_pred ccc-ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310 181 IHE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224 (240)
Q Consensus 181 ~~~-~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~ 224 (240)
..+ +.||++|||+|++||+.||+||||||||||..+|+|...|.
T Consensus 13 v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~ 57 (251)
T COG0396 13 VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE 57 (251)
T ss_pred ecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce
Confidence 445 49999999999999999999999999999999999997776
No 418
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.21 E-value=1.2e-11 Score=110.02 Aligned_cols=49 Identities=33% Similarity=0.539 Sum_probs=43.0
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+++++.+|+++||+|++||++||+|+||||||||+++|+|+..| +++|+
T Consensus 16 ~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i 66 (306)
T PRK13537 16 RYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66 (306)
T ss_pred EECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 45567899999999999999999999999999999999999554 46655
No 419
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.21 E-value=1.3e-11 Score=103.33 Aligned_cols=48 Identities=38% Similarity=0.601 Sum_probs=41.5
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++.+.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~ 60 (204)
T PRK13538 11 RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 (204)
T ss_pred ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 345679999999999999999999999999999999999844 346654
No 420
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.3e-11 Score=107.12 Aligned_cols=48 Identities=40% Similarity=0.650 Sum_probs=41.7
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 11 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (255)
T PRK11248 11 YGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 (255)
T ss_pred eCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 345679999999999999999999999999999999999954 356654
No 421
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.21 E-value=1.2e-11 Score=105.91 Aligned_cols=46 Identities=41% Similarity=0.596 Sum_probs=40.6
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence 46799999999999999999999999999999999999543 46544
No 422
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.21 E-value=1.3e-11 Score=104.96 Aligned_cols=48 Identities=35% Similarity=0.562 Sum_probs=41.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++.+.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++|+
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (230)
T TIGR03410 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59 (230)
T ss_pred eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 3456799999999999999999999999999999999999543 56655
No 423
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.21 E-value=1.4e-11 Score=102.89 Aligned_cols=48 Identities=33% Similarity=0.562 Sum_probs=41.4
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||++||+|+||||||||+++|+|+.. .+++++
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (201)
T cd03231 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLL 59 (201)
T ss_pred eCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 345679999999999999999999999999999999999954 345543
No 424
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.21 E-value=1.4e-11 Score=103.91 Aligned_cols=45 Identities=29% Similarity=0.525 Sum_probs=40.2
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 62 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF 62 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 4699999999999999999999999999999999999543 56655
No 425
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.21 E-value=1.4e-11 Score=104.79 Aligned_cols=48 Identities=42% Similarity=0.606 Sum_probs=42.0
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc--ccchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--ILRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~--~~~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+. ..+++|+
T Consensus 17 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 66 (225)
T PRK10247 17 AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF 66 (225)
T ss_pred eCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEE
Confidence 44567999999999999999999999999999999999984 4456654
No 426
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.21 E-value=1.5e-11 Score=103.17 Aligned_cols=48 Identities=29% Similarity=0.491 Sum_probs=41.5
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++.+.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 12 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (207)
T PRK13539 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL 61 (207)
T ss_pred ECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 345679999999999999999999999999999999999944 356654
No 427
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.20 E-value=1.5e-11 Score=102.98 Aligned_cols=48 Identities=29% Similarity=0.554 Sum_probs=41.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 10 ~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (208)
T cd03268 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59 (208)
T ss_pred ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 345679999999999999999999999999999999999843 456655
No 428
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.20 E-value=1.4e-11 Score=111.17 Aligned_cols=46 Identities=30% Similarity=0.513 Sum_probs=41.2
Q ss_pred hcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 178 ~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
...++++.+|+++||+|.+||++||+|+||||||||+++|+|+..|
T Consensus 48 ~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p 93 (340)
T PRK13536 48 SKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP 93 (340)
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3355677899999999999999999999999999999999998554
No 429
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.20 E-value=1.2e-11 Score=111.35 Aligned_cols=51 Identities=29% Similarity=0.619 Sum_probs=44.4
Q ss_pred hcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc--hhhh
Q psy310 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR--QLWL 228 (240)
Q Consensus 178 ~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~--~~~~ 228 (240)
.+.+++..+++|+||+|++||+++|+||+|||||||||+|+||-.|+ +|++
T Consensus 12 ~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l 64 (352)
T COG3842 12 SKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILL 64 (352)
T ss_pred eeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 34567789999999999999999999999999999999999995554 5543
No 430
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=1.7e-11 Score=100.13 Aligned_cols=47 Identities=34% Similarity=0.577 Sum_probs=40.9
Q ss_pred ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc--ccchhhh
Q psy310 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--ILRQLWL 228 (240)
Q Consensus 182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~--~~~~~~~ 228 (240)
+++.+|+++||+|.+||+++|+|+||||||||+++|+|+. ..+++|+
T Consensus 11 ~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 59 (173)
T cd03230 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV 59 (173)
T ss_pred CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 3457999999999999999999999999999999999984 3456654
No 431
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.20 E-value=1.2e-11 Score=104.95 Aligned_cols=55 Identities=31% Similarity=0.474 Sum_probs=48.0
Q ss_pred HHhcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhhcc
Q psy310 176 AMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWLLE 230 (240)
Q Consensus 176 ~~~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~~~ 230 (240)
.+...++++.|++++||+|++||+++|+|++|||||||+|+|.|+.+| +++|+.-
T Consensus 13 ~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G 69 (263)
T COG1127 13 GVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDG 69 (263)
T ss_pred eeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcC
Confidence 345567899999999999999999999999999999999999999555 4777643
No 432
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.20 E-value=1.6e-11 Score=104.12 Aligned_cols=44 Identities=32% Similarity=0.451 Sum_probs=39.2
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 64 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIF 64 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 79999999999999999999999999999999999954 345544
No 433
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.20 E-value=1.7e-11 Score=104.85 Aligned_cols=48 Identities=40% Similarity=0.604 Sum_probs=42.0
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 60 (236)
T TIGR03864 11 YGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV 60 (236)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 345679999999999999999999999999999999999943 356655
No 434
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=1.7e-11 Score=104.88 Aligned_cols=45 Identities=47% Similarity=0.661 Sum_probs=40.3
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 60 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 6799999999999999999999999999999999999543 56654
No 435
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.2e-11 Score=106.85 Aligned_cols=48 Identities=29% Similarity=0.470 Sum_probs=42.6
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc-------chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL-------RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~-------~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+..+ +++|+
T Consensus 17 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 71 (254)
T PRK14273 17 YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY 71 (254)
T ss_pred eCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEE
Confidence 4456799999999999999999999999999999999999653 67765
No 436
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.20 E-value=1.7e-11 Score=104.96 Aligned_cols=49 Identities=35% Similarity=0.582 Sum_probs=42.5
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
.+..+.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~ 80 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 3456789999999999999999999999999999999999844 356654
No 437
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.20 E-value=1.7e-11 Score=103.35 Aligned_cols=44 Identities=34% Similarity=0.521 Sum_probs=39.6
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++|+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV 64 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 799999999999999999999999999999999999543 45655
No 438
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.20 E-value=1.5e-11 Score=104.36 Aligned_cols=41 Identities=46% Similarity=0.728 Sum_probs=38.1
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
++.+.+|+++||+|.+||+++|+|+||||||||+++|+|+.
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 10 YGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34567999999999999999999999999999999999986
No 439
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=1.8e-11 Score=104.38 Aligned_cols=43 Identities=42% Similarity=0.569 Sum_probs=38.8
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW 227 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~ 227 (240)
.+|+++||+|++||+++|+|+||||||||+++|+|+..+ ++++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 63 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 799999999999999999999999999999999999544 4553
No 440
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.7e-11 Score=105.00 Aligned_cols=48 Identities=27% Similarity=0.535 Sum_probs=41.4
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 13 ~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (241)
T PRK10895 13 YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII 62 (241)
T ss_pred eCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 4456799999999999999999999999999999999998543 45543
No 441
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.19 E-value=1.7e-11 Score=106.07 Aligned_cols=43 Identities=35% Similarity=0.665 Sum_probs=39.0
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
+.++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+
T Consensus 14 ~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p 56 (251)
T PRK09544 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP 56 (251)
T ss_pred ECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4456799999999999999999999999999999999998543
No 442
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.19 E-value=1.3e-11 Score=107.13 Aligned_cols=48 Identities=38% Similarity=0.602 Sum_probs=42.8
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc-----chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL-----RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~-----~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++|+
T Consensus 14 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~ 66 (262)
T PRK09984 14 FNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIEL 66 (262)
T ss_pred eCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEE
Confidence 3456799999999999999999999999999999999999654 57766
No 443
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.19 E-value=1.8e-11 Score=102.83 Aligned_cols=45 Identities=31% Similarity=0.553 Sum_probs=40.3
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 579999999999999999999999999999999999944 356654
No 444
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.19 E-value=1.8e-11 Score=108.77 Aligned_cols=49 Identities=29% Similarity=0.481 Sum_probs=42.3
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
.++++.+|+++||+|.+||++||+|+||||||||+++|+|+.. .+++|+
T Consensus 13 ~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 63 (303)
T TIGR01288 13 SYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63 (303)
T ss_pred EeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3455679999999999999999999999999999999999854 356654
No 445
>PRK10908 cell division protein FtsE; Provisional
Probab=99.19 E-value=1.9e-11 Score=103.44 Aligned_cols=46 Identities=37% Similarity=0.702 Sum_probs=41.3
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 4679999999999999999999999999999999999954 467765
No 446
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.19 E-value=2.1e-11 Score=100.19 Aligned_cols=48 Identities=40% Similarity=0.644 Sum_probs=41.2
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 9 ~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~ 58 (180)
T cd03214 9 YGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58 (180)
T ss_pred ECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 3446799999999999999999999999999999999998543 45544
No 447
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.4e-11 Score=106.68 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=42.5
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~ 68 (258)
T PRK14241 14 YGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL 68 (258)
T ss_pred ECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEE
Confidence 445679999999999999999999999999999999999964 467765
No 448
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=1.4e-11 Score=103.15 Aligned_cols=46 Identities=33% Similarity=0.511 Sum_probs=41.4
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-----cchhhh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-----LRQLWL 228 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-----~~~~~~ 228 (240)
++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i 69 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY 69 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEE
Confidence 5679999999999999999999999999999999999965 456654
No 449
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.5e-11 Score=106.22 Aligned_cols=48 Identities=31% Similarity=0.515 Sum_probs=41.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc-------ccchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-------ILRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~-------~~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+. ..+++|+
T Consensus 16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 16 YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred ECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 44567999999999999999999999999999999999983 3467765
No 450
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.5e-11 Score=106.18 Aligned_cols=48 Identities=31% Similarity=0.457 Sum_probs=42.6
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~ 228 (240)
++.+.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~ 68 (253)
T PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL 68 (253)
T ss_pred eCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 345679999999999999999999999999999999999954 467766
No 451
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.19 E-value=2.3e-11 Score=96.73 Aligned_cols=47 Identities=32% Similarity=0.440 Sum_probs=40.9
Q ss_pred ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
.+..+++++||++++||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 11 ~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 59 (144)
T cd03221 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59 (144)
T ss_pred CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE
Confidence 34579999999999999999999999999999999999844 456654
No 452
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.19 E-value=1.9e-11 Score=106.22 Aligned_cols=48 Identities=35% Similarity=0.609 Sum_probs=41.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 22 ~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 71 (257)
T PRK11247 22 YGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71 (257)
T ss_pred ECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 445679999999999999999999999999999999999854 356654
No 453
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.19 E-value=2e-11 Score=105.07 Aligned_cols=48 Identities=33% Similarity=0.610 Sum_probs=41.4
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (250)
T PRK11264 13 FHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV 62 (250)
T ss_pred ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 445679999999999999999999999999999999999854 345543
No 454
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=2.3e-11 Score=106.26 Aligned_cols=52 Identities=31% Similarity=0.429 Sum_probs=44.5
Q ss_pred HhcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 177 ~~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+...++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++|+
T Consensus 30 ~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i 83 (269)
T cd03294 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI 83 (269)
T ss_pred hhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 34456778899999999999999999999999999999999999544 45554
No 455
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=2e-11 Score=106.28 Aligned_cols=47 Identities=30% Similarity=0.516 Sum_probs=40.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW 227 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~ 227 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+..+ ++++
T Consensus 21 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 69 (265)
T PRK10575 21 VPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69 (265)
T ss_pred ECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE
Confidence 4456899999999999999999999999999999999999543 4553
No 456
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.18 E-value=2.2e-11 Score=106.37 Aligned_cols=48 Identities=35% Similarity=0.595 Sum_probs=42.2
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 17 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (269)
T PRK11831 17 RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF 66 (269)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 455679999999999999999999999999999999999954 456665
No 457
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.18 E-value=2.2e-11 Score=103.45 Aligned_cols=44 Identities=43% Similarity=0.597 Sum_probs=39.1
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~ 69 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL 69 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEE
Confidence 59999999999999999999999999999999999944 345543
No 458
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.18 E-value=2.2e-11 Score=104.26 Aligned_cols=48 Identities=31% Similarity=0.535 Sum_probs=42.0
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (240)
T PRK09493 11 FGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60 (240)
T ss_pred ECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 345679999999999999999999999999999999999944 456665
No 459
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.7e-11 Score=105.63 Aligned_cols=48 Identities=31% Similarity=0.470 Sum_probs=41.8
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 67 (250)
T PRK14240 13 YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLL 67 (250)
T ss_pred ECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 345679999999999999999999999999999999999743 367755
No 460
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.18 E-value=2.3e-11 Score=102.75 Aligned_cols=45 Identities=42% Similarity=0.643 Sum_probs=40.2
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 64 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF 64 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 469999999999999999999999999999999999844 456655
No 461
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.18 E-value=2.4e-11 Score=102.51 Aligned_cols=49 Identities=29% Similarity=0.458 Sum_probs=42.1
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
.++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 20 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 70 (214)
T PRK13543 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI 70 (214)
T ss_pred ecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEE
Confidence 3445679999999999999999999999999999999999843 356654
No 462
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=2.3e-11 Score=104.03 Aligned_cols=48 Identities=31% Similarity=0.475 Sum_probs=41.0
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++.+.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 15 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 64 (237)
T PRK11614 15 YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 64 (237)
T ss_pred eCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 345679999999999999999999999999999999999854 345543
No 463
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.7e-11 Score=106.97 Aligned_cols=48 Identities=35% Similarity=0.427 Sum_probs=42.5
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+.. -+++|+
T Consensus 29 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~ 83 (267)
T PRK14235 29 YGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL 83 (267)
T ss_pred ECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE
Confidence 445679999999999999999999999999999999999854 467765
No 464
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=2.4e-11 Score=104.30 Aligned_cols=48 Identities=35% Similarity=0.565 Sum_probs=41.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 13 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 62 (241)
T PRK14250 13 SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62 (241)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 345679999999999999999999999999999999999843 456665
No 465
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.18 E-value=2.4e-11 Score=104.82 Aligned_cols=48 Identities=35% Similarity=0.342 Sum_probs=41.5
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 13 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (253)
T TIGR02323 13 YGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62 (253)
T ss_pred eCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 3456799999999999999999999999999999999999544 45654
No 466
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=2.4e-11 Score=103.70 Aligned_cols=45 Identities=40% Similarity=0.622 Sum_probs=40.0
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
+.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 68 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF 68 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 469999999999999999999999999999999999943 456654
No 467
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=2.4e-11 Score=104.21 Aligned_cols=48 Identities=31% Similarity=0.412 Sum_probs=42.3
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc--ccchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--ILRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~--~~~~~~~ 228 (240)
+..+.+|+++||+|.+||+++|+|+||||||||+++|+|+. ..+++|+
T Consensus 12 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (242)
T PRK11124 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61 (242)
T ss_pred ECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 34567999999999999999999999999999999999995 4467765
No 468
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.18 E-value=2.4e-11 Score=104.11 Aligned_cols=48 Identities=31% Similarity=0.542 Sum_probs=41.7
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 12 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 61 (242)
T TIGR03411 12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLF 61 (242)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 345679999999999999999999999999999999999843 356655
No 469
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.18 E-value=2.5e-11 Score=105.21 Aligned_cols=48 Identities=33% Similarity=0.414 Sum_probs=42.0
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (258)
T PRK11701 16 YGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHY 65 (258)
T ss_pred cCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 445679999999999999999999999999999999999954 356655
No 470
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.18 E-value=2.2e-11 Score=103.17 Aligned_cols=43 Identities=47% Similarity=0.623 Sum_probs=40.0
Q ss_pred ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224 (240)
Q Consensus 182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~ 224 (240)
+++.+|++|+|.|.+||+|||||++|||||||+|+|+|+..++
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t 57 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT 57 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 6788999999999999999999999999999999999985544
No 471
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=2.1e-11 Score=106.48 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=41.5
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (271)
T PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60 (271)
T ss_pred cCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEE
Confidence 3456799999999999999999999999999999999998543 45544
No 472
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.17 E-value=2.4e-11 Score=104.54 Aligned_cols=48 Identities=35% Similarity=0.507 Sum_probs=42.1
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~ 65 (247)
T TIGR00972 11 YGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF 65 (247)
T ss_pred ECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE
Confidence 345579999999999999999999999999999999999954 457765
No 473
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.17 E-value=2.5e-11 Score=104.71 Aligned_cols=48 Identities=35% Similarity=0.502 Sum_probs=41.7
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (252)
T TIGR03005 10 FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV 59 (252)
T ss_pred eCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 345679999999999999999999999999999999999854 356654
No 474
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=2.4e-11 Score=107.12 Aligned_cols=45 Identities=31% Similarity=0.543 Sum_probs=39.9
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+.+|+++||+|.+||++||+|+||||||||+++|+|+..+ +++++
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~ 66 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIII 66 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Confidence 4699999999999999999999999999999999999544 45544
No 475
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=2.1e-11 Score=105.14 Aligned_cols=48 Identities=33% Similarity=0.452 Sum_probs=42.1
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~ 228 (240)
++.+.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 14 ~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i 68 (251)
T PRK14251 14 YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKF 68 (251)
T ss_pred ECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEE
Confidence 445679999999999999999999999999999999999954 466654
No 476
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=2.9e-11 Score=103.72 Aligned_cols=45 Identities=22% Similarity=0.527 Sum_probs=40.3
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++|+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 5799999999999999999999999999999999999543 56655
No 477
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=2.8e-11 Score=104.66 Aligned_cols=48 Identities=38% Similarity=0.587 Sum_probs=41.5
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (255)
T PRK11231 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61 (255)
T ss_pred ECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEE
Confidence 455689999999999999999999999999999999999843 345544
No 478
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.17 E-value=3.1e-11 Score=98.06 Aligned_cols=40 Identities=38% Similarity=0.611 Sum_probs=37.4
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+..+
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5799999999999999999999999999999999999543
No 479
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.16 E-value=2.3e-11 Score=104.80 Aligned_cols=48 Identities=38% Similarity=0.679 Sum_probs=41.5
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC----cccchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY----KILRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~----~~~~~~~~ 228 (240)
++++.+|+++||+|++||++||+|+||||||||+++|+|+ ...+++|+
T Consensus 17 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~ 68 (252)
T CHL00131 17 VNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILF 68 (252)
T ss_pred eCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEE
Confidence 3456799999999999999999999999999999999997 23466655
No 480
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=2.8e-11 Score=104.50 Aligned_cols=48 Identities=31% Similarity=0.543 Sum_probs=41.5
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 15 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (255)
T PRK11300 15 FGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL 64 (255)
T ss_pred ECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEE
Confidence 4456799999999999999999999999999999999999443 45544
No 481
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.16 E-value=3e-11 Score=105.87 Aligned_cols=43 Identities=42% Similarity=0.618 Sum_probs=39.2
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
+.++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p 53 (272)
T PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTG 53 (272)
T ss_pred ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4456799999999999999999999999999999999998543
No 482
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.16 E-value=3e-11 Score=104.81 Aligned_cols=48 Identities=48% Similarity=0.690 Sum_probs=41.5
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~ 61 (258)
T PRK13548 12 LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61 (258)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 445679999999999999999999999999999999999843 456644
No 483
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.16 E-value=3e-11 Score=107.20 Aligned_cols=48 Identities=33% Similarity=0.535 Sum_probs=41.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||++||+|+||||||||+++|+|+.. .+++|+
T Consensus 12 ~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i 61 (301)
T TIGR03522 12 YGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61 (301)
T ss_pred ECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 456789999999999999999999999999999999999943 445654
No 484
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.16 E-value=3.3e-11 Score=102.11 Aligned_cols=48 Identities=29% Similarity=0.527 Sum_probs=41.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc--ccchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--ILRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~--~~~~~~~ 228 (240)
+.++.+|+++||+|++||+++|+|+||||||||+++|+|+. ..+++|+
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (223)
T TIGR03740 10 FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIF 59 (223)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 34567999999999999999999999999999999999984 4456665
No 485
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=3.2e-11 Score=98.31 Aligned_cols=44 Identities=43% Similarity=0.632 Sum_probs=39.2
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~ 61 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILI 61 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEE
Confidence 69999999999999999999999999999999999944 345544
No 486
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.16 E-value=2.5e-11 Score=105.04 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=41.6
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc------chhhh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL------RQLWL 228 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~------~~~~~ 228 (240)
++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++|+
T Consensus 15 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~ 66 (254)
T PRK10418 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLL 66 (254)
T ss_pred ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEE
Confidence 45799999999999999999999999999999999999654 77765
No 487
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=2.5e-11 Score=104.71 Aligned_cols=48 Identities=33% Similarity=0.488 Sum_probs=41.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~ 228 (240)
+.++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~ 68 (251)
T PRK14270 14 YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLL 68 (251)
T ss_pred ECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEE
Confidence 345679999999999999999999999999999999999854 367755
No 488
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=2.5e-11 Score=104.62 Aligned_cols=48 Identities=33% Similarity=0.560 Sum_probs=42.0
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 13 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 67 (250)
T PRK14247 13 FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL 67 (250)
T ss_pred ECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE
Confidence 345679999999999999999999999999999999999954 466654
No 489
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=3.1e-11 Score=106.44 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=39.8
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+..| +++++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~ 66 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITI 66 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 4699999999999999999999999999999999999554 45543
No 490
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.7e-11 Score=101.72 Aligned_cols=48 Identities=31% Similarity=0.476 Sum_probs=42.3
Q ss_pred hcccccce-eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccch
Q psy310 178 YNRIHEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ 225 (240)
Q Consensus 178 ~~~~~~~~-il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~ 225 (240)
.+++++++ +++||||.++.||++||+|+|||||||++|+|++|.+|+|
T Consensus 8 ~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~ 56 (245)
T COG4555 8 TKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS 56 (245)
T ss_pred hhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC
Confidence 34455555 8999999999999999999999999999999999988774
No 491
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.15 E-value=2.6e-11 Score=105.75 Aligned_cols=48 Identities=31% Similarity=0.490 Sum_probs=42.7
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 30 ~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (267)
T PRK14237 30 YGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY 84 (267)
T ss_pred ECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEE
Confidence 456789999999999999999999999999999999999964 467755
No 492
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.15 E-value=3.6e-11 Score=101.90 Aligned_cols=45 Identities=42% Similarity=0.571 Sum_probs=40.4
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
+.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 67 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV 67 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 469999999999999999999999999999999999954 467755
No 493
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=3.2e-11 Score=106.26 Aligned_cols=45 Identities=24% Similarity=0.416 Sum_probs=39.9
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
+.+|+++||+|.+||++||+|+||||||||+++|+|+.. .+++++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~ 66 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV 66 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 469999999999999999999999999999999999944 456654
No 494
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.5e-11 Score=104.29 Aligned_cols=48 Identities=35% Similarity=0.497 Sum_probs=42.2
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~ 228 (240)
++++.+|+++||+|.+||++||+|+||||||||+++|+|+.. .+++|+
T Consensus 22 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~ 76 (258)
T PRK14268 22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSI 76 (258)
T ss_pred eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEE
Confidence 445679999999999999999999999999999999999854 466655
No 495
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.15 E-value=5.8e-11 Score=101.74 Aligned_cols=134 Identities=16% Similarity=0.224 Sum_probs=73.9
Q ss_pred cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC---------------CCCCcc--------EEEECCccC
Q psy310 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK---------------TSGTEG--------SITINGHER 94 (240)
Q Consensus 38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~---------------~~~~~G--------~V~v~g~~~ 94 (240)
.|++..++++++ |++++|+||||||||||+++|.+++ ..+.+| +|.+.+.+.
T Consensus 11 sy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 11 SYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred CcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCC
Confidence 455667777776 8899999999999999999998431 112233 444444221
Q ss_pred C------chhhhhhceEEcccccccc-cccHHHHHHHHHHHhcCCCccH-HHHHHHHHHhhhcCCcchhhhhccCCCCCc
Q psy310 95 N------LSQFRKLSCYIMQDNQLHA-NLTVEEAMNVATALKLGKDLTK-AARKDVVRTLFYRSDTNHAQRCFLSGPWGT 166 (240)
Q Consensus 95 ~------~~~~~~~~g~v~Q~~~~~~-~ltv~e~l~~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 166 (240)
. ....++.+++++|+..+.. ..+..+...+............ ...+..+..+. .+...........+++
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~---~l~~~~~~~~~~lS~G 162 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLT---NMKQDEQQEMQQLSGG 162 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhh---hccccccccccccCHH
Confidence 1 0123455788888777665 3466655544332222111000 00011111121 1222222344457788
Q ss_pred hhhHHHHHHHHhc
Q psy310 167 FESSVLLALAMYN 179 (240)
Q Consensus 167 ~~~~~~~~~~~~~ 179 (240)
+++++.++++++.
T Consensus 163 ~~~r~~la~~l~~ 175 (243)
T cd03272 163 QKSLVALALIFAI 175 (243)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999998863
No 496
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3e-11 Score=104.25 Aligned_cols=48 Identities=38% Similarity=0.606 Sum_probs=42.7
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc-------chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL-------RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~-------~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+ +++|+
T Consensus 14 ~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 68 (251)
T PRK14249 14 YHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLL 68 (251)
T ss_pred ECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEE
Confidence 3456799999999999999999999999999999999999665 67766
No 497
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=3.6e-11 Score=105.34 Aligned_cols=46 Identities=28% Similarity=0.429 Sum_probs=40.6
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++.+|+++||+|++||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (274)
T PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61 (274)
T ss_pred CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 3569999999999999999999999999999999999944 456655
No 498
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.7e-11 Score=104.64 Aligned_cols=48 Identities=35% Similarity=0.639 Sum_probs=41.6
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++++
T Consensus 17 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 66 (265)
T PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL 66 (265)
T ss_pred ECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEE
Confidence 445679999999999999999999999999999999999854 345544
No 499
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.9e-11 Score=104.88 Aligned_cols=41 Identities=37% Similarity=0.592 Sum_probs=38.0
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 59 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL 59 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46799999999999999999999999999999999999544
No 500
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.14 E-value=4e-11 Score=104.37 Aligned_cols=46 Identities=33% Similarity=0.503 Sum_probs=40.7
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
++.+|+++||+|.+||+++|+|+||||||||+++|+|+.. .+++|+
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 70 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF 70 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 3679999999999999999999999999999999999954 346655
Done!