Query psy310
Match_columns 240
No_of_seqs 183 out of 2458
Neff 7.7
Searched_HMMs 29240
Date Sat Aug 17 01:40:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_A Maltose/maltodextrin im 99.9 3.5E-26 1.2E-30 207.1 15.5 144 33-180 7-151 (381)
2 3fvq_A Fe(3+) IONS import ATP- 99.9 1.5E-26 5E-31 208.1 11.7 145 32-180 7-156 (359)
3 1yqt_A RNAse L inhibitor; ATP- 99.9 1.2E-26 4.2E-31 219.1 10.1 92 29-122 21-130 (538)
4 3tif_A Uncharacterized ABC tra 99.9 1.1E-25 3.7E-30 191.7 14.6 147 33-180 5-163 (235)
5 2pcj_A ABC transporter, lipopr 99.9 1.4E-25 4.8E-30 189.7 14.9 144 33-180 8-158 (224)
6 3bk7_A ABC transporter ATP-bin 99.9 1.2E-26 4.1E-31 221.8 9.3 90 32-123 94-201 (607)
7 1z47_A CYSA, putative ABC-tran 99.9 2.1E-25 7E-30 200.6 16.3 145 32-180 17-163 (355)
8 3tui_C Methionine import ATP-b 99.9 1.5E-25 5.2E-30 201.8 15.5 145 32-180 27-181 (366)
9 1b0u_A Histidine permease; ABC 99.9 2.3E-25 8E-30 192.6 15.9 146 32-180 9-171 (262)
10 2olj_A Amino acid ABC transpor 99.9 2.8E-25 9.5E-30 192.3 16.0 147 31-180 26-177 (263)
11 1vpl_A ABC transporter, ATP-bi 99.9 2.8E-25 9.7E-30 191.5 15.9 144 33-180 19-164 (256)
12 3gfo_A Cobalt import ATP-bindi 99.9 2.9E-25 9.8E-30 193.4 15.5 168 32-220 10-189 (275)
13 2iw3_A Elongation factor 3A; a 99.9 9.2E-26 3.2E-30 223.9 13.3 82 30-123 436-518 (986)
14 2it1_A 362AA long hypothetical 99.9 2.7E-25 9.4E-30 200.3 15.2 144 33-180 7-151 (362)
15 1g29_1 MALK, maltose transport 99.9 2.7E-25 9.1E-30 201.1 15.1 144 33-180 7-157 (372)
16 1v43_A Sugar-binding transport 99.9 3.3E-25 1.1E-29 200.4 14.3 146 31-180 13-159 (372)
17 2yyz_A Sugar ABC transporter, 99.9 2.1E-25 7.1E-30 200.8 12.5 144 33-180 7-151 (359)
18 1oxx_K GLCV, glucose, ABC tran 99.9 1.9E-25 6.5E-30 200.8 11.6 144 33-180 7-158 (353)
19 4g1u_C Hemin import ATP-bindin 99.9 3.5E-25 1.2E-29 192.0 12.7 173 31-220 13-193 (266)
20 1g6h_A High-affinity branched- 99.9 4E-25 1.4E-29 190.5 12.2 148 32-180 10-171 (257)
21 1sgw_A Putative ABC transporte 99.9 8.9E-25 3E-29 183.8 12.9 161 33-220 14-179 (214)
22 3d31_A Sulfate/molybdate ABC t 99.9 1.5E-24 5.1E-29 194.6 15.1 140 33-180 5-145 (348)
23 3g5u_A MCG1178, multidrug resi 99.9 7.7E-25 2.6E-29 224.4 12.6 91 32-124 390-486 (1284)
24 1ji0_A ABC transporter; ATP bi 99.9 2.1E-24 7E-29 184.3 13.1 143 33-180 10-157 (240)
25 2ihy_A ABC transporter, ATP-bi 99.9 2.5E-24 8.6E-29 187.8 12.4 147 32-180 24-179 (279)
26 2d2e_A SUFC protein; ABC-ATPas 99.9 5.4E-24 1.9E-28 182.7 13.5 148 33-180 7-161 (250)
27 2yz2_A Putative ABC transporte 99.9 3.6E-24 1.2E-28 185.5 11.3 143 33-180 6-156 (266)
28 3ux8_A Excinuclease ABC, A sub 99.9 1.6E-24 5.6E-29 209.2 9.4 33 186-218 337-369 (670)
29 2ixe_A Antigen peptide transpo 99.9 7.4E-24 2.5E-28 184.0 10.1 146 31-180 18-174 (271)
30 2zu0_C Probable ATP-dependent 99.9 5.9E-23 2E-27 178.0 15.1 149 32-180 23-182 (267)
31 2nq2_C Hypothetical ABC transp 99.9 4.4E-23 1.5E-27 177.5 13.1 137 33-180 8-146 (253)
32 2onk_A Molybdate/tungstate ABC 99.9 2E-23 6.9E-28 178.3 10.5 139 33-180 5-144 (240)
33 2ff7_A Alpha-hemolysin translo 99.9 3.6E-23 1.2E-27 177.4 10.1 137 33-180 11-163 (247)
34 2qi9_C Vitamin B12 import ATP- 99.9 7E-23 2.4E-27 175.9 11.0 129 43-181 14-145 (249)
35 3j16_B RLI1P; ribosome recycli 99.9 2.9E-23 9.8E-28 198.3 9.5 56 30-87 78-134 (608)
36 3ozx_A RNAse L inhibitor; ATP 99.9 2.1E-23 7.2E-28 196.9 7.7 38 186-223 283-320 (538)
37 3nh6_A ATP-binding cassette SU 99.9 5.2E-23 1.8E-27 181.6 9.4 143 31-180 55-208 (306)
38 1mv5_A LMRA, multidrug resista 99.9 1E-22 3.5E-27 174.0 9.3 138 33-180 5-157 (243)
39 2pjz_A Hypothetical protein ST 99.9 1.9E-22 6.4E-27 174.6 10.7 136 33-180 5-146 (263)
40 3gd7_A Fusion complex of cysti 99.9 2.7E-22 9.1E-27 182.4 9.0 136 31-179 21-172 (390)
41 2pze_A Cystic fibrosis transme 99.9 2.2E-21 7.6E-26 164.4 11.7 131 32-180 9-148 (229)
42 2ghi_A Transport protein; mult 99.9 3E-21 1E-25 166.6 11.7 137 32-180 20-173 (260)
43 2cbz_A Multidrug resistance-as 99.8 8E-21 2.7E-25 161.8 11.1 130 33-180 7-145 (237)
44 3b60_A Lipid A export ATP-bind 99.8 3.3E-20 1.1E-24 176.6 12.4 140 31-180 343-498 (582)
45 3b5x_A Lipid A export ATP-bind 99.8 3.4E-20 1.1E-24 176.5 11.7 140 31-180 343-498 (582)
46 3qf4_A ABC transporter, ATP-bi 99.8 7.9E-21 2.7E-25 181.1 6.7 143 31-180 343-497 (587)
47 4a82_A Cystic fibrosis transme 99.8 1.1E-20 3.9E-25 179.6 7.0 143 31-180 341-495 (578)
48 2yl4_A ATP-binding cassette SU 99.8 7E-20 2.4E-24 174.7 12.2 141 32-180 344-501 (595)
49 3qf4_B Uncharacterized ABC tra 99.8 4.5E-20 1.5E-24 176.2 8.0 139 31-180 356-509 (598)
50 2bbs_A Cystic fibrosis transme 99.8 2.1E-19 7.2E-24 157.4 10.1 123 33-180 44-177 (290)
51 4f4c_A Multidrug resistance pr 99.7 1.4E-18 4.7E-23 178.6 8.5 141 31-180 1078-1235(1321)
52 4f4c_A Multidrug resistance pr 99.7 5.6E-18 1.9E-22 174.2 12.0 143 31-180 417-572 (1321)
53 3bk7_A ABC transporter ATP-bin 99.7 2.3E-17 7.9E-22 157.6 12.0 130 32-180 360-489 (607)
54 1yqt_A RNAse L inhibitor; ATP- 99.7 3.3E-17 1.1E-21 154.6 12.6 129 33-180 291-419 (538)
55 3g5u_A MCG1178, multidrug resi 99.7 1.2E-17 4.1E-22 171.3 7.5 144 32-180 1033-1189(1284)
56 3ozx_A RNAse L inhibitor; ATP 99.7 9.3E-17 3.2E-21 151.5 11.6 131 33-180 273-403 (538)
57 1tf7_A KAIC; homohexamer, hexa 99.6 5.7E-18 2E-22 159.2 -1.7 77 34-111 17-98 (525)
58 2iw3_A Elongation factor 3A; a 99.6 2E-15 6.7E-20 150.2 9.3 59 32-91 674-734 (986)
59 1htw_A HI0065; nucleotide-bind 99.6 1.5E-17 5.1E-22 133.3 -5.9 86 33-123 11-96 (158)
60 3j16_B RLI1P; ribosome recycli 99.6 9.4E-15 3.2E-19 139.6 9.9 129 34-180 351-485 (608)
61 1z6g_A Guanylate kinase; struc 99.4 3.2E-14 1.1E-18 119.1 0.8 69 42-115 10-82 (218)
62 2dpy_A FLII, flagellum-specifi 99.4 1.2E-13 4.3E-18 127.1 2.1 95 29-125 131-238 (438)
63 2jeo_A Uridine-cytidine kinase 99.3 1.9E-13 6.5E-18 116.0 2.4 74 38-124 8-81 (245)
64 2pcj_A ABC transporter, lipopr 99.3 9.1E-13 3.1E-17 110.9 5.2 48 181-228 14-63 (224)
65 4g1u_C Hemin import ATP-bindin 99.3 1.1E-12 3.7E-17 113.3 5.5 49 180-228 20-70 (266)
66 3b9q_A Chloroplast SRP recepto 99.3 3.3E-13 1.1E-17 118.6 1.9 81 45-126 90-180 (302)
67 1ji0_A ABC transporter; ATP bi 99.3 1.4E-12 4.8E-17 110.9 5.4 48 181-228 16-65 (240)
68 1g6h_A High-affinity branched- 99.3 1.2E-12 4.1E-17 112.4 5.0 48 181-228 17-66 (257)
69 3ux8_A Excinuclease ABC, A sub 99.3 3E-12 1E-16 123.5 8.3 36 41-76 334-369 (670)
70 1b0u_A Histidine permease; ABC 99.3 1.3E-12 4.5E-17 112.5 5.2 48 181-228 16-65 (262)
71 2npi_A Protein CLP1; CLP1-PCF1 99.3 6E-15 2.1E-19 136.7 -10.4 69 47-122 130-203 (460)
72 3tif_A Uncharacterized ABC tra 99.3 1.5E-12 5.2E-17 110.3 5.1 45 184-228 18-64 (235)
73 2olj_A Amino acid ABC transpor 99.3 1.6E-12 5.4E-17 112.2 5.2 49 180-228 33-83 (263)
74 2ihy_A ABC transporter, ATP-bi 99.3 1.8E-12 6.2E-17 112.7 5.4 49 180-228 30-80 (279)
75 1vpl_A ABC transporter, ATP-bi 99.3 1.8E-12 6E-17 111.4 5.2 48 181-228 25-74 (256)
76 1znw_A Guanylate kinase, GMP k 99.3 4.4E-13 1.5E-17 110.8 0.8 77 41-121 8-84 (207)
77 3b85_A Phosphate starvation-in 99.3 2.6E-14 8.9E-19 119.2 -6.9 67 38-110 9-75 (208)
78 1sgw_A Putative ABC transporte 99.3 2.2E-12 7.6E-17 108.0 4.8 47 181-228 20-68 (214)
79 2pze_A Cystic fibrosis transme 99.3 2.6E-12 9E-17 108.4 5.1 41 183-223 20-60 (229)
80 2zu0_C Probable ATP-dependent 99.3 2.1E-12 7.3E-17 111.5 4.5 49 180-228 29-81 (267)
81 3gfo_A Cobalt import ATP-bindi 99.3 3E-12 1E-16 111.1 5.4 45 184-228 21-67 (275)
82 2ff7_A Alpha-hemolysin translo 99.3 3.1E-12 1.1E-16 109.2 5.4 46 183-228 21-68 (247)
83 2nq2_C Hypothetical ABC transp 99.3 3.3E-12 1.1E-16 109.5 5.3 41 183-223 17-57 (253)
84 1mv5_A LMRA, multidrug resista 99.3 2.9E-12 9.9E-17 109.0 4.8 47 182-228 13-61 (243)
85 2cbz_A Multidrug resistance-as 99.3 3.1E-12 1.1E-16 108.5 4.8 41 183-223 17-57 (237)
86 2d2e_A SUFC protein; ABC-ATPas 99.3 4E-12 1.4E-16 108.7 5.4 48 181-228 13-64 (250)
87 2gza_A Type IV secretion syste 99.2 1.2E-12 4E-17 117.7 1.8 81 45-126 165-249 (361)
88 2ixe_A Antigen peptide transpo 99.2 4.1E-12 1.4E-16 109.9 5.0 45 184-228 32-78 (271)
89 2v9p_A Replication protein E1; 99.2 1.9E-13 6.6E-18 120.3 -3.6 52 33-89 105-156 (305)
90 3fvq_A Fe(3+) IONS import ATP- 99.2 4.5E-12 1.5E-16 113.8 5.0 49 180-228 13-63 (359)
91 2og2_A Putative signal recogni 99.2 1.6E-12 5.6E-17 116.8 2.0 80 46-126 148-237 (359)
92 2yz2_A Putative ABC transporte 99.2 5.6E-12 1.9E-16 108.7 5.1 45 184-228 20-66 (266)
93 1tq4_A IIGP1, interferon-induc 99.2 8.3E-14 2.8E-18 127.3 -7.4 117 41-179 35-173 (413)
94 3rlf_A Maltose/maltodextrin im 99.2 7E-12 2.4E-16 113.3 5.2 49 180-228 12-62 (381)
95 2yhs_A FTSY, cell division pro 99.2 2.6E-12 8.8E-17 119.5 2.1 81 45-126 283-372 (503)
96 2yyz_A Sugar ABC transporter, 99.2 9.7E-12 3.3E-16 111.7 5.2 49 180-228 12-62 (359)
97 2qi9_C Vitamin B12 import ATP- 99.2 9.6E-12 3.3E-16 106.4 4.9 44 185-228 14-58 (249)
98 1z47_A CYSA, putative ABC-tran 99.2 9.8E-12 3.3E-16 111.5 5.1 47 182-228 26-74 (355)
99 3tui_C Methionine import ATP-b 99.2 1E-11 3.5E-16 111.7 5.1 45 184-228 41-87 (366)
100 2it1_A 362AA long hypothetical 99.2 1.2E-11 4E-16 111.3 5.2 49 180-228 12-62 (362)
101 1g29_1 MALK, maltose transport 99.2 1.2E-11 4.2E-16 111.5 5.4 49 180-228 12-62 (372)
102 2ghi_A Transport protein; mult 99.2 1.2E-11 4.1E-16 106.3 4.9 45 184-228 33-78 (260)
103 1v43_A Sugar-binding transport 99.2 1.3E-11 4.3E-16 111.5 5.2 49 180-228 20-70 (372)
104 2bbs_A Cystic fibrosis transme 99.2 1.3E-11 4.6E-16 107.8 4.6 45 183-227 50-96 (290)
105 3nh6_A ATP-binding cassette SU 99.2 1.1E-11 3.8E-16 109.1 3.9 45 183-227 66-112 (306)
106 2pjz_A Hypothetical protein ST 99.2 1.8E-11 6.2E-16 105.5 4.9 44 184-228 18-62 (263)
107 1htw_A HI0065; nucleotide-bind 99.2 4E-12 1.4E-16 101.5 0.5 52 181-232 17-69 (158)
108 1oxx_K GLCV, glucose, ABC tran 99.2 1E-11 3.6E-16 111.3 3.1 48 181-228 13-64 (353)
109 3d31_A Sulfate/molybdate ABC t 99.1 1.4E-11 4.8E-16 110.2 3.8 48 180-228 10-59 (348)
110 3sop_A Neuronal-specific septi 99.1 2.3E-12 7.8E-17 111.5 -1.3 67 57-124 4-70 (270)
111 2qm8_A GTPase/ATPase; G protei 99.1 4.4E-13 1.5E-17 119.5 -6.2 83 32-115 32-121 (337)
112 3euj_A Chromosome partition pr 99.1 8.4E-12 2.9E-16 116.0 2.2 51 42-94 17-67 (483)
113 2rcn_A Probable GTPase ENGC; Y 99.1 3.2E-11 1.1E-15 108.2 5.8 121 45-177 206-328 (358)
114 1rj9_A FTSY, signal recognitio 99.1 2.1E-11 7.3E-16 107.1 4.3 72 54-126 101-181 (304)
115 1s96_A Guanylate kinase, GMP k 99.1 8.6E-12 2.9E-16 104.7 1.2 68 50-118 11-79 (219)
116 1sq5_A Pantothenate kinase; P- 99.1 5.8E-12 2E-16 110.6 -0.4 91 34-128 42-155 (308)
117 2obl_A ESCN; ATPase, hydrolase 99.1 1.4E-11 4.8E-16 110.2 1.6 62 30-93 46-108 (347)
118 2onk_A Molybdate/tungstate ABC 99.1 5.4E-11 1.9E-15 101.1 4.9 42 186-228 14-57 (240)
119 3gd7_A Fusion complex of cysti 99.1 5.5E-11 1.9E-15 107.9 4.8 47 182-228 32-79 (390)
120 3tr0_A Guanylate kinase, GMP k 99.1 2.3E-11 8E-16 99.3 2.1 65 49-118 1-68 (205)
121 2pt7_A CAG-ALFA; ATPase, prote 99.1 1.3E-11 4.5E-16 109.6 0.3 77 43-125 159-236 (330)
122 1z6g_A Guanylate kinase; struc 99.1 3E-11 1E-15 100.9 2.1 45 183-228 9-53 (218)
123 2qag_B Septin-6, protein NEDD5 99.0 1.4E-11 4.9E-16 112.8 -1.6 78 36-120 22-101 (427)
124 4aby_A DNA repair protein RECN 99.0 7.4E-11 2.5E-15 106.9 3.0 74 39-113 45-159 (415)
125 3aez_A Pantothenate kinase; tr 99.0 2.8E-11 9.5E-16 106.8 -0.1 56 52-123 87-142 (312)
126 4gp7_A Metallophosphoesterase; 99.0 1E-10 3.4E-15 94.0 3.2 30 47-76 1-30 (171)
127 2vf7_A UVRA2, excinuclease ABC 99.0 1.1E-10 3.8E-15 114.9 3.5 35 43-77 511-546 (842)
128 2yv5_A YJEQ protein; hydrolase 99.0 7.2E-11 2.5E-15 103.5 1.8 69 51-122 161-240 (302)
129 1zp6_A Hypothetical protein AT 99.0 9.4E-11 3.2E-15 94.7 2.3 69 51-124 5-74 (191)
130 3pih_A Uvrabc system protein A 99.0 2.3E-09 7.9E-14 106.4 12.3 32 41-72 596-627 (916)
131 3e70_C DPA, signal recognition 99.0 8.4E-11 2.9E-15 104.4 1.8 74 52-126 126-208 (328)
132 2qnr_A Septin-2, protein NEDD5 99.0 6.9E-11 2.4E-15 103.6 0.9 80 33-119 2-81 (301)
133 2r6f_A Excinuclease ABC subuni 99.0 8E-10 2.7E-14 109.6 8.4 34 43-76 638-671 (972)
134 3b60_A Lipid A export ATP-bind 99.0 2.8E-10 9.4E-15 108.1 4.7 44 184-227 356-401 (582)
135 3szr_A Interferon-induced GTP- 99.0 5.8E-11 2E-15 113.5 -0.1 75 49-126 42-122 (608)
136 3b5x_A Lipid A export ATP-bind 99.0 3.3E-10 1.1E-14 107.6 4.8 44 184-227 356-401 (582)
137 2yl4_A ATP-binding cassette SU 99.0 2.8E-10 9.6E-15 108.3 4.2 44 184-227 357-402 (595)
138 2eyu_A Twitching motility prot 98.9 3.9E-11 1.3E-15 103.2 -2.3 62 43-108 15-77 (261)
139 2jeo_A Uridine-cytidine kinase 98.9 2.9E-10 1E-14 96.2 3.0 40 181-220 9-48 (245)
140 4a82_A Cystic fibrosis transme 98.9 2.9E-10 1E-14 107.9 3.4 40 184-223 354-393 (578)
141 3lnc_A Guanylate kinase, GMP k 98.9 2.3E-10 8E-15 95.7 2.2 38 42-79 14-52 (231)
142 2ygr_A Uvrabc system protein A 98.9 2.2E-09 7.6E-14 106.8 9.1 33 43-75 656-688 (993)
143 3qf4_B Uncharacterized ABC tra 98.9 4E-10 1.4E-14 107.4 3.6 40 184-223 368-407 (598)
144 3qf4_A ABC transporter, ATP-bi 98.9 4.6E-10 1.6E-14 106.8 3.8 45 183-227 355-401 (587)
145 1u0l_A Probable GTPase ENGC; p 98.9 4.9E-10 1.7E-14 98.0 2.5 60 51-111 165-230 (301)
146 2v9p_A Replication protein E1; 98.9 2.6E-10 8.7E-15 100.3 0.4 42 184-226 113-154 (305)
147 4a74_A DNA repair and recombin 98.9 4.5E-10 1.5E-14 92.9 1.9 60 51-113 21-86 (231)
148 1t9h_A YLOQ, probable GTPase E 98.9 3.3E-10 1.1E-14 99.7 0.9 71 50-122 168-247 (307)
149 4eun_A Thermoresistant glucoki 98.9 6.3E-10 2.2E-14 91.1 2.5 76 44-124 18-95 (200)
150 1p9r_A General secretion pathw 98.8 1.4E-10 4.7E-15 106.2 -2.3 89 34-125 148-258 (418)
151 2ehv_A Hypothetical protein PH 98.8 4.5E-10 1.5E-14 94.0 1.0 60 51-111 26-89 (251)
152 2i3b_A HCR-ntpase, human cance 98.8 2E-10 7E-15 94.1 -1.3 53 55-110 1-54 (189)
153 3b85_A Phosphate starvation-in 98.8 3.5E-10 1.2E-14 94.1 -0.7 37 182-223 11-47 (208)
154 1znw_A Guanylate kinase, GMP k 98.8 1.3E-09 4.5E-14 89.8 2.7 36 184-221 9-44 (207)
155 3asz_A Uridine kinase; cytidin 98.8 2E-09 6.8E-14 88.4 3.6 52 52-123 3-56 (211)
156 1qhl_A Protein (cell division 98.8 1E-10 3.6E-15 98.7 -4.3 59 49-109 22-91 (227)
157 1cr0_A DNA primase/helicase; R 98.8 1.9E-10 6.5E-15 99.7 -3.4 54 41-95 21-75 (296)
158 2oap_1 GSPE-2, type II secreti 98.8 1.5E-09 5.1E-14 101.7 1.5 51 42-93 247-297 (511)
159 2ewv_A Twitching motility prot 98.8 1.7E-09 5.9E-14 97.4 1.7 61 44-108 127-188 (372)
160 3lnc_A Guanylate kinase, GMP k 98.7 2.5E-09 8.6E-14 89.4 2.5 37 185-221 15-52 (231)
161 3c8u_A Fructokinase; YP_612366 98.7 1.9E-09 6.6E-14 88.8 0.5 43 52-94 19-63 (208)
162 1tq4_A IIGP1, interferon-induc 98.7 1.9E-09 6.4E-14 98.5 0.3 41 184-224 36-96 (413)
163 3euj_A Chromosome partition pr 98.7 5E-09 1.7E-13 97.3 3.0 44 184-228 17-62 (483)
164 2bdt_A BH3686; alpha-beta prot 98.7 3.7E-09 1.3E-13 85.4 1.8 63 55-124 2-64 (189)
165 2qag_B Septin-6, protein NEDD5 98.7 3.4E-09 1.2E-13 97.0 1.7 41 181-222 25-67 (427)
166 2bbw_A Adenylate kinase 4, AK4 98.7 1.1E-09 3.6E-14 92.6 -1.6 69 54-124 26-97 (246)
167 2j41_A Guanylate kinase; GMP, 98.7 4.9E-09 1.7E-13 85.4 2.4 35 50-85 1-35 (207)
168 2obl_A ESCN; ATPase, hydrolase 98.7 3.9E-09 1.3E-13 94.3 1.7 41 183-224 58-98 (347)
169 2qag_C Septin-7; cell cycle, c 98.7 3.1E-09 1.1E-13 97.2 0.9 81 32-122 14-96 (418)
170 1lvg_A Guanylate kinase, GMP k 98.6 2.8E-09 9.6E-14 87.5 -0.2 27 53-79 2-28 (198)
171 4e22_A Cytidylate kinase; P-lo 98.6 3.1E-09 1.1E-13 90.4 -0.1 57 53-110 25-96 (252)
172 3kta_A Chromosome segregation 98.6 6.7E-09 2.3E-13 83.3 1.8 33 46-79 18-50 (182)
173 1ye8_A Protein THEP1, hypothet 98.6 3.1E-09 1E-13 86.2 -0.3 48 57-110 2-52 (178)
174 2npi_A Protein CLP1; CLP1-PCF1 98.6 5.6E-09 1.9E-13 96.6 0.8 34 189-222 130-163 (460)
175 2eyu_A Twitching motility prot 98.6 7E-09 2.4E-13 89.1 1.1 42 185-228 15-59 (261)
176 2gza_A Type IV secretion syste 98.6 5.2E-09 1.8E-13 93.8 0.3 38 186-223 164-201 (361)
177 3nwj_A ATSK2; P loop, shikimat 98.6 1.9E-09 6.4E-14 92.2 -3.0 48 31-78 19-71 (250)
178 3b9q_A Chloroplast SRP recepto 98.6 1.5E-08 5.1E-13 88.8 2.7 39 185-223 88-126 (302)
179 2dpy_A FLII, flagellum-specifi 98.6 9E-09 3.1E-13 94.7 1.3 40 183-223 144-183 (438)
180 2pt7_A CAG-ALFA; ATPase, prote 98.6 4.4E-09 1.5E-13 93.3 -0.8 38 186-223 160-197 (330)
181 2f1r_A Molybdopterin-guanine d 98.6 7.2E-09 2.5E-13 83.6 0.5 57 56-113 3-73 (171)
182 3a00_A Guanylate kinase, GMP k 98.6 5.8E-09 2E-13 84.5 -0.5 25 55-79 1-25 (186)
183 3vaa_A Shikimate kinase, SK; s 98.6 2.5E-08 8.6E-13 81.4 3.2 38 41-78 11-48 (199)
184 1pui_A ENGB, probable GTP-bind 98.5 4E-09 1.4E-13 85.9 -1.9 53 33-88 7-63 (210)
185 3uie_A Adenylyl-sulfate kinase 98.5 1.6E-09 5.6E-14 88.6 -4.5 59 34-94 4-64 (200)
186 1lw7_A Transcriptional regulat 98.5 5.8E-09 2E-13 93.4 -1.5 44 45-89 158-207 (365)
187 1lw7_A Transcriptional regulat 98.5 1E-08 3.4E-13 91.8 0.1 38 186-223 157-196 (365)
188 3thx_B DNA mismatch repair pro 98.5 2.8E-08 9.5E-13 98.8 3.2 38 40-77 658-695 (918)
189 1tf7_A KAIC; homohexamer, hexa 98.5 1.4E-08 4.8E-13 95.2 0.9 47 182-228 23-74 (525)
190 3jvv_A Twitching mobility prot 98.5 2.8E-08 9.6E-13 89.0 2.7 73 51-124 119-191 (356)
191 2qm8_A GTPase/ATPase; G protei 98.5 1E-08 3.6E-13 91.1 -0.2 40 183-222 41-80 (337)
192 2x8a_A Nuclear valosin-contain 98.5 3.1E-09 1E-13 91.8 -3.7 66 39-109 30-98 (274)
193 1wb9_A DNA mismatch repair pro 98.5 5.2E-08 1.8E-12 95.7 4.0 38 40-78 593-630 (800)
194 1kgd_A CASK, peripheral plasma 98.5 3.5E-08 1.2E-12 79.5 2.3 37 53-89 3-39 (180)
195 1ypw_A Transitional endoplasmi 98.5 1.8E-07 6.2E-12 92.0 7.6 30 50-79 233-262 (806)
196 2w0m_A SSO2452; RECA, SSPF, un 98.5 7.5E-09 2.6E-13 85.3 -2.1 53 42-95 9-62 (235)
197 4aby_A DNA repair protein RECN 98.5 1.7E-08 5.8E-13 91.3 -0.5 39 181-220 45-83 (415)
198 3thx_A DNA mismatch repair pro 98.5 7.4E-08 2.5E-12 95.9 3.8 36 40-75 647-682 (934)
199 1cr0_A DNA primase/helicase; R 98.4 4.1E-08 1.4E-12 85.0 1.7 53 183-235 21-78 (296)
200 3aez_A Pantothenate kinase; tr 98.4 2.1E-08 7.2E-13 88.3 -0.3 35 189-223 81-116 (312)
201 2ehv_A Hypothetical protein PH 98.4 7.6E-08 2.6E-12 80.3 3.1 28 193-220 26-55 (251)
202 4a74_A DNA repair and recombin 98.4 8.5E-08 2.9E-12 79.0 3.3 28 193-220 21-48 (231)
203 2og2_A Putative signal recogni 98.4 4.7E-08 1.6E-12 87.7 1.7 35 188-222 148-182 (359)
204 2o8b_B DNA mismatch repair pro 98.4 7.1E-08 2.4E-12 97.0 2.9 43 35-78 761-811 (1022)
205 2yhs_A FTSY, cell division pro 98.4 5E-08 1.7E-12 90.7 1.7 42 187-228 283-326 (503)
206 1in4_A RUVB, holliday junction 98.4 1.8E-09 6.3E-14 95.5 -7.9 90 32-123 21-123 (334)
207 1knq_A Gluconate kinase; ALFA/ 98.4 5.9E-08 2E-12 77.2 1.6 54 53-111 6-61 (175)
208 1ewq_A DNA mismatch repair pro 98.4 1.1E-07 3.6E-12 93.1 3.7 70 40-123 564-633 (765)
209 1sq5_A Pantothenate kinase; P- 98.4 3.1E-08 1.1E-12 86.7 -0.2 27 195-221 78-104 (308)
210 3c8u_A Fructokinase; YP_612366 98.4 7.9E-08 2.7E-12 79.0 2.2 29 194-222 19-47 (208)
211 1e69_A Chromosome segregation 98.4 1.1E-07 3.6E-12 83.7 3.2 31 47-78 17-47 (322)
212 3kta_A Chromosome segregation 98.4 1.2E-07 4.1E-12 75.9 3.0 36 184-220 12-49 (182)
213 1zu4_A FTSY; GTPase, signal re 98.4 6.7E-08 2.3E-12 85.3 1.4 79 45-124 95-186 (320)
214 3vaa_A Shikimate kinase, SK; s 98.4 1.6E-07 5.5E-12 76.6 3.4 37 183-219 11-47 (199)
215 2vp4_A Deoxynucleoside kinase; 98.4 1.1E-07 3.7E-12 79.6 2.2 41 48-93 13-53 (230)
216 1pzn_A RAD51, DNA repair and r 98.4 4.2E-08 1.4E-12 87.6 -0.3 68 43-113 118-192 (349)
217 1wb9_A DNA mismatch repair pro 98.3 1.4E-07 4.7E-12 92.7 2.6 43 183-226 594-636 (800)
218 1n0w_A DNA repair protein RAD5 98.3 3.8E-07 1.3E-11 75.7 4.9 43 51-93 20-68 (243)
219 3thx_B DNA mismatch repair pro 98.3 7.9E-08 2.7E-12 95.5 0.8 43 184-226 660-702 (918)
220 1nij_A Hypothetical protein YJ 98.3 2E-08 6.9E-13 88.4 -3.4 39 56-94 5-50 (318)
221 1udx_A The GTP-binding protein 98.3 4E-07 1.4E-11 83.2 5.0 42 37-78 139-180 (416)
222 3nwj_A ATSK2; P loop, shikimat 98.3 6.8E-08 2.3E-12 82.5 -0.6 38 182-219 30-70 (250)
223 3tau_A Guanylate kinase, GMP k 98.3 3.8E-07 1.3E-11 75.0 3.4 28 53-80 6-33 (208)
224 2vf7_A UVRA2, excinuclease ABC 98.3 1.5E-07 5.3E-12 92.6 1.2 35 186-220 512-547 (842)
225 2oap_1 GSPE-2, type II secreti 98.3 1.3E-07 4.3E-12 88.6 0.2 40 184-223 247-286 (511)
226 2ygr_A Uvrabc system protein A 98.3 3.2E-07 1.1E-11 91.4 3.0 33 186-218 657-689 (993)
227 2x8a_A Nuclear valosin-contain 98.2 1.8E-07 6.2E-12 80.6 1.1 44 181-226 30-73 (274)
228 3thx_A DNA mismatch repair pro 98.2 4.5E-07 1.6E-11 90.3 4.0 33 185-217 650-682 (934)
229 1ewq_A DNA mismatch repair pro 98.2 2.7E-07 9.2E-12 90.2 2.3 37 183-222 565-601 (765)
230 1pui_A ENGB, probable GTP-bind 98.2 2E-07 6.9E-12 75.7 1.1 36 184-221 15-50 (210)
231 1iy2_A ATP-dependent metallopr 98.2 2.9E-08 1E-12 85.2 -4.4 69 37-110 57-128 (278)
232 1ixz_A ATP-dependent metallopr 98.2 3.4E-08 1.2E-12 83.4 -4.1 69 37-110 33-104 (254)
233 1rz3_A Hypothetical protein rb 98.2 1.9E-07 6.5E-12 76.4 0.5 41 52-93 19-59 (201)
234 2w0m_A SSO2452; RECA, SSPF, un 98.2 4.7E-07 1.6E-11 74.4 2.8 37 184-220 9-46 (235)
235 2kjq_A DNAA-related protein; s 98.2 2.4E-07 8.1E-12 72.7 1.0 39 54-94 35-75 (149)
236 2r6f_A Excinuclease ABC subuni 98.2 3.2E-07 1.1E-11 91.2 2.1 33 186-218 639-671 (972)
237 2o5v_A DNA replication and rep 98.2 3.8E-07 1.3E-11 81.8 2.4 35 42-77 14-48 (359)
238 1svm_A Large T antigen; AAA+ f 98.2 1.2E-07 4.1E-12 85.6 -1.0 63 42-110 156-218 (377)
239 3ec2_A DNA replication protein 98.2 2.3E-07 8E-12 74.2 0.7 31 49-79 32-62 (180)
240 3tqc_A Pantothenate kinase; bi 98.2 4.2E-08 1.4E-12 86.7 -4.0 51 40-90 71-128 (321)
241 3qf7_A RAD50; ABC-ATPase, ATPa 98.2 8.3E-07 2.8E-11 79.6 4.1 33 43-76 12-44 (365)
242 2qnr_A Septin-2, protein NEDD5 98.2 6.2E-07 2.1E-11 78.3 3.0 35 180-220 7-41 (301)
243 4eun_A Thermoresistant glucoki 98.2 7.7E-07 2.6E-11 72.5 3.4 30 191-220 23-52 (200)
244 2qag_C Septin-7; cell cycle, c 98.2 8.7E-07 3E-11 81.0 4.0 37 180-222 20-56 (418)
245 3k1j_A LON protease, ATP-depen 98.2 2.5E-07 8.4E-12 88.2 0.1 74 33-108 38-111 (604)
246 2o8b_B DNA mismatch repair pro 98.2 5.8E-07 2E-11 90.4 2.8 38 183-221 768-812 (1022)
247 1ixz_A ATP-dependent metallopr 98.2 5.3E-07 1.8E-11 76.0 2.1 39 181-221 35-73 (254)
248 1svm_A Large T antigen; AAA+ f 98.2 3.8E-07 1.3E-11 82.3 1.0 37 184-220 156-192 (377)
249 3ney_A 55 kDa erythrocyte memb 98.1 8.8E-07 3E-11 72.9 3.0 31 50-80 14-44 (197)
250 1oix_A RAS-related protein RAB 98.1 1.3E-06 4.3E-11 70.5 3.9 38 57-94 31-78 (191)
251 2bbw_A Adenylate kinase 4, AK4 98.1 1.3E-06 4.5E-11 73.4 4.1 29 196-224 26-57 (246)
252 2o5v_A DNA replication and rep 98.1 7.4E-07 2.5E-11 79.9 2.5 37 183-220 13-49 (359)
253 2ewv_A Twitching motility prot 98.1 4.1E-07 1.4E-11 81.8 0.8 37 185-223 126-162 (372)
254 1iy2_A ATP-dependent metallopr 98.1 6.5E-07 2.2E-11 76.7 2.0 39 181-221 59-97 (278)
255 3uie_A Adenylyl-sulfate kinase 98.1 4.2E-07 1.4E-11 74.1 0.8 37 185-221 13-49 (200)
256 3ec2_A DNA replication protein 98.1 6.8E-07 2.3E-11 71.4 1.9 31 191-221 32-62 (180)
257 1udx_A The GTP-binding protein 98.1 9.8E-07 3.3E-11 80.6 2.9 35 187-221 147-181 (416)
258 1u0l_A Probable GTPase ENGC; p 98.1 8.1E-07 2.8E-11 77.5 2.2 32 192-223 164-195 (301)
259 1rj9_A FTSY, signal recognitio 98.1 9.3E-07 3.2E-11 77.4 2.5 28 196-223 101-128 (304)
260 4e22_A Cytidylate kinase; P-lo 98.1 1.7E-06 5.7E-11 73.4 3.7 33 195-227 25-62 (252)
261 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 2E-06 6.8E-11 77.9 4.3 41 51-91 16-67 (392)
262 3cr8_A Sulfate adenylyltranfer 98.1 6.4E-07 2.2E-11 84.5 1.0 42 51-93 365-408 (552)
263 3pih_A Uvrabc system protein A 98.1 2.5E-06 8.6E-11 84.7 5.2 29 186-214 599-627 (916)
264 1kag_A SKI, shikimate kinase I 98.1 1.3E-06 4.5E-11 68.9 2.5 25 54-78 3-27 (173)
265 1ls1_A Signal recognition part 98.1 4.3E-07 1.5E-11 79.2 -0.6 47 46-95 91-137 (295)
266 1p9r_A General secretion pathw 98.1 5.6E-07 1.9E-11 82.2 0.0 44 184-229 156-201 (418)
267 1f2t_A RAD50 ABC-ATPase; DNA d 98.0 2.4E-06 8.1E-11 66.9 3.3 29 47-76 16-44 (149)
268 3e70_C DPA, signal recognition 98.0 1.4E-06 4.7E-11 77.2 2.1 30 193-222 125-154 (328)
269 3jvv_A Twitching mobility prot 98.0 8.9E-07 3E-11 79.2 0.9 31 193-223 119-149 (356)
270 3qf7_A RAD50; ABC-ATPase, ATPa 98.0 2.6E-06 9E-11 76.3 3.7 34 184-218 11-44 (365)
271 2vp4_A Deoxynucleoside kinase; 98.0 1.9E-06 6.4E-11 71.9 2.3 31 190-220 13-43 (230)
272 1t9h_A YLOQ, probable GTPase E 98.0 6.7E-07 2.3E-11 78.5 -0.5 31 192-222 168-198 (307)
273 1vma_A Cell division protein F 98.0 6.4E-07 2.2E-11 78.6 -0.7 46 48-94 97-142 (306)
274 1w1w_A Structural maintenance 98.0 2.9E-06 1E-10 77.3 3.3 30 50-79 21-50 (430)
275 3lda_A DNA repair protein RAD5 98.0 5.2E-06 1.8E-10 75.4 4.8 43 50-93 173-222 (400)
276 2qt1_A Nicotinamide riboside k 98.0 2.3E-06 8E-11 69.8 2.2 29 51-79 17-45 (207)
277 2cvh_A DNA repair and recombin 98.0 3.2E-06 1.1E-10 69.0 3.0 46 44-92 8-54 (220)
278 1nlf_A Regulatory protein REPA 98.0 2.6E-06 9E-11 72.9 2.5 36 193-228 26-61 (279)
279 1nlf_A Regulatory protein REPA 98.0 3.6E-06 1.2E-10 72.1 3.3 28 51-78 26-53 (279)
280 3hr8_A Protein RECA; alpha and 98.0 4.9E-06 1.7E-10 74.4 4.3 73 51-124 57-130 (356)
281 2rcn_A Probable GTPase ENGC; Y 97.9 4.7E-06 1.6E-10 74.6 4.0 27 196-222 214-240 (358)
282 3tqc_A Pantothenate kinase; bi 97.9 1.3E-06 4.6E-11 77.0 0.4 40 182-221 71-116 (321)
283 2f9l_A RAB11B, member RAS onco 97.9 4.2E-06 1.5E-10 67.5 3.3 37 57-93 7-53 (199)
284 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 5.2E-06 1.8E-10 64.9 3.7 31 187-218 14-44 (149)
285 1n0w_A DNA repair protein RAD5 97.9 4.9E-06 1.7E-10 68.9 3.7 27 193-219 20-46 (243)
286 4ad8_A DNA repair protein RECN 97.9 6E-06 2.1E-10 77.1 4.5 38 40-78 46-83 (517)
287 1qhl_A Protein (cell division 97.9 2E-07 6.8E-12 78.5 -5.1 37 191-228 22-60 (227)
288 2p67_A LAO/AO transport system 97.9 1.6E-07 5.5E-12 83.3 -6.1 57 34-91 35-91 (341)
289 1e69_A Chromosome segregation 97.9 4E-06 1.4E-10 73.5 2.9 32 188-220 16-47 (322)
290 1in4_A RUVB, holliday junction 97.9 1E-06 3.4E-11 77.8 -1.2 36 186-221 33-75 (334)
291 2kjq_A DNAA-related protein; s 97.9 4.1E-06 1.4E-10 65.6 2.2 26 196-221 35-60 (149)
292 2cvh_A DNA repair and recombin 97.9 4.3E-06 1.5E-10 68.2 1.9 34 186-219 8-42 (220)
293 2yv5_A YJEQ protein; hydrolase 97.8 4.9E-06 1.7E-10 72.6 2.3 28 194-222 162-189 (302)
294 2qt1_A Nicotinamide riboside k 97.8 6.9E-06 2.4E-10 66.9 3.0 31 191-221 15-45 (207)
295 4dcu_A GTP-binding protein ENG 97.8 2.7E-05 9.3E-10 71.5 7.1 154 57-219 25-217 (456)
296 1pzn_A RAD51, DNA repair and r 97.8 4.9E-06 1.7E-10 74.1 2.1 36 186-221 119-155 (349)
297 1w1w_A Structural maintenance 97.8 7.9E-06 2.7E-10 74.4 3.1 31 192-222 21-51 (430)
298 1cke_A CK, MSSA, protein (cyti 97.8 9.8E-06 3.3E-10 66.6 3.1 56 55-110 5-74 (227)
299 1rz3_A Hypothetical protein rb 97.8 8.4E-06 2.9E-10 66.4 2.6 27 194-220 19-45 (201)
300 2px0_A Flagellar biosynthesis 97.8 4.8E-06 1.6E-10 72.6 0.9 40 53-93 103-143 (296)
301 2pez_A Bifunctional 3'-phospho 97.8 1E-05 3.6E-10 64.3 2.9 38 53-92 3-42 (179)
302 3szr_A Interferon-induced GTP- 97.8 7.2E-06 2.5E-10 78.2 2.2 35 191-228 42-79 (608)
303 1oix_A RAS-related protein RAB 97.8 1.1E-05 3.8E-10 64.8 3.0 25 199-223 31-55 (191)
304 1sxj_E Activator 1 40 kDa subu 97.8 6.1E-06 2.1E-10 72.5 1.5 55 57-111 38-93 (354)
305 3m6a_A ATP-dependent protease 97.8 6.9E-07 2.4E-11 84.1 -4.9 55 35-91 89-143 (543)
306 1y63_A LMAJ004144AAA protein; 97.8 1.1E-05 3.8E-10 64.7 2.8 32 47-78 2-33 (184)
307 1jjv_A Dephospho-COA kinase; P 97.8 1.3E-05 4.5E-10 65.1 3.2 22 57-78 4-25 (206)
308 3qkt_A DNA double-strand break 97.7 1.8E-05 6.1E-10 69.9 4.1 31 45-76 14-44 (339)
309 3qks_A DNA double-strand break 97.7 1.5E-05 5.1E-10 65.4 3.3 29 47-76 16-44 (203)
310 3t34_A Dynamin-related protein 97.7 1E-05 3.5E-10 71.9 2.4 52 33-87 12-67 (360)
311 3ney_A 55 kDa erythrocyte memb 97.7 1.5E-05 5.2E-10 65.5 3.2 28 193-220 15-42 (197)
312 4eaq_A DTMP kinase, thymidylat 97.7 1.5E-05 5.2E-10 66.7 2.9 45 44-90 12-59 (229)
313 1zu4_A FTSY; GTPase, signal re 97.7 1.2E-05 4.1E-10 70.8 2.3 34 187-220 95-128 (320)
314 3qks_A DNA double-strand break 97.7 2.3E-05 7.8E-10 64.3 3.7 32 187-219 14-45 (203)
315 2if2_A Dephospho-COA kinase; a 97.7 1.6E-05 5.6E-10 64.3 2.6 21 57-77 3-23 (204)
316 2dr3_A UPF0273 protein PH0284; 97.7 1.5E-05 5.1E-10 66.0 2.3 49 44-92 11-60 (247)
317 1mky_A Probable GTP-binding pr 97.7 4.3E-05 1.5E-09 69.8 5.5 37 57-93 182-229 (439)
318 2www_A Methylmalonic aciduria 97.7 8.7E-06 3E-10 72.4 0.8 40 53-93 72-111 (349)
319 2qor_A Guanylate kinase; phosp 97.7 2E-05 6.9E-10 64.2 3.0 28 52-79 9-36 (204)
320 3qkt_A DNA double-strand break 97.7 2.4E-05 8.2E-10 69.1 3.7 32 187-219 14-45 (339)
321 2zr9_A Protein RECA, recombina 97.6 3.8E-05 1.3E-09 68.4 4.9 73 51-124 57-130 (349)
322 2p67_A LAO/AO transport system 97.6 8.4E-06 2.9E-10 72.2 0.4 38 183-220 42-79 (341)
323 1ni3_A YCHF GTPase, YCHF GTP-b 97.6 1.8E-05 6E-10 71.7 2.4 28 193-220 16-43 (392)
324 2gj8_A MNME, tRNA modification 97.6 2.5E-05 8.6E-10 61.6 2.9 26 53-78 2-27 (172)
325 3cr8_A Sulfate adenylyltranfer 97.6 1.3E-05 4.6E-10 75.5 1.2 30 193-222 365-394 (552)
326 1odf_A YGR205W, hypothetical 3 97.6 2.8E-05 9.6E-10 67.5 2.9 57 53-124 29-85 (290)
327 1m7g_A Adenylylsulfate kinase; 97.6 8.4E-06 2.9E-10 66.8 -0.4 42 50-92 20-63 (211)
328 2dhr_A FTSH; AAA+ protein, hex 97.6 3E-05 1E-09 72.3 3.1 38 181-220 50-87 (499)
329 1vma_A Cell division protein F 97.6 2.7E-05 9.1E-10 68.2 2.5 33 189-221 96-128 (306)
330 3k1j_A LON protease, ATP-depen 97.5 1.1E-05 3.9E-10 76.7 0.0 43 181-223 44-86 (604)
331 4ad8_A DNA repair protein RECN 97.5 1.1E-05 3.6E-10 75.4 -0.4 39 181-220 45-83 (517)
332 2ffh_A Protein (FFH); SRP54, s 97.5 1.2E-05 4E-10 73.6 -0.1 56 35-95 82-137 (425)
333 1m2o_B GTP-binding protein SAR 97.5 4E-05 1.4E-09 61.4 2.9 35 185-220 12-46 (190)
334 2dhr_A FTSH; AAA+ protein, hex 97.5 1.4E-05 4.8E-10 74.5 0.1 49 41-94 52-100 (499)
335 4eaq_A DTMP kinase, thymidylat 97.5 4.9E-05 1.7E-09 63.5 3.3 35 186-220 12-49 (229)
336 3ice_A Transcription terminati 97.5 2.2E-05 7.5E-10 71.0 1.1 32 47-78 166-197 (422)
337 3cm0_A Adenylate kinase; ATP-b 97.5 4.5E-05 1.5E-09 60.6 2.7 25 53-77 2-26 (186)
338 1ls1_A Signal recognition part 97.5 4.7E-05 1.6E-09 66.2 2.9 32 188-221 91-122 (295)
339 1m2o_B GTP-binding protein SAR 97.5 4.5E-05 1.6E-09 61.1 2.7 34 43-77 12-45 (190)
340 1sxj_C Activator 1 40 kDa subu 97.5 7.8E-06 2.7E-10 71.9 -2.2 46 33-78 22-69 (340)
341 3t61_A Gluconokinase; PSI-biol 97.4 4.4E-05 1.5E-09 61.8 2.2 24 55-78 18-41 (202)
342 1f6b_A SAR1; gtpases, N-termin 97.4 2.2E-05 7.6E-10 63.4 0.3 36 184-220 13-48 (198)
343 2wji_A Ferrous iron transport 97.4 7.2E-05 2.5E-09 58.3 3.3 22 57-78 5-26 (165)
344 2dr3_A UPF0273 protein PH0284; 97.4 5.2E-05 1.8E-09 62.7 2.5 32 187-218 12-44 (247)
345 2yvu_A Probable adenylyl-sulfa 97.4 7.3E-05 2.5E-09 59.7 3.2 29 50-78 8-36 (186)
346 1ega_A Protein (GTP-binding pr 97.4 4.2E-05 1.4E-09 66.5 1.7 26 53-78 6-31 (301)
347 1q3t_A Cytidylate kinase; nucl 97.4 7.6E-05 2.6E-09 62.1 3.2 26 52-77 13-38 (236)
348 2ga8_A Hypothetical 39.9 kDa p 97.4 1.2E-05 4.1E-10 71.8 -2.0 36 43-78 10-47 (359)
349 2qag_A Septin-2, protein NEDD5 97.4 9E-06 3.1E-10 72.7 -3.1 40 33-78 21-60 (361)
350 3lda_A DNA repair protein RAD5 97.4 0.0001 3.6E-09 66.8 3.9 26 193-218 174-199 (400)
351 2px0_A Flagellar biosynthesis 97.4 8.4E-05 2.9E-09 64.6 3.1 28 195-222 103-130 (296)
352 3kb2_A SPBC2 prophage-derived 97.4 9.9E-05 3.4E-09 57.6 3.2 22 57-78 3-24 (173)
353 3m6a_A ATP-dependent protease 97.3 4.5E-05 1.5E-09 71.7 1.3 38 183-221 95-132 (543)
354 1qhx_A CPT, protein (chloramph 97.3 0.00012 4.1E-09 57.7 3.6 24 55-78 3-26 (178)
355 2qtf_A Protein HFLX, GTP-bindi 97.3 0.00016 5.3E-09 64.7 4.7 41 54-94 177-228 (364)
356 2ga8_A Hypothetical 39.9 kDa p 97.3 3.3E-05 1.1E-09 69.0 0.2 36 185-220 10-47 (359)
357 1odf_A YGR205W, hypothetical 3 97.3 7.9E-05 2.7E-09 64.6 2.5 28 195-222 29-56 (290)
358 1j8m_F SRP54, signal recogniti 97.3 1E-05 3.4E-10 70.6 -3.2 47 46-94 89-136 (297)
359 3auy_A DNA double-strand break 97.3 0.00011 3.7E-09 65.6 3.5 33 185-218 14-46 (371)
360 2zej_A Dardarin, leucine-rich 97.3 0.00012 4.1E-09 58.1 3.2 22 57-78 4-25 (184)
361 2wjg_A FEOB, ferrous iron tran 97.3 0.00013 4.3E-09 57.6 3.3 22 57-78 9-30 (188)
362 2www_A Methylmalonic aciduria 97.3 0.00012 4.1E-09 65.0 3.1 25 196-220 73-97 (349)
363 1kht_A Adenylate kinase; phosp 97.3 0.00016 5.5E-09 57.3 3.4 25 54-78 2-26 (192)
364 1f6b_A SAR1; gtpases, N-termin 97.2 1.8E-05 6.2E-10 63.9 -2.3 35 42-77 13-47 (198)
365 1lv7_A FTSH; alpha/beta domain 97.2 7.9E-05 2.7E-09 62.6 1.6 44 45-93 37-80 (257)
366 3t34_A Dynamin-related protein 97.2 0.00013 4.5E-09 64.7 2.9 34 184-220 24-57 (360)
367 3lw7_A Adenylate kinase relate 97.2 0.00016 5.4E-09 56.1 3.1 19 57-75 3-21 (179)
368 3auy_A DNA double-strand break 97.2 0.0002 6.7E-09 64.0 4.0 31 45-76 16-46 (371)
369 3ice_A Transcription terminati 97.2 0.00015 5E-09 65.7 3.0 32 189-220 166-197 (422)
370 2ohf_A Protein OLA1, GTP-bindi 97.2 0.00018 6.1E-09 65.1 3.5 41 51-91 18-68 (396)
371 2dy1_A Elongation factor G; tr 97.2 5.7E-05 2E-09 72.7 0.2 39 49-87 3-42 (665)
372 3t61_A Gluconokinase; PSI-biol 97.2 0.00016 5.4E-09 58.5 2.7 23 197-219 18-40 (202)
373 1lv7_A FTSH; alpha/beta domain 97.2 0.00016 5.4E-09 60.7 2.8 34 185-220 35-68 (257)
374 1m7g_A Adenylylsulfate kinase; 97.2 0.00016 5.3E-09 59.1 2.6 28 193-220 21-48 (211)
375 1sxj_C Activator 1 40 kDa subu 97.2 6E-05 2E-09 66.2 0.0 36 185-220 32-69 (340)
376 2jaq_A Deoxyguanosine kinase; 97.2 0.00021 7.3E-09 57.2 3.2 22 57-78 2-23 (205)
377 1np6_A Molybdopterin-guanine d 97.1 0.0002 6.8E-09 57.5 2.9 38 56-93 7-46 (174)
378 1j8m_F SRP54, signal recogniti 97.1 0.00019 6.4E-09 62.5 2.9 32 188-220 89-121 (297)
379 3trf_A Shikimate kinase, SK; a 97.1 0.00025 8.6E-09 56.2 3.4 25 54-78 4-28 (185)
380 3r20_A Cytidylate kinase; stru 97.1 0.00022 7.6E-09 60.0 3.2 23 55-77 9-31 (233)
381 1via_A Shikimate kinase; struc 97.1 0.00018 6.3E-09 56.7 2.6 22 57-78 6-27 (175)
382 2ze6_A Isopentenyl transferase 97.1 0.0002 6.8E-09 60.6 2.9 22 57-78 3-24 (253)
383 2rhm_A Putative kinase; P-loop 97.1 0.00021 7.2E-09 56.8 2.8 26 53-78 3-28 (193)
384 3iij_A Coilin-interacting nucl 97.1 0.00024 8.3E-09 56.2 3.0 25 53-77 9-33 (180)
385 2ffh_A Protein (FFH); SRP54, s 97.1 0.00035 1.2E-08 63.8 4.4 31 188-220 91-121 (425)
386 1ly1_A Polynucleotide kinase; 97.1 0.00027 9.3E-09 55.4 3.2 21 57-77 4-24 (181)
387 1vht_A Dephospho-COA kinase; s 97.1 0.00026 8.9E-09 57.9 3.2 23 55-77 4-26 (218)
388 2p5t_B PEZT; postsegregational 97.1 0.00018 6.1E-09 60.7 2.2 40 51-93 28-67 (253)
389 3lxx_A GTPase IMAP family memb 97.1 0.00037 1.3E-08 57.8 4.0 22 57-78 31-52 (239)
390 2v54_A DTMP kinase, thymidylat 97.1 0.00035 1.2E-08 56.1 3.6 26 54-79 3-28 (204)
391 2ius_A DNA translocase FTSK; n 97.0 0.00019 6.4E-09 67.1 2.1 47 47-93 159-206 (512)
392 2plr_A DTMP kinase, probable t 97.0 0.00032 1.1E-08 56.5 3.2 25 54-78 3-27 (213)
393 1uf9_A TT1252 protein; P-loop, 97.0 0.00029 9.9E-09 56.5 2.9 23 56-78 9-31 (203)
394 1gtv_A TMK, thymidylate kinase 97.0 0.00016 5.4E-09 58.7 1.2 22 57-78 2-23 (214)
395 2c95_A Adenylate kinase 1; tra 97.0 0.00034 1.2E-08 55.8 3.1 26 53-78 7-32 (196)
396 2wwf_A Thymidilate kinase, put 97.0 0.00037 1.3E-08 56.3 3.3 25 53-77 8-32 (212)
397 1tev_A UMP-CMP kinase; ploop, 97.0 0.00035 1.2E-08 55.4 3.1 24 55-78 3-26 (196)
398 1ex7_A Guanylate kinase; subst 97.0 0.00035 1.2E-08 56.7 3.0 21 58-78 4-24 (186)
399 2p5t_B PEZT; postsegregational 97.0 0.0002 6.7E-09 60.4 1.4 27 193-219 28-54 (253)
400 3lxx_A GTPase IMAP family memb 97.0 0.00041 1.4E-08 57.5 3.4 24 199-222 31-54 (239)
401 4ag6_A VIRB4 ATPase, type IV s 97.0 0.00018 6E-09 64.5 1.2 36 54-90 34-69 (392)
402 1nn5_A Similar to deoxythymidy 97.0 0.00042 1.4E-08 56.0 3.3 25 53-77 7-31 (215)
403 2qag_A Septin-2, protein NEDD5 96.9 0.00026 9E-09 63.1 2.1 33 183-221 29-61 (361)
404 1nks_A Adenylate kinase; therm 96.9 0.00039 1.3E-08 55.0 2.9 22 57-78 3-24 (194)
405 2ce7_A Cell division protein F 96.9 0.0003 1E-08 65.2 2.5 37 182-220 36-72 (476)
406 1gvn_B Zeta; postsegregational 96.9 0.00039 1.3E-08 60.0 2.7 36 53-91 31-66 (287)
407 3hr8_A Protein RECA; alpha and 96.9 0.00047 1.6E-08 61.5 3.3 28 193-220 57-84 (356)
408 1mky_A Probable GTP-binding pr 96.9 0.00051 1.8E-08 62.6 3.6 24 198-221 181-204 (439)
409 1aky_A Adenylate kinase; ATP:A 96.9 0.00062 2.1E-08 55.7 3.6 25 54-78 3-27 (220)
410 1ypw_A Transitional endoplasmi 96.9 0.00035 1.2E-08 68.6 2.4 34 185-220 228-261 (806)
411 3k53_A Ferrous iron transport 96.9 0.00048 1.6E-08 58.5 3.0 22 57-78 5-26 (271)
412 3ake_A Cytidylate kinase; CMP 96.9 0.00055 1.9E-08 55.0 3.2 22 57-78 4-25 (208)
413 2z0h_A DTMP kinase, thymidylat 96.9 0.00056 1.9E-08 54.5 3.2 22 57-78 2-23 (197)
414 3fb4_A Adenylate kinase; psych 96.9 0.00055 1.9E-08 55.7 3.2 21 57-77 2-22 (216)
415 2vli_A Antibiotic resistance p 96.9 0.00043 1.5E-08 54.6 2.4 25 54-78 4-28 (183)
416 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00046 1.6E-08 62.4 2.8 29 193-221 18-46 (396)
417 2bwj_A Adenylate kinase 5; pho 96.8 0.00058 2E-08 54.5 3.1 26 53-78 10-35 (199)
418 3cf0_A Transitional endoplasmi 96.8 0.00053 1.8E-08 59.2 2.8 39 50-91 44-82 (301)
419 3dl0_A Adenylate kinase; phosp 96.8 0.00065 2.2E-08 55.3 3.2 22 57-78 2-23 (216)
420 1e6c_A Shikimate kinase; phosp 96.8 0.00059 2E-08 53.3 2.7 23 56-78 3-25 (173)
421 2cdn_A Adenylate kinase; phosp 96.8 0.00084 2.9E-08 54.1 3.6 25 54-78 19-43 (201)
422 2pt5_A Shikimate kinase, SK; a 96.8 0.00074 2.5E-08 52.5 3.2 22 57-78 2-23 (168)
423 1zuh_A Shikimate kinase; alpha 96.8 0.00078 2.7E-08 52.6 3.3 23 56-78 8-30 (168)
424 1zd8_A GTP:AMP phosphotransfer 96.8 0.0007 2.4E-08 55.7 3.2 26 53-78 5-30 (227)
425 2pbr_A DTMP kinase, thymidylat 96.8 0.00073 2.5E-08 53.5 3.1 22 57-78 2-23 (195)
426 1xjc_A MOBB protein homolog; s 96.8 0.00078 2.7E-08 53.8 3.2 23 56-78 5-27 (169)
427 3q72_A GTP-binding protein RAD 96.7 0.00066 2.2E-08 52.1 2.6 22 57-78 4-25 (166)
428 1z2a_A RAS-related protein RAB 96.7 0.00072 2.5E-08 51.8 2.8 22 57-78 7-28 (168)
429 2ged_A SR-beta, signal recogni 96.7 0.00072 2.5E-08 53.5 2.9 24 55-78 48-71 (193)
430 2nzj_A GTP-binding protein REM 96.7 0.00089 3E-08 51.7 3.3 22 57-78 6-27 (175)
431 2iyv_A Shikimate kinase, SK; t 96.7 0.00066 2.3E-08 53.7 2.6 23 56-78 3-25 (184)
432 2erx_A GTP-binding protein DI- 96.7 0.0009 3.1E-08 51.3 3.3 22 57-78 5-26 (172)
433 2zr9_A Protein RECA, recombina 96.7 0.00096 3.3E-08 59.2 3.9 27 193-219 57-83 (349)
434 3llm_A ATP-dependent RNA helic 96.7 0.00053 1.8E-08 56.9 2.1 26 52-77 73-98 (235)
435 3q85_A GTP-binding protein REM 96.7 0.00092 3.1E-08 51.4 3.3 22 57-78 4-25 (169)
436 1qf9_A UMP/CMP kinase, protein 96.7 0.00078 2.7E-08 53.2 2.9 23 56-78 7-29 (194)
437 1uj2_A Uridine-cytidine kinase 96.7 0.00084 2.9E-08 56.3 3.2 22 57-78 24-45 (252)
438 1ko7_A HPR kinase/phosphatase; 96.7 0.0012 4E-08 58.0 4.1 38 39-77 129-166 (314)
439 2dyk_A GTP-binding protein; GT 96.7 0.00087 3E-08 51.0 2.9 22 57-78 3-24 (161)
440 1fzq_A ADP-ribosylation factor 96.7 0.00078 2.7E-08 53.2 2.6 22 57-78 18-39 (181)
441 2grj_A Dephospho-COA kinase; T 96.7 0.00095 3.3E-08 54.2 3.2 23 56-78 13-35 (192)
442 3tw8_B RAS-related protein RAB 96.7 0.00093 3.2E-08 51.8 3.0 22 57-78 11-32 (181)
443 2ce2_X GTPase HRAS; signaling 96.7 0.00079 2.7E-08 51.2 2.5 22 57-78 5-26 (166)
444 1ukz_A Uridylate kinase; trans 96.7 0.00097 3.3E-08 53.6 3.2 24 55-78 15-38 (203)
445 1kao_A RAP2A; GTP-binding prot 96.7 0.00091 3.1E-08 51.0 2.9 21 57-77 5-25 (167)
446 1zak_A Adenylate kinase; ATP:A 96.6 0.00079 2.7E-08 55.1 2.6 25 54-78 4-28 (222)
447 1u8z_A RAS-related protein RAL 96.6 0.00091 3.1E-08 51.0 2.8 22 57-78 6-27 (168)
448 2z43_A DNA repair and recombin 96.6 0.0014 4.8E-08 57.3 4.3 28 51-78 103-130 (324)
449 2ius_A DNA translocase FTSK; n 96.6 0.00062 2.1E-08 63.6 2.1 46 189-234 159-208 (512)
450 2r6a_A DNAB helicase, replicat 96.6 0.00025 8.4E-09 65.0 -0.6 53 42-95 190-243 (454)
451 1z08_A RAS-related protein RAB 96.6 0.00094 3.2E-08 51.3 2.8 22 57-78 8-29 (170)
452 2r6a_A DNAB helicase, replicat 96.6 0.00061 2.1E-08 62.4 2.0 52 185-236 191-247 (454)
453 1z0j_A RAB-22, RAS-related pro 96.6 0.00097 3.3E-08 51.1 2.9 22 57-78 8-29 (170)
454 2lkc_A Translation initiation 96.6 0.0014 4.9E-08 50.8 3.8 24 54-77 7-30 (178)
455 2qtf_A Protein HFLX, GTP-bindi 96.6 0.001 3.5E-08 59.4 3.3 28 195-222 176-204 (364)
456 3b1v_A Ferrous iron uptake tra 96.6 0.0011 3.7E-08 56.8 3.3 22 57-78 5-26 (272)
457 2ce7_A Cell division protein F 96.6 0.00029 1E-08 65.2 -0.3 33 44-78 40-72 (476)
458 1ek0_A Protein (GTP-binding pr 96.6 0.001 3.5E-08 50.9 2.8 22 57-78 5-26 (170)
459 1ky3_A GTP-binding protein YPT 96.6 0.001 3.5E-08 51.6 2.9 22 57-78 10-31 (182)
460 2qmh_A HPR kinase/phosphorylas 96.6 0.0019 6.5E-08 53.1 4.4 39 39-78 19-57 (205)
461 1c1y_A RAS-related protein RAP 96.6 0.0011 3.6E-08 50.8 2.8 21 57-77 5-25 (167)
462 2ged_A SR-beta, signal recogni 96.6 0.0011 3.7E-08 52.4 2.9 24 198-221 49-72 (193)
463 1g16_A RAS-related protein SEC 96.6 0.00095 3.3E-08 51.2 2.5 22 57-78 5-26 (170)
464 1svi_A GTP-binding protein YSX 96.6 0.001 3.5E-08 52.6 2.8 23 56-78 24-46 (195)
465 1sxj_E Activator 1 40 kDa subu 96.6 0.00079 2.7E-08 58.8 2.2 23 197-219 36-58 (354)
466 3lxw_A GTPase IMAP family memb 96.6 0.0012 4.1E-08 55.4 3.3 22 57-78 23-44 (247)
467 3bos_A Putative DNA replicatio 96.6 0.0014 4.8E-08 53.4 3.6 25 54-78 51-75 (242)
468 3ihw_A Centg3; RAS, centaurin, 96.6 0.0023 7.9E-08 50.7 4.8 36 57-92 22-65 (184)
469 3pqc_A Probable GTP-binding pr 96.6 0.0011 3.6E-08 52.2 2.8 22 57-78 25-46 (195)
470 1wms_A RAB-9, RAB9, RAS-relate 96.6 0.0011 3.8E-08 51.3 2.9 22 57-78 9-30 (177)
471 3cf0_A Transitional endoplasmi 96.6 0.00082 2.8E-08 58.0 2.2 29 192-220 44-72 (301)
472 1v5w_A DMC1, meiotic recombina 96.6 0.0011 3.7E-08 58.6 3.1 27 51-77 118-144 (343)
473 1jal_A YCHF protein; nucleotid 96.6 0.0019 6.4E-08 57.8 4.6 37 55-91 2-48 (363)
474 2fn4_A P23, RAS-related protei 96.5 0.001 3.5E-08 51.5 2.6 22 57-78 11-32 (181)
475 2cxx_A Probable GTP-binding pr 96.5 0.0011 3.9E-08 51.9 2.8 22 57-78 3-24 (190)
476 3t1o_A Gliding protein MGLA; G 96.5 0.0011 3.9E-08 52.1 2.8 23 57-79 16-38 (198)
477 1svi_A GTP-binding protein YSX 96.5 0.0013 4.4E-08 52.0 3.1 24 198-221 24-47 (195)
478 3pqc_A Probable GTP-binding pr 96.5 0.0013 4.5E-08 51.7 3.1 24 198-221 24-47 (195)
479 3tlx_A Adenylate kinase 2; str 96.5 0.0013 4.4E-08 55.1 3.2 24 54-77 28-51 (243)
480 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0013 4.4E-08 55.6 3.2 24 54-77 3-26 (260)
481 3clv_A RAB5 protein, putative; 96.5 0.0012 4.1E-08 52.0 2.9 22 57-78 9-30 (208)
482 1moz_A ARL1, ADP-ribosylation 96.5 0.00093 3.2E-08 52.2 2.2 23 198-220 19-41 (183)
483 2f6r_A COA synthase, bifunctio 96.5 0.0011 3.9E-08 56.7 2.9 22 56-77 76-97 (281)
484 1r2q_A RAS-related protein RAB 96.5 0.0012 4.3E-08 50.4 2.8 21 57-77 8-28 (170)
485 2xb4_A Adenylate kinase; ATP-b 96.5 0.0014 4.6E-08 54.1 3.2 22 57-78 2-23 (223)
486 2hxs_A RAB-26, RAS-related pro 96.5 0.0014 4.9E-08 50.7 3.2 22 57-78 8-29 (178)
487 3tqf_A HPR(Ser) kinase; transf 96.5 0.0027 9.2E-08 51.1 4.8 36 41-77 3-38 (181)
488 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0013 4.4E-08 51.5 2.9 22 57-78 6-27 (189)
489 3bc1_A RAS-related protein RAB 96.5 0.0013 4.5E-08 51.5 2.8 21 57-77 13-33 (195)
490 1gvn_B Zeta; postsegregational 96.5 0.0013 4.6E-08 56.5 3.1 24 195-218 31-54 (287)
491 1moz_A ARL1, ADP-ribosylation 96.5 0.00086 2.9E-08 52.4 1.7 22 56-77 19-40 (183)
492 2oil_A CATX-8, RAS-related pro 96.5 0.0014 4.6E-08 51.9 2.8 22 57-78 27-48 (193)
493 3cbq_A GTP-binding protein REM 96.5 0.0013 4.5E-08 52.7 2.7 22 199-220 25-46 (195)
494 3lxw_A GTPase IMAP family memb 96.5 0.0016 5.5E-08 54.6 3.4 23 199-221 23-45 (247)
495 1upt_A ARL1, ADP-ribosylation 96.5 0.0014 4.8E-08 50.4 2.8 21 57-77 9-29 (171)
496 1r8s_A ADP-ribosylation factor 96.5 0.0014 4.9E-08 50.1 2.8 21 57-77 2-22 (164)
497 3b9p_A CG5977-PA, isoform A; A 96.5 0.0015 5.1E-08 55.7 3.2 25 54-78 53-77 (297)
498 3be4_A Adenylate kinase; malar 96.4 0.0015 5.1E-08 53.5 3.1 25 54-78 4-28 (217)
499 2oil_A CATX-8, RAS-related pro 96.4 0.0015 5.1E-08 51.7 3.0 23 199-221 27-49 (193)
500 2a9k_A RAS-related protein RAL 96.4 0.0015 5E-08 50.9 2.8 21 57-77 20-40 (187)
No 1
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.94 E-value=3.5e-26 Score=207.08 Aligned_cols=144 Identities=22% Similarity=0.251 Sum_probs=125.0
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.|++..+|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++||||++.
T Consensus 7 ~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~ 85 (381)
T 3rlf_A 7 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85 (381)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTCCGGGSCEEEECTTCC
T ss_pred EeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC-CCCCCeEEEECCEECCCCCHHHCCEEEEecCCc
Confidence 5789999999999999999999999999999999999999999997 5688999999998764 2334567999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+||.|++.+..... ...+...++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus 86 l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~ 151 (381)
T 3rlf_A 86 LYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (381)
T ss_dssp CCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcC
Confidence 999999999999865432 234555667788899999998888888888999999999999999875
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.94 E-value=1.5e-26 Score=208.14 Aligned_cols=145 Identities=22% Similarity=0.292 Sum_probs=122.6
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC-----CchhhhhhceEE
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER-----NLSQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~-----~~~~~~~~~g~v 106 (240)
-+|+++.|+++.+|+++||+|++||+++|+||||||||||||+|+|+ ..|++|+|.++|.++ .....++.++||
T Consensus 7 i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~v 85 (359)
T 3fvq_A 7 IGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF-EQPDSGEISLSGKTIFSKNTNLPVRERRLGYL 85 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS-SCCSEEEEEETTEEEESSSCBCCGGGSCCEEE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC-CCCCCcEEEECCEECcccccccchhhCCEEEE
Confidence 35789999999999999999999999999999999999999999997 668899999999875 123446789999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
||++.+++.+||.|++.+.... ....+...++.++++++.+++.+...+.+...|++++|++.++++++..
T Consensus 86 fQ~~~l~p~ltV~eni~~~l~~---~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~ 156 (359)
T 3fvq_A 86 VQEGVLFPHLTVYRNIAYGLGN---GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPD 156 (359)
T ss_dssp CTTCCCCTTSCHHHHHHTTSTT---SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred eCCCcCCCCCCHHHHHHHHHHH---cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999875321 1223344456778888888998888888888999999999999999875
No 3
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.93 E-value=1.2e-26 Score=219.06 Aligned_cols=92 Identities=21% Similarity=0.191 Sum_probs=65.0
Q ss_pred cccCCCceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEE---------EECCccCCc--
Q psy310 29 TNTNTNNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI---------TINGHERNL-- 96 (240)
Q Consensus 29 ~~~~~~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V---------~v~g~~~~~-- 96 (240)
..-.+|+.+.|+++ .+++++| +|++||+++|+|||||||||||++|+|+ .+|++|++ .+.|.+...
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl-~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQ-LIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS-SCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 34457999999987 4999999 9999999999999999999999999997 55788884 234543211
Q ss_pred hh---hhhhceEEccccccccc---ccHHHHH
Q psy310 97 SQ---FRKLSCYIMQDNQLHAN---LTVEEAM 122 (240)
Q Consensus 97 ~~---~~~~~g~v~Q~~~~~~~---ltv~e~l 122 (240)
.. .+..+++++|...+.+. .++.+++
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~ 130 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL 130 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHH
Confidence 00 11246788887544332 2566654
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.93 E-value=1.1e-25 Score=191.71 Aligned_cols=147 Identities=25% Similarity=0.293 Sum_probs=116.3
Q ss_pred CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh----hhh
Q psy310 33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ----FRK 101 (240)
Q Consensus 33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~----~~~ 101 (240)
+|+++.|+. .++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... .. .++
T Consensus 5 ~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 83 (235)
T 3tif_A 5 KNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-DKPTEGEVYIDNIKTNDLDDDELTKIRRD 83 (235)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred EEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCceEEEECCEEcccCCHHHHHHHhhc
Confidence 466777753 4699999999999999999999999999999999997 56889999999987632 11 134
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHHHHhcc
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.++||+|++.+++.+|+.|++.+................+.+.++++.+++.+. ....+...|++++|++.+++++...
T Consensus 84 ~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~ 163 (235)
T 3tif_A 84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN 163 (235)
T ss_dssp HEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 699999999999999999999876443221223444455667778888887764 3566777899999999999999875
No 5
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.93 E-value=1.4e-25 Score=189.71 Aligned_cols=144 Identities=27% Similarity=0.264 Sum_probs=118.6
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch------hhh-hhceE
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS------QFR-KLSCY 105 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~------~~~-~~~g~ 105 (240)
+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.... ..+ +.++|
T Consensus 8 ~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 86 (224)
T 2pcj_A 8 ENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL-DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGF 86 (224)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS-SCCSEEEEEETTEECCSSCHHHHHHHHHHHEEE
T ss_pred EeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEECCCCCHHHHHHHHhCcEEE
Confidence 5788889888999999999999999999999999999999999997 567899999999876321 122 67999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|+|++.+++.+|+.|++.+..... ........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus 87 v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 87 VFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred EecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999999999999998754332 123333455677788888887777777778899999999999999875
No 6
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.93 E-value=1.2e-26 Score=221.80 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=65.3
Q ss_pred CCCceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEE---------EECCccCCc--hh-
Q psy310 32 NTNNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI---------TINGHERNL--SQ- 98 (240)
Q Consensus 32 ~~~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V---------~v~g~~~~~--~~- 98 (240)
.+|+.+.|+++ .+|+++| +|++||+++|+|||||||||||++|+|+ ..|++|++ .+.|.+... ..
T Consensus 94 ~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl-l~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 94 DEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQ-LIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTS-SCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred cCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCC-CCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 46899999887 4999999 9999999999999999999999999997 55788885 234543211 00
Q ss_pred --hhhhceEEccccccccc---ccHHHHHH
Q psy310 99 --FRKLSCYIMQDNQLHAN---LTVEEAMN 123 (240)
Q Consensus 99 --~~~~~g~v~Q~~~~~~~---ltv~e~l~ 123 (240)
.+..+++++|.....+. .++.+++.
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~ 201 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLK 201 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhh
Confidence 12246788886543322 26776653
No 7
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.93 E-value=2.1e-25 Score=200.55 Aligned_cols=145 Identities=24% Similarity=0.319 Sum_probs=123.2
Q ss_pred CCCceecC-CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccc
Q psy310 32 NTNNNCEP-NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQD 109 (240)
Q Consensus 32 ~~~~~~~~-~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~ 109 (240)
-+|+.+.| +++++|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++||||+
T Consensus 17 ~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 95 (355)
T 1z47_A 17 FVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL-ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQN 95 (355)
T ss_dssp EEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTCCGGGSSEEEECGG
T ss_pred EEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC-CCCCccEEEECCEECCcCChhhCcEEEEecC
Confidence 35788899 888899999999999999999999999999999999997 5688999999998763 23346789999999
Q ss_pred ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+++.+|+.|++.+..... ...+...++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus 96 ~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~ 163 (355)
T 1z47_A 96 YALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPR 163 (355)
T ss_dssp GCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 99999999999998864332 223444566778889999998888888888999999999999999875
No 8
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.93 E-value=1.5e-25 Score=201.84 Aligned_cols=145 Identities=25% Similarity=0.277 Sum_probs=122.6
Q ss_pred CCCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhh
Q psy310 32 NTNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRK 101 (240)
Q Consensus 32 ~~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~ 101 (240)
-+|+++.|+. ..+|++|||+|++||++||+||||||||||+|+|+|+ .+|++|+|.++|.++.. ...++
T Consensus 27 v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL-~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 105 (366)
T 3tui_C 27 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-ERPTEGSVLVDGQELTTLSESELTKARR 105 (366)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEETTEECSSCCHHHHHHHHT
T ss_pred EEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC-CCCCceEEEECCEECCcCCHHHHHHHhC
Confidence 3577777753 5799999999999999999999999999999999997 66899999999987642 22457
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.++||||++.+++.+||.|++.+..... ...+...++.+.++++.+++.+....++...|++++|++.+++++...
T Consensus 106 ~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~ 181 (366)
T 3tui_C 106 QIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN 181 (366)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTC
T ss_pred cEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 8999999999999999999998865432 234555667788899999998888888888999999999999999875
No 9
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.93 E-value=2.3e-25 Score=192.60 Aligned_cols=146 Identities=25% Similarity=0.307 Sum_probs=120.4
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---------------
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--------------- 96 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--------------- 96 (240)
-+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...
T Consensus 9 i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 87 (262)
T 1b0u_A 9 VIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL-EKPSEGAIIVNGQNINLVRDKDGQLKVADKNQ 87 (262)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTEECCEEECTTSSEEESCHHH
T ss_pred EeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEEccccccccccccccChhh
Confidence 45788899989999999999999999999999999999999999997 56789999999987641
Q ss_pred -hhhhhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHH
Q psy310 97 -SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLA 174 (240)
Q Consensus 97 -~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 174 (240)
...++.++||+|++.+++.+|+.|++.+...... ........+.+.++++.+++.+. ....+...|++++|++.++
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 88 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165 (262)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred HHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc--CCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence 1345679999999999999999999987531111 22333445667788888898877 7777778899999999999
Q ss_pred HHHhcc
Q psy310 175 LAMYNR 180 (240)
Q Consensus 175 ~~~~~~ 180 (240)
+++...
T Consensus 166 raL~~~ 171 (262)
T 1b0u_A 166 RALAME 171 (262)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 999875
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.93 E-value=2.8e-25 Score=192.31 Aligned_cols=147 Identities=22% Similarity=0.283 Sum_probs=120.7
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-----chhhhhhceE
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-----LSQFRKLSCY 105 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-----~~~~~~~~g~ 105 (240)
.-+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|
T Consensus 26 ~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~ 104 (263)
T 2olj_A 26 DVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL-EDFDEGEIIIDGINLKAKDTNLNKVREEVGM 104 (263)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTEESSSTTCCHHHHHHHEEE
T ss_pred EEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC-CCCCCcEEEECCEECCCccccHHHHhCcEEE
Confidence 346788999988999999999999999999999999999999999997 5678999999998763 1234567999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|+|++.+++.+|+.|++.+...... ........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus 105 v~Q~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~ 177 (263)
T 2olj_A 105 VFQRFNLFPHMTVLNNITLAPMKVR--KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAME 177 (263)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999987531111 223333455677888888888777777778899999999999999875
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=2.8e-25 Score=191.54 Aligned_cols=144 Identities=21% Similarity=0.268 Sum_probs=119.0
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~ 110 (240)
+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|++|++
T Consensus 19 ~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~ 97 (256)
T 1vpl_A 19 KDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-IKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEA 97 (256)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTEETTTCHHHHHTTEEEECTTC
T ss_pred EEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEECCccHHHHhhcEEEEcCCC
Confidence 5788899989999999999999999999999999999999999997 56789999999987532 23456799999999
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+++.+|+.|++.+..... ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus 98 ~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~ 164 (256)
T 1vpl_A 98 GAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN 164 (256)
T ss_dssp CCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999999998754322 122333345567788888887777777778899999999999999875
No 12
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.93 E-value=2.9e-25 Score=193.39 Aligned_cols=168 Identities=20% Similarity=0.240 Sum_probs=131.9
Q ss_pred CCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhhceE
Q psy310 32 NTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCY 105 (240)
Q Consensus 32 ~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~~g~ 105 (240)
-+|+++.|++ .++|++|||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++.. ...++.++|
T Consensus 10 i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl-~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~ 88 (275)
T 3gfo_A 10 VEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI-LKPSSGRILFDNKPIDYSRKGIMKLRESIGI 88 (275)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTEECCCSHHHHHHHHHSEEE
T ss_pred EEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-CCCCCeEEEECCEECCcccccHHHHhCcEEE
Confidence 4578899975 5699999999999999999999999999999999997 56789999999987631 235678999
Q ss_pred Eccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccc
Q psy310 106 IMQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEK 184 (240)
Q Consensus 106 v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (240)
|||++. .+..+|+.|++.+..... ........+.++++++.+++.+.....+...|++++|++.+++++...
T Consensus 89 v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~---- 161 (275)
T 3gfo_A 89 VFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME---- 161 (275)
T ss_dssp ECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTC----
T ss_pred EEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcC----
Confidence 999973 344789999998764321 234455566788889999998888888888999999999999999875
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCC-----HHHHHHHHhCC
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAG-----KSTLLNILTGY 220 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsG-----KSTLlk~l~G~ 220 (240)
..+.|+.++-|| +-.++++|..+
T Consensus 162 -------------P~lLlLDEPts~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 162 -------------PKVLILDEPTAGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp -------------CSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred -------------CCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 345666666663 34455555444
No 13
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.93 E-value=9.2e-26 Score=223.94 Aligned_cols=82 Identities=24% Similarity=0.380 Sum_probs=62.0
Q ss_pred ccCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccc
Q psy310 30 NTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQD 109 (240)
Q Consensus 30 ~~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~ 109 (240)
-.+.|+.+.|+++.+|+++||+|++||+++|+|||||||||||++|+| |+| .|.+.. . ...++|++|+
T Consensus 436 L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-------G~i--~g~~~~-~--~~~~~~v~q~ 503 (986)
T 2iw3_A 436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-------GQV--DGFPTQ-E--ECRTVYVEHD 503 (986)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-------TCS--TTCCCT-T--TSCEEETTCC
T ss_pred eEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-------CCc--CCCccc-c--ceeEEEEccc
Confidence 344588899999999999999999999999999999999999999995 111 222211 0 1125788887
Q ss_pred c-cccccccHHHHHH
Q psy310 110 N-QLHANLTVEEAMN 123 (240)
Q Consensus 110 ~-~~~~~ltv~e~l~ 123 (240)
+ .+...+++.+++.
T Consensus 504 ~~~~~~~ltv~e~l~ 518 (986)
T 2iw3_A 504 IDGTHSDTSVLDFVF 518 (986)
T ss_dssp CCCCCTTSBHHHHHH
T ss_pred ccccccCCcHHHHHH
Confidence 4 5567788888765
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.93 E-value=2.7e-25 Score=200.27 Aligned_cols=144 Identities=22% Similarity=0.281 Sum_probs=122.2
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.|+++++|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++||||++.
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~ 85 (362)
T 2it1_A 7 ENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI-YKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWA 85 (362)
T ss_dssp EEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTSCGGGTTEEEECTTCC
T ss_pred EeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-CCCCceEEEECCEECCcCCHhHCcEEEEecCcc
Confidence 5788999999999999999999999999999999999999999997 5688999999998763 2234577999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+|+.|++.+..... ...+...++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus 86 l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 151 (362)
T 2it1_A 86 LYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKE 151 (362)
T ss_dssp CCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999999999864332 223444456778888989988887778888999999999999999875
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.93 E-value=2.7e-25 Score=201.11 Aligned_cols=144 Identities=19% Similarity=0.235 Sum_probs=122.0
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-------chhhhhhceE
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-------LSQFRKLSCY 105 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-------~~~~~~~~g~ 105 (240)
+|+.+.|+++++|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++|
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~ 85 (372)
T 1g29_1 7 VDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-EEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAM 85 (372)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-SCCSEEEEEETTEEEEEGGGTEECCGGGSSEEE
T ss_pred EeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC-CCCCccEEEECCEECccccccccCCHhHCCEEE
Confidence 5788899989999999999999999999999999999999999997 5688999999998753 2234567999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|||++.+++.+|+.|++.+..... ...+...++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus 86 v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 86 VFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp ECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred EeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999864332 223444456678888888888887788888999999999999999875
No 16
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.92 E-value=3.3e-25 Score=200.41 Aligned_cols=146 Identities=21% Similarity=0.248 Sum_probs=116.9
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQD 109 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~ 109 (240)
.-+|+.+.|+++.+|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++||||+
T Consensus 13 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 91 (372)
T 1v43_A 13 KLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-EEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 91 (372)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-CCCCceEEEECCEECCCCChhhCcEEEEecC
Confidence 345889999999999999999999999999999999999999999997 5688999999998763 22345779999999
Q ss_pred ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+++.+|+.|++.+.... ....+...++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus 92 ~~l~~~ltv~eni~~~~~~---~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 159 (372)
T 1v43_A 92 YAVWPHMTVYENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE 159 (372)
T ss_dssp -----CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred cccCCCCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999999999864211 1233444556778889999998888888888999999999999999875
No 17
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.92 E-value=2.1e-25 Score=200.84 Aligned_cols=144 Identities=22% Similarity=0.234 Sum_probs=120.7
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.|+++.+|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++||||++.
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~ 85 (359)
T 2yyz_A 7 VNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI-YKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYA 85 (359)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTSCGGGTTEEEECSSCC
T ss_pred EEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC-CCCCccEEEECCEECCCCChhhCcEEEEecCcc
Confidence 5788899999999999999999999999999999999999999997 5688999999998763 2234577999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+|+.|++.+... . ....+...++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus 86 l~~~ltv~eni~~~~~--~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~ 151 (359)
T 2yyz_A 86 LYPHMTVFENIAFPLR--A-RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQ 151 (359)
T ss_dssp CCTTSCHHHHHHGGGS--S-SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCCCHHHHHHHHHH--h-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999999986421 1 1223333445677888889998888888888999999999999999875
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.92 E-value=1.9e-25 Score=200.82 Aligned_cols=144 Identities=23% Similarity=0.269 Sum_probs=121.5
Q ss_pred CCceecCCCce--eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhhhce
Q psy310 33 TNNNCEPNEKT--ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRKLSC 104 (240)
Q Consensus 33 ~~~~~~~~~~~--~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~~~g 104 (240)
+|+.+.|++++ +|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++
T Consensus 7 ~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig 85 (353)
T 1oxx_K 7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL-DVPSTGELYFDDRLVASNGKLIVPPEDRKIG 85 (353)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS-SCCSEEEEEETTEEEEETTEESSCGGGSCEE
T ss_pred EeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCEECcccccccCChhhCCEE
Confidence 47888888888 99999999999999999999999999999999997 5688999999998753 234467899
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
||||++.+++.+|+.|++.+.... ........++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus 86 ~v~Q~~~l~~~ltv~eni~~~~~~---~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 86 MVFQTWALYPNLTAFENIAFPLTN---MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD 158 (353)
T ss_dssp EEETTSCCCTTSCHHHHHHGGGTT---SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred EEeCCCccCCCCCHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999874321 1234444566778889999998888888888999999999999999875
No 19
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.92 E-value=3.5e-25 Score=191.98 Aligned_cols=173 Identities=22% Similarity=0.305 Sum_probs=132.6
Q ss_pred cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
.-+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ....++.++|++
T Consensus 13 ~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~ 91 (266)
T 4g1u_C 13 EASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY-LSPSHGECHLLGQNLNSWQPKALARTRAVMR 91 (266)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS-SCCSSCEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred EEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCcEEEECCEECCcCCHHHHhheEEEEe
Confidence 346889999999999999999999999999999999999999999997 5678999999998763 234556799999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceee
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTIL 187 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 187 (240)
|++.+...+|++|++.+..... . ....++.+.++++.+++.+.........|++++|++.+++++..-..
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~-~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~----- 161 (266)
T 4g1u_C 92 QYSELAFPFSVSEVIQMGRAPY-G----GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ----- 161 (266)
T ss_dssp SCCCCCSCCBHHHHHHGGGTTS-C----STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC-----
T ss_pred cCCccCCCCCHHHHHHhhhhhc-C----cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc-----
Confidence 9999888899999998643211 1 11224456677888888777777777889999999999999986100
Q ss_pred ccceeEEeCCcEEEEEcCCCCC-----HHHHHHHHhCC
Q psy310 188 KSVSGRLRSGELTAIMGPSGAG-----KSTLLNILTGY 220 (240)
Q Consensus 188 ~~vsl~I~~Ge~valvG~NGsG-----KSTLlk~l~G~ 220 (240)
-.....+.|+.++-|| +..++++|..+
T Consensus 162 ------~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l 193 (266)
T 4g1u_C 162 ------PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQL 193 (266)
T ss_dssp ------SSCCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred ------cCCCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 0001467777777775 34456665554
No 20
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.92 E-value=4e-25 Score=190.54 Aligned_cols=148 Identities=20% Similarity=0.185 Sum_probs=118.4
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIM 107 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~ 107 (240)
-+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++||+
T Consensus 10 i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 88 (257)
T 1g6h_A 10 TENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF-LKADEGRVYFENKDITNKEPAELYHYGIVRTF 88 (257)
T ss_dssp EEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEECTTCCHHHHHHHTEEECC
T ss_pred EeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHHHhCCEEEEc
Confidence 35788899999999999999999999999999999999999999997 56789999999987632 12346799999
Q ss_pred ccccccccccHHHHHHHHHHH-hcCC---------CccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHH
Q psy310 108 QDNQLHANLTVEEAMNVATAL-KLGK---------DLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~-~~~~---------~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
|++.+++.+|+.|++.+.... .... .......++.+.++++.+++.+.........|++++|++.+++++
T Consensus 89 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL 168 (257)
T 1g6h_A 89 QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRAL 168 (257)
T ss_dssp CCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred cCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHH
Confidence 999999999999999764211 0010 011223345677788888888777777788899999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
...
T Consensus 169 ~~~ 171 (257)
T 1g6h_A 169 MTN 171 (257)
T ss_dssp HTC
T ss_pred HcC
Confidence 875
No 21
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.92 E-value=8.9e-25 Score=183.76 Aligned_cols=161 Identities=16% Similarity=0.248 Sum_probs=125.0
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
+|+.+.+++ ++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ..++.++||+|++.+
T Consensus 14 ~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl-~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~ 89 (214)
T 1sgw_A 14 RDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY-LKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIV 89 (214)
T ss_dssp EEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTEEGG--GGGGGEEEECSSCCC
T ss_pred EEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCeEEEECCEEhh--hhcCcEEEEeCCCcC
Confidence 578888988 999999999999999999999999999999999997 5678999999998764 356789999999999
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeecccee
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSG 192 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vsl 192 (240)
++.+|+.|++.+..... ..... .+.+.++++.+++.+. .......|++++|++.+++++...
T Consensus 90 ~~~~tv~enl~~~~~~~-~~~~~----~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~------------ 151 (214)
T 1sgw_A 90 PRKISVEDYLKAVASLY-GVKVN----KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVN------------ 151 (214)
T ss_dssp CTTSBHHHHHHHHHHHT-TCCCC----HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSC------------
T ss_pred CCCCCHHHHHHHHHHhc-CCchH----HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhC------------
Confidence 88999999998754322 10111 2345566777777666 666677889999999999999875
Q ss_pred EEeCCcEEEEEcCCCC-----CHHHHHHHHhCC
Q psy310 193 RLRSGELTAIMGPSGA-----GKSTLLNILTGY 220 (240)
Q Consensus 193 ~I~~Ge~valvG~NGs-----GKSTLlk~l~G~ 220 (240)
..+.|+.++-+ .+..++++|..+
T Consensus 152 -----p~lllLDEPts~LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 152 -----AEIYVLDDPVVAIDEDSKHKVLKSILEI 179 (214)
T ss_dssp -----CSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred -----CCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 23444444444 466666666554
No 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.92 E-value=1.5e-24 Score=194.57 Aligned_cols=140 Identities=21% Similarity=0.284 Sum_probs=118.0
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.|+++ +|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++||||++.
T Consensus 5 ~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~ 82 (348)
T 3d31_A 5 ESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF-HVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS 82 (348)
T ss_dssp EEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS-SCCSEEEEEETTEECTTSCHHHHTCEEECTTCC
T ss_pred EEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC-CCCCCcEEEECCEECCCCchhhCcEEEEecCcc
Confidence 4788899888 99999999999999999999999999999999997 5688999999998763 2344678999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+|+.|++.+....... .+. +.+.++++.+++.+...+.+...|++++|++.+++++...
T Consensus 83 l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 83 LFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp CCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred cCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999999999886533211 111 4567788888888877777888999999999999999875
No 23
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.91 E-value=7.7e-25 Score=224.39 Aligned_cols=91 Identities=25% Similarity=0.411 Sum_probs=78.9
Q ss_pred CCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310 32 NTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 32 ~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
-+|+.+.|++ .++|+++||+|++||+++||||||||||||+++|.|++ +|++|+|.++|.++. ...+++.++|
T Consensus 390 ~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~-~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 468 (1284)
T 3g5u_A 390 FKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY-DPLDGMVSIDGQDIRTINVRYLREIIGV 468 (1284)
T ss_dssp EEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS-CCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEHHhCCHHHHHhheEE
Confidence 4678888864 47999999999999999999999999999999999984 578999999998753 3556788999
Q ss_pred EcccccccccccHHHHHHH
Q psy310 106 IMQDNQLHANLTVEEAMNV 124 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~ 124 (240)
|+|++.++.. |++||+.+
T Consensus 469 v~Q~~~l~~~-ti~eNi~~ 486 (1284)
T 3g5u_A 469 VSQEPVLFAT-TIAENIRY 486 (1284)
T ss_dssp ECSSCCCCSS-CHHHHHHH
T ss_pred EcCCCccCCc-cHHHHHhc
Confidence 9999998865 99999875
No 24
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=2.1e-24 Score=184.32 Aligned_cols=143 Identities=17% Similarity=0.222 Sum_probs=113.7
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh-hhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~Q 108 (240)
+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... .. .++.++|++|
T Consensus 10 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 88 (240)
T 1ji0_A 10 QSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL-VRAQKGKIIFNGQDITNKPAHVINRMGIALVPE 88 (240)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEECTTCCHHHHHHTTEEEECS
T ss_pred EeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEECCCCCHHHHHhCCEEEEec
Confidence 5788889888999999999999999999999999999999999997 56789999999987632 11 2345999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCC-cchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD-TNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++.+++.+|+.|++.+... .. .......+.++++++.++ +.+.........|++++|++.+++++...
T Consensus 89 ~~~l~~~ltv~enl~~~~~--~~--~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 89 GRRIFPELTVYENLMMGAY--NR--KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp SCCCCTTSBHHHHHHGGGT--TC--CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred CCccCCCCcHHHHHHHhhh--cC--CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999999999986421 11 111223445566777774 66666667778899999999999999875
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.91 E-value=2.5e-24 Score=187.77 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=114.8
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-----chhhhhhceEE
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-----LSQFRKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-----~~~~~~~~g~v 106 (240)
-+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++||
T Consensus 24 ~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v 102 (279)
T 2ihy_A 24 LDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY-EPATSGTVNLFGKMPGKVGYSAETVRQHIGFV 102 (279)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTBCCC---CCHHHHHTTEEEE
T ss_pred EEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCeEEEECCEEcccccCCHHHHcCcEEEE
Confidence 45788999989999999999999999999999999999999999997 5678999999998753 23346779999
Q ss_pred ccccccc--ccccHHHHHHHHHHH--hcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQLH--ANLTVEEAMNVATAL--KLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~~~--~~ltv~e~l~~~~~~--~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++.+. ..+|++|++.+.... ....... ....+.+.++++.+++.+.........|++++|++.+++++...
T Consensus 103 ~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~ 179 (279)
T 2ihy_A 103 SHSLLEKFQEGERVIDVVISGAFKSIGVYQDID-DEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQ 179 (279)
T ss_dssp CHHHHTTSCTTSBHHHHHHTTC---------CC-HHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred EcCcccccCCCCCHHHHHHhhhhhccccccCCc-HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCC
Confidence 9998643 346999999763211 0000111 22345567788888888777777778899999999999999875
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.91 E-value=5.4e-24 Score=182.74 Aligned_cols=148 Identities=25% Similarity=0.231 Sum_probs=110.3
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEEEECCccCCc---hhh-hhhceEEc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSITINGHERNL---SQF-RKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V~v~g~~~~~---~~~-~~~~g~v~ 107 (240)
+|+.+.|+++++|+++||+|++||+++|+||||||||||+++|+|+. .+|++|+|.++|.+... ... +..++|++
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~ 86 (250)
T 2d2e_A 7 RDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF 86 (250)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCC
T ss_pred EeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEec
Confidence 57888898899999999999999999999999999999999999962 35689999999987632 111 33578999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc-chhhhhccCC-CCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT-NHAQRCFLSG-PWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 180 (240)
|++.+++.+++.+++.+................+.+.++++.+++ .+.....+.. .|++++|++.+++++...
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~ 161 (250)
T 2d2e_A 87 QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE 161 (250)
T ss_dssp CCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred cCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence 999999999999999875422111111222334556777888888 4666666666 899999999999999875
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.91 E-value=3.6e-24 Score=185.46 Aligned_cols=143 Identities=20% Similarity=0.160 Sum_probs=112.4
Q ss_pred CCceecCC--C---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEc
Q psy310 33 TNNNCEPN--E---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~~--~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~ 107 (240)
+|+.+.|+ + +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+......++.++||+
T Consensus 6 ~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-~~p~~G~I~~~g~~~~~~~~~~~i~~v~ 84 (266)
T 2yz2_A 6 VNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-IEPTSGDVLYDGERKKGYEIRRNIGIAF 84 (266)
T ss_dssp EEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEECCHHHHGGGEEEEC
T ss_pred EEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCcEEEECCEECchHHhhhhEEEEe
Confidence 46677776 4 6799999999999999999999999999999999997 5678999999998764324567799999
Q ss_pred ccc-cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc--hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDN-QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN--HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~-~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++ .++..+|+.|++.+...... ......+.+.++++.+++. +.....+...|++++|++.+++++...
T Consensus 85 q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~ 156 (266)
T 2yz2_A 85 QYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHE 156 (266)
T ss_dssp SSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred ccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 996 45667899999986421111 1111234466677888887 766777778899999999999999875
No 28
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.90 E-value=1.6e-24 Score=209.23 Aligned_cols=33 Identities=45% Similarity=0.608 Sum_probs=31.1
Q ss_pred eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218 (240)
Q Consensus 186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~ 218 (240)
+|++|||+|++||++||+|+||||||||+++|+
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 699999999999999999999999999998764
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.90 E-value=7.4e-24 Score=184.04 Aligned_cols=146 Identities=17% Similarity=0.191 Sum_probs=107.8
Q ss_pred cCCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhce
Q psy310 31 TNTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSC 104 (240)
Q Consensus 31 ~~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g 104 (240)
.-+|+.+.|++ +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.++. ....++.++
T Consensus 18 ~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 96 (271)
T 2ixe_A 18 KFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL-YQPTGGKVLLDGEPLVQYDHHYLHTQVA 96 (271)
T ss_dssp EEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEEGGGBCHHHHHHHEE
T ss_pred EEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCCEEEECCEEcccCCHHHHhccEE
Confidence 34688888876 7899999999999999999999999999999999997 5678999999998753 233456799
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccH---HHHHHHHHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTK---AARKDVVRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~---~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
||+|++.+++ .|+.|++.+... ....... ......+..+++.+ ++...........|++++|++.+++++..
T Consensus 97 ~v~Q~~~l~~-~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 97 AVGQEPLLFG-RSFRENIAYGLT--RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp EECSSCCCCS-SBHHHHHHTTCS--SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred EEecCCcccc-ccHHHHHhhhcc--cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 9999998876 599999975311 1000000 01111223344444 34444445566788999999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 174 ~ 174 (271)
T 2ixe_A 174 K 174 (271)
T ss_dssp C
T ss_pred C
Confidence 5
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.90 E-value=5.9e-23 Score=177.99 Aligned_cols=149 Identities=19% Similarity=0.192 Sum_probs=114.3
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEEEECCccCCc---hhh-hhhceEE
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSITINGHERNL---SQF-RKLSCYI 106 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V~v~g~~~~~---~~~-~~~~g~v 106 (240)
-+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+. .+|++|+|.++|.+... ... +..++|+
T Consensus 23 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 102 (267)
T 2zu0_C 23 IKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMA 102 (267)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEE
Confidence 467888998899999999999999999999999999999999999973 24679999999987531 112 2348999
Q ss_pred cccccccccccHHHHHHHHHH-Hh--cC-CCccHHHHHHHHHHhhhcCCcc-hhhhhccC-CCCCchhhHHHHHHHHhcc
Q psy310 107 MQDNQLHANLTVEEAMNVATA-LK--LG-KDLTKAARKDVVRTLFYRSDTN-HAQRCFLS-GPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~-~~--~~-~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 180 (240)
+|++.+++.+++.+++.+... .. .. .........+.++++++.+++. +.....+. ..|++++|++.+++++...
T Consensus 103 ~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~ 182 (267)
T 2zu0_C 103 FQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 182 (267)
T ss_dssp CSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHC
T ss_pred ccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999876431 11 11 1122333345677788888875 34455554 4899999999999999875
No 31
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.89 E-value=4.4e-23 Score=177.48 Aligned_cols=137 Identities=19% Similarity=0.228 Sum_probs=109.7
Q ss_pred CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310 33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.++ ++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.+ ++.++||+|++.
T Consensus 8 ~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~I~~----------~~~i~~v~q~~~ 76 (253)
T 2nq2_C 8 ENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI-HRPIQGKIEV----------YQSIGFVPQFFS 76 (253)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS-SCCSEEEEEE----------CSCEEEECSCCC
T ss_pred eeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEE----------eccEEEEcCCCc
Confidence 56788888 88999999999999999999999999999999999997 5678999982 356899999999
Q ss_pred ccccccHHHHHHHHHHHhcCCC-ccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKD-LTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+|+.|++.+......... .......+.+.++++.+++.+.........|++++|++.+++++...
T Consensus 77 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 146 (253)
T 2nq2_C 77 SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASE 146 (253)
T ss_dssp CSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 8889999999986421111100 01122345567788888888777777778899999999999999875
No 32
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.89 E-value=2e-23 Score=178.31 Aligned_cols=139 Identities=21% Similarity=0.263 Sum_probs=112.2
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~ 111 (240)
+|+.+.|+. +|+++||+|++ |+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++||+|++.
T Consensus 5 ~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 80 (240)
T 2onk_A 5 VRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI-VKPDRGEVRLNGADITPLPPERRGIGFVPQDYA 80 (240)
T ss_dssp EEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTSCTTTSCCBCCCSSCC
T ss_pred EEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECCcCchhhCcEEEEcCCCc
Confidence 467777865 59999999999 99999999999999999999997 5678999999998753 2234567999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+++.+|++|++.+... . ... ....+.++++++.+++.+.....+...|++++|++.+++++...
T Consensus 81 l~~~ltv~enl~~~~~--~-~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 81 LFPHLSVYRNIAYGLR--N-VER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CCTTSCHHHHHHTTCT--T-SCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCCcHHHHHHHHHH--H-cCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999999876321 1 111 11245677788888887777777778899999999999999875
No 33
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.89 E-value=3.6e-23 Score=177.40 Aligned_cols=137 Identities=22% Similarity=0.304 Sum_probs=103.2
Q ss_pred CCceecC--CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310 33 TNNNCEP--NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM 107 (240)
Q Consensus 33 ~~~~~~~--~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~ 107 (240)
+|+.+.| +++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++||+
T Consensus 11 ~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~ 89 (247)
T 2ff7_A 11 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF-YIPENGQVLIDGHDLALADPNWLRRQVGVVL 89 (247)
T ss_dssp EEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred EEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEEhhhCCHHHHHhcEEEEe
Confidence 5778888 467899999999999999999999999999999999997 5678999999998763 233567799999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhh-----------hccCCCCCchhhHHHHHHH
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR-----------CFLSGPWGTFESSVLLALA 176 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 176 (240)
|++.+++ .|+.|++.+.. ...... .+.++++.+++.+... ......|++++|++.++++
T Consensus 90 Q~~~l~~-~tv~enl~~~~-----~~~~~~----~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAra 159 (247)
T 2ff7_A 90 QDNVLLN-RSIIDNISLAN-----PGMSVE----KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 159 (247)
T ss_dssp SSCCCTT-SBHHHHHTTTC-----TTCCHH----HHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHH
T ss_pred CCCcccc-ccHHHHHhccC-----CCCCHH----HHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHH
Confidence 9998875 69999987531 111221 2223333333333222 2235678899999999999
Q ss_pred Hhcc
Q psy310 177 MYNR 180 (240)
Q Consensus 177 ~~~~ 180 (240)
++..
T Consensus 160 L~~~ 163 (247)
T 2ff7_A 160 LVNN 163 (247)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 9875
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.88 E-value=7e-23 Score=175.88 Aligned_cols=129 Identities=25% Similarity=0.300 Sum_probs=105.3
Q ss_pred eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcccccccccccHH
Q psy310 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVE 119 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~~~~~~~ltv~ 119 (240)
++|+++||+|++||+++|+|||||||||||++|+|+ .+|+ |+|.++|.+.. ....++.++|++|++.+++.+|++
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-SCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 689999999999999999999999999999999998 5567 99999998752 234566799999999988889999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhccc
Q psy310 120 EAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRI 181 (240)
Q Consensus 120 e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (240)
|++.+.. . .... .+.+.++++.+++.+.........|++++|++.+++++....
T Consensus 92 e~l~~~~---~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 92 HYLTLHQ---H-DKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp HHHHTTC---S-STTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhh---c-cCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9987531 1 1111 344666778888877777777788999999999999998763
No 35
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.9e-23 Score=198.34 Aligned_cols=56 Identities=27% Similarity=0.428 Sum_probs=47.5
Q ss_pred ccCCCceecCCCce-eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEE
Q psy310 30 NTNTNNNCEPNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI 87 (240)
Q Consensus 30 ~~~~~~~~~~~~~~-~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V 87 (240)
+-.+|+.++|+... .+++++ .+.+||++||+|||||||||||++|+|+ ..|++|+|
T Consensus 78 ~~~~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gl-l~P~~G~i 134 (608)
T 3j16_B 78 NLEAHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGK-QKPNLGRF 134 (608)
T ss_dssp SSSTTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS-SCCCTTTT
T ss_pred hhcCCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcC-CCCCCceE
Confidence 34578889998764 567666 6899999999999999999999999997 56788987
No 36
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.88 E-value=2.1e-23 Score=196.89 Aligned_cols=38 Identities=37% Similarity=0.611 Sum_probs=33.3
Q ss_pred eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
.|..++|+|++||++||+|+||||||||+++|+|+..|
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35556777999999999999999999999999999554
No 37
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.88 E-value=5.2e-23 Score=181.59 Aligned_cols=143 Identities=21% Similarity=0.227 Sum_probs=103.2
Q ss_pred cCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 31 TNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 31 ~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
.-+|+++.|+ ++++|+++||+|++||+++||||||||||||+++|+|+ ..|.+|+|.++|.++. ...+++.++||
T Consensus 55 ~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v 133 (306)
T 3nh6_A 55 EFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF-YDISSGCIRIDGQDISQVTQASLRSHIGVV 133 (306)
T ss_dssp EEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS-SCCSEEEEEETTEETTSBCHHHHHHTEEEE
T ss_pred EEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC-CCCCCcEEEECCEEcccCCHHHHhcceEEE
Confidence 3467888884 57899999999999999999999999999999999998 4578999999998763 34567889999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN 179 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (240)
+|++.++ ..|++|++.+... ........+.++.+ +..+ ++...........|++++|++.++++++.
T Consensus 134 ~Q~~~lf-~~Tv~eNi~~~~~-----~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 134 PQDTVLF-NDTIADNIRYGRV-----TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp CSSCCCC-SEEHHHHHHTTST-----TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred ecCCccC-cccHHHHHHhhcc-----cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 9999887 4699999975321 11222222222111 1111 11111122234578899999999999987
Q ss_pred c
Q psy310 180 R 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 208 ~ 208 (306)
T 3nh6_A 208 A 208 (306)
T ss_dssp C
T ss_pred C
Confidence 5
No 38
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.87 E-value=1e-22 Score=174.00 Aligned_cols=138 Identities=22% Similarity=0.301 Sum_probs=102.2
Q ss_pred CCceecC-CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310 33 TNNNCEP-NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~-~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q 108 (240)
+|+.+.| +++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++||+|
T Consensus 5 ~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 83 (243)
T 1mv5_A 5 RHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF-YQPTAGEITIDGQPIDNISLENWRSQIGFVSQ 83 (243)
T ss_dssp EEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS-SCCSBSCEEETTEESTTTSCSCCTTTCCEECC
T ss_pred EEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEEhhhCCHHHHHhhEEEEcC
Confidence 4677888 667899999999999999999999999999999999997 5678999999998753 2234677999999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-----------hhccCCCCCchhhHHHHHHHH
Q psy310 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-----------RCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 177 (240)
++.+++ .|+.|++.+.. . ....... +.++++.+++.+.. .......|++++|++.+++++
T Consensus 84 ~~~l~~-~tv~enl~~~~--~--~~~~~~~----~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral 154 (243)
T 1mv5_A 84 DSAIMA-GTIRENLTYGL--E--GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154 (243)
T ss_dssp SSCCCC-EEHHHHTTSCT--T--SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred CCcccc-ccHHHHHhhhc--c--CCCCHHH----HHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHH
Confidence 998876 59999987531 1 1122222 22333333332221 123356788999999999999
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
...
T Consensus 155 ~~~ 157 (243)
T 1mv5_A 155 LRN 157 (243)
T ss_dssp HHC
T ss_pred hcC
Confidence 875
No 39
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.87 E-value=1.9e-22 Score=174.55 Aligned_cols=136 Identities=23% Similarity=0.271 Sum_probs=108.6
Q ss_pred CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhce-EEc
Q psy310 33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSC-YIM 107 (240)
Q Consensus 33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g-~v~ 107 (240)
+|+.+.+++ +++|+++||+|+ ||+++|+|||||||||||++|+|+ . |++|+|.++|.+......++.++ |++
T Consensus 5 ~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl-~-p~~G~I~~~g~~~~~~~~~~~i~~~v~ 81 (263)
T 2pjz_A 5 KNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-L-PYSGNIFINGMEVRKIRNYIRYSTNLP 81 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS-S-CCEEEEEETTEEGGGCSCCTTEEECCG
T ss_pred EEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC-C-CCCcEEEECCEECcchHHhhheEEEeC
Confidence 456777776 789999999999 999999999999999999999998 5 78999999997653111256789 999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|++.+ .+|+.|++.+..... ... .+.+.++++.+++. +.........|++++|++.+++++...
T Consensus 82 Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 82 EAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp GGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred CCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99887 889999998754322 111 23456677777877 666667777899999999999999875
No 40
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.86 E-value=2.7e-22 Score=182.41 Aligned_cols=136 Identities=21% Similarity=0.251 Sum_probs=107.5
Q ss_pred cCCCceecC--CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310 31 TNTNNNCEP--NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 31 ~~~~~~~~~--~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
.-+|+.+.| +++.+|+++||+|++||+++|+|||||||||||++|+|+ .+ ++|+|.++|.++. ....++.++|
T Consensus 21 ~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-~~-~~G~I~i~G~~i~~~~~~~~rr~ig~ 98 (390)
T 3gd7_A 21 TVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-LN-TEGEIQIDGVSWDSITLEQWRKAFGV 98 (390)
T ss_dssp EEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC-SE-EEEEEEESSCBTTSSCHHHHHHTEEE
T ss_pred EEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC-CC-CCeEEEECCEECCcCChHHHhCCEEE
Confidence 456888999 678899999999999999999999999999999999998 44 7899999998763 2345678999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCC-----------CCCchhhHHHHH
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSG-----------PWGTFESSVLLA 174 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 174 (240)
|||++.+++ +|+++++.+. ..... +.+.++++.+++.+...+++.. .|++++|++.++
T Consensus 99 v~Q~~~lf~-~tv~enl~~~------~~~~~----~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA 167 (390)
T 3gd7_A 99 IPQKVFIFS-GTFRKNLDPN------AAHSD----QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167 (390)
T ss_dssp ESCCCCCCS-EEHHHHHCTT------CCSCH----HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH
T ss_pred EcCCcccCc-cCHHHHhhhc------cccCH----HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHH
Confidence 999998886 6999988521 11122 2344566667776665555544 789999999999
Q ss_pred HHHhc
Q psy310 175 LAMYN 179 (240)
Q Consensus 175 ~~~~~ 179 (240)
++++.
T Consensus 168 RAL~~ 172 (390)
T 3gd7_A 168 RSVLS 172 (390)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 98765
No 41
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.86 E-value=2.2e-21 Score=164.40 Aligned_cols=131 Identities=21% Similarity=0.250 Sum_probs=93.5
Q ss_pred CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccc
Q psy310 32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQD 109 (240)
Q Consensus 32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~ 109 (240)
-+|+.+.++ ++++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++| .++|++|+
T Consensus 9 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g----------~i~~v~q~ 77 (229)
T 2pze_A 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-LEPSEGKIKHSG----------RISFCSQF 77 (229)
T ss_dssp EEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEECS----------CEEEECSS
T ss_pred EEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CcCCccEEEECC----------EEEEEecC
Confidence 357778884 57899999999999999999999999999999999997 567899999987 38999999
Q ss_pred ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHH-----hhhcCCcch--hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRT-----LFYRSDTNH--AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~-----l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
+.+++. |++|++.+.. . .......+..+. .+..+.... .........|++++|++.+++++...
T Consensus 78 ~~~~~~-tv~enl~~~~----~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 78 SWIMPG-TIKENIIFGV----S--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp CCCCSB-CHHHHHHTTS----C--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred CcccCC-CHHHHhhccC----C--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 988775 9999987531 1 111111111111 111111000 01112346788999999999999875
No 42
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.85 E-value=3e-21 Score=166.62 Aligned_cols=137 Identities=23% Similarity=0.231 Sum_probs=100.6
Q ss_pred CCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310 32 NTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 32 ~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
-+|+.+.|++ +++|+++||+|++||+++|+|||||||||||++|+|++. + +|+|.++|.+.. ....++.++|
T Consensus 20 i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g~~i~~~~~~~~~~~i~~ 97 (260)
T 2ghi_A 20 FSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIGGKNVNKYNRNSIRSIIGI 97 (260)
T ss_dssp EEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEETTEEGGGBCHHHHHTTEEE
T ss_pred EEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEECCEEhhhcCHHHHhccEEE
Confidence 3577888875 469999999999999999999999999999999999854 5 899999998753 2345677999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-----------hhccCCCCCchhhHHHHH
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-----------RCFLSGPWGTFESSVLLA 174 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 174 (240)
|+|++.++. .|++|++.+.. . ...... +.++++.+++.+.. .......|++++|++.++
T Consensus 98 v~Q~~~l~~-~tv~enl~~~~---~--~~~~~~----~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 98 VPQDTILFN-ETIKYNILYGK---L--DATDEE----VIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA 167 (260)
T ss_dssp ECSSCCCCS-EEHHHHHHTTC---T--TCCHHH----HHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred EcCCCcccc-cCHHHHHhccC---C--CCCHHH----HHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence 999998875 69999987531 1 112221 22233333322211 123456788999999999
Q ss_pred HHHhcc
Q psy310 175 LAMYNR 180 (240)
Q Consensus 175 ~~~~~~ 180 (240)
++++..
T Consensus 168 raL~~~ 173 (260)
T 2ghi_A 168 RCLLKD 173 (260)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 999875
No 43
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.84 E-value=8e-21 Score=161.79 Aligned_cols=130 Identities=23% Similarity=0.292 Sum_probs=94.5
Q ss_pred CCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310 33 TNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110 (240)
Q Consensus 33 ~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~ 110 (240)
+|+.+.|+ ++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++| .++||+|++
T Consensus 7 ~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~I~~~g----------~i~~v~Q~~ 75 (237)
T 2cbz_A 7 RNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE-MDKVEGHVAIKG----------SVAYVPQQA 75 (237)
T ss_dssp EEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC-SEEEEEEEEECS----------CEEEECSSC
T ss_pred EEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECC----------EEEEEcCCC
Confidence 46778887 57899999999999999999999999999999999997 557899999988 289999998
Q ss_pred cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHH--hhhcCCcch-----hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRT--LFYRSDTNH-----AQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~--l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
.+ ..+|+.|++.+.. .. ......+..+. +.+.++... .........|++++|++.+++++...
T Consensus 76 ~~-~~~tv~enl~~~~--~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 145 (237)
T 2cbz_A 76 WI-QNDSLRENILFGC--QL----EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 145 (237)
T ss_dssp CC-CSEEHHHHHHTTS--CC----CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred cC-CCcCHHHHhhCcc--cc----CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 65 5789999987531 11 11111111111 111111110 12234556788999999999999875
No 44
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.82 E-value=3.3e-20 Score=176.58 Aligned_cols=140 Identities=19% Similarity=0.242 Sum_probs=105.7
Q ss_pred cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310 31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
.-+|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ....++.++|
T Consensus 343 ~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 421 (582)
T 3b60_A 343 EFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF-YDIDEGHILMDGHDLREYTLASLRNQVAL 421 (582)
T ss_dssp EEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT-TCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred EEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc-cCCCCCeEEECCEEccccCHHHHHhhCeE
Confidence 34678888873 7899999999999999999999999999999999998 5578999999998763 3446778999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh-----------ccCCCCCchhhHHHHH
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC-----------FLSGPWGTFESSVLLA 174 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 174 (240)
|+|++.+++ .|++|++.+... ....++ .+.++++..++.+.... .....|++++|++.++
T Consensus 422 v~Q~~~l~~-~tv~eni~~~~~----~~~~~~----~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 422 VSQNVHLFN-DTVANNIAYART----EEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp ECSSCCCCS-SBHHHHHHTTTT----SCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred EccCCcCCC-CCHHHHHhccCC----CCCCHH----HHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 999999886 499999976310 112222 23334444444332222 2245778999999999
Q ss_pred HHHhcc
Q psy310 175 LAMYNR 180 (240)
Q Consensus 175 ~~~~~~ 180 (240)
+++...
T Consensus 493 ral~~~ 498 (582)
T 3b60_A 493 RALLRD 498 (582)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999875
No 45
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.82 E-value=3.4e-20 Score=176.49 Aligned_cols=140 Identities=22% Similarity=0.284 Sum_probs=105.0
Q ss_pred cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310 31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
.-+|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ....++.++|
T Consensus 343 ~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 421 (582)
T 3b5x_A 343 DVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF-YDVDSGSICLDGHDVRDYKLTNLRRHFAL 421 (582)
T ss_pred EEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCCEEEECCEEhhhCCHHHHhcCeEE
Confidence 34678888874 6899999999999999999999999999999999998 4578999999998753 3456778999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh-----------ccCCCCCchhhHHHHH
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC-----------FLSGPWGTFESSVLLA 174 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 174 (240)
|+|++.+++ .|++|++.+... ....++ .+.++++..++.+.... .....|++++|++.++
T Consensus 422 v~Q~~~l~~-~tv~eni~~~~~----~~~~~~----~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 422 VSQNVHLFN-DTIANNIAYAAE----GEYTRE----QIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred EcCCCcccc-ccHHHHHhccCC----CCCCHH----HHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence 999999886 599999976320 112222 23334444443332222 2245778999999999
Q ss_pred HHHhcc
Q psy310 175 LAMYNR 180 (240)
Q Consensus 175 ~~~~~~ 180 (240)
+++...
T Consensus 493 ral~~~ 498 (582)
T 3b5x_A 493 RALLRD 498 (582)
T ss_pred HHHHcC
Confidence 999875
No 46
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=7.9e-21 Score=181.07 Aligned_cols=143 Identities=19% Similarity=0.258 Sum_probs=103.2
Q ss_pred cCCCceecC--CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310 31 TNTNNNCEP--NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 31 ~~~~~~~~~--~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
.-+|+++.| +++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ...+++.++|
T Consensus 343 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~-~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 421 (587)
T 3qf4_A 343 SFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL-IDPERGRVEVDELDVRTVKLKDLRGHISA 421 (587)
T ss_dssp EEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS-SCCSEEEEEESSSBGGGBCHHHHHHHEEE
T ss_pred EEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-ccCCCcEEEECCEEcccCCHHHHHhheEE
Confidence 346778888 457899999999999999999999999999999999998 5578999999998763 3456788999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
|+|++.++. .|++||+.+.. .........+.++.. +..+ +............|++++|++.++++++
T Consensus 422 v~Q~~~lf~-~tv~eni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 422 VPQETVLFS-GTIKENLKWGR-----EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp ECSSCCCCS-EEHHHHHTTTC-----SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred ECCCCcCcC-ccHHHHHhccC-----CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 999999885 49999987531 112222222222211 1111 1121222233457889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 496 ~~ 497 (587)
T 3qf4_A 496 KK 497 (587)
T ss_dssp TC
T ss_pred cC
Confidence 75
No 47
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.81 E-value=1.1e-20 Score=179.62 Aligned_cols=143 Identities=24% Similarity=0.297 Sum_probs=102.5
Q ss_pred cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310 31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
.-+|+++.+++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ....++.++|
T Consensus 341 ~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-~~p~~G~i~~~g~~~~~~~~~~~r~~i~~ 419 (578)
T 4a82_A 341 DIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF-YDVTSGQILIDGHNIKDFLTGSLRNQIGL 419 (578)
T ss_dssp EEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS-SCCSEEEEEETTEEGGGSCHHHHHHTEEE
T ss_pred EEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC-CCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 34677888864 6799999999999999999999999999999999998 5578999999998763 3456778999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (240)
|+|++.++.. |++||+.+.. .........+.++.. +..+ +............|++++|++.++++++
T Consensus 420 v~Q~~~l~~~-tv~eni~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 420 VQQDNILFSD-TVKENILLGR-----PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp ECSSCCCCSS-BHHHHHGGGC-----SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred EeCCCccCcc-cHHHHHhcCC-----CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH
Confidence 9999998865 9999987531 111222222222211 1110 1111111222357889999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 494 ~~ 495 (578)
T 4a82_A 494 NN 495 (578)
T ss_dssp HC
T ss_pred cC
Confidence 75
No 48
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.81 E-value=7e-20 Score=174.72 Aligned_cols=141 Identities=21% Similarity=0.244 Sum_probs=103.8
Q ss_pred CCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310 32 NTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 32 ~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
-+|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ....++.++|
T Consensus 344 ~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~-~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 422 (595)
T 2yl4_A 344 FKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL-YDPASGTISLDGHDIRQLNPVWLRSKIGT 422 (595)
T ss_dssp EEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS-SCCSEEEEEETTEETTTBCHHHHHHSEEE
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cCCCCcEEEECCEEhhhCCHHHHHhceEE
Confidence 4678888864 4799999999999999999999999999999999998 5578999999998763 2445678999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-------hh----ccCCCCCchhhHHHHH
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-------RC----FLSGPWGTFESSVLLA 174 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~ 174 (240)
|+|++.+++ .|++|++.+... ......++. +.++++..++.+.. +. .....|++++|++.++
T Consensus 423 v~Q~~~l~~-~tv~eni~~~~~--~~~~~~~~~----~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iA 495 (595)
T 2yl4_A 423 VSQEPILFS-CSIAENIAYGAD--DPSSVTAEE----IQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA 495 (595)
T ss_dssp ECSSCCCCS-SBHHHHHHTTSS--STTTSCHHH----HHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHH
T ss_pred EccCCcccC-CCHHHHHhhcCC--CccccCHHH----HHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 999999886 599999976321 000122222 33333333332221 11 1245788999999999
Q ss_pred HHHhcc
Q psy310 175 LAMYNR 180 (240)
Q Consensus 175 ~~~~~~ 180 (240)
+++...
T Consensus 496 ral~~~ 501 (595)
T 2yl4_A 496 RALLKN 501 (595)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 999875
No 49
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=4.5e-20 Score=176.16 Aligned_cols=139 Identities=20% Similarity=0.298 Sum_probs=102.9
Q ss_pred cCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310 31 TNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI 106 (240)
Q Consensus 31 ~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v 106 (240)
.-+|+++.++ ++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.. ...+++.++||
T Consensus 356 ~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v 434 (598)
T 3qf4_B 356 EFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF-YDVDRGQILVDGIDIRKIKRSSLRSSIGIV 434 (598)
T ss_dssp EEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS-SCCSEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-cCCCCeEEEECCEEhhhCCHHHHHhceEEE
Confidence 3467788886 46799999999999999999999999999999999998 5578999999998763 34567889999
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh-----------ccCCCCCchhhHHHHHH
Q psy310 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC-----------FLSGPWGTFESSVLLAL 175 (240)
Q Consensus 107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 175 (240)
+|++.++. .|++||+.+.. ....... +.+.++..++.+.... .....|++++|++.+++
T Consensus 435 ~Q~~~lf~-~tv~eni~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 435 LQDTILFS-TTVKENLKYGN-----PGATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504 (598)
T ss_dssp CTTCCCCS-SBHHHHHHSSS-----TTCCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred eCCCcccc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 99998875 59999987531 1111111 2223333333222111 12346889999999999
Q ss_pred HHhcc
Q psy310 176 AMYNR 180 (240)
Q Consensus 176 ~~~~~ 180 (240)
+++..
T Consensus 505 al~~~ 509 (598)
T 3qf4_B 505 AFLAN 509 (598)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 99875
No 50
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.79 E-value=2.1e-19 Score=157.42 Aligned_cols=123 Identities=21% Similarity=0.294 Sum_probs=85.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
+|+.+. .+++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++| .++|++|++.+
T Consensus 44 ~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-~~p~~G~I~~~g----------~i~~v~Q~~~l 110 (290)
T 2bbs_A 44 SNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-LEPSEGKIKHSG----------RISFCSQNSWI 110 (290)
T ss_dssp --------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS-SCEEEEEEECCS----------CEEEECSSCCC
T ss_pred EEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCcEEEECC----------EEEEEeCCCcc
Confidence 455553 46799999999999999999999999999999999997 567899999987 37999999988
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-----------hhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-----------RCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
++. |+.|++. . .. ....... .++...++.+.. .......|++++|++.++++++..
T Consensus 111 ~~~-tv~enl~-~--~~----~~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 111 MPG-TIKENII-G--VS----YDEYRYR----SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp CSS-BHHHHHH-T--TC----CCHHHHH----HHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred Ccc-cHHHHhh-C--cc----cchHHHH----HHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 774 9999986 2 11 1111111 111222221111 112346788999999999999875
No 51
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.74 E-value=1.4e-18 Score=178.63 Aligned_cols=141 Identities=23% Similarity=0.290 Sum_probs=102.8
Q ss_pred cCCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---Cchhhhhhce
Q psy310 31 TNTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSC 104 (240)
Q Consensus 31 ~~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g 104 (240)
.-+|++.+|.+ .++|+++||+|++||++|||||||||||||+++|.|++ .|.+|+|.++|.++ ....+|+.++
T Consensus 1078 ~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p~~G~I~iDG~di~~i~~~~lR~~i~ 1156 (1321)
T 4f4c_A 1078 IFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY-DTLGGEIFIDGSEIKTLNPEHTRSQIA 1156 (1321)
T ss_dssp EEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS-CCSSSEEEETTEETTTBCHHHHHTTEE
T ss_pred EEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc-cCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 34678888854 46999999999999999999999999999999999985 47899999999876 3567889999
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-------hhcc----CCCCCchhhHHHH
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-------RCFL----SGPWGTFESSVLL 173 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-------~~~~----~~~~~~~~~~~~~ 173 (240)
||+|+|.++. .|++||+.+... ....+.++..+.++ ..++.+.- +..+ ...|++++|++.+
T Consensus 1157 ~V~Qdp~LF~-gTIreNI~~gld---~~~~sd~ei~~Al~----~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriai 1228 (1321)
T 4f4c_A 1157 IVSQEPTLFD-CSIAENIIYGLD---PSSVTMAQVEEAAR----LANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAI 1228 (1321)
T ss_dssp EECSSCCCCS-EEHHHHHSSSSC---TTTSCHHHHHHHHH----HTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHH
T ss_pred EECCCCEeeC-ccHHHHHhccCC---CCCCCHHHHHHHHH----HhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHH
Confidence 9999998875 599999864310 11223333333333 22222111 1111 2356788999999
Q ss_pred HHHHhcc
Q psy310 174 ALAMYNR 180 (240)
Q Consensus 174 ~~~~~~~ 180 (240)
|+++.+.
T Consensus 1229 ARAllr~ 1235 (1321)
T 4f4c_A 1229 ARALVRN 1235 (1321)
T ss_dssp HHHHHSC
T ss_pred HHHHHhC
Confidence 9998764
No 52
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.74 E-value=5.6e-18 Score=174.17 Aligned_cols=143 Identities=24% Similarity=0.346 Sum_probs=102.6
Q ss_pred cCCCceecCC---CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---Cchhhhhhce
Q psy310 31 TNTNNNCEPN---EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSC 104 (240)
Q Consensus 31 ~~~~~~~~~~---~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g 104 (240)
.-+|+...|. ++++|+|+||+|++||+++||||+|||||||+++|.|++ .|.+|+|.++|.++ ....+++.++
T Consensus 417 ~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~-~~~~G~I~idG~~i~~~~~~~lr~~i~ 495 (1321)
T 4f4c_A 417 TVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-DVLKGKITIDGVDVRDINLEFLRKNVA 495 (1321)
T ss_dssp EEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred EEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc-ccccCcccCCCccchhccHHHHhhccc
Confidence 3457777774 468999999999999999999999999999999999985 57899999999875 3466788999
Q ss_pred EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCC---cchhhhhcc----CCCCCchhhHHHHHHHH
Q psy310 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD---TNHAQRCFL----SGPWGTFESSVLLALAM 177 (240)
Q Consensus 105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~ 177 (240)
||+|+|.++ ..|++||+.+.. +....+...+.++....... +++.....+ ...+++++||+.+|+++
T Consensus 496 ~v~Q~~~Lf-~~TI~eNI~~g~-----~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl 569 (1321)
T 4f4c_A 496 VVSQEPALF-NCTIEENISLGK-----EGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL 569 (1321)
T ss_dssp EECSSCCCC-SEEHHHHHHTTC-----TTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH
T ss_pred ccCCcceee-CCchhHHHhhhc-----ccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH
Confidence 999999886 469999997631 12233333333322110000 111111111 23678899999999998
Q ss_pred hcc
Q psy310 178 YNR 180 (240)
Q Consensus 178 ~~~ 180 (240)
+..
T Consensus 570 ~~~ 572 (1321)
T 4f4c_A 570 VRN 572 (1321)
T ss_dssp TTC
T ss_pred ccC
Confidence 864
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.72 E-value=2.3e-17 Score=157.64 Aligned_cols=130 Identities=22% Similarity=0.197 Sum_probs=101.7
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~ 111 (240)
-.|+.+.+++. .|+.++|+|.+||+++|+|||||||||||++|+|+ .+|++|+|.+ ...++|++|++.
T Consensus 360 ~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl-~~p~~G~I~~----------~~~i~~v~Q~~~ 427 (607)
T 3bk7_A 360 YPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV-EEPTEGKVEW----------DLTVAYKPQYIK 427 (607)
T ss_dssp ECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS-SCCSBSCCCC----------CCCEEEECSSCC
T ss_pred EeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEE----------eeEEEEEecCcc
Confidence 35677777664 68999999999999999999999999999999997 5678999875 235899999988
Q ss_pred ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
....+|+.+++........ ...+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus 428 ~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 428 AEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp CCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 7778899887654211110 1123456677777777777777778899999999999999875
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.72 E-value=3.3e-17 Score=154.63 Aligned_cols=129 Identities=22% Similarity=0.204 Sum_probs=101.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
.|+.+.+++ ..|+.++|+|++||++||+|||||||||||++|+|+ .+|.+|+|.+ ...++|++|++..
T Consensus 291 ~~l~~~~~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-~~p~~G~i~~----------~~~i~~v~Q~~~~ 358 (538)
T 1yqt_A 291 PRLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV-EEPTEGKIEW----------DLTVAYKPQYIKA 358 (538)
T ss_dssp CCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS-SCCSBCCCCC----------CCCEEEECSSCCC
T ss_pred eeEEEEECC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEE----------CceEEEEecCCcC
Confidence 456666665 368999999999999999999999999999999997 5678999875 1358999999887
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
...+|+.+++......... ..+.++++++.+++.+.....+...|++++|++.+++++...
T Consensus 359 ~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 359 DYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp CCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred CCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 7788998876542111111 123566788888887776777778899999999999999875
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.70 E-value=1.2e-17 Score=171.30 Aligned_cols=144 Identities=16% Similarity=0.199 Sum_probs=100.5
Q ss_pred CCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310 32 NTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY 105 (240)
Q Consensus 32 ~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~ 105 (240)
-+|+...|++ .++|+++||+|++||++||+||||||||||+++|.|+ .+|.+|+|.++|.++. ...+++.++|
T Consensus 1033 ~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 1111 (1284)
T 3g5u_A 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF-YDPMAGSVFLDGKEIKQLNVQWLRAQLGI 1111 (1284)
T ss_dssp EEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS-SCCSEEEEESSSSCTTSSCHHHHTTSCEE
T ss_pred EEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cCCCCCEEEECCEEcccCCHHHHHhceEE
Confidence 3567777764 3699999999999999999999999999999999998 5578999999998763 3456788999
Q ss_pred EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhh--hcC-Ccchhhhh----ccCCCCCchhhHHHHHHHHh
Q psy310 106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF--YRS-DTNHAQRC----FLSGPWGTFESSVLLALAMY 178 (240)
Q Consensus 106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~--~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 178 (240)
|+|++.++ ..|++||+.+... ..........+.++... +.. .+.+..+. .....|++++|++.+++++.
T Consensus 1112 v~Q~~~l~-~~ti~eNi~~~~~---~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~ 1187 (1284)
T 3g5u_A 1112 VSQEPILF-DCSIAENIAYGDN---SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187 (1284)
T ss_dssp EESSCCCC-SSBHHHHHTCCCS---SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH
T ss_pred ECCCCccc-cccHHHHHhccCC---CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH
Confidence 99999776 5699999875311 11122222222222211 000 01111111 12346788999999999998
Q ss_pred cc
Q psy310 179 NR 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 1188 ~~ 1189 (1284)
T 3g5u_A 1188 RQ 1189 (1284)
T ss_dssp HC
T ss_pred cC
Confidence 75
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.69 E-value=9.3e-17 Score=151.52 Aligned_cols=131 Identities=21% Similarity=0.246 Sum_probs=102.0
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
.|+.+.+++ ..|+.++|+|++||++||+||||||||||+++|+|+ .+|++|+|.+.+. .++|++|+...
T Consensus 273 ~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~~~---------~i~~~~q~~~~ 341 (538)
T 3ozx_A 273 TKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE-ITADEGSVTPEKQ---------ILSYKPQRIFP 341 (538)
T ss_dssp CCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTS-SCCSBCCEESSCC---------CEEEECSSCCC
T ss_pred cceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCe---------eeEeechhccc
Confidence 455666665 457888999999999999999999999999999997 5678999987652 47899998776
Q ss_pred cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
....++.+++.... ...... ....++++++.+++.+.....+...|++++|++.+++++...
T Consensus 342 ~~~~tv~~~l~~~~----~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 342 NYDGTVQQYLENAS----KDALST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp CCSSBHHHHHHHHC----SSTTCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred ccCCCHHHHHHHhh----hhccch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 66789999876521 111111 123456788888888777777888999999999999999875
No 57
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.65 E-value=5.7e-18 Score=159.24 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=62.6
Q ss_pred CceecCCCceeeeeeEE-EEeCCCEEEEECCCCchHHHHHHH--HhCCCCCCCccEEEECCccCCc--hhhhhhceEEcc
Q psy310 34 NNNCEPNEKTILKSVSG-RLRSGELTAIMGPSGAGKSTLLNI--LTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQ 108 (240)
Q Consensus 34 ~~~~~~~~~~~L~~vsl-~I~~Ge~vgLvG~NGSGKSTLLr~--L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q 108 (240)
+++.-+++.++|++++| .|++||+++|+||||||||||+++ ++|+ .++.+|.|.+.|.+... ...++.++|++|
T Consensus 17 ~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl-~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q 95 (525)
T 1tf7_A 17 AIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI-IEFDEPGVFVTFEETPQDIIKNARSFGWDLA 95 (525)
T ss_dssp SCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSSCHHHHHHHHGGGTCCHH
T ss_pred ccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-HhCCCCEEEEEEeCCHHHHHHHHHHcCCChH
Confidence 45556777889999999 999999999999999999999999 7897 44578999999987421 223456789998
Q ss_pred ccc
Q psy310 109 DNQ 111 (240)
Q Consensus 109 ~~~ 111 (240)
++.
T Consensus 96 ~~~ 98 (525)
T 1tf7_A 96 KLV 98 (525)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.59 E-value=2e-15 Score=150.18 Aligned_cols=59 Identities=32% Similarity=0.420 Sum_probs=53.1
Q ss_pred CCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC
Q psy310 32 NTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91 (240)
Q Consensus 32 ~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g 91 (240)
-.|+.+.|++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.+++
T Consensus 674 v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl-l~P~sG~I~~~~ 734 (986)
T 2iw3_A 674 VTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE-LLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS-SCCSEEEEEECT
T ss_pred EEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEEcC
Confidence 3577888865 6899999999999999999999999999999999997 567899999976
No 59
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.58 E-value=1.5e-17 Score=133.27 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=70.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
.++.+.++++.+++++||+|++|++++|+||||||||||+|+|+|++ |.+|+|.+.|.++... . ....+++|++.+
T Consensus 11 ~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~~~-~-~~~~~~~q~~~l 86 (158)
T 1htw_A 11 EFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLVEE-Y-NIAGKMIYHFDL 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCEEE-E-EETTEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeeeee-c-cCCCcceecccc
Confidence 45567777788999999999999999999999999999999999974 6889999998775311 1 111389999888
Q ss_pred cccccHHHHHH
Q psy310 113 HANLTVEEAMN 123 (240)
Q Consensus 113 ~~~ltv~e~l~ 123 (240)
+ .+++.+++.
T Consensus 87 ~-~ltv~e~l~ 96 (158)
T 1htw_A 87 Y-RLADPEELE 96 (158)
T ss_dssp T-TCSCTTHHH
T ss_pred c-cCCcHHHHH
Confidence 7 888877764
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.55 E-value=9.4e-15 Score=139.57 Aligned_cols=129 Identities=18% Similarity=0.121 Sum_probs=95.4
Q ss_pred CceecCCC-ceeeeeeEEEEeCC-----CEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEc
Q psy310 34 NNNCEPNE-KTILKSVSGRLRSG-----ELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107 (240)
Q Consensus 34 ~~~~~~~~-~~~L~~vsl~I~~G-----e~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~ 107 (240)
++.+.+.. ..++++++|+|.+| |+++|+|||||||||||++|+|+ .+|++|+. . ....++|++
T Consensus 351 ~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl-~~p~~G~~------~----~~~~i~~~~ 419 (608)
T 3j16_B 351 SRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA-LKPDEGQD------I----PKLNVSMKP 419 (608)
T ss_dssp SSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTS-SCCSBCCC------C----CSCCEEEEC
T ss_pred ceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcC-CCCCCCcC------c----cCCcEEEec
Confidence 34445544 45789999999999 88999999999999999999997 56788862 1 123579999
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310 108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR 180 (240)
Q Consensus 108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (240)
|+.......++.+++... .. ..... ...++.+++.+++.+.....+...|++++|++.+++++...
T Consensus 420 q~~~~~~~~tv~e~~~~~--~~-~~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~ 485 (608)
T 3j16_B 420 QKIAPKFPGTVRQLFFKK--IR-GQFLN----PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIP 485 (608)
T ss_dssp SSCCCCCCSBHHHHHHHH--CS-STTTS----HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSC
T ss_pred ccccccCCccHHHHHHHH--hh-ccccc----HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 987766667888866421 11 11111 12345667777777777778888999999999999999875
No 61
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.40 E-value=3.2e-14 Score=119.08 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=44.3
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEccccccccc
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHAN 115 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q~~~~~~~ 115 (240)
..-|++|||+|++|++++|+||||||||||+++|+|++ | |.|.+ |.+... ...++.++|++|++.+++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS--T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34699999999999999999999999999999999974 3 88988 654321 1124568899998765543
No 62
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.36 E-value=1.2e-13 Score=127.14 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=75.8
Q ss_pred cccCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc---cCCc--------
Q psy310 29 TNTNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNL-------- 96 (240)
Q Consensus 29 ~~~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~---~~~~-------- 96 (240)
.-.-.++++.++ +..+|+++ |+|.+||+++|+|||||||||||++|+|+ ..++.|.|.+.|. +...
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~-~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY-TRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred ceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc-cCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 345567888887 67899999 99999999999999999999999999997 5678999999997 3311
Q ss_pred hhhhhhceEEccc-ccccccccHHHHHHHH
Q psy310 97 SQFRKLSCYIMQD-NQLHANLTVEEAMNVA 125 (240)
Q Consensus 97 ~~~~~~~g~v~Q~-~~~~~~ltv~e~l~~~ 125 (240)
..+++.++|++|+ ....+.+++.+++.+.
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ 238 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRI 238 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 2245678999994 5556677888776653
No 63
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.35 E-value=1.9e-13 Score=115.96 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=46.9
Q ss_pred cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccccccccc
Q psy310 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLT 117 (240)
Q Consensus 38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~lt 117 (240)
..+++++|+++||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|+. ++..++
T Consensus 8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-----G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-----GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp ---------------CCSEEEEEECSTTSSHHHHHHHHHHHH-----TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-----chhccc-------ccCCceEEEeCCc-CccccC
Confidence 456778999999999999999999999999999999999963 333332 2356789999995 666788
Q ss_pred HHHHHHH
Q psy310 118 VEEAMNV 124 (240)
Q Consensus 118 v~e~l~~ 124 (240)
+.++..+
T Consensus 75 ~~~~~~~ 81 (245)
T 2jeo_A 75 AEQKAKA 81 (245)
T ss_dssp HHHHHHH
T ss_pred HhHhhhh
Confidence 8887754
No 64
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.32 E-value=9.1e-13 Score=110.90 Aligned_cols=48 Identities=42% Similarity=0.598 Sum_probs=42.0
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+|+|+|+..| +++++
T Consensus 14 y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 63 (224)
T 2pcj_A 14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63 (224)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEE
T ss_pred ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 4456799999999999999999999999999999999999554 46644
No 65
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.32 E-value=1.1e-12 Score=113.31 Aligned_cols=49 Identities=45% Similarity=0.752 Sum_probs=42.9
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
.++++.+|+++||+|++||++||+|+||||||||+|+|+|+..| +++++
T Consensus 20 ~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 70 (266)
T 4g1u_C 20 HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70 (266)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEE
T ss_pred EeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 35567899999999999999999999999999999999999554 46654
No 66
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.31 E-value=3.3e-13 Score=118.61 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=65.1
Q ss_pred eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-------hh--hhhceEEccccc-ccc
Q psy310 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-------QF--RKLSCYIMQDNQ-LHA 114 (240)
Q Consensus 45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-------~~--~~~~g~v~Q~~~-~~~ 114 (240)
+++++|++++|++++|+||||||||||+++|+|++ .+.+|+|.+.|.+.... .+ +..++|++|++. +.+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 45789999999999999999999999999999974 46789999999876421 11 246899999988 888
Q ss_pred cccHHHHHHHHH
Q psy310 115 NLTVEEAMNVAT 126 (240)
Q Consensus 115 ~ltv~e~l~~~~ 126 (240)
.+++.+++.++.
T Consensus 169 ~~~v~e~l~~~~ 180 (302)
T 3b9q_A 169 ATVLSKAVKRGK 180 (302)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889999887643
No 67
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.31 E-value=1.4e-12 Score=110.86 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=42.1
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+|+|+|+..| +++++
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (240)
T 1ji0_A 16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65 (240)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred ECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 4456799999999999999999999999999999999999544 56654
No 68
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.30 E-value=1.2e-12 Score=112.37 Aligned_cols=48 Identities=38% Similarity=0.675 Sum_probs=42.2
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+|+|+|+..| +++++
T Consensus 17 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 66 (257)
T 1g6h_A 17 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66 (257)
T ss_dssp ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred ECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 4556799999999999999999999999999999999999554 46644
No 69
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.30 E-value=3e-12 Score=123.47 Aligned_cols=36 Identities=42% Similarity=0.569 Sum_probs=32.7
Q ss_pred CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 76 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~ 76 (240)
...+|++|||+|++||+++|+||||||||||+++|.
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 345799999999999999999999999999998754
No 70
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.30 E-value=1.3e-12 Score=112.46 Aligned_cols=48 Identities=31% Similarity=0.465 Sum_probs=42.5
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|++||++||+|+||||||||+|+|+|+..| +++++
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 65 (262)
T 1b0u_A 16 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 65 (262)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 4556799999999999999999999999999999999999554 57755
No 71
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.30 E-value=6e-15 Score=136.69 Aligned_cols=69 Identities=17% Similarity=0.107 Sum_probs=57.2
Q ss_pred eeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc-E-EEECCccCCchhhhhhceEEccccccc---ccccHHHH
Q psy310 47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG-S-ITINGHERNLSQFRKLSCYIMQDNQLH---ANLTVEEA 121 (240)
Q Consensus 47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G-~-V~v~g~~~~~~~~~~~~g~v~Q~~~~~---~~ltv~e~ 121 (240)
+++|+|++||+++|+||||||||||+|+|+|+ ..+++| + |.++|. .++.++|++|+..++ ..+++.++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl-~~p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~en 202 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY-ALKFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQLP 202 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT-THHHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTCT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCc-ccccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhhh
Confidence 79999999999999999999999999999997 557899 8 999882 256789999987543 34566665
Q ss_pred H
Q psy310 122 M 122 (240)
Q Consensus 122 l 122 (240)
+
T Consensus 203 i 203 (460)
T 2npi_A 203 T 203 (460)
T ss_dssp T
T ss_pred h
Confidence 5
No 72
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.30 E-value=1.5e-12 Score=110.31 Aligned_cols=45 Identities=40% Similarity=0.661 Sum_probs=40.4
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+.+|+++||+|.+||++||+||||||||||+++|+|+..| +++++
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 64 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYI 64 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE
Confidence 4699999999999999999999999999999999999554 46655
No 73
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.29 E-value=1.6e-12 Score=112.16 Aligned_cols=49 Identities=31% Similarity=0.563 Sum_probs=43.0
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
.++++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..| +++++
T Consensus 33 ~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 83 (263)
T 2olj_A 33 SFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 83 (263)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Confidence 34566799999999999999999999999999999999999554 57765
No 74
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.29 E-value=1.8e-12 Score=112.65 Aligned_cols=49 Identities=41% Similarity=0.541 Sum_probs=43.0
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
.++++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..| +++++
T Consensus 30 ~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 80 (279)
T 2ihy_A 30 MKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80 (279)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE
Confidence 35567899999999999999999999999999999999999554 57755
No 75
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.29 E-value=1.8e-12 Score=111.40 Aligned_cols=48 Identities=35% Similarity=0.541 Sum_probs=42.2
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..| +++++
T Consensus 25 y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 74 (256)
T 1vpl_A 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74 (256)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred ECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 4566799999999999999999999999999999999999554 56654
No 76
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.28 E-value=4.4e-13 Score=110.82 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=44.5
Q ss_pred CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHH
Q psy310 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEE 120 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e 120 (240)
..+++++ .+|++||+++|+||||||||||+++|+|+++ ...+.+.+.+.... ...++.++|+||++..++.+++.+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcC
Confidence 3456777 6999999999999999999999999999743 32222222121111 122456899999987766555544
Q ss_pred H
Q psy310 121 A 121 (240)
Q Consensus 121 ~ 121 (240)
+
T Consensus 84 ~ 84 (207)
T 1znw_A 84 E 84 (207)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.27 E-value=2.6e-14 Score=119.24 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=48.8
Q ss_pred cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110 (240)
Q Consensus 38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~ 110 (240)
.++.+.+|+++ ++||+++|+|||||||||||++|+|+ +|++|+|............++.++|++|++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl--~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ--ALQSKQVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH--HHHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC--CCcCCeeeeEEecCCchhhhcceEEecCCH
Confidence 34556788885 89999999999999999999999996 577898842101111123456799999986
No 78
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.27 E-value=2.2e-12 Score=107.97 Aligned_cols=47 Identities=23% Similarity=0.505 Sum_probs=41.1
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+++ .+|+++||+|.+||+++|+|+||||||||+++|+|+..| +++++
T Consensus 20 y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 68 (214)
T 1sgw_A 20 YDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 68 (214)
T ss_dssp SSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred eCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 445 799999999999999999999999999999999999554 46644
No 79
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.27 E-value=2.6e-12 Score=108.41 Aligned_cols=41 Identities=32% Similarity=0.554 Sum_probs=38.1
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
++.+|+++||+|++||+++|+|+||||||||+++|+|+..|
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 46799999999999999999999999999999999999554
No 80
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.27 E-value=2.1e-12 Score=111.45 Aligned_cols=49 Identities=39% Similarity=0.598 Sum_probs=42.3
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc----ccchhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK----ILRQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~----~~~~~~~ 228 (240)
.++++.+|+++||+|++||+++|+|+||||||||+|+|+|+. ..+++++
T Consensus 29 ~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~ 81 (267)
T 2zu0_C 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 81 (267)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred EECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE
Confidence 345678999999999999999999999999999999999982 2356655
No 81
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.27 E-value=3e-12 Score=111.12 Aligned_cols=45 Identities=33% Similarity=0.548 Sum_probs=39.8
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
..+|+++||+|++||+++|+||||||||||+|+|+|+..| +++++
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~ 67 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEE
Confidence 4599999999999999999999999999999999999544 45544
No 82
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.27 E-value=3.1e-12 Score=109.20 Aligned_cols=46 Identities=33% Similarity=0.581 Sum_probs=41.0
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++.+|+++||+|.+||++||+|+||||||||+++|+|+..| +++++
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i 68 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI 68 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 46799999999999999999999999999999999999554 46654
No 83
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.26 E-value=3.3e-12 Score=109.47 Aligned_cols=41 Identities=34% Similarity=0.617 Sum_probs=38.4
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
++.+|+++||+|.+||+++|+|+||||||||+++|+|+..|
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56799999999999999999999999999999999999554
No 84
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.26 E-value=2.9e-12 Score=109.04 Aligned_cols=47 Identities=28% Similarity=0.502 Sum_probs=41.3
Q ss_pred ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+++.+|+++||+|.+||+++|+|+||||||||+++|+|+..| +++++
T Consensus 13 ~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 346799999999999999999999999999999999999554 56654
No 85
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.26 E-value=3.1e-12 Score=108.53 Aligned_cols=41 Identities=29% Similarity=0.433 Sum_probs=38.2
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
++.+|+++||+|.+||+++|+|+||||||||+++|+|+..|
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 36799999999999999999999999999999999999654
No 86
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.25 E-value=4e-12 Score=108.68 Aligned_cols=48 Identities=48% Similarity=0.641 Sum_probs=41.3
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC--cc--cchhhh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KI--LRQLWL 228 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~--~~--~~~~~~ 228 (240)
++++.+|+++||+|++||+++|+|+||||||||+|+|+|+ .. .+++++
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~ 64 (250)
T 2d2e_A 13 IDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILL 64 (250)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred ECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence 4556799999999999999999999999999999999997 33 346644
No 87
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.25 E-value=1.2e-12 Score=117.69 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=60.3
Q ss_pred eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC-CchhhhhhceEEc-ccccc--cccccHHH
Q psy310 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER-NLSQFRKLSCYIM-QDNQL--HANLTVEE 120 (240)
Q Consensus 45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~-~~~~~~~~~g~v~-Q~~~~--~~~ltv~e 120 (240)
+++++|.|++|++++|+||||||||||+++|+|++ ++.+|.|.+.+... .....+..+++++ |++.. +...++++
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~ 243 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-PFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAAT 243 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-CTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-CCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHH
Confidence 39999999999999999999999999999999984 56899999987532 2222456788999 77654 36778899
Q ss_pred HHHHHH
Q psy310 121 AMNVAT 126 (240)
Q Consensus 121 ~l~~~~ 126 (240)
+++.+.
T Consensus 244 ~i~~~l 249 (361)
T 2gza_A 244 LLRSCL 249 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 888653
No 88
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.24 E-value=4.1e-12 Score=109.90 Aligned_cols=45 Identities=31% Similarity=0.525 Sum_probs=40.5
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+..| +++++
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~ 78 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 6799999999999999999999999999999999999654 46644
No 89
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.24 E-value=1.9e-13 Score=120.26 Aligned_cols=52 Identities=27% Similarity=0.258 Sum_probs=46.4
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEE
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI 89 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v 89 (240)
+|+.+.++ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|..
T Consensus 105 ~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~ 156 (305)
T 2v9p_A 105 QNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLS 156 (305)
T ss_dssp TTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEEC
T ss_pred EEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEE
Confidence 56777776 67999999999999999999999999999999999984 788864
No 90
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.24 E-value=4.5e-12 Score=113.80 Aligned_cols=49 Identities=35% Similarity=0.592 Sum_probs=43.0
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
.++++.+|+++||+|.+||+++|+||||||||||+|+|+|+..| +++++
T Consensus 13 ~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (359)
T 3fvq_A 13 SFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63 (359)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE
Confidence 45667899999999999999999999999999999999999554 46644
No 91
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.23 E-value=1.6e-12 Score=116.75 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=66.0
Q ss_pred eeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-------hh--hhhceEEccccc-cccc
Q psy310 46 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-------QF--RKLSCYIMQDNQ-LHAN 115 (240)
Q Consensus 46 ~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-------~~--~~~~g~v~Q~~~-~~~~ 115 (240)
.+++|++++|++++|+||||||||||+++|+|++ .+.+|+|.+.+.+.... .+ +..++|++|++. +.+.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc-cccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 4688999999999999999999999999999974 46789999999876421 11 346899999987 7888
Q ss_pred ccHHHHHHHHH
Q psy310 116 LTVEEAMNVAT 126 (240)
Q Consensus 116 ltv~e~l~~~~ 126 (240)
.++.+++.++.
T Consensus 227 ~tv~e~l~~~~ 237 (359)
T 2og2_A 227 TVLSKAVKRGK 237 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 88999887653
No 92
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.23 E-value=5.6e-12 Score=108.73 Aligned_cols=45 Identities=36% Similarity=0.480 Sum_probs=40.1
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+.+|+++||+|++||+++|+|+||||||||+|+|+|+..| +++++
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~ 66 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY 66 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 5799999999999999999999999999999999999554 45644
No 93
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.22 E-value=8.3e-14 Score=127.31 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=76.5
Q ss_pred CceeeeeeEEEEeCCC--------------------EEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhh
Q psy310 41 EKTILKSVSGRLRSGE--------------------LTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge--------------------~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~ 100 (240)
.+.+|++++|+|++|+ +++|+||||||||||+++|+|+ .++++|+|.++|.+..
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl-~~p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI-GNEEEGAAKTGVVEVT----- 108 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC-CTTSTTSCCCCC---------
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC-CCccCceEEECCeecc-----
Confidence 3568999999999999 9999999999999999999997 5678999999886542
Q ss_pred hhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCc--hhhHHHHHHHHh
Q psy310 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGT--FESSVLLALAMY 178 (240)
Q Consensus 101 ~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 178 (240)
..++++|++ .++.+++.|+..+. .. +..+.++++.+++.+...... .+.+ +++++.++.++.
T Consensus 109 -~~~~v~q~~-~~~~ltv~D~~g~~----~~--------~~~~~~~L~~~~L~~~~~~~~--lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 109 -MERHPYKHP-NIPNVVFWDLPGIG----ST--------NFPPDTYLEKMKFYEYDFFII--ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp -CCCEEEECS-SCTTEEEEECCCGG----GS--------SCCHHHHHHHTTGGGCSEEEE--EESSCCCHHHHHHHHHHH
T ss_pred -eeEEecccc-ccCCeeehHhhccc----ch--------HHHHHHHHHHcCCCccCCeEE--eCCCCccHHHHHHHHHHH
Confidence 137888875 34556655543221 00 112333444444443322211 3333 677777777765
Q ss_pred c
Q psy310 179 N 179 (240)
Q Consensus 179 ~ 179 (240)
.
T Consensus 173 ~ 173 (413)
T 1tq4_A 173 M 173 (413)
T ss_dssp H
T ss_pred h
Confidence 5
No 94
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.21 E-value=7e-12 Score=113.35 Aligned_cols=49 Identities=33% Similarity=0.634 Sum_probs=43.0
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
.+++..+|+++||+|++||+++|+||||||||||+|+|+|+..| +++++
T Consensus 12 ~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 62 (381)
T 3rlf_A 12 AWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62 (381)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEE
Confidence 45677899999999999999999999999999999999999554 46644
No 95
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.21 E-value=2.6e-12 Score=119.52 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=66.5
Q ss_pred eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-------h--hhhhceEEccccccccc
Q psy310 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-------Q--FRKLSCYIMQDNQLHAN 115 (240)
Q Consensus 45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-------~--~~~~~g~v~Q~~~~~~~ 115 (240)
-+++||++.+|++++|+|+||||||||+++|+|++ .+..|+|.+.+.+.... . .+..++|++|+..+.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh-hhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 36799999999999999999999999999999974 46789999987665321 1 24568999999887788
Q ss_pred ccHHHHHHHHH
Q psy310 116 LTVEEAMNVAT 126 (240)
Q Consensus 116 ltv~e~l~~~~ 126 (240)
.++.+++.+..
T Consensus 362 ~tV~e~l~~a~ 372 (503)
T 2yhs_A 362 SVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88999888764
No 96
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.20 E-value=9.7e-12 Score=111.71 Aligned_cols=49 Identities=31% Similarity=0.534 Sum_probs=42.7
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
.++++.+|+++||+|++||+++|+||||||||||+|+|+|+..| +++++
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (359)
T 2yyz_A 12 YFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62 (359)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEE
Confidence 34566799999999999999999999999999999999999554 56654
No 97
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.20 E-value=9.6e-12 Score=106.38 Aligned_cols=44 Identities=41% Similarity=0.653 Sum_probs=39.6
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc-chhhh
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL-RQLWL 228 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~-~~~~~ 228 (240)
.+|+++||+|++||+++|+|+||||||||+|+|+|+..| +++++
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~ 58 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEE
Confidence 589999999999999999999999999999999999443 77754
No 98
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.19 E-value=9.8e-12 Score=111.51 Aligned_cols=47 Identities=32% Similarity=0.724 Sum_probs=41.4
Q ss_pred ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..| +++++
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 74 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Confidence 456799999999999999999999999999999999999554 45644
No 99
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.19 E-value=1e-11 Score=111.70 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=40.4
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
..+|+++||+|.+||++||+|+||||||||+|+|+|+..| +++++
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i 87 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 87 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 4699999999999999999999999999999999999655 46654
No 100
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.19 E-value=1.2e-11 Score=111.30 Aligned_cols=49 Identities=33% Similarity=0.626 Sum_probs=42.6
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
.++++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..| +++++
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (362)
T 2it1_A 12 KFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62 (362)
T ss_dssp ESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 34566799999999999999999999999999999999999554 46654
No 101
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.19 E-value=1.2e-11 Score=111.53 Aligned_cols=49 Identities=31% Similarity=0.596 Sum_probs=42.6
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
.++++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..| +++++
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (372)
T 1g29_1 12 VFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62 (372)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE
Confidence 34566799999999999999999999999999999999999554 46654
No 102
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.18 E-value=1.2e-11 Score=106.32 Aligned_cols=45 Identities=29% Similarity=0.415 Sum_probs=39.7
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc-chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL-RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~-~~~~~ 228 (240)
+.+|+++||+|++||+++|+|+||||||||+++|+|+..+ +++++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i 78 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKI 78 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEE
Confidence 4699999999999999999999999999999999998433 46644
No 103
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.18 E-value=1.3e-11 Score=111.46 Aligned_cols=49 Identities=27% Similarity=0.581 Sum_probs=42.7
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
.++++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..| +++++
T Consensus 20 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 70 (372)
T 1v43_A 20 RFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70 (372)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEE
Confidence 35566799999999999999999999999999999999999554 46654
No 104
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.17 E-value=1.3e-11 Score=107.78 Aligned_cols=45 Identities=29% Similarity=0.504 Sum_probs=40.1
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW 227 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~ 227 (240)
.+.+|+++||+|.+||+++|+|+||||||||+|+|+|+..| ++++
T Consensus 50 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~ 96 (290)
T 2bbs_A 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96 (290)
T ss_dssp CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEE
T ss_pred CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 35799999999999999999999999999999999999654 4554
No 105
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.16 E-value=1.1e-11 Score=109.09 Aligned_cols=45 Identities=36% Similarity=0.525 Sum_probs=40.2
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW 227 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~ 227 (240)
++.+|+++||+|++||++||+|+||||||||+++|+|+..| ++|+
T Consensus 66 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~ 112 (306)
T 3nh6_A 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR 112 (306)
T ss_dssp TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEE
Confidence 46799999999999999999999999999999999999655 3553
No 106
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.16 E-value=1.8e-11 Score=105.49 Aligned_cols=44 Identities=30% Similarity=0.606 Sum_probs=39.1
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc-ccchhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-ILRQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~-~~~~~~~ 228 (240)
+.+|+++||+|. ||+++|+|+||||||||+|+|+|+. ..+++++
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~ 62 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFI 62 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEE
Confidence 679999999999 9999999999999999999999996 2246644
No 107
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.15 E-value=4e-12 Score=101.55 Aligned_cols=52 Identities=17% Similarity=0.059 Sum_probs=42.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc-ccchhhhccCC
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-ILRQLWLLEYS 232 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~-~~~~~~~~~~~ 232 (240)
++++.+++++||+|++||+++|+|+||||||||+|+|+|+. ..++++.+.++
T Consensus 17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~ 69 (158)
T 1htw_A 17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYT 69 (158)
T ss_dssp HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTT
T ss_pred HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEe
Confidence 34567899999999999999999999999999999999974 33566554443
No 108
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.15 E-value=1e-11 Score=111.28 Aligned_cols=48 Identities=33% Similarity=0.654 Sum_probs=41.8
Q ss_pred cccce--eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 181 IHEKT--ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 181 ~~~~~--il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
++++. +|+++||+|.+||+++|+||||||||||+|+|+|+..| +++++
T Consensus 13 y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 64 (353)
T 1oxx_K 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (353)
T ss_dssp EGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred ECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 44566 99999999999999999999999999999999999554 46644
No 109
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.15 E-value=1.4e-11 Score=110.25 Aligned_cols=48 Identities=31% Similarity=0.638 Sum_probs=41.6
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
.++++ +|+++||+|++||+++|+|+||||||||+|+|+|+..| +++++
T Consensus 10 ~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~ 59 (348)
T 3d31_A 10 KWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59 (348)
T ss_dssp ECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred EECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Confidence 34456 99999999999999999999999999999999999554 46654
No 110
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.15 E-value=2.3e-12 Score=111.48 Aligned_cols=67 Identities=22% Similarity=0.189 Sum_probs=40.0
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310 57 LTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 124 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~ 124 (240)
.++||||||||||||+++|+|+ ..+.+|+|.+.|.+......++.++|++|++.+...+|+.+++.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~-~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~ 70 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS-QVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGF 70 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH-HC------------CCCCCSCCEEEESCC----CCEEEEECCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC-CCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhh
Confidence 4799999999999999999997 567899999999876443445678999999888777777665543
No 111
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.14 E-value=4.4e-13 Score=119.47 Aligned_cols=83 Identities=12% Similarity=0.152 Sum_probs=67.9
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhhhhce
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFRKLSC 104 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~~~~g 104 (240)
.+++.+.++.+.+|++++|++.+|++++|+|+||||||||+++|+|+ ..+.+|+|.+.+.+... ...+..++
T Consensus 32 ~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~-~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~ 110 (337)
T 2qm8_A 32 SRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL-LTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA 110 (337)
T ss_dssp CSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH-HHHTTCCEEEEEECGGGGSSCCCSSCCGGGST
T ss_pred eCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh-hhhCCCEEEEEEEcCcccccccchHHHhhhhe
Confidence 45667777777899999999999999999999999999999999997 45678999998876521 12356789
Q ss_pred EEccccccccc
Q psy310 105 YIMQDNQLHAN 115 (240)
Q Consensus 105 ~v~Q~~~~~~~ 115 (240)
+++|++.++..
T Consensus 111 ~v~q~~~~~~~ 121 (337)
T 2qm8_A 111 RLAIDRNAFIR 121 (337)
T ss_dssp TGGGCTTEEEE
T ss_pred eeccCcccccc
Confidence 99999877653
No 112
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.14 E-value=8.4e-12 Score=115.99 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=46.7
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER 94 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~ 94 (240)
..+|+++||+|++ |+++|+|||||||||||++|+|+ .+|.+|+|.++|.+.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA-LIPDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH-HCCCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC-CCCCCCEEEECCEEc
Confidence 4579999999999 99999999999999999999997 567899999998764
No 113
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.14 E-value=3.2e-11 Score=108.18 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=77.2
Q ss_pred eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEEEEC-CccCCchhhhhhceEEcccccccccccHHHHH
Q psy310 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITIN-GHERNLSQFRKLSCYIMQDNQLHANLTVEEAM 122 (240)
Q Consensus 45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v~-g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l 122 (240)
++++++. .+|++++|+||||||||||+++|+|. .. +..|.|.+. |.... ......+++++|+..+++.+++.+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~-~~~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGL-QNEILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCC-SSCCCCC--------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcc-ccccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh-
Confidence 4455553 48999999999999999999999997 55 778999886 64432 1234567999999888888887773
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHH
Q psy310 123 NVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
.+ ..+........+.++++.+++.+...+.....+ +..+++.++.++
T Consensus 282 ------~l-~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 ------GL-WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp ------CC-CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred ------hh-cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 11 123444445556667777777666666666566 667777665543
No 114
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.13 E-value=2.1e-11 Score=107.12 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=58.6
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hh---h--hhhceEEcccccccccccHHHHHHH
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQ---F--RKLSCYIMQDNQLHANLTVEEAMNV 124 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~---~--~~~~g~v~Q~~~~~~~ltv~e~l~~ 124 (240)
+|++++|+||||||||||+++|+|++ .+.+|+|.+.|.+... .+ + +..++|++|++...+..++.+++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll-~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY-QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 79999999999999999999999974 4679999999987632 11 1 3458999999888888888888775
Q ss_pred HH
Q psy310 125 AT 126 (240)
Q Consensus 125 ~~ 126 (240)
+.
T Consensus 180 ~~ 181 (304)
T 1rj9_A 180 MK 181 (304)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 115
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.12 E-value=8.6e-12 Score=104.67 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=49.0
Q ss_pred EEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEEEECCccCCchhhhhhceEEcccccccccccH
Q psy310 50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTV 118 (240)
Q Consensus 50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv 118 (240)
-..++|++++|+||||||||||+++|+|++++ +..|.|.+.+++... ..+..++|+||++..++.+++
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~ 79 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMIS 79 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHH
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHh
Confidence 35689999999999999999999999997443 368888887765422 123568899998766554443
No 116
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.11 E-value=5.8e-12 Score=110.65 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=69.3
Q ss_pred CceecCCCceeeeeeEEEE-------------------eCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEEEE---C
Q psy310 34 NNNCEPNEKTILKSVSGRL-------------------RSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITI---N 90 (240)
Q Consensus 34 ~~~~~~~~~~~L~~vsl~I-------------------~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v---~ 90 (240)
|+.+.| .++++++++.+ .+|+++||+|+||||||||+++|+|++.. |.+|.|.+ +
T Consensus 42 ~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 42 EVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp HHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred hHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 344444 36888999888 89999999999999999999999996331 67899999 7
Q ss_pred CccCCchhhhhhceEEcccccccccccHHHHHHHHHHH
Q psy310 91 GHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 128 (240)
Q Consensus 91 g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~ 128 (240)
|..... ..++.++++ |...+...+++.+++.+...+
T Consensus 120 ~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 120 GFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp GGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 765432 234557788 777777888998888765443
No 117
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.10 E-value=1.4e-11 Score=110.23 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=54.1
Q ss_pred ccCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310 30 NTNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93 (240)
Q Consensus 30 ~~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~ 93 (240)
-.-+++.+.++ +..+++++ |.|.+||+++|+||||||||||+++|+|+ ..++.|.|.+.|..
T Consensus 46 i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~-~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 46 LLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG-ASADIIVLALIGER 108 (347)
T ss_dssp TTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEESCC
T ss_pred eeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC-CCCCEEEEEEeccc
Confidence 44567777887 67899999 99999999999999999999999999997 55788999888854
No 118
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.09 E-value=5.4e-11 Score=101.13 Aligned_cols=42 Identities=26% Similarity=0.483 Sum_probs=37.6
Q ss_pred eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
+|+++||+|++ |+++|+|+||||||||+|+|+|+..| +++++
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 59999999999 99999999999999999999999554 46654
No 119
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.09 E-value=5.5e-11 Score=107.92 Aligned_cols=47 Identities=26% Similarity=0.409 Sum_probs=40.9
Q ss_pred ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-cchhhh
Q psy310 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-LRQLWL 228 (240)
Q Consensus 182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-~~~~~~ 228 (240)
+++.+|+++||+|++||+++|+||||||||||+|+|+|+.. .+++++
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i 79 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQI 79 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEE
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEE
Confidence 45679999999999999999999999999999999999843 345644
No 120
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.08 E-value=2.3e-11 Score=99.29 Aligned_cols=65 Identities=23% Similarity=0.267 Sum_probs=44.1
Q ss_pred EEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcccccccccccH
Q psy310 49 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTV 118 (240)
Q Consensus 49 sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q~~~~~~~ltv 118 (240)
|+++.+|++++|+||||||||||+++|+|++ + .+.+.+..... ...+..++|++|++..+..+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK 68 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHh
Confidence 5778899999999999999999999999973 2 35555543321 1124467899998766555443
No 121
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.08 E-value=1.3e-11 Score=109.61 Aligned_cols=77 Identities=16% Similarity=0.354 Sum_probs=59.0
Q ss_pred eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEcccccccccccHHHH
Q psy310 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQLHANLTVEEA 121 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~~~~~ltv~e~ 121 (240)
+++++++|.|++|++++|+||||||||||+++|+|+ .+|.+|.|.++|.+.. ....+..++++++ ...+.+..
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~-~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-----gg~~~r~~ 232 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF-IPKEERIISIEDTEEIVFKHHKNYTQLFFG-----GNITSADC 232 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG-SCTTSCEEEEESSCCCCCSSCSSEEEEECB-----TTBCHHHH
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC-CcCCCcEEEECCeeccccccchhEEEEEeC-----CChhHHHH
Confidence 378999999999999999999999999999999998 4568999999886431 2223455667764 34556665
Q ss_pred HHHH
Q psy310 122 MNVA 125 (240)
Q Consensus 122 l~~~ 125 (240)
++.+
T Consensus 233 la~a 236 (330)
T 2pt7_A 233 LKSC 236 (330)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 122
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.07 E-value=3e-11 Score=100.86 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=28.8
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccchhhh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWL 228 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~~~~ 228 (240)
...-|+++||+|.+|++++|+||||||||||+++|+|+. ++++++
T Consensus 9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-pG~i~~ 53 (218)
T 1z6g_A 9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-PNYFYF 53 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHHHS-TTTEEE
T ss_pred ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-CCcEEE
Confidence 345799999999999999999999999999999999986 466654
No 123
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.03 E-value=1.4e-11 Score=112.79 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=49.9
Q ss_pred eecCCCceeeeeeEEEEeCCCE--EEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccccc
Q psy310 36 NCEPNEKTILKSVSGRLRSGEL--TAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLH 113 (240)
Q Consensus 36 ~~~~~~~~~L~~vsl~I~~Ge~--vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~ 113 (240)
.+.|++.+ |+++||+|++|++ ++||||||||||||+++|+|+. ..|...... .....++.++|++|++.++
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~---l~g~~~~~~---~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK---FEGEPATHT---QPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC---C-------C---CSSCEEEEEEEEEEC--CE
T ss_pred EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc---ccCCcCCCC---CccceEeeEEEEeecCccc
Confidence 56777777 9999999999999 9999999999999999999972 123211110 0111234688999987765
Q ss_pred ccccHHH
Q psy310 114 ANLTVEE 120 (240)
Q Consensus 114 ~~ltv~e 120 (240)
+.+++.+
T Consensus 95 ~~ltv~D 101 (427)
T 2qag_B 95 LKLTIVS 101 (427)
T ss_dssp EEEEEEE
T ss_pred cccchhh
Confidence 5555443
No 124
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.03 E-value=7.4e-11 Score=106.88 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=56.5
Q ss_pred CCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-------------------------------------C
Q psy310 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-------------------------------------S 81 (240)
Q Consensus 39 ~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-------------------------------------~ 81 (240)
..+..+|++++|++.+| +++|+|||||||||||++|.++.. .
T Consensus 45 i~nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~ 123 (415)
T 4aby_A 45 IRNLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSS 123 (415)
T ss_dssp EEEETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEET
T ss_pred hccccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEec
Confidence 34456799999999999 999999999999999999977532 1
Q ss_pred CCccEEEECCccCCch---hhh-hhceEEccccccc
Q psy310 82 GTEGSITINGHERNLS---QFR-KLSCYIMQDNQLH 113 (240)
Q Consensus 82 ~~~G~V~v~g~~~~~~---~~~-~~~g~v~Q~~~~~ 113 (240)
+..|.+.++|.+.... .+. ..+.+++|++.+.
T Consensus 124 ~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~ 159 (415)
T 4aby_A 124 AGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVS 159 (415)
T ss_dssp TSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTT
T ss_pred CCceEEEECCEECCHHHHHHHHhhceEEecCccccc
Confidence 3367899999876532 222 3378999986544
No 125
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.02 E-value=2.8e-11 Score=106.76 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=46.4
Q ss_pred EeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHH
Q psy310 52 LRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMN 123 (240)
Q Consensus 52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~ 123 (240)
+++|+++||+||||||||||+++|+|++. +..|. ..+++|+|++.+++. ++.+++.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~-~~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA-RWDHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH-TSTTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc-ccCCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 78999999999999999999999999743 44442 347899999988776 8887764
No 126
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.02 E-value=1e-10 Score=93.95 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=28.4
Q ss_pred eeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310 47 SVSGRLRSGELTAIMGPSGAGKSTLLNILT 76 (240)
Q Consensus 47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~ 76 (240)
++||+|++||+++|+||||||||||++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 589999999999999999999999999865
No 127
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.01 E-value=1.1e-10 Score=114.93 Aligned_cols=35 Identities=37% Similarity=0.548 Sum_probs=32.3
Q ss_pred eeeeeeEEEEeCCCEEEEECCCCchHHHHHHH-HhC
Q psy310 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNI-LTG 77 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~-L~G 77 (240)
.+|++|||+|++||++||+|+||||||||+++ |+|
T Consensus 511 ~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 511 NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 36999999999999999999999999999996 664
No 128
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.00 E-value=7.2e-11 Score=103.51 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=47.8
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEE---CCccCCch--hhh-hhceEEccccccc-----ccccHH
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI---NGHERNLS--QFR-KLSCYIMQDNQLH-----ANLTVE 119 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v---~g~~~~~~--~~~-~~~g~v~Q~~~~~-----~~ltv~ 119 (240)
++.+|++++|+||||||||||+++|+ + ..+..|+|.+ .|...... ..+ +.++|++|.|.+. +.+++
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~-~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-G-EELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-S-CCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-H-hhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 34579999999999999999999999 7 5678999999 77654321 112 3589999998653 56777
Q ss_pred HHH
Q psy310 120 EAM 122 (240)
Q Consensus 120 e~l 122 (240)
+++
T Consensus 238 e~l 240 (302)
T 2yv5_A 238 REV 240 (302)
T ss_dssp GGG
T ss_pred HHH
Confidence 554
No 129
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.00 E-value=9.4e-11 Score=94.73 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=48.8
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-hhhhhceEEcccccccccccHHHHHHH
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-QFRKLSCYIMQDNQLHANLTVEEAMNV 124 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-~~~~~~g~v~Q~~~~~~~ltv~e~l~~ 124 (240)
.+.+|++++|+||||||||||+++|+|. +..|.|.+++.+.... ..+...+|++|++. ...++.+++..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~ 74 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAAD 74 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHH
Confidence 4789999999999999999999999996 4579999988653110 11233567777543 34556665543
No 130
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.99 E-value=2.3e-09 Score=106.41 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=29.6
Q ss_pred CceeeeeeEEEEeCCCEEEEECCCCchHHHHH
Q psy310 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 72 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLL 72 (240)
....|++|||+|++|++++|+|+||||||||+
T Consensus 596 ~~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 596 RHNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp CSTTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 34569999999999999999999999999997
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.99 E-value=8.4e-11 Score=104.41 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=59.3
Q ss_pred EeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhhhhc--eEEcccccccccccHHHHH
Q psy310 52 LRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFRKLS--CYIMQDNQLHANLTVEEAM 122 (240)
Q Consensus 52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~~~~--g~v~Q~~~~~~~ltv~e~l 122 (240)
.++|++++|+||||||||||+++|+|+ ..+..|+|.+.+.+... ...++.+ .+++|...+.+.+++.+++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~-l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANW-LKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH-HHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 368999999999999999999999997 45678999999887632 1123333 4899998888888999988
Q ss_pred HHHH
Q psy310 123 NVAT 126 (240)
Q Consensus 123 ~~~~ 126 (240)
..+.
T Consensus 205 ~~~~ 208 (328)
T 3e70_C 205 QHAK 208 (328)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 132
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.98 E-value=6.9e-11 Score=103.58 Aligned_cols=80 Identities=24% Similarity=0.194 Sum_probs=30.8
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL 112 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~ 112 (240)
.|+.+.++.+.++++++|.| +|||+||+|||||+++|.|....+.+| +.+.|.+.........+++++|.+..
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence 36778889999999999998 999999999999999999952446678 77766554222123457788886554
Q ss_pred cccccHH
Q psy310 113 HANLTVE 119 (240)
Q Consensus 113 ~~~ltv~ 119 (240)
...++++
T Consensus 75 ~~~ltv~ 81 (301)
T 2qnr_A 75 KLRLTVV 81 (301)
T ss_dssp CEEEEEE
T ss_pred ccCcchh
Confidence 4444443
No 133
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.98 E-value=8e-10 Score=109.63 Aligned_cols=34 Identities=44% Similarity=0.587 Sum_probs=31.7
Q ss_pred eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 76 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~ 76 (240)
..|++|||+|++||++||+|+||||||||+++|.
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4699999999999999999999999999999853
No 134
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.97 E-value=2.8e-10 Score=108.14 Aligned_cols=44 Identities=25% Similarity=0.514 Sum_probs=39.6
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW 227 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~ 227 (240)
+.+|+++||+|++||++||+|+||||||||+++|+|+..| ++++
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 401 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence 5799999999999999999999999999999999999654 4553
No 135
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.97 E-value=5.8e-11 Score=113.46 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=52.9
Q ss_pred EEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhhhceEEcccccccccccHHHHH
Q psy310 49 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRKLSCYIMQDNQLHANLTVEEAM 122 (240)
Q Consensus 49 sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~~~g~v~Q~~~~~~~ltv~e~l 122 (240)
+|+++. ++|||||||||||||++|+|++.|..+|.|.++|.++. ....+..++|++|++.+++.+++.+++
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEI 118 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTH
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHH
Confidence 366664 99999999999999999999844437999999997742 124567889999999999999999988
Q ss_pred HHHH
Q psy310 123 NVAT 126 (240)
Q Consensus 123 ~~~~ 126 (240)
....
T Consensus 119 ~~~~ 122 (608)
T 3szr_A 119 NKAQ 122 (608)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 136
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.96 E-value=3.3e-10 Score=107.60 Aligned_cols=44 Identities=34% Similarity=0.499 Sum_probs=39.6
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW 227 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~ 227 (240)
+.+|+++||+|++||++||+|+||||||||+++|+|+..| ++++
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 401 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 5799999999999999999999999999999999999654 4553
No 137
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.96 E-value=2.8e-10 Score=108.35 Aligned_cols=44 Identities=36% Similarity=0.502 Sum_probs=39.4
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW 227 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~ 227 (240)
+.+|+++||+|++||++||+|+||||||||+++|+|+..| ++++
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 402 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 402 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEE
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 3699999999999999999999999999999999999654 4553
No 138
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.94 E-value=3.9e-11 Score=103.20 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=49.0
Q ss_pred eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC-ccEEEECCccCCchhhhhhceEEcc
Q psy310 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-EGSITINGHERNLSQFRKLSCYIMQ 108 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~-~G~V~v~g~~~~~~~~~~~~g~v~Q 108 (240)
++|++++ +++|++++|+||||||||||+++|+|++ ++. +|+|.+.|.++... .+...++++|
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~-~~~~~G~I~~~g~~i~~~-~~~~~~~v~q 77 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI-NQTKSYHIITIEDPIEYV-FKHKKSIVNQ 77 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH-HHHCCCEEEEEESSCCSC-CCCSSSEEEE
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC-CCCCCCEEEEcCCcceee-cCCcceeeeH
Confidence 5889999 8999999999999999999999999974 455 89999988765321 1233456666
No 139
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.93 E-value=2.9e-10 Score=96.19 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=25.3
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
.+++.+|+++||++.+|+++||+|+||||||||+++|+|+
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3466799999999999999999999999999999999995
No 140
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.93 E-value=2.9e-10 Score=107.88 Aligned_cols=40 Identities=38% Similarity=0.603 Sum_probs=37.6
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
+.+|+++||+|++||++||+||||||||||+++|+|+..|
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 4699999999999999999999999999999999999655
No 141
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.93 E-value=2.3e-10 Score=95.70 Aligned_cols=38 Identities=29% Similarity=0.272 Sum_probs=22.9
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHh-CCC
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT-GYK 79 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~-G~~ 79 (240)
.+..+++||++++|++++|+||||||||||+++|+ |++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35678999999999999999999999999999999 974
No 142
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.92 E-value=2.2e-09 Score=106.77 Aligned_cols=33 Identities=39% Similarity=0.563 Sum_probs=31.3
Q ss_pred eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHH
Q psy310 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L 75 (240)
.+|++|||+|++||++||+|+||||||||+++|
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 469999999999999999999999999999985
No 143
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.92 E-value=4e-10 Score=107.38 Aligned_cols=40 Identities=33% Similarity=0.707 Sum_probs=37.6
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
+.+|+++||+|++||++||+|+||||||||+++|+|+..|
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 4699999999999999999999999999999999999655
No 144
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.91 E-value=4.6e-10 Score=106.78 Aligned_cols=45 Identities=29% Similarity=0.489 Sum_probs=39.9
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW 227 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~ 227 (240)
++.+|+++||+|++||++||+|+||||||||+++|+|+..| +++.
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 401 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Confidence 35699999999999999999999999999999999999655 4553
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.88 E-value=4.9e-10 Score=98.03 Aligned_cols=60 Identities=22% Similarity=0.364 Sum_probs=38.9
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEE---CCccCCch-h-h-hhhceEEccccc
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI---NGHERNLS-Q-F-RKLSCYIMQDNQ 111 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v---~g~~~~~~-~-~-~~~~g~v~Q~~~ 111 (240)
++.+|++++|+||||||||||+++|+|+ ..|..|+|.+ .|.+.... . . .+.++||+|.|.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~-~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPG-LKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTT-CCCC-------------CCCSCCEEECTTSCEEESSCS
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccc-ccccccceecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence 4557999999999999999999999997 5678999998 77654211 1 1 135799999875
No 146
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.87 E-value=2.6e-10 Score=100.29 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=38.4
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccchh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQL 226 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~~ 226 (240)
+.+|++++|+|++|++++|+|+||||||||+++|+|+. .++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I 154 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSV 154 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEE
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceE
Confidence 56999999999999999999999999999999999985 4544
No 147
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.87 E-value=4.5e-10 Score=92.88 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=41.8
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCCCCC-C-----CccEEEECCccCCchhhhhhceEEccccccc
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTS-G-----TEGSITINGHERNLSQFRKLSCYIMQDNQLH 113 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~-----~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~ 113 (240)
-|++||+++|+||||||||||+++|+|...+ + ..+.+.+++.+... ...+++++|...+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~ 86 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLD 86 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCC
Confidence 6899999999999999999999999994332 2 33477777654211 23355566655443
No 148
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.86 E-value=3.3e-10 Score=99.69 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=42.3
Q ss_pred EEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEE---CCccCCc-hhhhh-hceEEcccccccc----cccHHH
Q psy310 50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI---NGHERNL-SQFRK-LSCYIMQDNQLHA----NLTVEE 120 (240)
Q Consensus 50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v---~g~~~~~-~~~~~-~~g~v~Q~~~~~~----~ltv~e 120 (240)
+++.+|++++|+||||||||||+++|+|. ..+..|.|.+ .|..... ....+ ..+|++|.|.+.. .+++ +
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~-~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE-LGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccc-ccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 45668999999999999999999999997 5567899988 6654321 11112 2799999987765 5777 6
Q ss_pred HH
Q psy310 121 AM 122 (240)
Q Consensus 121 ~l 122 (240)
++
T Consensus 246 ~l 247 (307)
T 1t9h_A 246 EL 247 (307)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 149
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.86 E-value=6.3e-10 Score=91.13 Aligned_cols=76 Identities=13% Similarity=0.014 Sum_probs=49.9
Q ss_pred eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch--hhhhhceEEcccccccccccHHHH
Q psy310 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS--QFRKLSCYIMQDNQLHANLTVEEA 121 (240)
Q Consensus 44 ~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~--~~~~~~g~v~Q~~~~~~~ltv~e~ 121 (240)
++-...+...+|++++|+|+||||||||+++|++.+ |.+.+++.+.... ..+...++++|++...+.+++.++
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAE 92 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 344444667899999999999999999999999963 7788888665321 122356899998776666666665
Q ss_pred HHH
Q psy310 122 MNV 124 (240)
Q Consensus 122 l~~ 124 (240)
+..
T Consensus 93 ~~~ 95 (200)
T 4eun_A 93 WMD 95 (200)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 150
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.85 E-value=1.4e-10 Score=106.21 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=61.6
Q ss_pred CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-------hhhhhceEE
Q psy310 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-------QFRKLSCYI 106 (240)
Q Consensus 34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-------~~~~~~g~v 106 (240)
++.+.++...+|+++ +. .+|++++|+|||||||||||++|+|++ .+.+|.|.+.+.++... +....+++.
T Consensus 148 ~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~ 224 (418)
T 1p9r_A 148 SLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTVEDPIEFDIDGIGQTQVNPRVDMT 224 (418)
T ss_dssp GSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEEESSCCSCCSSSEEEECBGGGTBC
T ss_pred HcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEEecccchhccCCcceEEEccccCcC
Confidence 344455555677777 53 899999999999999999999999974 45689999887665321 123344554
Q ss_pred c---------cccccc--cc----ccHHHHHHHH
Q psy310 107 M---------QDNQLH--AN----LTVEEAMNVA 125 (240)
Q Consensus 107 ~---------Q~~~~~--~~----ltv~e~l~~~ 125 (240)
| |+|.+. .. .++.+++.++
T Consensus 225 f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~ 258 (418)
T 1p9r_A 225 FARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS 258 (418)
T ss_dssp HHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHH
Confidence 4 877653 22 4666766654
No 151
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.84 E-value=4.5e-10 Score=94.04 Aligned_cols=60 Identities=18% Similarity=0.230 Sum_probs=43.1
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHh--CCCCCCCccEEEECCccCC--chhhhhhceEEccccc
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILT--GYKTSGTEGSITINGHERN--LSQFRKLSCYIMQDNQ 111 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~--G~~~~~~~G~V~v~g~~~~--~~~~~~~~g~v~Q~~~ 111 (240)
.|++|++++|+||||||||||+++|+ |+ ..+..|.+.+.+.... .....+.+++++|+..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 89 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEERARDLRREMASFGWDFEKYE 89 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHh
Confidence 68999999999999999999999999 54 1344566777665432 1122345678877653
No 152
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.84 E-value=2e-10 Score=94.14 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=42.2
Q ss_pred CCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEcccc
Q psy310 55 GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDN 110 (240)
Q Consensus 55 Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~ 110 (240)
|++++|+||||||||||+++|+|++ . .+| |.++|.... ....++.++|++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~-~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL-K-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH-H-HTT-CCCEEEECCEEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc-c-cCC-EEEcCEecchhHhhhceEEEEEEec
Confidence 7899999999999999999999974 4 678 888776542 233466789999874
No 153
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.81 E-value=3.5e-10 Score=94.10 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=32.2
Q ss_pred ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
+.+.+|+++ .+||+++|+|+||||||||+++|+|+ .|
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC
Confidence 345677775 89999999999999999999999999 55
No 154
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.81 E-value=1.3e-09 Score=89.78 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=25.2
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
..++++ .+|.+||+++|+|+||||||||+++|+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 346677 689999999999999999999999999985
No 155
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.80 E-value=2e-09 Score=88.39 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=39.2
Q ss_pred EeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccccc--ccccHHHHHH
Q psy310 52 LRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLH--ANLTVEEAMN 123 (240)
Q Consensus 52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~--~~ltv~e~l~ 123 (240)
.++|+++||+||||||||||+++|+|++. + .++|++|++.++ ..+++.++..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-~-------------------~i~~v~~d~~~~~~~~~~~~~~~~ 56 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG-E-------------------RVALLPMDHYYKDLGHLPLEERLR 56 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG-G-------------------GEEEEEGGGCBCCCTTSCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC-C-------------------CeEEEecCccccCcccccHHHhcC
Confidence 57899999999999999999999999632 2 367888887665 4456666543
No 156
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.80 E-value=1e-10 Score=98.67 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=40.6
Q ss_pred EEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----------hhhhhhceEEccc
Q psy310 49 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----------SQFRKLSCYIMQD 109 (240)
Q Consensus 49 sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----------~~~~~~~g~v~Q~ 109 (240)
+|++.+ ++++|+|||||||||||++|+|+ ..|.+|.|.++|.+... ...+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTA-LIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHH-HSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcc-cccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 677777 89999999999999999999997 55789999998876511 1123567888874
No 157
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.78 E-value=1.9e-10 Score=99.74 Aligned_cols=54 Identities=22% Similarity=0.197 Sum_probs=43.7
Q ss_pred CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc-EEEECCccCC
Q psy310 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG-SITINGHERN 95 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G-~V~v~g~~~~ 95 (240)
+.++|+++++.|++|++++|+||||||||||+++|+|. ..+.+| .|.+.+.+..
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~-~~~~~G~~v~~~~~e~~ 75 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ-WGTAMGKKVGLAMLEES 75 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH-HHHTSCCCEEEEESSSC
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH-HHHHcCCeEEEEeCcCC
Confidence 34579999999999999999999999999999999996 334556 6765544443
No 158
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.75 E-value=1.5e-09 Score=101.69 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=45.2
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~ 93 (240)
..+++++++.|++|+.++|+|||||||||||++|+|+ .++.+|.|.+.+..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~-i~~~~giitied~~ 297 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF-IPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG-SCTTCCEEEEESSC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh-CCCCCCEEEEcCcc
Confidence 3467889999999999999999999999999999998 46789999998754
No 159
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.75 E-value=1.7e-09 Score=97.40 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=47.5
Q ss_pred eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC-ccEEEECCccCCchhhhhhceEEcc
Q psy310 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-EGSITINGHERNLSQFRKLSCYIMQ 108 (240)
Q Consensus 44 ~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~-~G~V~v~g~~~~~~~~~~~~g~v~Q 108 (240)
+|++++ +.+|++++|+||||||||||+++|+|++. +. +|.|.+.+.+... ..+..+++++|
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~~e~-~~~~~~~~v~Q 188 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIEY-VFKHKKSIVNQ 188 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-HHSCCEEEEEESSCCS-CCCCSSSEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-cCCCcEEEEecccHhh-hhccCceEEEe
Confidence 455554 78999999999999999999999999744 44 7999776655432 24556788998
No 160
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.75 E-value=2.5e-09 Score=89.38 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=22.9
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHh-CCc
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT-GYK 221 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~-G~~ 221 (240)
...+++||+|.+|++++|+|+||||||||+++|+ |+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999 874
No 161
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.71 E-value=1.9e-09 Score=88.82 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=34.8
Q ss_pred EeCCCEEEEECCCCchHHHHHHHHhCCCCC--CCccEEEECCccC
Q psy310 52 LRSGELTAIMGPSGAGKSTLLNILTGYKTS--GTEGSITINGHER 94 (240)
Q Consensus 52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--~~~G~V~v~g~~~ 94 (240)
.++|++++|+||||||||||+++|+|++.+ +..|.|.++|...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 478999999999999999999999997442 2467777766544
No 162
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.70 E-value=1.9e-09 Score=98.49 Aligned_cols=41 Identities=34% Similarity=0.569 Sum_probs=37.3
Q ss_pred ceeeccceeEEeCCc--------------------EEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310 184 KTILKSVSGRLRSGE--------------------LTAIMGPSGAGKSTLLNILTGYKILR 224 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge--------------------~valvG~NGsGKSTLlk~l~G~~~~~ 224 (240)
+.++++++|+|++|| ++||+|+||||||||+++|+|+..+.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~ 96 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE 96 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc
Confidence 468999999999999 99999999999999999999985543
No 163
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.69 E-value=5e-09 Score=97.35 Aligned_cols=44 Identities=23% Similarity=0.129 Sum_probs=38.8
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
..+|+++||+|++ |+++|+|+||||||||+++|+|+..+ +++++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 62 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF 62 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 4579999999999 99999999999999999999998544 46655
No 164
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.69 E-value=3.7e-09 Score=85.38 Aligned_cols=63 Identities=24% Similarity=0.176 Sum_probs=44.0
Q ss_pred CCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310 55 GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 124 (240)
Q Consensus 55 Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~ 124 (240)
|++++|+||||||||||+++|++ +.+|.+.+++.+... ....++++|........++.+++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~----~~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA----QLDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITD 64 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH----HSSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc----ccCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHH
Confidence 67999999999999999999987 346888888754311 1234667765544444566665544
No 165
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.69 E-value=3.4e-09 Score=96.99 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=34.9
Q ss_pred cccceeeccceeEEeCCcE--EEEEcCCCCCHHHHHHHHhCCcc
Q psy310 181 IHEKTILKSVSGRLRSGEL--TAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~--valvG~NGsGKSTLlk~l~G~~~ 222 (240)
+++.. ++++||+|++|++ +||+|+||||||||+++|+|+..
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 44455 9999999999999 99999999999999999999853
No 166
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.69 E-value=1.1e-09 Score=92.61 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=50.1
Q ss_pred CCCEEEEECCCCchHHHHHHHHh---CCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310 54 SGELTAIMGPSGAGKSTLLNILT---GYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 124 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~---G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~ 124 (240)
++++++|+||||||||||+++|+ |+ ..++.|+|.+.+.+.. ......+.+++|+..+.+..++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~-~~~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL-QHLSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC-CCEEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC-eEecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47999999999999999999999 97 5567788876653321 1233445566777666677777777664
No 167
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.69 E-value=4.9e-09 Score=85.36 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=27.9
Q ss_pred EEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc
Q psy310 50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG 85 (240)
Q Consensus 50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G 85 (240)
++|.+|++++|+||||||||||+++|++++ .+..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~-~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP-STSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT-TCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh-CCCeE
Confidence 368899999999999999999999999974 23444
No 168
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.68 E-value=3.9e-09 Score=94.28 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=37.4
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~ 224 (240)
+..+++++ |+|.+|++++|+|+||||||||+++|+|+..+.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 56799999 999999999999999999999999999985543
No 169
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.67 E-value=3.1e-09 Score=97.17 Aligned_cols=81 Identities=20% Similarity=0.160 Sum_probs=48.3
Q ss_pred CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc--EEEECCccCCchhhhhhceEEccc
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG--SITINGHERNLSQFRKLSCYIMQD 109 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G--~V~v~g~~~~~~~~~~~~g~v~Q~ 109 (240)
-.|+.+.++.+.++++++|.| +|||+||||||||+++|+|... +..| .+.+.... ......+++++|+
T Consensus 14 ~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~-~~~~~~~~~~~~~~---t~~~~~i~~v~q~ 83 (418)
T 2qag_C 14 FANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL-YSPEYPGPSHRIKK---TVQVEQSKVLIKE 83 (418)
T ss_dssp -CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC-CCCCCCSCC--------CCEEEEEECC---
T ss_pred EEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC-CCCCCCCcccCCcc---ceeeeeEEEEEec
Confidence 356778888899999999998 9999999999999999999733 2223 12111111 0112456778887
Q ss_pred ccccccccHHHHH
Q psy310 110 NQLHANLTVEEAM 122 (240)
Q Consensus 110 ~~~~~~ltv~e~l 122 (240)
+.+...+++.+++
T Consensus 84 ~~~~~~Ltv~Dt~ 96 (418)
T 2qag_C 84 GGVQLLLTIVDTP 96 (418)
T ss_dssp ---CEEEEEEECC
T ss_pred CCcccceeeeech
Confidence 6655555554443
No 170
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.65 E-value=2.8e-09 Score=87.46 Aligned_cols=27 Identities=44% Similarity=0.533 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGYK 79 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~ 79 (240)
++|++++|+||||||||||+++|.|++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999999999964
No 171
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.64 E-value=3.1e-09 Score=90.43 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=45.8
Q ss_pred eCCCEEEEECCCCchHHHHHHHHh---CCCCCCCccEEE--------ECCccCC----chhhhhhceEEcccc
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILT---GYKTSGTEGSIT--------INGHERN----LSQFRKLSCYIMQDN 110 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~---G~~~~~~~G~V~--------v~g~~~~----~~~~~~~~g~v~Q~~ 110 (240)
.+|++++|+|||||||||++++|+ |+ ..++.|.+. ..|.+.. ...++..+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~-~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNW-RLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTC-EEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCC-CcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 96 556789887 6776542 234567788888754
No 172
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.64 E-value=6.7e-09 Score=83.26 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=30.5
Q ss_pred eeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310 46 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 79 (240)
Q Consensus 46 ~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~ 79 (240)
++++|++.+| +++|+||||||||||+++|.+++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999 99999999999999999999863
No 173
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.63 E-value=3.1e-09 Score=86.16 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=32.1
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-ch--hhhhhceEEcccc
Q psy310 57 LTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LS--QFRKLSCYIMQDN 110 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~--~~~~~~g~v~Q~~ 110 (240)
+++|+||||||||||+++|+|++. |.+.|.+.. .. ..++.++|++|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecC
Confidence 689999999999999999999742 223332211 11 2356789999875
No 174
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.62 E-value=5.6e-09 Score=96.63 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=32.3
Q ss_pred cceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 189 ~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
+++|+|++||+++|+|+||||||||+|+|+|+..
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 7999999999999999999999999999999944
No 175
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.61 E-value=7e-09 Score=89.05 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=36.1
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc---chhhh
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL---RQLWL 228 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~---~~~~~ 228 (240)
.+|++++ +++|++++|+|+||||||||+++|+|+..+ ++++.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~ 59 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 59 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE
Confidence 4788888 999999999999999999999999998543 45544
No 176
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.60 E-value=5.2e-09 Score=93.84 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=35.2
Q ss_pred eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
++++++|.|++|+.++|+|+||||||||+++|+|+..+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 55999999999999999999999999999999999543
No 177
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.59 E-value=1.9e-09 Score=92.18 Aligned_cols=48 Identities=23% Similarity=0.341 Sum_probs=35.8
Q ss_pred cCCCc-eecC-CCceeeeeeEEEEeC---CCEEEEECCCCchHHHHHHHHhCC
Q psy310 31 TNTNN-NCEP-NEKTILKSVSGRLRS---GELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 31 ~~~~~-~~~~-~~~~~L~~vsl~I~~---Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.-+|+ .+.+ ++.++|+++||+|.+ |++++|+|++||||||++++|++.
T Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 19 ETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred EEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34566 7777 778899999999999 999999999999999999999984
No 178
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.59 E-value=1.5e-08 Score=88.84 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=33.9
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
..+..++|++++|++++|+|+||||||||++.|+|+..+
T Consensus 88 ~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 88 NSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp -CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 334678999999999999999999999999999998433
No 179
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.58 E-value=9e-09 Score=94.69 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=36.9
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
+..+|+++ |+|.+|++++|+|+||||||||+++|+|+..+
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 46799999 99999999999999999999999999998544
No 180
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.58 E-value=4.4e-09 Score=93.25 Aligned_cols=38 Identities=16% Similarity=0.366 Sum_probs=35.7
Q ss_pred eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
++++++|.|++|+.++|+|+||||||||+++|+|+..+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 78999999999999999999999999999999998544
No 181
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.58 E-value=7.2e-09 Score=83.59 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=39.8
Q ss_pred CEEEEECCCCchHHHHHHHHhCCCCCCC---ccEEEECCccC-C-----chhhh-hhce----EEccccccc
Q psy310 56 ELTAIMGPSGAGKSTLLNILTGYKTSGT---EGSITINGHER-N-----LSQFR-KLSC----YIMQDNQLH 113 (240)
Q Consensus 56 e~vgLvG~NGSGKSTLLr~L~G~~~~~~---~G~V~v~g~~~-~-----~~~~~-~~~g----~v~Q~~~~~ 113 (240)
++++|+|+||||||||+++|+|++. +. .|.|.++|.+. . ...++ +.++ ++.|++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence 5899999999999999999999754 44 79999998763 2 12344 3566 788877654
No 182
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.57 E-value=5.8e-09 Score=84.45 Aligned_cols=25 Identities=48% Similarity=0.573 Sum_probs=23.3
Q ss_pred CCEEEEECCCCchHHHHHHHHhCCC
Q psy310 55 GELTAIMGPSGAGKSTLLNILTGYK 79 (240)
Q Consensus 55 Ge~vgLvG~NGSGKSTLLr~L~G~~ 79 (240)
|++++|+||||||||||+++|+|++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 6789999999999999999999974
No 183
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=2.5e-08 Score=81.41 Aligned_cols=38 Identities=18% Similarity=0.044 Sum_probs=24.1
Q ss_pred CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
...+++++||++.+|++++|+|++||||||+++.|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999999999999999975
No 184
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.55 E-value=4e-09 Score=85.93 Aligned_cols=53 Identities=30% Similarity=0.291 Sum_probs=34.8
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC----CCCccEEE
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT----SGTEGSIT 88 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~----~~~~G~V~ 88 (240)
+|+.+.++ .+++++ |.+.+|++++|+|+||||||||++.|+|... .+..|.+.
T Consensus 7 ~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~ 63 (210)
T 1pui_A 7 QQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ 63 (210)
T ss_dssp ----CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------C
T ss_pred hhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce
Confidence 45556665 356777 8899999999999999999999999999631 45556554
No 185
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.54 E-value=1.6e-09 Score=88.64 Aligned_cols=59 Identities=22% Similarity=0.225 Sum_probs=44.1
Q ss_pred CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEE--EECCccC
Q psy310 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI--TINGHER 94 (240)
Q Consensus 34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V--~v~g~~~ 94 (240)
|+...++...+.+.+++..++|++++|+|+||||||||+++|++.+. ..|.+ .+++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 4 NIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNV 64 (200)
T ss_dssp ------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHH
T ss_pred CCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchh
Confidence 45566677777788888889999999999999999999999999632 45776 7777543
No 186
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.53 E-value=5.8e-09 Score=93.36 Aligned_cols=44 Identities=30% Similarity=0.380 Sum_probs=38.7
Q ss_pred eeeeEEEEeC--CCEEEEECCCCchHHHHHHHHhCCCCCCCc----cEEEE
Q psy310 45 LKSVSGRLRS--GELTAIMGPSGAGKSTLLNILTGYKTSGTE----GSITI 89 (240)
Q Consensus 45 L~~vsl~I~~--Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~----G~V~v 89 (240)
.+.|+++|.+ |++++|+||||||||||+++|+|++ .+.+ |++.+
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~-~~~~~~e~G~i~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF-NTTSAWEYGREFV 207 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT-TCEEECCTTHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh-CCCcchhhHHHHH
Confidence 4569999999 9999999999999999999999974 4667 77765
No 187
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.53 E-value=1e-08 Score=91.78 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=35.0
Q ss_pred eeccceeEEeC--CcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 186 ILKSVSGRLRS--GELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 186 il~~vsl~I~~--Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
++..|+++|.+ |++++|+|+||||||||+++|+|+..+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46789999999 999999999999999999999998555
No 188
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.53 E-value=2.8e-08 Score=98.78 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=35.1
Q ss_pred CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
++..++++++|++++|++++|+||||||||||||+|++
T Consensus 658 ~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 658 QDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 35678899999999999999999999999999999976
No 189
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.53 E-value=1.4e-08 Score=95.18 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=39.8
Q ss_pred ccceeecccee-EEeCCcEEEEEcCCCCCHHHHHHH--HhCCccc--chhhh
Q psy310 182 HEKTILKSVSG-RLRSGELTAIMGPSGAGKSTLLNI--LTGYKIL--RQLWL 228 (240)
Q Consensus 182 ~~~~il~~vsl-~I~~Ge~valvG~NGsGKSTLlk~--l~G~~~~--~~~~~ 228 (240)
.+..+|++++| .|.+||+++|+|+||||||||+++ ++|+..+ +.+++
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v 74 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 74 (525)
T ss_dssp CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 35679999999 999999999999999999999999 6788543 35544
No 190
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.52 E-value=2.8e-08 Score=89.04 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=48.9
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 124 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~ 124 (240)
.+.+|++++|+|||||||||||++|+|++.+...|.|...+.+... ......+++.|........+..+.++.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLGFSEALRS 191 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-hhhccccceeeeeeccccCCHHHHHHH
Confidence 5678999999999999999999999997443335676654443322 123344667776554445666665543
No 191
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.52 E-value=1e-08 Score=91.05 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=36.3
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
.+.++++++|++.+|++++|+|+||||||||+++|+|+..
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3568999999999999999999999999999999998643
No 192
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.51 E-value=3.1e-09 Score=91.79 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=49.4
Q ss_pred CCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEccc
Q psy310 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQD 109 (240)
Q Consensus 39 ~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q~ 109 (240)
++...+|+++++.+++| ++|+||||||||||+++|+|.. .+ +.+.+.|.++.. ....+.++++||.
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~-~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~ 98 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANES-GL--NFISVKGPELLNMYVGESERAVRQVFQR 98 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHT-TC--EEEEEETTTTCSSTTHHHHHHHHHHHHH
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHc-CC--CEEEEEcHHHHhhhhhHHHHHHHHHHHH
Confidence 34556789999999999 9999999999999999999973 32 788998876521 1223345555554
No 193
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.50 E-value=5.2e-08 Score=95.67 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=35.3
Q ss_pred CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++.++++++|+ ++|++++|+||||||||||||+|+|+
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 456789999999 99999999999999999999999995
No 194
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.49 E-value=3.5e-08 Score=79.46 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=29.1
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEE
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI 89 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v 89 (240)
.+|++++|+||||||||||+++|++.+++...|.|.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 3799999999999999999999999743224455543
No 195
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.48 E-value=1.8e-07 Score=92.00 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=27.7
Q ss_pred EEEeCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310 50 GRLRSGELTAIMGPSGAGKSTLLNILTGYK 79 (240)
Q Consensus 50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~ 79 (240)
|.+.+++.++|+||+|||||||+++|++.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 468999999999999999999999999963
No 196
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.48 E-value=7.5e-09 Score=85.29 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=42.0
Q ss_pred ceeeeeeEE-EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC
Q psy310 42 KTILKSVSG-RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95 (240)
Q Consensus 42 ~~~L~~vsl-~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~ 95 (240)
.+.|+++.+ .|++|++++|+||||||||||++.|++... +..|.|.+.+.+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-RDGDPCIYVTTEES 62 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-HHTCCEEEEESSSC
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HCCCeEEEEEcccC
Confidence 456778876 899999999999999999999999998533 34567777665443
No 197
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.46 E-value=1.7e-08 Score=91.26 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=35.5
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
+....+|++++|++.+| +++|+|+||||||||+++|.++
T Consensus 45 i~nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 45 IRNLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp EEEETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred hccccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999 9999999999999999999776
No 198
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.45 E-value=7.4e-08 Score=95.93 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=33.1
Q ss_pred CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHH
Q psy310 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75 (240)
Q Consensus 40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L 75 (240)
+...++++++|++.+|++++|+||||||||||||+|
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 445688899999999999999999999999999999
No 199
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.45 E-value=4.1e-08 Score=84.95 Aligned_cols=53 Identities=25% Similarity=0.169 Sum_probs=42.1
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--c-hh-hh-ccCChhh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--R-QL-WL-LEYSHKD 235 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~-~~-~~-~~~~~~~ 235 (240)
+..+|+++++.|++|++++|+|+||||||||++.|+|+..+ + .+ |+ .+.+++.
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~ 78 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEE 78 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHH
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHH
Confidence 34589999999999999999999999999999999998443 2 34 33 5555543
No 200
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.44 E-value=2.1e-08 Score=88.27 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=30.1
Q ss_pred cceeE-EeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 189 SVSGR-LRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 189 ~vsl~-I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
+++.. +.+|+++||+|+||||||||+++|+|+..+
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45543 899999999999999999999999998543
No 201
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.44 E-value=7.6e-08 Score=80.31 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHh--CC
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILT--GY 220 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~--G~ 220 (240)
.|++|++++|+|+||||||||+++|+ |+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999999999999 55
No 202
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.44 E-value=8.5e-08 Score=79.00 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=26.7
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
.|++||+++|+|+||||||||+++|+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999999999994
No 203
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.43 E-value=4.7e-08 Score=87.67 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=32.3
Q ss_pred ccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 188 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 188 ~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
..++|++++|++++|+|+||||||||++.|+|+..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 56899999999999999999999999999999843
No 204
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.42 E-value=7.1e-08 Score=96.97 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=35.7
Q ss_pred ceecC-CCceeeeeeEEEEeC-------CCEEEEECCCCchHHHHHHHHhCC
Q psy310 35 NNCEP-NEKTILKSVSGRLRS-------GELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 35 ~~~~~-~~~~~L~~vsl~I~~-------Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++.+ ++..++++++|++.+ |++++|+||||||||||||+| |+
T Consensus 761 l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 761 ITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp ------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred EEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 55555 667899999999987 999999999999999999999 86
No 205
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.42 E-value=5e-08 Score=90.73 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=36.0
Q ss_pred eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL 228 (240)
Q Consensus 187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~ 228 (240)
-++++|++.+|++++|+|+||||||||++.|+|+..+ +++++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 4689999999999999999999999999999998433 35544
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.41 E-value=1.8e-09 Score=95.50 Aligned_cols=90 Identities=21% Similarity=0.269 Sum_probs=61.4
Q ss_pred CCCceecCCCceeeeeeEEEEeCC-------CEEEEECCCCchHHHHHHHHhCCCC---CCCccEEEECCccCCc--hh-
Q psy310 32 NTNNNCEPNEKTILKSVSGRLRSG-------ELTAIMGPSGAGKSTLLNILTGYKT---SGTEGSITINGHERNL--SQ- 98 (240)
Q Consensus 32 ~~~~~~~~~~~~~L~~vsl~I~~G-------e~vgLvG~NGSGKSTLLr~L~G~~~---~~~~G~V~v~g~~~~~--~~- 98 (240)
-++++.-++...+++++++.|.+| +.++|+||||+|||||+++|++.+. .+.+|.+...+.+... ..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~ 100 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSL 100 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHC
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHc
Confidence 346667778888999999999887 8999999999999999999999632 2234544443332210 01
Q ss_pred hhhhceEEcccccccccccHHHHHH
Q psy310 99 FRKLSCYIMQDNQLHANLTVEEAMN 123 (240)
Q Consensus 99 ~~~~~g~v~Q~~~~~~~ltv~e~l~ 123 (240)
.+..+.++.|.+.+.. ++.+.+.
T Consensus 101 ~~~~v~~iDE~~~l~~--~~~e~L~ 123 (334)
T 1in4_A 101 ERGDVLFIDEIHRLNK--AVEELLY 123 (334)
T ss_dssp CTTCEEEEETGGGCCH--HHHHHHH
T ss_pred cCCCEEEEcchhhcCH--HHHHHHH
Confidence 1345778888766543 5666553
No 207
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.41 E-value=5.9e-08 Score=77.16 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=38.2
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-hhh-hhceEEccccc
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-QFR-KLSCYIMQDNQ 111 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-~~~-~~~g~v~Q~~~ 111 (240)
.+|++++|+|+|||||||++++|++.+ |.+.+++.+.... ... ...++.+|+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~ 61 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDD 61 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHHHHHHHTTCCCCHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccchHHHHHhhcCcCCCccc
Confidence 468999999999999999999999852 6677877654311 111 23566666543
No 208
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.41 E-value=1.1e-07 Score=93.08 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=46.8
Q ss_pred CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHH
Q psy310 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVE 119 (240)
Q Consensus 40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~ 119 (240)
++..++++++|+ |++++|+||||||||||||+|+|+...+..|.+. . ..+..+++++| ++..+++.
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p--a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P--AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S--SSEEEECCCSE---EEEECCC-
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e--hhccceeeHHH---hhccCCHH
Confidence 446788999999 9999999999999999999999963224456432 1 11234666665 45566666
Q ss_pred HHHH
Q psy310 120 EAMN 123 (240)
Q Consensus 120 e~l~ 123 (240)
+++.
T Consensus 630 d~l~ 633 (765)
T 1ewq_A 630 DDLA 633 (765)
T ss_dssp ----
T ss_pred HHHH
Confidence 6554
No 209
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.40 E-value=3.1e-08 Score=86.71 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=25.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 195 RSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 195 ~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
.+|+++||+|+||||||||+++|+|+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 889999999999999999999999973
No 210
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.40 E-value=7.9e-08 Score=79.04 Aligned_cols=29 Identities=38% Similarity=0.438 Sum_probs=26.8
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 194 LRSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 194 I~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
.++|++++|+|+||||||||+++|+|+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999999999854
No 211
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.40 E-value=1.1e-07 Score=83.72 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=28.2
Q ss_pred eeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|++.+| +++|+||||||||||+++|..+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 578888999 9999999999999999999853
No 212
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.39 E-value=1.2e-07 Score=75.86 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=32.3
Q ss_pred ceee--ccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 184 KTIL--KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 184 ~~il--~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
...+ +++++.+.+| +++|+|+||||||||+++|+++
T Consensus 12 f~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 12 FKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp BGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred eEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 3466 7889999999 9999999999999999999885
No 213
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.38 E-value=6.7e-08 Score=85.35 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=55.8
Q ss_pred eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-------hh-----hhhceEE-ccccc
Q psy310 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-------QF-----RKLSCYI-MQDNQ 111 (240)
Q Consensus 45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-------~~-----~~~~g~v-~Q~~~ 111 (240)
+++++|++.+|++++|+|+||+||||++..|++.+ .+..|+|.+.+.|.... .+ +..+.++ +|...
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l-~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY-AELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH-HHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 36789999999999999999999999999999964 34678888877665321 11 3346777 66544
Q ss_pred ccccccHHHHHHH
Q psy310 112 LHANLTVEEAMNV 124 (240)
Q Consensus 112 ~~~~ltv~e~l~~ 124 (240)
..+..++.+++..
T Consensus 174 ~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 174 ADPASVVFDAIKK 186 (320)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444445555543
No 214
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=1.6e-07 Score=76.57 Aligned_cols=37 Identities=19% Similarity=0.064 Sum_probs=23.1
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G 219 (240)
....++++||++.+|.+++|+|++||||||+.+.|++
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3458999999999999999999999999999999985
No 215
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.36 E-value=1.1e-07 Score=79.56 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=34.4
Q ss_pred eEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310 48 VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93 (240)
Q Consensus 48 vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~ 93 (240)
-+...++|++++|+|+||||||||+++|+++ .|.|.+.+.+
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~ 53 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEP 53 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCT
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecC
Confidence 3345579999999999999999999999995 5778887765
No 216
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.36 E-value=4.2e-08 Score=87.56 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=49.5
Q ss_pred eeeeee-EEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CCCc----cE-EEECCccCCchhhhhhceEEccccccc
Q psy310 43 TILKSV-SGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SGTE----GS-ITINGHERNLSQFRKLSCYIMQDNQLH 113 (240)
Q Consensus 43 ~~L~~v-sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~~~----G~-V~v~g~~~~~~~~~~~~g~v~Q~~~~~ 113 (240)
+.|+.+ .+.|++|++++|+||||||||||++.|++... ++.+ |. |++++.+.. .+..+++++|...+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCC
Confidence 345555 68999999999999999999999999999742 3344 67 788876541 134466677765443
No 217
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.34 E-value=1.4e-07 Score=92.72 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=37.6
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccchh
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQL 226 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~~ 226 (240)
++.++++++|+ .+|++++|+||||||||||+|+|+|+....|+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~ 636 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYI 636 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTT
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhc
Confidence 45689999999 99999999999999999999999997554443
No 218
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.33 E-value=3.8e-07 Score=75.73 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=35.3
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhC--CCCC----CCccEEEECCcc
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTG--YKTS----GTEGSITINGHE 93 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G--~~~~----~~~G~V~v~g~~ 93 (240)
-|++|++++|+||||||||||++.|++ ...+ ...|.+.+.+.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 488999999999999999999999999 3222 146788888765
No 219
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.33 E-value=7.9e-08 Score=95.55 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=37.7
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccchh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQL 226 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~~ 226 (240)
+.|+++++|++.+|++++|+||||||||||+|+|+++....|+
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~ 702 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQI 702 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhc
Confidence 5688999999999999999999999999999999876554443
No 220
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.32 E-value=2e-08 Score=88.37 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=32.8
Q ss_pred CEEEEECCCCchHHHHHHHHhCCCC-------CCCccEEEECCccC
Q psy310 56 ELTAIMGPSGAGKSTLLNILTGYKT-------SGTEGSITINGHER 94 (240)
Q Consensus 56 e~vgLvG~NGSGKSTLLr~L~G~~~-------~~~~G~V~v~g~~~ 94 (240)
++++|+|+|||||||||++|.|... .++.|+|.++|.++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 5899999999999999999999731 46789998887654
No 221
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.32 E-value=4e-07 Score=83.15 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=36.7
Q ss_pred ecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 37 ~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
++.+..---++++|+++.|++++|||+|||||||||++|++.
T Consensus 139 ~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 139 AEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred ccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 444544456899999999999999999999999999999996
No 222
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.29 E-value=6.8e-08 Score=82.46 Aligned_cols=38 Identities=29% Similarity=0.493 Sum_probs=34.7
Q ss_pred ccceeeccceeEEeC---CcEEEEEcCCCCCHHHHHHHHhC
Q psy310 182 HEKTILKSVSGRLRS---GELTAIMGPSGAGKSTLLNILTG 219 (240)
Q Consensus 182 ~~~~il~~vsl~I~~---Ge~valvG~NGsGKSTLlk~l~G 219 (240)
++..+|++++|+|.+ |++++|+|++||||||++++|++
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999 99999999999999999999987
No 223
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.27 E-value=3.8e-07 Score=75.03 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=25.7
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCCCC
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGYKT 80 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~ 80 (240)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999743
No 224
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.27 E-value=1.5e-07 Score=92.64 Aligned_cols=35 Identities=37% Similarity=0.523 Sum_probs=32.3
Q ss_pred eeccceeEEeCCcEEEEEcCCCCCHHHHHHH-HhCC
Q psy310 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNI-LTGY 220 (240)
Q Consensus 186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~-l~G~ 220 (240)
+|+++||+|++||++||+|+||||||||++. |+|+
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 5899999999999999999999999999996 6654
No 225
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.25 E-value=1.3e-07 Score=88.65 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=36.3
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
..++++++|.|++|+.++|+|+||||||||+++|+|+..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 4578899999999999999999999999999999998544
No 226
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.25 E-value=3.2e-07 Score=91.41 Aligned_cols=33 Identities=39% Similarity=0.553 Sum_probs=31.0
Q ss_pred eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218 (240)
Q Consensus 186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~ 218 (240)
+|+++||+|++||++||+|+||||||||+++|+
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 489999999999999999999999999999863
No 227
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.25 E-value=1.8e-07 Score=80.59 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=37.6
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccchh
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQL 226 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~~ 226 (240)
+..+.+|+++++.+.+| ++|+||||||||||+++|+|...+..+
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 34567999999999999 999999999999999999997554433
No 228
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.25 E-value=4.5e-07 Score=90.30 Aligned_cols=33 Identities=27% Similarity=0.234 Sum_probs=31.5
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHH
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l 217 (240)
.++++++|++.+|++++|+||||||||||+|+|
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 477899999999999999999999999999999
No 229
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.25 E-value=2.7e-07 Score=90.20 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=33.4
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
++.++++++|+ |++++|+||||||||||+|+|+|+..
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 35688999998 99999999999999999999999754
No 230
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.24 E-value=2e-07 Score=75.72 Aligned_cols=36 Identities=36% Similarity=0.348 Sum_probs=32.2
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
..++++ |.+.+|++++|+|+||||||||++.|+|..
T Consensus 15 ~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 15 APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356777 899999999999999999999999999986
No 231
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.23 E-value=2.9e-08 Score=85.17 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=49.9
Q ss_pred ecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcccc
Q psy310 37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQDN 110 (240)
Q Consensus 37 ~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~~ 110 (240)
..++...+++++++.+++| ++|+||||||||||+++|++... .|.|.+.+.+.. .......+.+++|..
T Consensus 57 ~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 128 (278)
T 1iy2_A 57 EFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETA 128 (278)
T ss_dssp HHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444556788999999999 99999999999999999999632 678888775431 111233455666654
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.22 E-value=3.4e-08 Score=83.40 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=49.7
Q ss_pred ecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcccc
Q psy310 37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQDN 110 (240)
Q Consensus 37 ~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~~ 110 (240)
..++...+++++++++++| ++|+||||+|||||+++|++... .|.+.+.+.+.. .......+++++|..
T Consensus 33 ~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 104 (254)
T 1ixz_A 33 EFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETA 104 (254)
T ss_dssp HHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444556789999999999 99999999999999999999632 678888775431 111223455666653
No 233
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.22 E-value=1.9e-07 Score=76.41 Aligned_cols=41 Identities=24% Similarity=0.171 Sum_probs=33.6
Q ss_pred EeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310 52 LRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93 (240)
Q Consensus 52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~ 93 (240)
..+|++++|+|+||||||||+++|++.+ .+..|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~-~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL-REQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH-HHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH-hhcCCeEEEeccC
Confidence 5689999999999999999999999963 3456777776544
No 234
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.22 E-value=4.7e-07 Score=74.37 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=32.6
Q ss_pred ceeecccee-EEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 184 KTILKSVSG-RLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 184 ~~il~~vsl-~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
...|+++.+ .|.+|+.++|+|+||||||||++.|++.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345777776 7999999999999999999999999975
No 235
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.22 E-value=2.4e-07 Score=72.73 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=32.7
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCCCCCCCcc--EEEECCccC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGYKTSGTEG--SITINGHER 94 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G--~V~v~g~~~ 94 (240)
+|+.++|+||+|||||||+++|++.+. + +| .+.+.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCCcEEEEcHHHh
Confidence 899999999999999999999999643 2 57 777777554
No 236
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.22 E-value=3.2e-07 Score=91.17 Aligned_cols=33 Identities=45% Similarity=0.608 Sum_probs=31.1
Q ss_pred eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218 (240)
Q Consensus 186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~ 218 (240)
.|+++||+|++||++||+|+||||||||+++|+
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 589999999999999999999999999999864
No 237
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.21 E-value=3.8e-07 Score=81.75 Aligned_cols=35 Identities=31% Similarity=0.362 Sum_probs=32.1
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
...+++++|++.+| +++|+|||||||||||++|.+
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 14 YRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp BTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 34578899999999 999999999999999999997
No 238
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.21 E-value=1.2e-07 Score=85.56 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=45.8
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~ 110 (240)
..+|+++++.+++|++++|+||+|||||||+++|+|. ..|.+....... ......+++++|..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~----~~g~~~~~~~~~--~~~~~~lg~~~q~~ 218 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL----CGGKALNVNLPL--DRLNFELGVAIDQF 218 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH----HCCEEECCSSCT--TTHHHHHGGGTTCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh----cCCcEEEEeccc--hhHHHHHHHhcchh
Confidence 3578999999999999999999999999999999985 256665521111 11222356666654
No 239
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.21 E-value=2.3e-07 Score=74.16 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=28.1
Q ss_pred EEEEeCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310 49 SGRLRSGELTAIMGPSGAGKSTLLNILTGYK 79 (240)
Q Consensus 49 sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~ 79 (240)
+|.+.+|+.++|+||||+|||||+++|++.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5677889999999999999999999999963
No 240
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.20 E-value=4.2e-08 Score=86.74 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=36.6
Q ss_pred CCceeeeeeEEEEeCCC------EEEEECCCCchHHHHHHHHhCCCCC-CCccEEEEC
Q psy310 40 NEKTILKSVSGRLRSGE------LTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITIN 90 (240)
Q Consensus 40 ~~~~~L~~vsl~I~~Ge------~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v~ 90 (240)
++...+++++..+.+++ ++||+||||||||||+++|.+++.. +..|.|.+-
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i 128 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence 34445566666666666 8999999999999999999997432 345555443
No 241
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.19 E-value=8.3e-07 Score=79.55 Aligned_cols=33 Identities=42% Similarity=0.696 Sum_probs=30.0
Q ss_pred eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 76 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~ 76 (240)
..++++++++.+| +++|+|||||||||||.+|+
T Consensus 12 ~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 12 LGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cCccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3467899999999 88999999999999999998
No 242
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.18 E-value=6.2e-07 Score=78.27 Aligned_cols=35 Identities=40% Similarity=0.531 Sum_probs=22.4
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
.++.+.++++++|+| +|+|+||+|||||++.|+|.
T Consensus 7 ~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 7 QVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp -----------CEEE------EEEEETTSSHHHHHHHHHC-
T ss_pred eECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCC
Confidence 355678999999988 99999999999999999997
No 243
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.18 E-value=7.7e-07 Score=72.51 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=23.8
Q ss_pred eeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 191 SGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 191 sl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
..+.++|++++|+|+||||||||+++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 355678999999999999999999999874
No 244
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.18 E-value=8.7e-07 Score=80.96 Aligned_cols=37 Identities=32% Similarity=0.454 Sum_probs=32.0
Q ss_pred ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
.++.+.++++++|+| +|+|+||||||||+++|+|+..
T Consensus 20 ~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 20 QVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred eECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 345678999999998 9999999999999999999865
No 245
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.16 E-value=2.5e-07 Score=88.18 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=55.1
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcc
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQ 108 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q 108 (240)
++.+.=+|...+++.+++.+.+|+.++|+||+|+|||||+++|++++.+...|.+.+.+.... .....+.++++
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~--~~~p~i~~~p~ 111 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED--ENMPRIKTVPA 111 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC--TTSCEEEEEET
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc--ccCCcEEEEec
Confidence 344445677789999999999999999999999999999999999855443478888765442 12333455543
No 246
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.16 E-value=5.8e-07 Score=90.38 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=34.6
Q ss_pred cceeeccceeEEeC-------CcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 183 EKTILKSVSGRLRS-------GELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 183 ~~~il~~vsl~I~~-------Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
++.++++++|.+.+ |++++|+||||||||||+|.| |+.
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 45689999999987 999999999999999999999 873
No 247
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.16 E-value=5.3e-07 Score=76.01 Aligned_cols=39 Identities=23% Similarity=0.557 Sum_probs=34.8
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
+....+++++++.+.+| ++|+|+||||||||+++|++..
T Consensus 35 ~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 35 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999 9999999999999999999863
No 248
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.15 E-value=3.8e-07 Score=82.28 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=34.9
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
..+++++++.|.+|+.++|+|+||||||||+++|+|.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4689999999999999999999999999999999985
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.14 E-value=8.8e-07 Score=72.93 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=26.0
Q ss_pred EEEeCCCEEEEECCCCchHHHHHHHHhCCCC
Q psy310 50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKT 80 (240)
Q Consensus 50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~ 80 (240)
+..-+|++++|+||||||||||++.|.+.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445899999999999999999999998643
No 250
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.14 E-value=1.3e-06 Score=70.47 Aligned_cols=38 Identities=32% Similarity=0.485 Sum_probs=30.4
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCC----C------CccEEEECCccC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGYKTS----G------TEGSITINGHER 94 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~~~~----~------~~G~V~v~g~~~ 94 (240)
+++|+|+||||||||++.|+|...+ + ..|.|.++|.+.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 6899999999999999999996322 1 368888888643
No 251
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.14 E-value=1.3e-06 Score=73.43 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHh---CCcccc
Q psy310 196 SGELTAIMGPSGAGKSTLLNILT---GYKILR 224 (240)
Q Consensus 196 ~Ge~valvG~NGsGKSTLlk~l~---G~~~~~ 224 (240)
++++++|+|+||||||||+++|+ |+..+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 47899999999999999999999 986554
No 252
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.13 E-value=7.4e-07 Score=79.85 Aligned_cols=37 Identities=30% Similarity=0.331 Sum_probs=33.7
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
+...+++++|++.+| +++|+|+||||||||+++|.++
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 13 NYRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp SBTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred CccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHh
Confidence 345678999999999 9999999999999999999985
No 253
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.13 E-value=4.1e-07 Score=81.84 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=31.8
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
.+|++++ +.+|+.++|+|+||||||||+++|+|+..+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 3666665 889999999999999999999999998543
No 254
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.13 E-value=6.5e-07 Score=76.66 Aligned_cols=39 Identities=23% Similarity=0.557 Sum_probs=34.9
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
+....+++++++.+.+| ++|+|+||||||||+++|++..
T Consensus 59 ~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 59 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 44567899999999999 9999999999999999999863
No 255
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.13 E-value=4.2e-07 Score=74.13 Aligned_cols=37 Identities=27% Similarity=0.209 Sum_probs=30.8
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
...+.+++..++|++++|+|++|||||||+++|++..
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445556667889999999999999999999999863
No 256
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.13 E-value=6.8e-07 Score=71.41 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=27.5
Q ss_pred eeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 191 SGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 191 sl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
+|.+.+|+.++|+|+||+|||||+++|++..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3566789999999999999999999999874
No 257
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.11 E-value=9.8e-07 Score=80.57 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=33.1
Q ss_pred eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
-++++|+|+.|++|+|+|+||||||||+++|+|.+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 47899999999999999999999999999999983
No 258
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.11 E-value=8.1e-07 Score=77.47 Aligned_cols=32 Identities=34% Similarity=0.489 Sum_probs=27.5
Q ss_pred eEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 192 GRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 192 l~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
|++.+|++++|+|+||||||||+++|+|+..+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccc
Confidence 34556899999999999999999999998544
No 259
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.10 E-value=9.3e-07 Score=77.42 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 196 SGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 196 ~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
+|++++|+|+||||||||++.|+|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6899999999999999999999998443
No 260
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.09 E-value=1.7e-06 Score=73.41 Aligned_cols=33 Identities=33% Similarity=0.651 Sum_probs=28.1
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHh---CCccc--chhh
Q psy310 195 RSGELTAIMGPSGAGKSTLLNILT---GYKIL--RQLW 227 (240)
Q Consensus 195 ~~Ge~valvG~NGsGKSTLlk~l~---G~~~~--~~~~ 227 (240)
.+|++++|+|++||||||++++|+ |+..+ +.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 679999999999999999999999 98443 4554
No 261
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.08 E-value=2e-06 Score=77.92 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=34.7
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCC-----------CCCCCccEEEECC
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGY-----------KTSGTEGSITING 91 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~-----------~~~~~~G~V~v~g 91 (240)
.+.+|++++|||+||||||||+++|+|. ...|..|.|.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 4578999999999999999999999993 1236789998876
No 262
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.08 E-value=6.4e-07 Score=84.55 Aligned_cols=42 Identities=38% Similarity=0.460 Sum_probs=34.8
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc-EEE-ECCcc
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG-SIT-INGHE 93 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G-~V~-v~g~~ 93 (240)
.+++|++++|+|+||||||||+++|++.+ .+.+| .+. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L-~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARL-MEMGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHH-HTTCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhh-cccCCceEEEECCcH
Confidence 47899999999999999999999999974 45565 674 77754
No 263
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.07 E-value=2.5e-06 Score=84.74 Aligned_cols=29 Identities=34% Similarity=0.570 Sum_probs=27.9
Q ss_pred eeccceeEEeCCcEEEEEcCCCCCHHHHH
Q psy310 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLL 214 (240)
Q Consensus 186 il~~vsl~I~~Ge~valvG~NGsGKSTLl 214 (240)
.|+++||+|++|++++|+|+||||||||+
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhH
Confidence 48999999999999999999999999997
No 264
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.07 E-value=1.3e-06 Score=68.91 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.|++++|+|++|||||||+++|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999996
No 265
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.06 E-value=4.3e-07 Score=79.17 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=39.9
Q ss_pred eeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC
Q psy310 46 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95 (240)
Q Consensus 46 ~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~ 95 (240)
++++|+ +|++++|+|+||+||||++..|++.+ .+..|+|.+.+.+..
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~-~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY-KGKGRRPLLVAADTQ 137 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH-HHTTCCEEEEECCSS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEecCCcc
Confidence 678888 99999999999999999999999974 345788988776653
No 266
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.05 E-value=5.6e-07 Score=82.22 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=34.3
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhhc
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWLL 229 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~~ 229 (240)
..+|+++ + .++|++++|+|+||||||||+++|+|+..+ +.++..
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 3466776 4 378999999999999999999999998443 456543
No 267
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.03 E-value=2.4e-06 Score=66.93 Aligned_cols=29 Identities=31% Similarity=0.645 Sum_probs=23.8
Q ss_pred eeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310 47 SVSGRLRSGELTAIMGPSGAGKSTLLNILT 76 (240)
Q Consensus 47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~ 76 (240)
+.++++.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345555554 89999999999999999987
No 268
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.03 E-value=1.4e-06 Score=77.16 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=26.9
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
...+|++++|+|+||||||||++.|+|+..
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999999743
No 269
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.03 E-value=8.9e-07 Score=79.24 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=27.6
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
.+.+|+.++|+|+||||||||+++|+|+..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 5678889999999999999999999998443
No 270
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.01 E-value=2.6e-06 Score=76.27 Aligned_cols=34 Identities=41% Similarity=0.643 Sum_probs=30.5
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~ 218 (240)
...++++++.+..| .++|+|+||||||||+.+|+
T Consensus 11 f~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 11 FLGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp ETTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccCccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34567889999999 89999999999999999998
No 271
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.00 E-value=1.9e-06 Score=71.93 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=27.8
Q ss_pred ceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 190 VSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 190 vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
-+...++|++++|+|+||||||||+++|+|+
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3445689999999999999999999999997
No 272
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.00 E-value=6.7e-07 Score=78.50 Aligned_cols=31 Identities=32% Similarity=0.279 Sum_probs=26.3
Q ss_pred eEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 192 GRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 192 l~I~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
+++.+|++++|+|+||+|||||+++|+|+..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc
Confidence 5567899999999999999999999999743
No 273
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.99 E-value=6.4e-07 Score=78.58 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=38.2
Q ss_pred eEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC
Q psy310 48 VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER 94 (240)
Q Consensus 48 vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~ 94 (240)
+++...+|++++|+|+|||||||++..|++.+ .+..|+|.+.+.|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l-~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF-VDEGKSVVLAAADT 142 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEECT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHH-HhcCCEEEEEcccc
Confidence 45667899999999999999999999999974 34567888877664
No 274
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.97 E-value=2.9e-06 Score=77.30 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=27.1
Q ss_pred EEEeCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310 50 GRLRSGELTAIMGPSGAGKSTLLNILTGYK 79 (240)
Q Consensus 50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~ 79 (240)
+++.+|++++|+|||||||||||++|.++.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 557789999999999999999999999863
No 275
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.97 E-value=5.2e-06 Score=75.36 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=33.2
Q ss_pred EEEeCCCEEEEECCCCchHHHHHHHH--hCCCCCCC-----ccEEEECCcc
Q psy310 50 GRLRSGELTAIMGPSGAGKSTLLNIL--TGYKTSGT-----EGSITINGHE 93 (240)
Q Consensus 50 l~I~~Ge~vgLvG~NGSGKSTLLr~L--~G~~~~~~-----~G~V~v~g~~ 93 (240)
--|++|++++|+||||||||||++.| .+. .++. .+.+++++.+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~-~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQ-IPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTT-SCGGGTCCSSEEEEEESSS
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhc-cCcccCCCCCcEEEEeCCC
Confidence 36899999999999999999999944 565 4332 3477787765
No 276
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.96 E-value=2.3e-06 Score=69.76 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=26.5
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGYK 79 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~ 79 (240)
.+.+|++++|+|++|||||||+++|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999999999963
No 277
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.96 E-value=3.2e-06 Score=68.98 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=34.3
Q ss_pred eeeeeEE-EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc
Q psy310 44 ILKSVSG-RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH 92 (240)
Q Consensus 44 ~L~~vsl-~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~ 92 (240)
.|+.+.. .|++|++++|+||||||||||++.|++ ....+.+.+...
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~ 54 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE 54 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence 4555543 689999999999999999999999998 222344555443
No 278
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.96 E-value=2.6e-06 Score=72.94 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=29.9
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhCCcccchhhh
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWL 228 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~~~~ 228 (240)
.|.+|++++|+|+||||||||++.|++....+.+|+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~ 61 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLL 61 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcC
Confidence 478999999999999999999999998644444443
No 279
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.95 E-value=3.6e-06 Score=72.09 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=26.2
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.|.+|++++|+||||||||||++.|++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999999984
No 280
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.95 E-value=4.9e-06 Score=74.42 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=51.1
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEE-EECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI-TINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 124 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V-~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~ 124 (240)
-|.+|+++.|+||+|||||||+..++... .+..|.| ++++.........+.+++.+|+..+....++++.+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~-~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~ 130 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEA-QKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEI 130 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHH
Confidence 58899999999999999999999999852 2334555 5555443333345667777777666555666665543
No 281
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.95 E-value=4.7e-06 Score=74.58 Aligned_cols=27 Identities=44% Similarity=0.742 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 196 SGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 196 ~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
+|++++|+|+||||||||+++|+|+..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999999999854
No 282
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.94 E-value=1.3e-06 Score=77.04 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=31.2
Q ss_pred ccceeeccceeEEeCCc------EEEEEcCCCCCHHHHHHHHhCCc
Q psy310 182 HEKTILKSVSGRLRSGE------LTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 182 ~~~~il~~vsl~I~~Ge------~valvG~NGsGKSTLlk~l~G~~ 221 (240)
++...+++++..+..++ ++||+|+||||||||+++|+++.
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34455666666665555 89999999999999999999874
No 283
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.94 E-value=4.2e-06 Score=67.53 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=28.9
Q ss_pred EEEEECCCCchHHHHHHHHhCCCC----CC------CccEEEECCcc
Q psy310 57 LTAIMGPSGAGKSTLLNILTGYKT----SG------TEGSITINGHE 93 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~~~----~~------~~G~V~v~g~~ 93 (240)
+++|+|+||||||||++.|+|... .+ ..|.|.++|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 589999999999999999999521 12 25778888754
No 284
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.94 E-value=5.2e-06 Score=64.95 Aligned_cols=31 Identities=29% Similarity=0.584 Sum_probs=25.2
Q ss_pred eccceeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218 (240)
Q Consensus 187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~ 218 (240)
+.+.++.+.+| ..+|+|+|||||||++++|+
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455556655 89999999999999999987
No 285
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.93 E-value=4.9e-06 Score=68.89 Aligned_cols=27 Identities=22% Similarity=0.462 Sum_probs=26.0
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILTG 219 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~G 219 (240)
-|.+|++++|+|+||||||||++.|++
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999999999999
No 286
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.92 E-value=6e-06 Score=77.10 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=32.7
Q ss_pred CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.+...+++++|++.+| +.+|+|+|||||||||.+|..+
T Consensus 46 ~nf~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 46 RNLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp ESBTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ccccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 3444678899999999 9999999999999999999553
No 287
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.92 E-value=2e-07 Score=78.45 Aligned_cols=37 Identities=32% Similarity=0.372 Sum_probs=29.1
Q ss_pred eeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310 191 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL 228 (240)
Q Consensus 191 sl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~ 228 (240)
+|++.+ ++++|+||||||||||+++|+|+.. .+++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~ 60 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF 60 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence 566766 7999999999999999999999843 345554
No 288
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.91 E-value=1.6e-07 Score=83.33 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=43.8
Q ss_pred CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC
Q psy310 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91 (240)
Q Consensus 34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g 91 (240)
+..+.++.+.+++++++.+.+|.+++|+|++|+|||||++.|++.+ .+..+.|.+.+
T Consensus 35 ~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~-~~~~~~v~v~~ 91 (341)
T 2p67_A 35 HPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL-IREGLKVAVIA 91 (341)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred CchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEEe
Confidence 3444555667888999999999999999999999999999999853 23345555433
No 289
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.91 E-value=4e-06 Score=73.54 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=29.0
Q ss_pred ccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 188 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 188 ~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
+.+++.+.+| +.+|+|+||||||||+++|..+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 4678889999 9999999999999999999855
No 290
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.90 E-value=1e-06 Score=77.77 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=28.1
Q ss_pred eeccceeEEeCC-------cEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 186 ILKSVSGRLRSG-------ELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 186 il~~vsl~I~~G-------e~valvG~NGsGKSTLlk~l~G~~ 221 (240)
+++++++.|..| +.++|+||||+|||||+++|+|..
T Consensus 33 ~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 33 VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 444445555443 789999999999999999999963
No 291
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.88 E-value=4.1e-06 Score=65.58 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 196 SGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 196 ~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
+|+.++|+|+||||||||+++|+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999974
No 292
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.85 E-value=4.3e-06 Score=68.19 Aligned_cols=34 Identities=35% Similarity=0.439 Sum_probs=29.2
Q ss_pred eecccee-EEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310 186 ILKSVSG-RLRSGELTAIMGPSGAGKSTLLNILTG 219 (240)
Q Consensus 186 il~~vsl-~I~~Ge~valvG~NGsGKSTLlk~l~G 219 (240)
.|+.+.. .|.+|++++|+|+||||||||++.|++
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445543 689999999999999999999999998
No 293
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.85 E-value=4.9e-06 Score=72.55 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=24.6
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 194 LRSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 194 I~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
+.+|++++|+|+||||||||+++|+ +..
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 3458999999999999999999999 743
No 294
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.84 E-value=6.9e-06 Score=66.93 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=27.4
Q ss_pred eeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 191 SGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 191 sl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
--++.+|.+++|+|++|||||||+++|+++.
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3467889999999999999999999999963
No 295
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.83 E-value=2.7e-05 Score=71.49 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred EEEEECCCCchHHHHHHHHhC-----------CCCCCCccEEEECCccCCchhhhh------------------------
Q psy310 57 LTAIMGPSGAGKSTLLNILTG-----------YKTSGTEGSITINGHERNLSQFRK------------------------ 101 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G-----------~~~~~~~G~V~v~g~~~~~~~~~~------------------------ 101 (240)
+|+|||++|+|||||++.|.| .......+.+.+.+....+.+...
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad 104 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEAD 104 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCC
Q ss_pred hceEEcccccccccccHHHHHHHHHHHhcCCC----ccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHH
Q psy310 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKD----LTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAM 177 (240)
Q Consensus 102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~----l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (240)
.+-+|.+ .....+..+............. ..+.........+.+...+........+...+.--..+......
T Consensus 105 ~il~VvD---~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 105 VIIFMVN---GREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAE 181 (456)
T ss_dssp EEEEEEE---SSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred EEEEEEe---CCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHh
Q ss_pred hcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219 (240)
Q Consensus 178 ~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G 219 (240)
..... .....-...-+++|+|+.|+|||||++.++|
T Consensus 182 ~l~~~------~~~~~~~~~~ki~ivG~~~vGKSslin~l~~ 217 (456)
T 4dcu_A 182 HFKNI------PETKYNEEVIQFCLIGRPNVGKSSLVNAMLG 217 (456)
T ss_dssp TGGGS------CSSCCCTTCEEEEEECSTTSSHHHHHHHHHT
T ss_pred hcccc------cccccccccceeEEecCCCCCHHHHHHHHhC
No 296
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.83 E-value=4.9e-06 Score=74.09 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=31.7
Q ss_pred eeccc-eeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 186 ILKSV-SGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 186 il~~v-sl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
.|+.+ .+.|.+|++++|+|+||||||||++.|+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45554 5889999999999999999999999999974
No 297
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.81 E-value=7.9e-06 Score=74.45 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=27.4
Q ss_pred eEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 192 GRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 192 l~I~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
+++..|++++|+|+||||||||+++|+++..
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5567789999999999999999999998633
No 298
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.79 E-value=9.8e-06 Score=66.64 Aligned_cols=56 Identities=23% Similarity=0.214 Sum_probs=38.3
Q ss_pred CCEEEEECCCCchHHHHHHHHhCCCC--CCCccEEEE--------CCccCC----chhhhhhceEEcccc
Q psy310 55 GELTAIMGPSGAGKSTLLNILTGYKT--SGTEGSITI--------NGHERN----LSQFRKLSCYIMQDN 110 (240)
Q Consensus 55 Ge~vgLvG~NGSGKSTLLr~L~G~~~--~~~~G~V~v--------~g~~~~----~~~~~~~~g~v~Q~~ 110 (240)
+.+++|+|++||||||++++|++.+. .++.|.+.. .|.+.. ...+...+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 56899999999999999999997422 234566654 444322 123455678888764
No 299
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.79 E-value=8.4e-06 Score=66.45 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=24.9
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 194 LRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 194 I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
..+|++++|+|++|||||||+++|+++
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999999999875
No 300
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.77 E-value=4.8e-06 Score=72.58 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=31.5
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc-EEEECCcc
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG-SITINGHE 93 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G-~V~v~g~~ 93 (240)
.+|++++|+|+|||||||++..|++.+ .+.+| .|.+.+.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH-HHTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCEEEEEecC
Confidence 479999999999999999999999963 33456 56554444
No 301
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.77 E-value=1e-05 Score=64.32 Aligned_cols=38 Identities=34% Similarity=0.463 Sum_probs=29.2
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc--EEEECCc
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG--SITINGH 92 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G--~V~v~g~ 92 (240)
.+|++++|+|++||||||++++|++.+. + .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-C-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-H-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-h-CCCcEEEECCh
Confidence 4799999999999999999999998532 2 34 5555553
No 302
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.77 E-value=7.2e-06 Score=78.22 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=25.5
Q ss_pred eeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc---chhhh
Q psy310 191 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL---RQLWL 228 (240)
Q Consensus 191 sl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~---~~~~~ 228 (240)
++++.. +||+|+||||||||+++|+|+..| +.+++
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~ 79 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTR 79 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCC
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEE
Confidence 344443 999999999999999999999645 35544
No 303
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.77 E-value=1.1e-05 Score=64.83 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 199 LTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 199 ~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
+++|+|+||||||||++.|+|...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 7999999999999999999997543
No 304
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=6.1e-06 Score=72.47 Aligned_cols=55 Identities=16% Similarity=0.053 Sum_probs=30.4
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310 57 LTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ 111 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~ 111 (240)
.+.|.||+|+|||||+++|++.+..+..|.+.++|.+... ......+++++|.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 4899999999999999999993245678999888765421 112344566666543
No 305
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.76 E-value=6.9e-07 Score=84.11 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=42.0
Q ss_pred ceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC
Q psy310 35 NNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91 (240)
Q Consensus 35 ~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g 91 (240)
+..+++...++.++++++ +|++++|+||+|+|||||+++|++.. .+..|.|.+.+
T Consensus 89 vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~ 143 (543)
T 3m6a_A 89 VKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGG 143 (543)
T ss_dssp HHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC
T ss_pred HHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecc
Confidence 344444555678888888 89999999999999999999999963 34456665544
No 306
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.75 E-value=1.1e-05 Score=64.71 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=26.4
Q ss_pred eeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
++|+...++.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999874
No 307
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.75 E-value=1.3e-05 Score=65.12 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|+|++||||||++++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999983
No 308
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.74 E-value=1.8e-05 Score=69.95 Aligned_cols=31 Identities=29% Similarity=0.584 Sum_probs=24.4
Q ss_pred eeeeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 76 (240)
Q Consensus 45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~ 76 (240)
+.+..+++.+| +.+|+|||||||||+|.+|.
T Consensus 14 ~~~~~i~f~~~-~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccCeEEcCCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455666554 88999999999999999874
No 309
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.73 E-value=1.5e-05 Score=65.42 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=23.4
Q ss_pred eeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310 47 SVSGRLRSGELTAIMGPSGAGKSTLLNILT 76 (240)
Q Consensus 47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~ 76 (240)
+.++++.+ .+.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455555 489999999999999999885
No 310
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.73 E-value=1e-05 Score=71.94 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=35.0
Q ss_pred CCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEE
Q psy310 33 TNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSI 87 (240)
Q Consensus 33 ~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V 87 (240)
+++.+.++. ..+|++++++++ .++|||++|||||||++.|.|.. .+...|.+
T Consensus 12 ~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 12 QRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp TTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred HHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 344444443 468999999998 99999999999999999999941 23344443
No 311
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.72 E-value=1.5e-05 Score=65.48 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.8
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
..-+|+.++|+||+|||||||+++|+++
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3457899999999999999999999986
No 312
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.70 E-value=1.5e-05 Score=66.65 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=30.3
Q ss_pred eeeeeEEEEe---CCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEEC
Q psy310 44 ILKSVSGRLR---SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN 90 (240)
Q Consensus 44 ~L~~vsl~I~---~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~ 90 (240)
-|.+++|.+. +|.+++|.|++||||||+++.|+..+. + .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-K-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-c-CCCceee
Confidence 3667777776 999999999999999999999998643 3 4555543
No 313
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.70 E-value=1.2e-05 Score=70.81 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.4
Q ss_pred eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
+.+++|++.+|++++|+|+||+||||++..|+++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999999999999999986
No 314
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.68 E-value=2.3e-05 Score=64.31 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=25.2
Q ss_pred eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219 (240)
Q Consensus 187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G 219 (240)
+.+.++.+.+| ..+|+|+|||||||++.+|.-
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 34455555565 899999999999999998863
No 315
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.67 E-value=1.6e-05 Score=64.34 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q psy310 57 LTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G 77 (240)
+++|+|++||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 316
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.66 E-value=1.5e-05 Score=65.99 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=32.4
Q ss_pred eeeee-EEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc
Q psy310 44 ILKSV-SGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH 92 (240)
Q Consensus 44 ~L~~v-sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~ 92 (240)
.|+.+ ..-+++|++++|+||||||||||+..++........+.+.+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 34444 55689999999999999999999655543212222344455443
No 317
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.66 E-value=4.3e-05 Score=69.78 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=29.8
Q ss_pred EEEEECCCCchHHHHHHHHhCCCC-----------CCCccEEEECCcc
Q psy310 57 LTAIMGPSGAGKSTLLNILTGYKT-----------SGTEGSITINGHE 93 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~~~-----------~~~~G~V~v~g~~ 93 (240)
.++|||++|+|||||++.|.|... .+..|.+.++|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 799999999999999999999621 1356888888864
No 318
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.66 E-value=8.7e-06 Score=72.42 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=31.2
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~ 93 (240)
.++.+++|+|++|||||||++.|.|. ..+..|.|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~-~~~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM-LTERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH-hhhcCCeEEEEeec
Confidence 35789999999999999999999995 33445666665544
No 319
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.65 E-value=2e-05 Score=64.16 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=25.1
Q ss_pred EeCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310 52 LRSGELTAIMGPSGAGKSTLLNILTGYK 79 (240)
Q Consensus 52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~~ 79 (240)
..+|.+++|+||+|||||||++.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999999998753
No 320
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.65 E-value=2.4e-05 Score=69.09 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=25.2
Q ss_pred eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219 (240)
Q Consensus 187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G 219 (240)
+.+..+.+.+| +.+|+||||||||||+++|+.
T Consensus 14 ~~~~~i~f~~~-~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccCeEEcCCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34455556666 899999999999999998843
No 321
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.65 E-value=3.8e-05 Score=68.40 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=44.2
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEE-EECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI-TINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 124 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V-~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~ 124 (240)
-+++|+++.|.||+|||||||+..++..... ..|.+ +++..........+..++.+++..+....++++.+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~ 130 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEI 130 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 5789999999999999999998888753222 23444 4443322112223445655555444444456665544
No 322
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.64 E-value=8.4e-06 Score=72.20 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=33.5
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
.+.+++++++.+.+|.+++|+|++|+|||||++.|++.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34577788888999999999999999999999999865
No 323
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.63 E-value=1.8e-05 Score=71.71 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=26.0
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
.+.+|++++|+|+||+|||||+++|+|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4678999999999999999999999994
No 324
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.61 E-value=2.5e-05 Score=61.65 Aligned_cols=26 Identities=46% Similarity=0.620 Sum_probs=22.8
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.+|.+++|+|++|+|||||++.|.+.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999999985
No 325
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.59 E-value=1.3e-05 Score=75.53 Aligned_cols=30 Identities=43% Similarity=0.471 Sum_probs=27.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
.+++|++++|+|+||||||||+++|+|...
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 578999999999999999999999999743
No 326
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.58 E-value=2.8e-05 Score=67.49 Aligned_cols=57 Identities=18% Similarity=0.065 Sum_probs=38.9
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 124 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~ 124 (240)
.++.+++|+|++|||||||++.|.+++.+ .| . .++.+.+|+||+.+++ .+..+++.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~--~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~ 85 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME--KY------G------GEKSIGYASIDDFYLT-HEDQLKLNE 85 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh--cC------C------CCceEEEeccccccCC-hHHHHHHhc
Confidence 46789999999999999999999997432 22 0 0233445588887664 345555543
No 327
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.57 E-value=8.4e-06 Score=66.82 Aligned_cols=42 Identities=26% Similarity=0.223 Sum_probs=33.7
Q ss_pred EEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc--EEEECCc
Q psy310 50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG--SITINGH 92 (240)
Q Consensus 50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G--~V~v~g~ 92 (240)
+.+.+|.++.|+|++||||||+++.|++.+ .+..| .+.+++.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l-~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL-VRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH-HHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHh-ccccCCcEEEECCh
Confidence 446789999999999999999999999863 33456 6777653
No 328
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.57 E-value=3e-05 Score=72.32 Aligned_cols=38 Identities=24% Similarity=0.575 Sum_probs=34.2
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
+..+.+++++++.+.+| +.|+||+|+|||||+++|++.
T Consensus 50 l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 50 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp HHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred hhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999 999999999999999999985
No 329
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.56 E-value=2.7e-05 Score=68.20 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=29.3
Q ss_pred cceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 189 ~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
.+++...+|++++|+|+|||||||++..|+++.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 456677899999999999999999999999873
No 330
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.55 E-value=1.1e-05 Score=76.67 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=37.7
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL 223 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~ 223 (240)
++...+++.+++.+..|+.++|+||+|+|||||+++|+++..+
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4455678889999999999999999999999999999998543
No 331
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.53 E-value=1.1e-05 Score=75.42 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=34.0
Q ss_pred cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
..+...+++++|.+.+| ..+|+|+||||||||+++|..+
T Consensus 45 i~nf~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 45 IRNLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EESBTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred cccccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 34556789999999999 9999999999999999999554
No 332
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.53 E-value=1.2e-05 Score=73.60 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=42.6
Q ss_pred ceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC
Q psy310 35 NNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95 (240)
Q Consensus 35 ~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~ 95 (240)
+...++... ++++|+ ++++++++|++||||||++..|++.+ .+..+.|.+.+.|..
T Consensus 82 L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l-~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 82 LKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY-KGKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEEECCSS
T ss_pred HHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEeecccc
Confidence 334444433 567777 89999999999999999999999974 345678888776653
No 333
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.52 E-value=4e-05 Score=61.39 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=21.5
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
.+++++++..+.. +++|+|++|+|||||++.+++-
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998888 8999999999999999999873
No 334
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.51 E-value=1.4e-05 Score=74.49 Aligned_cols=49 Identities=24% Similarity=0.462 Sum_probs=39.9
Q ss_pred CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC
Q psy310 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER 94 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~ 94 (240)
...+++++++.+++| ++|+||+|+|||||+++|++... .+.+.+++.+.
T Consensus 52 ~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~ 100 (499)
T 2dhr_A 52 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDF 100 (499)
T ss_dssp CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGG
T ss_pred chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHH
Confidence 345677888999998 99999999999999999999632 56788877553
No 335
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.50 E-value=4.9e-05 Score=63.50 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=24.8
Q ss_pred eeccceeEEe---CCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 186 ILKSVSGRLR---SGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 186 il~~vsl~I~---~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
=|.+++|++. +|..++|.|++||||||+++.|+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3566777766 8999999999999999999999875
No 336
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.49 E-value=2.2e-05 Score=70.98 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=30.6
Q ss_pred eeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
|+.+.|.+|++++|+||+|+|||||++.|+..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999874
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.48 E-value=4.5e-05 Score=60.62 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhC
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999985
No 338
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.47 E-value=4.7e-05 Score=66.16 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=29.6
Q ss_pred ccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 188 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 188 ~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
++++|+ +|++++|+|+||+||||++..|+++.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 678888 99999999999999999999999973
No 339
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.47 E-value=4.5e-05 Score=61.06 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=20.7
Q ss_pred eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
.+++++++..++. .++|+|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3678899988776 789999999999999999987
No 340
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.47 E-value=7.8e-06 Score=71.91 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=39.9
Q ss_pred CCceecCCCceeeeeeEEEEeCCCE--EEEECCCCchHHHHHHHHhCC
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGEL--TAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~--vgLvG~NGSGKSTLLr~L~G~ 78 (240)
++.+.-+|...+++.++..|..|++ +.|.||+|+||||++++|++.
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4455556677788999999999998 999999999999999999985
No 341
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.44 E-value=4.4e-05 Score=61.80 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.9
Q ss_pred CCEEEEECCCCchHHHHHHHHhCC
Q psy310 55 GELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 55 Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
..+++|+|++||||||+++.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 342
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.44 E-value=2.2e-05 Score=63.41 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=31.7
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
..+++++++.++.. +++|+|++|+|||||++.+++-
T Consensus 13 ~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 35788888888887 7999999999999999999874
No 343
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.43 E-value=7.2e-05 Score=58.30 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|+|++|+|||||++.|.|.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 344
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.42 E-value=5.2e-05 Score=62.67 Aligned_cols=32 Identities=16% Similarity=0.394 Sum_probs=26.0
Q ss_pred eccc-eeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310 187 LKSV-SGRLRSGELTAIMGPSGAGKSTLLNILT 218 (240)
Q Consensus 187 l~~v-sl~I~~Ge~valvG~NGsGKSTLlk~l~ 218 (240)
|+.+ ..-|.+|+.++|+|+||||||||+..++
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4444 5568999999999999999999965554
No 345
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.41 E-value=7.3e-05 Score=59.69 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=25.7
Q ss_pred EEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 50 GRLRSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+...+|.++.|+|++||||||+++.|+..
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34468999999999999999999999985
No 346
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.40 E-value=4.2e-05 Score=66.50 Aligned_cols=26 Identities=46% Similarity=0.551 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++.+++|||++|+|||||++.|.|.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34558999999999999999999995
No 347
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.40 E-value=7.6e-05 Score=62.14 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.6
Q ss_pred EeCCCEEEEECCCCchHHHHHHHHhC
Q psy310 52 LRSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 52 I~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
-.+|.+++|+|++||||||++++|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999999997
No 348
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.38 E-value=1.2e-05 Score=71.80 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=32.0
Q ss_pred eeeeeeEEEEeCCCE--EEEECCCCchHHHHHHHHhCC
Q psy310 43 TILKSVSGRLRSGEL--TAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 43 ~~L~~vsl~I~~Ge~--vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.+++.+++.+++|++ ++|+|++||||||++++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 356777888899999 999999999999999999984
No 349
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.37 E-value=9e-06 Score=72.65 Aligned_cols=40 Identities=35% Similarity=0.375 Sum_probs=33.5
Q ss_pred CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.|+...++.+.++++++|.| +|||++|+|||||++.|.+.
T Consensus 21 ~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 21 ANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred ccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 45555666777888888877 99999999999999999885
No 350
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.36 E-value=0.0001 Score=66.77 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=23.8
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILT 218 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~ 218 (240)
-|.+|++++|+|++|||||||++.|+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 58999999999999999999999553
No 351
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.36 E-value=8.4e-05 Score=64.61 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=25.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 195 RSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 195 ~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
.+|++++|+|+|||||||++..|++...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999998743
No 352
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.35 E-value=9.9e-05 Score=57.56 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|+|++||||||+++.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 353
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.34 E-value=4.5e-05 Score=71.73 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=32.5
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
...++.++++++ +|+.++|+||+|+|||||+++|++..
T Consensus 95 ~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 95 EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 345667777777 89999999999999999999999863
No 354
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.34 E-value=0.00012 Score=57.66 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCEEEEECCCCchHHHHHHHHhCC
Q psy310 55 GELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 55 Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999985
No 355
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.34 E-value=0.00016 Score=64.74 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=29.8
Q ss_pred CCCE-EEEECCCCchHHHHHHHHhCCCCC----------CCccEEEECCccC
Q psy310 54 SGEL-TAIMGPSGAGKSTLLNILTGYKTS----------GTEGSITINGHER 94 (240)
Q Consensus 54 ~Ge~-vgLvG~NGSGKSTLLr~L~G~~~~----------~~~G~V~v~g~~~ 94 (240)
.|-. ++|+|++|||||||++.|+|.... +..|.+.++|..+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 3455 999999999999999999996321 3467888877543
No 356
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.33 E-value=3.3e-05 Score=69.00 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=32.0
Q ss_pred eeeccceeEEeCCcE--EEEEcCCCCCHHHHHHHHhCC
Q psy310 185 TILKSVSGRLRSGEL--TAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~--valvG~NGsGKSTLlk~l~G~ 220 (240)
.+++.+++.|.+|++ ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 367778888889988 999999999999999999985
No 357
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.32 E-value=7.9e-05 Score=64.63 Aligned_cols=28 Identities=21% Similarity=0.244 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 195 RSGELTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 195 ~~Ge~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
.++.+|+|+|++|||||||++.|+++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999999999744
No 358
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.32 E-value=1e-05 Score=70.58 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=37.3
Q ss_pred ee-eEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC
Q psy310 46 KS-VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER 94 (240)
Q Consensus 46 ~~-vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~ 94 (240)
++ ++|+++ +++++++|++|+||||++..|++.+ .+..++|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~-~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY-KKKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH-HHTTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEecCC
Confidence 45 777765 9999999999999999999999863 34466787766554
No 359
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.32 E-value=0.00011 Score=65.62 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=27.7
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~ 218 (240)
..++++++.+.+| ..+|+|+|||||||++.+|+
T Consensus 14 r~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 14 KSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3456667777776 89999999999999999986
No 360
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.30 E-value=0.00012 Score=58.10 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|+|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
No 361
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.30 E-value=0.00013 Score=57.65 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|+|++|+|||||++.|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 362
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.26 E-value=0.00012 Score=64.99 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 196 SGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 196 ~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
.+.+|+|+|++|||||||++.|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999985
No 363
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.25 E-value=0.00016 Score=57.29 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+|.++.|.|++||||||+++.|+..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999873
No 364
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.25 E-value=1.8e-05 Score=63.94 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=29.9
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
..+++++++..++. .++|+|++|+|||||++.+.+
T Consensus 13 ~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 13 SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 35778888877776 579999999999999999987
No 365
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.24 E-value=7.9e-05 Score=62.59 Aligned_cols=44 Identities=27% Similarity=0.609 Sum_probs=28.6
Q ss_pred eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93 (240)
Q Consensus 45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~ 93 (240)
++.+++.+.+| +.|+||+|+|||||+++|++....+ .+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~---~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC---EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC---EEEEeHHH
Confidence 44445555554 8999999999999999999863322 35666544
No 366
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.23 E-value=0.00013 Score=64.72 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=27.2
Q ss_pred ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
..+|+++++++. .|+|+|+.|||||||+++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 357888888887 8999999999999999999994
No 367
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.23 E-value=0.00016 Score=56.13 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=18.4
Q ss_pred EEEEECCCCchHHHHHHHH
Q psy310 57 LTAIMGPSGAGKSTLLNIL 75 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L 75 (240)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 368
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.22 E-value=0.0002 Score=63.96 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=26.1
Q ss_pred eeeeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 76 (240)
Q Consensus 45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~ 76 (240)
+++..+++.+ .+.+|+|+|||||||+|.+|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4667777766 489999999999999999986
No 369
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.21 E-value=0.00015 Score=65.65 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=30.0
Q ss_pred cceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 189 ~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
|+.+.|.+|++++|+|++|+|||||++.|+.+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 78899999999999999999999999999875
No 370
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.20 E-value=0.00018 Score=65.13 Aligned_cols=41 Identities=27% Similarity=0.435 Sum_probs=31.5
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCCC----------CCCCccEEEECC
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGYK----------TSGTEGSITING 91 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~----------~~~~~G~V~v~g 91 (240)
.+..+..++|||++|+|||||+++|+|.. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 45788999999999999999999999951 124567776654
No 371
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.19 E-value=5.7e-05 Score=72.71 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=29.2
Q ss_pred EEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEE
Q psy310 49 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSI 87 (240)
Q Consensus 49 sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V 87 (240)
++.+.+++.++|+|++|+|||||++.|.+.... +..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 467789999999999999999999999964221 245666
No 372
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.18 E-value=0.00016 Score=58.48 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhC
Q psy310 197 GELTAIMGPSGAGKSTLLNILTG 219 (240)
Q Consensus 197 Ge~valvG~NGsGKSTLlk~l~G 219 (240)
.-+|+|+|++||||||+++.|++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999964
No 373
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.18 E-value=0.00016 Score=60.70 Aligned_cols=34 Identities=26% Similarity=0.663 Sum_probs=24.8
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
..++.+.+.+.+| +.|+|++|+|||||+++|++.
T Consensus 35 ~~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 35 SRFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGC-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence 4566666666666 999999999999999999875
No 374
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.17 E-value=0.00016 Score=59.12 Aligned_cols=28 Identities=36% Similarity=0.297 Sum_probs=24.8
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
.+.+|..++|+|.+||||||+++.|++.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999999874
No 375
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=6e-05 Score=66.18 Aligned_cols=36 Identities=25% Similarity=0.483 Sum_probs=29.5
Q ss_pred eeeccceeEEeCCcE--EEEEcCCCCCHHHHHHHHhCC
Q psy310 185 TILKSVSGRLRSGEL--TAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~--valvG~NGsGKSTLlk~l~G~ 220 (240)
.+++.++..|+.|+. +.|.||+|+||||++++|++.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 355555666677776 999999999999999999986
No 376
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.15 E-value=0.00021 Score=57.20 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|+|++||||||+++.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999984
No 377
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.15 E-value=0.0002 Score=57.50 Aligned_cols=38 Identities=34% Similarity=0.329 Sum_probs=27.3
Q ss_pred CEEEEECCCCchHHHHHHHHhCCCCC--CCccEEEECCcc
Q psy310 56 ELTAIMGPSGAGKSTLLNILTGYKTS--GTEGSITINGHE 93 (240)
Q Consensus 56 e~vgLvG~NGSGKSTLLr~L~G~~~~--~~~G~V~v~g~~ 93 (240)
.+++|+|++|||||||++.|.+.+.. ..-|.|...+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 57999999999999999999885221 123666665543
No 378
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.14 E-value=0.00019 Score=62.47 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=28.4
Q ss_pred cc-ceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 188 KS-VSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 188 ~~-vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
.+ ++|+++ |.+++++|++|+||||++..|++.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 56 788876 999999999999999999999865
No 379
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.13 E-value=0.00025 Score=56.23 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999864
No 380
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.13 E-value=0.00022 Score=59.97 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.0
Q ss_pred CCEEEEECCCCchHHHHHHHHhC
Q psy310 55 GELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 55 Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
.-+++|+||+||||||+++.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999995
No 381
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.13 E-value=0.00018 Score=56.71 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
++.|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 382
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.12 E-value=0.0002 Score=60.56 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|+||+|||||||.+.|+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999874
No 383
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.12 E-value=0.00021 Score=56.84 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999863
No 384
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.10 E-value=0.00024 Score=56.22 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhC
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
.++.++.|+|++||||||+++.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3577899999999999999999984
No 385
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.09 E-value=0.00035 Score=63.76 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=28.5
Q ss_pred ccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 188 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 188 ~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
++++|+ +|++++++|++||||||++..|+++
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 678887 8999999999999999999999986
No 386
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.09 E-value=0.00027 Score=55.40 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q psy310 57 LTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G 77 (240)
++.|+|++||||||+.+.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.09 E-value=0.00026 Score=57.86 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.3
Q ss_pred CCEEEEECCCCchHHHHHHHHhC
Q psy310 55 GELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 55 Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
+-+++|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 388
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.08 E-value=0.00018 Score=60.68 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=31.4
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~ 93 (240)
...++.++.|+|++||||||+.+.|+..+. .+.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHH
Confidence 456788999999999999999999998532 2456676643
No 389
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.07 E-value=0.00037 Score=57.81 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.8
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|++|+|||||++.|.|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999995
No 390
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.06 E-value=0.00035 Score=56.12 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCCC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGYK 79 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~~ 79 (240)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999863
No 391
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.04 E-value=0.00019 Score=67.06 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=35.1
Q ss_pred eeEEEEeCCCEEEEECCCCchHHHHHHHHhC-CCCCCCccEEEECCcc
Q psy310 47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE 93 (240)
Q Consensus 47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G-~~~~~~~G~V~v~g~~ 93 (240)
.+.+++.++.+++|+|++||||||+++.|.. +......+++.+...|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD 206 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID 206 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence 5789999999999999999999999998875 2122334556554433
No 392
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.04 E-value=0.00032 Score=56.46 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+|-+++|.|+.||||||+.+.|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999874
No 393
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.03 E-value=0.00029 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.1
Q ss_pred CEEEEECCCCchHHHHHHHHhCC
Q psy310 56 ELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 56 e~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.+++|+|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999974
No 394
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.01 E-value=0.00016 Score=58.65 Aligned_cols=22 Identities=55% Similarity=0.738 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|+|++||||||+++.|+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 395
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.01 E-value=0.00034 Score=55.76 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++-+++|+|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999999863
No 396
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.00 E-value=0.00037 Score=56.34 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhC
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
.+|-+++|.|+.||||||+.+.|+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999999986
No 397
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.00 E-value=0.00035 Score=55.37 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.3
Q ss_pred CCEEEEECCCCchHHHHHHHHhCC
Q psy310 55 GELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 55 Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 398
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.98 E-value=0.00035 Score=56.68 Aligned_cols=21 Identities=57% Similarity=0.738 Sum_probs=18.8
Q ss_pred EEEECCCCchHHHHHHHHhCC
Q psy310 58 TAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 58 vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+.|+||||||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998753
No 399
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.97 E-value=0.0002 Score=60.42 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=24.3
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILTG 219 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~G 219 (240)
...++..+.|+|++||||||+.+.|+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 566788999999999999999999976
No 400
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.97 E-value=0.00041 Score=57.53 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcc
Q psy310 199 LTAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 199 ~valvG~NGsGKSTLlk~l~G~~~ 222 (240)
+|+|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 699999999999999999999644
No 401
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.97 E-value=0.00018 Score=64.49 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEEC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN 90 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~ 90 (240)
.+..++|+|++|||||||++.|..... ...+.|.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-HCCCEEEEE
Confidence 677899999999999999999988532 344556553
No 402
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.96 E-value=0.00042 Score=56.02 Aligned_cols=25 Identities=40% Similarity=0.458 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhC
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
.+|-+++|+|+.||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 403
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.94 E-value=0.00026 Score=63.06 Aligned_cols=33 Identities=39% Similarity=0.462 Sum_probs=27.9
Q ss_pred cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
.+.+.++++|.| +|+|++|+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 455777888766 999999999999999998863
No 404
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.94 E-value=0.00039 Score=55.02 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
++.|+|++||||||+.+.|+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 405
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.94 E-value=0.0003 Score=65.17 Aligned_cols=37 Identities=24% Similarity=0.586 Sum_probs=31.9
Q ss_pred ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
.....++++++.+.+| +.|+||+|+|||||+++|++.
T Consensus 36 ~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 36 KDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred hChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 3455788888888888 899999999999999999973
No 406
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.90 E-value=0.00039 Score=60.00 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=28.0
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g 91 (240)
..+..+.|+||+||||||+.+.|+..+. .+.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence 3567899999999999999999986422 25566765
No 407
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.90 E-value=0.00047 Score=61.52 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=25.6
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
-|.+|+++.|+|++|||||||+..++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999999998875
No 408
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.89 E-value=0.00051 Score=62.59 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 198 ELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 198 e~valvG~NGsGKSTLlk~l~G~~ 221 (240)
-+++|+|++|+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 389999999999999999999974
No 409
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.87 E-value=0.00062 Score=55.73 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+|-++.|+|+.||||||+.+.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999864
No 410
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.87 E-value=0.00035 Score=68.64 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=29.2
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
.+++ +|.+.+|+.+.|+|++|||||||+++|++.
T Consensus 228 ~~~~--~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 228 ALFK--AIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGGT--SSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHHH--hcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3444 356889999999999999999999999996
No 411
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.86 E-value=0.00048 Score=58.49 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=20.8
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|++|||||||++.|.|.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999995
No 412
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.86 E-value=0.00055 Score=55.02 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999884
No 413
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.86 E-value=0.00056 Score=54.51 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|.|+.||||||+++.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 414
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.86 E-value=0.00055 Score=55.68 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q psy310 57 LTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G 77 (240)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 415
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.85 E-value=0.00043 Score=54.57 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=18.0
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
++.++.|.|+.||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999864
No 416
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.84 E-value=0.00046 Score=62.42 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.0
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~~ 221 (240)
.+..|.+++|+|++|+|||||+++|+|..
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~ 46 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQ 46 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45678899999999999999999999973
No 417
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.84 E-value=0.00058 Score=54.47 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
..+-+++|+|+.||||||+.+.|+..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 418
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.81 E-value=0.00053 Score=59.21 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=31.1
Q ss_pred EEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC
Q psy310 50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91 (240)
Q Consensus 50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g 91 (240)
+.+.++..+.|.||+|+|||||+++|++... .+.+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEh
Confidence 3467899999999999999999999998632 34566654
No 419
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.80 E-value=0.00065 Score=55.31 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 420
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.78 E-value=0.00059 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.6
Q ss_pred CEEEEECCCCchHHHHHHHHhCC
Q psy310 56 ELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 56 e~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999863
No 421
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.78 E-value=0.00084 Score=54.07 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.+-+++|+|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999863
No 422
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.77 E-value=0.00074 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 423
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.77 E-value=0.00078 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=21.1
Q ss_pred CEEEEECCCCchHHHHHHHHhCC
Q psy310 56 ELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 56 e~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999863
No 424
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.77 E-value=0.0007 Score=55.75 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=21.9
Q ss_pred eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 53 RSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++.+++|+|+.||||||+++.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
No 425
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.76 E-value=0.00073 Score=53.54 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999863
No 426
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.75 E-value=0.00078 Score=53.84 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred CEEEEECCCCchHHHHHHHHhCC
Q psy310 56 ELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 56 e~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.+++|+|++|||||||+..|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999998874
No 427
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.74 E-value=0.00066 Score=52.11 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999999884
No 428
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.73 E-value=0.00072 Score=51.79 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.|.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 429
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.00072 Score=53.48 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.6
Q ss_pred CCEEEEECCCCchHHHHHHHHhCC
Q psy310 55 GELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 55 Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
-=.++|+|+.|+|||||++.|.+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999985
No 430
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.73 E-value=0.00089 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.650 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.|.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999984
No 431
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.72 E-value=0.00066 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.5
Q ss_pred CEEEEECCCCchHHHHHHHHhCC
Q psy310 56 ELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 56 e~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 432
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.0009 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.|.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 433
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.72 E-value=0.00096 Score=59.23 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=24.3
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310 193 RLRSGELTAIMGPSGAGKSTLLNILTG 219 (240)
Q Consensus 193 ~I~~Ge~valvG~NGsGKSTLlk~l~G 219 (240)
-|.+|+.+.|.|++|||||||+..++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999887774
No 434
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.72 E-value=0.00053 Score=56.90 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.3
Q ss_pred EeCCCEEEEECCCCchHHHHHHHHhC
Q psy310 52 LRSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 52 I~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
+.+|+.++|+||+||||||++.++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 45799999999999999998876653
No 435
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.71 E-value=0.00092 Score=51.42 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999874
No 436
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.70 E-value=0.00078 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.7
Q ss_pred CEEEEECCCCchHHHHHHHHhCC
Q psy310 56 ELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 56 e~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.+++|+|+.||||||+.+.|+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999863
No 437
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.69 E-value=0.00084 Score=56.34 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|.|+.||||||+.+.|+..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999873
No 438
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.69 E-value=0.0012 Score=57.96 Aligned_cols=38 Identities=32% Similarity=0.209 Sum_probs=33.4
Q ss_pred CCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 39 ~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
+.....++...+.+ .|.-++|+|+||+|||||+..|.+
T Consensus 129 ~~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 129 LARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TCEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 44567889988888 788999999999999999999987
No 439
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.67 E-value=0.00087 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999884
No 440
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.67 E-value=0.00078 Score=53.17 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999884
No 441
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.66 E-value=0.00095 Score=54.22 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.8
Q ss_pred CEEEEECCCCchHHHHHHHHhCC
Q psy310 56 ELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 56 e~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
-+++|+|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
No 442
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.66 E-value=0.00093 Score=51.83 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 443
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.65 E-value=0.00079 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 444
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.65 E-value=0.00097 Score=53.63 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.0
Q ss_pred CCEEEEECCCCchHHHHHHHHhCC
Q psy310 55 GELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 55 Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
..+++|+|+.||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999853
No 445
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.65 E-value=0.00091 Score=50.96 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.3
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q psy310 57 LTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G 77 (240)
.++|+|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998876
No 446
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.65 E-value=0.00079 Score=55.14 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.+-++.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
No 447
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.64 E-value=0.00091 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.|.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 448
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.64 E-value=0.0014 Score=57.27 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=25.6
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
-+++|+++.|.||+|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5889999999999999999999988763
No 449
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.64 E-value=0.00062 Score=63.56 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=34.9
Q ss_pred cceeEEeCCcEEEEEcCCCCCHHHHHHHHhC--C--cccchhhhccCChh
Q psy310 189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTG--Y--KILRQLWLLEYSHK 234 (240)
Q Consensus 189 ~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G--~--~~~~~~~~~~~~~~ 234 (240)
.+.+.+.++++++|+|.+||||||+++.|.. + ..++++.+.-.|||
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 4678889999999999999999999999875 2 23455544444555
No 450
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.64 E-value=0.00025 Score=65.04 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=40.3
Q ss_pred ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc-EEEECCccCC
Q psy310 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG-SITINGHERN 95 (240)
Q Consensus 42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G-~V~v~g~~~~ 95 (240)
-+.|+.+..-+.+|+++.|.|++|+|||||+..|++... +..| .|.+.+.+..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-TKTNENVAIFSLEMS 243 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-HHSSCCEEEEESSSC
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-HhCCCcEEEEECCCC
Confidence 356888887899999999999999999999999988422 2234 5666555443
No 451
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.63 E-value=0.00094 Score=51.33 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 452
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.63 E-value=0.00061 Score=62.43 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=39.9
Q ss_pred eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc----chhhh-ccCChhhh
Q psy310 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL----RQLWL-LEYSHKDL 236 (240)
Q Consensus 185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~----~~~~~-~~~~~~~~ 236 (240)
..|+.+..-+++|+.+.|.|++|+|||||+..|++.-.+ .=+|+ +|.|+..+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l 247 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQL 247 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 457777778999999999999999999999998885322 23445 67776554
No 453
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.62 E-value=0.00097 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.|.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999884
No 454
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.62 E-value=0.0014 Score=50.77 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCchHHHHHHHHhC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
+.-.++|+|+.|+|||||++.|.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 455799999999999999999987
No 455
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.62 E-value=0.001 Score=59.41 Aligned_cols=28 Identities=36% Similarity=0.538 Sum_probs=21.6
Q ss_pred eCCcE-EEEEcCCCCCHHHHHHHHhCCcc
Q psy310 195 RSGEL-TAIMGPSGAGKSTLLNILTGYKI 222 (240)
Q Consensus 195 ~~Ge~-valvG~NGsGKSTLlk~l~G~~~ 222 (240)
+.|-+ |+|+|++|||||||++.|+|...
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 34555 99999999999999999999743
No 456
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.61 E-value=0.0011 Score=56.78 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.8
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|++|+|||||++.|.|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999994
No 457
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.60 E-value=0.00029 Score=65.22 Aligned_cols=33 Identities=27% Similarity=0.615 Sum_probs=27.3
Q ss_pred eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 44 ~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++++++.+++| +.|+||+|+|||||+++|++.
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 345566666776 889999999999999999984
No 458
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.60 E-value=0.001 Score=50.93 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 459
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.59 E-value=0.001 Score=51.58 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988773
No 460
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.58 E-value=0.0019 Score=53.11 Aligned_cols=39 Identities=28% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 39 ~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
......++..-+.+ .|..++|+||+|||||||+..|+..
T Consensus 19 ~a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 19 LAERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp --CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred cCcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 33445677766665 6889999999999999999999874
No 461
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.58 E-value=0.0011 Score=50.78 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.5
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q psy310 57 LTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G 77 (240)
.++|+|+.|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 462
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0011 Score=52.44 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 198 ELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 198 e~valvG~NGsGKSTLlk~l~G~~ 221 (240)
-+++|+|+.|+|||||++.|++-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999864
No 463
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.58 E-value=0.00095 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 464
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.57 E-value=0.001 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.9
Q ss_pred CEEEEECCCCchHHHHHHHHhCC
Q psy310 56 ELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 56 e~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
=.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 465
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.57 E-value=0.00079 Score=58.79 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhC
Q psy310 197 GELTAIMGPSGAGKSTLLNILTG 219 (240)
Q Consensus 197 Ge~valvG~NGsGKSTLlk~l~G 219 (240)
+..+.|.|++|+|||||+++|++
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999999999
No 466
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.57 E-value=0.0012 Score=55.39 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.|+|||.+|+|||||++.|.|.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999985
No 467
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.56 E-value=0.0014 Score=53.36 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
++..+.|.||.|+|||||++.|+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999874
No 468
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.56 E-value=0.0023 Score=50.67 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=0.0
Q ss_pred EEEEECCCCchHHHHHHHHhCCC----CCCCcc----EEEECCc
Q psy310 57 LTAIMGPSGAGKSTLLNILTGYK----TSGTEG----SITINGH 92 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~~----~~~~~G----~V~v~g~ 92 (240)
.++|+|++|+|||||++.+.+-. ..+..+ .+.+++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
No 469
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.56 E-value=0.0011 Score=52.23 Aligned_cols=22 Identities=45% Similarity=0.539 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.|.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999985
No 470
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.56 E-value=0.0011 Score=51.33 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 471
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.56 E-value=0.00082 Score=58.02 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=25.2
Q ss_pred eEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310 192 GRLRSGELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 192 l~I~~Ge~valvG~NGsGKSTLlk~l~G~ 220 (240)
+.+..+..+.|.|++|+|||||+++|++.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34567788999999999999999999974
No 472
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.56 E-value=0.0011 Score=58.56 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=25.3
Q ss_pred EEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310 51 RLRSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
-+++|+++.|.||+|||||||+..|+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999998887
No 473
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.55 E-value=0.0019 Score=57.76 Aligned_cols=37 Identities=32% Similarity=0.415 Sum_probs=28.1
Q ss_pred CCEEEEECCCCchHHHHHHHHhCCC----------CCCCccEEEECC
Q psy310 55 GELTAIMGPSGAGKSTLLNILTGYK----------TSGTEGSITING 91 (240)
Q Consensus 55 Ge~vgLvG~NGSGKSTLLr~L~G~~----------~~~~~G~V~v~g 91 (240)
|-.++|||.+|+|||||+++|.+.. ..|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 4578999999999999999999831 123457766654
No 474
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.55 E-value=0.001 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 475
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.54 E-value=0.0011 Score=51.92 Aligned_cols=22 Identities=45% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999984
No 476
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.54 E-value=0.0011 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.9
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGYK 79 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~~ 79 (240)
.++|+|+.|+|||||++.|.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999853
No 477
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.53 E-value=0.0013 Score=51.97 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 198 ELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 198 e~valvG~NGsGKSTLlk~l~G~~ 221 (240)
-+++|+|+.|+|||||++.|++-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999864
No 478
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.53 E-value=0.0013 Score=51.68 Aligned_cols=24 Identities=46% Similarity=0.527 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q psy310 198 ELTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 198 e~valvG~NGsGKSTLlk~l~G~~ 221 (240)
-+++|+|+.|+|||||++.|++-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999999864
No 479
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.52 E-value=0.0013 Score=55.06 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCchHHHHHHHHhC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
++-+++|+|+.||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 480
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.52 E-value=0.0013 Score=55.57 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCchHHHHHHHHhC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
++.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 481
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.52 E-value=0.0012 Score=51.96 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999884
No 482
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.52 E-value=0.00093 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.379 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q psy310 198 ELTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 198 e~valvG~NGsGKSTLlk~l~G~ 220 (240)
=+|+|+|++|+|||||++.+++-
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999863
No 483
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.52 E-value=0.0011 Score=56.74 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.2
Q ss_pred CEEEEECCCCchHHHHHHHHhC
Q psy310 56 ELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 56 e~vgLvG~NGSGKSTLLr~L~G 77 (240)
-+++|.|+.||||||+++.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999984
No 484
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.51 E-value=0.0012 Score=50.43 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.5
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q psy310 57 LTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G 77 (240)
.++|+|+.|+|||||++.|.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 485
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.51 E-value=0.0014 Score=54.07 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 486
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.51 E-value=0.0014 Score=50.73 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 487
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.51 E-value=0.0027 Score=51.11 Aligned_cols=36 Identities=22% Similarity=0.099 Sum_probs=28.6
Q ss_pred CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G 77 (240)
++..++..-+.+ .|.-++|.|+||+|||||+..|..
T Consensus 3 ~~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 3 AKQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp -CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ccEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345666666665 688999999999999999988865
No 488
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.50 E-value=0.0013 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 489
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.48 E-value=0.0013 Score=51.50 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q psy310 57 LTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G 77 (240)
.++|+|+.|+|||||++.|.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999987
No 490
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.48 E-value=0.0013 Score=56.55 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHh
Q psy310 195 RSGELTAIMGPSGAGKSTLLNILT 218 (240)
Q Consensus 195 ~~Ge~valvG~NGsGKSTLlk~l~ 218 (240)
.++-.+.|+|++||||||+.+.|+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346689999999999999999996
No 491
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.47 E-value=0.00086 Score=52.39 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=20.1
Q ss_pred CEEEEECCCCchHHHHHHHHhC
Q psy310 56 ELTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 56 e~vgLvG~NGSGKSTLLr~L~G 77 (240)
=.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999985
No 492
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.46 E-value=0.0014 Score=51.93 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q psy310 57 LTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
.++|+|+.|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 493
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.46 E-value=0.0013 Score=52.71 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy310 199 LTAIMGPSGAGKSTLLNILTGY 220 (240)
Q Consensus 199 ~valvG~NGsGKSTLlk~l~G~ 220 (240)
+|+|+|+.|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999875
No 494
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.46 E-value=0.0016 Score=54.60 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q psy310 199 LTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 199 ~valvG~NGsGKSTLlk~l~G~~ 221 (240)
+|+|+|+.|+|||||++.|+|-.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 69999999999999999999963
No 495
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.46 E-value=0.0014 Score=50.36 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.6
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q psy310 57 LTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G 77 (240)
.++|+|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999976
No 496
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.45 E-value=0.0014 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.4
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q psy310 57 LTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G 77 (240)
.++|+|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999976
No 497
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.45 E-value=0.0015 Score=55.73 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
++..+.|.||+|+|||||+++|++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5778999999999999999999985
No 498
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.45 E-value=0.0015 Score=53.46 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCchHHHHHHHHhCC
Q psy310 54 SGELTAIMGPSGAGKSTLLNILTGY 78 (240)
Q Consensus 54 ~Ge~vgLvG~NGSGKSTLLr~L~G~ 78 (240)
+|-++.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
No 499
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.44 E-value=0.0015 Score=51.68 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q psy310 199 LTAIMGPSGAGKSTLLNILTGYK 221 (240)
Q Consensus 199 ~valvG~NGsGKSTLlk~l~G~~ 221 (240)
+|+|+|+.|+|||||++.|++-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 69999999999999999998853
No 500
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.43 E-value=0.0015 Score=50.94 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=0.0
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q psy310 57 LTAIMGPSGAGKSTLLNILTG 77 (240)
Q Consensus 57 ~vgLvG~NGSGKSTLLr~L~G 77 (240)
.++|+|+.|+|||||++.|.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Done!