RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy310
(240 letters)
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 124 bits (315), Expect = 1e-35
Identities = 47/89 (52%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITINGHERNLSQFR 100
K +LK+VSG+ + GELTAIMGPSGAGKSTLLN L G +T G G + ING + FR
Sbjct: 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81
Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALK 129
K+ Y+ QD+ LH LTV E + A L+
Sbjct: 82 KIIGYVPQDDILHPTLTVRETLMFAAKLR 110
Score = 73.7 bits (182), Expect = 4e-16
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222
K +LK+VSG+ + GELTAIMGPSGAGKSTLLN L G +
Sbjct: 20 SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT 60
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 119 bits (301), Expect = 5e-31
Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE--GSITINGHERNLSQ 98
K +LK+VSG + GEL A+MG SGAGK+TL+N L G + GS+ +NG + +
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
R +S Y+ QD+ LTV E + L++ + +TK +++ V
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERV 141
Score = 69.7 bits (171), Expect = 1e-13
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
K +LK+VSG + GEL A+MG SGAGK+TL+N L
Sbjct: 33 RERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR 74
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 94.6 bits (236), Expect = 9e-24
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG--TEGSITINGHERNLS 97
IL VS + SG++ AI+G SG+GK+TLL+ ++G G T G I NG R
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 98 QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
QF+K Y+ QD+ L LTV E + L+L + + A RK V
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV 123
Score = 56.1 bits (136), Expect = 1e-09
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
IL VS + SG++ AI+G SG+GK+TLL+ ++G
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG 55
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 90.4 bits (225), Expect = 1e-21
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLS 97
+KT L VS + GE+ ++GP+GAGK+TLL IL G T G I + G++ + +
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL-LKPTSGEILVLGYDVVKEPA 74
Query: 98 QFRKLSCYIMQDNQLHANLTVEEAMNVATALK-LGKDLTKAARKDVVRTL 146
+ R+ Y+ Q+ L+ LTV E + L L K+ + ++++
Sbjct: 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF 124
Score = 61.9 bits (151), Expect = 2e-11
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+KT L VS + GE+ ++GP+GAGK+TLL IL G
Sbjct: 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG 53
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 87.7 bits (218), Expect = 2e-21
Identities = 36/83 (43%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-EGSITINGHERNLSQF 99
++ +L ++SG ++ G LTA+MG SGAGK+TLL++L G KT+G G I ING + + F
Sbjct: 19 KRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN-F 77
Query: 100 RKLSCYIMQDNQLHANLTVEEAM 122
++ + Y+ Q + NLTV EA+
Sbjct: 78 QRSTGYVEQQDVHSPNLTVREAL 100
Score = 58.4 bits (142), Expect = 1e-10
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222
++ +L ++SG ++ G LTA+MG SGAGK+TLL++L G K
Sbjct: 19 KRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT 58
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 85.6 bits (213), Expect = 3e-20
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------E 93
+ LK V+ + +GE AI+GPSG+GKSTLLN+L G T G + ING E
Sbjct: 16 EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL-DKPTSGEVLINGKDLTKLSE 74
Query: 94 RNLSQFRKLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV 142
+ L++ R+ ++ Q+ L +LTV E NV L + ++
Sbjct: 75 KELAKLRRKKIGFVFQNFNLLPDLTVLE--NVELPLLIAGKSAGRRKRAA 122
Score = 59.8 bits (146), Expect = 6e-11
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ LK V+ + +GE AI+GPSG+GKSTLLN+L G
Sbjct: 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 82.5 bits (205), Expect = 3e-19
Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 36 NCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--- 92
+ LK VS + GE AI+GPSG+GKSTLLNIL G T G + ++G
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-TSGEVRVDGTDIS 69
Query: 93 ---ERNLSQFR--KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF 147
E+ L+ FR + ++ Q L +LT E NV L L + K R++ L
Sbjct: 70 KLSEKELAAFRRRHIG-FVFQSFNLLPDLTALE--NVELPLLLAG-VPKKERRERAEELL 125
Score = 57.1 bits (139), Expect = 5e-10
Identities = 25/43 (58%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 178 YNRIHEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
Y EK LK VS + GE AI+GPSG+GKSTLLNIL G
Sbjct: 10 YGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG 52
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 85.2 bits (211), Expect = 6e-19
Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 15/145 (10%)
Query: 12 TNNTNNTNNTNNTNNTNTNTNTN-----NNC-----EPNEKTILKSVSGRLRSGELTAIM 61
T+ T+ +++ N+ + + + N + ++ IL +V G ++ G LTA+M
Sbjct: 736 TDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALM 795
Query: 62 GPSGAGKSTLLNILTGYKTSG--TEGSITINGHERNLSQFRKLSCYIMQDNQLH-ANLTV 118
G SGAGK+TLLN+L T+G T G +NG + S F++ Y+ Q LH TV
Sbjct: 796 GASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQ-QDLHLPTSTV 853
Query: 119 EEAMNVATALKLGKDLTKAARKDVV 143
E++ + L+ K ++K+ + + V
Sbjct: 854 RESLRFSAYLRQPKSVSKSEKMEYV 878
Score = 60.5 bits (147), Expect = 1e-10
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 14/120 (11%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITINGHE 93
+ ILK + G ++ GELT ++G G+G STLL + T G EG IT +G
Sbjct: 70 DTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS-NTDGFHIGVEGVITYDGIT 128
Query: 94 RN--LSQFRKLSCYIMQDNQLH-ANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRS 150
+R Y + +H +LTV E ++ A K T R D V Y
Sbjct: 129 PEEIKKHYRGDVVYNAE-TDVHFPHLTVGETLDFAARCK-----TPQNRPDGVSREEYAK 182
Score = 53.2 bits (128), Expect = 3e-08
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++ IL +V G ++ G LTA+MG SGAGK+TLLN+L
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE 811
Score = 46.6 bits (111), Expect = 6e-06
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
ILK + G ++ GELT ++G G+G STLL +
Sbjct: 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS 109
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 77.8 bits (193), Expect = 6e-18
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQ 98
+KT L +S + GE+ ++GP+GAGK+TL+ I+ G G I + G + + +
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL-LKPDSGEIKVLGKDIKKEPEE 70
Query: 99 FRKLSCYIMQDNQLHANLTVEE 120
++ Y+ ++ L+ NLTV E
Sbjct: 71 VKRRIGYLPEEPSLYENLTVRE 92
Score = 52.4 bits (127), Expect = 1e-08
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+KT L +S + GE+ ++GP+GAGK+TL+ I+ G
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL 49
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 78.0 bits (193), Expect = 7e-18
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-----HER 94
+KT+L VS + +GE+ A++GPSG+GKSTLL + G + GSI I+G E
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGEDLTDLED 69
Query: 95 NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 128
L R+ + QD L +LTV E N+A L
Sbjct: 70 ELPPLRRRIGMVFQDFALFPHLTVLE--NIALGL 101
Score = 54.9 bits (133), Expect = 2e-09
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
R +KT+L VS + +GE+ A++GPSG+GKSTLL + G
Sbjct: 9 RYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG 48
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 78.3 bits (194), Expect = 1e-17
Identities = 37/126 (29%), Positives = 50/126 (39%), Gaps = 18/126 (14%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-------- 91
L +S + GE A++GPSG GK+TLL ++ G + G I I+G
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-DSGEILIDGRDVTGVPP 69
Query: 92 HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD 151
RN+ + QD L +LTV E N+A LKL R V L
Sbjct: 70 ERRNIG-------MVFQDYALFPHLTVAE--NIAFGLKLRGVPKAEIRARVRELLELVGL 120
Query: 152 TNHAQR 157
R
Sbjct: 121 EGLLNR 126
Score = 52.9 bits (128), Expect = 2e-08
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L +S + GE A++GPSG GK+TLL ++ G
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG 48
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 77.7 bits (192), Expect = 9e-17
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 18/111 (16%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--------HE 93
T + +S ++ GE ++GPSG GK+TLL ++ G++ + G I ++G +
Sbjct: 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP-SSGEILLDGEDITDVPPEK 76
Query: 94 RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
R + + Q L ++TVEE NVA LK+ K L KA K V
Sbjct: 77 RPI-------GMVFQSYALFPHMTVEE--NVAFGLKVRKKLKKAEIKARVE 118
Score = 50.7 bits (122), Expect = 2e-07
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ T + +S ++ GE ++GPSG GK+TLL ++ G
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 74.8 bits (185), Expect = 2e-16
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNLS 97
+ L +S ++ GE I+GP+G+GKSTLL +L G T G + ++G + +L
Sbjct: 13 ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-TSGEVLVDGKDLTKLSLK 71
Query: 98 QFRKLSCYIMQ--DNQLHANLTVEE 120
+ R+ + Q D+Q TVEE
Sbjct: 72 ELRRKVGLVFQNPDDQF-FGPTVEE 95
Score = 57.5 bits (140), Expect = 4e-10
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
Y + L +S ++ GE I+GP+G+GKSTLL +L G
Sbjct: 9 YPD-GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 77.6 bits (191), Expect = 2e-16
Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG-TEGSITINGHERNLSQFRKL 102
+L+ V+G R G LTA+MG SGAGK+TL+++L G KT G EG I I+G + F ++
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 954
Query: 103 SCYIMQDNQLHA-NLTVEEAMNVATALKLGKDLTK 136
S Y Q N +H+ +TV E++ + L+L K+++K
Sbjct: 955 SGYCEQ-NDIHSPQVTVRESLIYSAFLRLPKEVSK 988
Score = 59.5 bits (144), Expect = 3e-10
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITINGHERNLSQFR 100
TILK SG ++ +T ++GP +GK+TLL L G + G IT NG+ N R
Sbjct: 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPR 238
Query: 101 KLSCYIMQDNQLHAN-LTVEEAMN 123
K S YI Q N +H +TV+E ++
Sbjct: 239 KTSAYISQ-NDVHVGVMTVKETLD 261
Score = 50.6 bits (121), Expect = 3e-07
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221
+L+ V+G R G LTA+MG SGAGK+TL+++L G K
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 930
Score = 39.8 bits (93), Expect = 0.001
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
TILK SG ++ +T ++GP +GK+TLL L G
Sbjct: 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAG 213
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 74.0 bits (183), Expect = 4e-16
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKL 102
IL VS + GE+ A++G +GAGK+TLL + G GSI +G + L +
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL-LPPRSGSIRFDGRDITGLPPHERA 73
Query: 103 S---CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC- 158
Y+ + ++ LTVEE N+ + + AR + V LF R Q
Sbjct: 74 RAGIGYVPEGRRIFPELTVEE--NLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAG 131
Query: 159 FLSG 162
LSG
Sbjct: 132 TLSG 135
Score = 49.7 bits (120), Expect = 2e-07
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
Y + IL VS + GE+ A++G +GAGK+TLL + G
Sbjct: 10 YGKSQ---ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG 48
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 74.1 bits (183), Expect = 5e-16
Identities = 46/127 (36%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--- 95
PN K LK VS + GE A++GPSGAGKSTLL L G T GS+ I+G + N
Sbjct: 11 PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-PTSGSVLIDGTDINKLK 69
Query: 96 ---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT 152
L Q R+ I Q L L+V E NV + + R+ R+LF
Sbjct: 70 GKALRQLRRQIGMIFQQFNLIERLSVLE--NVLSG--------RLGRRSTWRSLFGLFPK 119
Query: 153 NHAQRCF 159
QR
Sbjct: 120 EEKQRAL 126
Score = 51.0 bits (123), Expect = 9e-08
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ K LK VS + GE A++GPSGAGKSTLL L G
Sbjct: 12 NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG 49
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 71.9 bits (177), Expect = 7e-16
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNL 96
+T L +VS L++GE+ A++GP+G+GKSTLL + G T G I I+G + L
Sbjct: 10 GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKDIAKLPL 68
Query: 97 SQFRKLSCYIMQ 108
+ R+ Y+ Q
Sbjct: 69 EELRRRIGYVPQ 80
Score = 58.4 bits (142), Expect = 8e-11
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
R +T L +VS L++GE+ A++GP+G+GKSTLL + G
Sbjct: 8 RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG 47
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 71.6 bits (177), Expect = 1e-15
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ER 94
K +LK VS ++ GE AI+GPSG+GKSTLL +L T G I I+G +
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY-DPTSGEILIDGVDLRDL 69
Query: 95 NLSQFRKLSCYIMQDNQLHANLTVEE 120
+L RK Y+ QD L + T+ E
Sbjct: 70 DLESLRKNIAYVPQDPFLF-SGTIRE 94
Score = 55.1 bits (134), Expect = 1e-09
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
K +LK VS ++ GE AI+GPSG+GKSTLL +L
Sbjct: 14 PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 72.4 bits (178), Expect = 2e-15
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 55 GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ-FRKLSCYIMQDNQLH 113
GE+ AI+GPSGAGKSTLLN++ G++T + G I ING + S + + Q+N L
Sbjct: 25 GEIVAILGPSGAGKSTLLNLIAGFETPAS-GEILINGVDHTASPPAERPVSMLFQENNLF 83
Query: 114 ANLTVEEAMNVATALKLGKDLTKAARKDVV 143
A+LTV + N+ L G L R+ V
Sbjct: 84 AHLTVAQ--NIGLGLSPGLKLNAEQREKVE 111
Score = 48.5 bits (116), Expect = 6e-07
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 197 GELTAIMGPSGAGKSTLLNILTGY 220
GE+ AI+GPSGAGKSTLLN++ G+
Sbjct: 25 GEIVAILGPSGAGKSTLLNLIAGF 48
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 72.1 bits (178), Expect = 4e-15
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
+T+L VS LR GE+ AI+GP+GAGKSTLL L+G S G + +NG R L+ +
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE-LSPDSGEVRLNG--RPLADW 69
Score = 66.3 bits (163), Expect = 5e-13
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
R+ +T+L VS LR GE+ AI+GP+GAGKSTLL L+G
Sbjct: 11 RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 71.4 bits (176), Expect = 4e-15
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ER 94
+T+LK V +R GE+ AI+GPSG+GKSTLL ++ G G + I+G E
Sbjct: 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-DSGEVLIDGEDISGLSEA 70
Query: 95 NLSQFRKLSCYIMQDNQLHANLTVEEAMNVA 125
L + R+ + Q L +LTV E NVA
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFE--NVA 99
Score = 56.0 bits (136), Expect = 1e-09
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+T+LK V +R GE+ AI+GPSG+GKSTLL ++ G
Sbjct: 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG 48
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 73.4 bits (180), Expect = 5e-15
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLSQF 99
E+TIL V+G GE+ A++GPSG+GKSTLLN L G + + G+I N + Q
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN-RKPTKQI 138
Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 136
K + ++ QD+ L+ +LTV E + + L+L K LTK
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTK 175
Score = 53.3 bits (128), Expect = 3e-08
Identities = 23/39 (58%), Positives = 29/39 (74%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
I E+TIL V+G GE+ A++GPSG+GKSTLLN L G
Sbjct: 78 IQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 70.7 bits (174), Expect = 5e-15
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------RNLS 97
L VS +R GE + GPSGAGK+TLL +L G T + G + I G + R L
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQVRIAGEDVNRLRGRQLP 75
Query: 98 QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
R+ + QD +L + TV E NVA L++ + ++ V L
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYE--NVALPLEVRGKKEREIQRRVGAAL 122
Score = 43.8 bits (104), Expect = 2e-05
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
L VS +R GE + GPSGAGK+TLL +L G
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 70.6 bits (174), Expect = 7e-15
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RN 95
+ K + +S + GE+ ++G +GAGK+T L +LTG + T G+ ING+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG-ELRPTSGTAYINGYSIRTD 69
Query: 96 LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 129
R+ Y Q + L LTV E + LK
Sbjct: 70 RKAARQSLGYCPQFDALFDELTVREHLRFYARLK 103
Score = 46.3 bits (111), Expect = 3e-06
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
K + +S + GE+ ++G +GAGK+T L +LTG
Sbjct: 14 TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG 50
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 69.1 bits (170), Expect = 2e-14
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQF 99
K L VS L G + ++GP+GAGK+TL+ IL T + G+I I+G + + +
Sbjct: 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL-TPPSSGTIRIDGQDVLKQPQKL 70
Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALK 129
R+ Y+ Q+ ++ N TV E ++ LK
Sbjct: 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLK 100
Score = 43.3 bits (103), Expect = 3e-05
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
R +K L VS L G + ++GP+GAGK+TL+ IL
Sbjct: 9 RYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILAT 47
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 69.2 bits (170), Expect = 3e-14
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----- 93
PN K LK+++ + GE AI+GPSGAGKSTLL + + GSI + G +
Sbjct: 12 PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-SSGSILLEGTDITKLR 70
Query: 94 -RNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 124
+ L + R+ I Q L LTV E NV
Sbjct: 71 GKKLRKLRRRIGMIFQHYNLIERLTVLE--NV 100
Score = 47.3 bits (113), Expect = 2e-06
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
K LK+++ + GE AI+GPSGAGKSTLL
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLL 45
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 69.1 bits (170), Expect = 3e-14
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING----HERN 95
+K +LK +S + GE+ I+GPSG+GKSTLL L G + GSIT++G +++
Sbjct: 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-DSGSITVDGEDVGDKKD 71
Query: 96 LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA-ARK 140
+ + R+ + Q L +LTV E NV A K L+KA AR+
Sbjct: 72 ILKLRRKVGMVFQQFNLFPHLTVLE--NVTLAPVKVKKLSKAEARE 115
Score = 51.0 bits (123), Expect = 8e-08
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+K +LK +S + GE+ I+GPSG+GKSTLL L G
Sbjct: 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 68.7 bits (168), Expect = 4e-14
Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 6/90 (6%)
Query: 55 GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF--RKLSCYIMQDNQL 112
GE+TAI+GPSG+GKSTLLN++ G++T G + ING + + R +S + Q+N L
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETP-QSGRVLINGVDVTAAPPADRPVS-MLFQENNL 81
Query: 113 HANLTVEEAMNVATALKLGKDLTKAARKDV 142
A+LTVE+ NV L G LT R+ +
Sbjct: 82 FAHLTVEQ--NVGLGLSPGLKLTAEDRQAI 109
Score = 46.3 bits (110), Expect = 3e-06
Identities = 17/24 (70%), Positives = 23/24 (95%)
Query: 197 GELTAIMGPSGAGKSTLLNILTGY 220
GE+TAI+GPSG+GKSTLLN++ G+
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGF 47
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 67.2 bits (165), Expect = 6e-14
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNL 96
E +L++VS + GE AI+GPSG+GKSTL ++ G T G + ++G + +
Sbjct: 13 AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGADISQWDP 71
Query: 97 SQFRKLSCYIMQDNQL 112
++ Y+ QD++L
Sbjct: 72 NELGDHVGYLPQDDEL 87
Score = 51.8 bits (125), Expect = 2e-08
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E +L++VS + GE AI+GPSG+GKSTL ++ G
Sbjct: 14 EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILG 50
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 68.3 bits (168), Expect = 6e-14
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
T L+ +S + GE A++GPSG GKSTLL I+ G + T G + ++G
Sbjct: 16 AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-TSGEVLVDGEPVTGPGPD 74
Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF 147
+ Y+ Q + L LTV + NVA L+L + + KA ++ L
Sbjct: 75 RG--YVFQQDALLPWLTVLD--NVALGLEL-QGVPKAEARERAEELL 116
Score = 54.0 bits (131), Expect = 6e-09
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
T L+ +S + GE A++GPSG GKSTLL I+ G
Sbjct: 16 AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG 52
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 68.4 bits (168), Expect = 6e-14
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
+L+ ++ + GE AI+GPSG GKSTLL ++ G T G + ++G
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL-EKPTSGEVLLDGRPVTGPG- 71
Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF 147
+ Y+ Q++ L LTV + NVA L+L + +KA ++ + L
Sbjct: 72 PDIG-YVFQEDALLPWLTVLD--NVALGLEL-RGKSKAEARERAKELL 115
Score = 53.7 bits (130), Expect = 1e-08
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+L+ ++ + GE AI+GPSG GKSTLL ++ G
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 66.9 bits (164), Expect = 2e-13
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
IL +S L +GE+ A+ G +GAGK+TL IL G + GSI +NG + RK
Sbjct: 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-SSGSILLNGKPIKAKERRK 71
Query: 102 LSCYIMQD 109
Y+MQD
Sbjct: 72 SIGYVMQD 79
Score = 53.0 bits (128), Expect = 1e-08
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
IL +S L +GE+ A+ G +GAGK+TL IL G
Sbjct: 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG 48
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 67.6 bits (166), Expect = 2e-13
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ER 94
++ IL V + GE+ AI+G SG+GKSTLL ++ G +G I I+G E
Sbjct: 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP-DKGEILIDGEDIPQLSEE 78
Query: 95 NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
L + RK + Q L ++LTV E NVA L+ L ++ +++V
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFE--NVAFPLREHTKLPESLIRELVL 126
Score = 54.9 bits (133), Expect = 5e-09
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ ++ IL V + GE+ AI+G SG+GKSTLL ++ G
Sbjct: 14 VTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILG 56
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 67.7 bits (166), Expect = 2e-13
Identities = 41/115 (35%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----- 93
P LK V+ + GE+ AI+GPSGAGKSTLL L G T G I NG +
Sbjct: 14 PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-TSGEILFNGVQITKLK 72
Query: 94 -RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF 147
+ L + R+ I Q L L+V E NV LG+ R+LF
Sbjct: 73 GKELRKLRRDIGMIFQQFNLVPRLSVLE--NV----LLGRL----GYTSTWRSLF 117
Score = 48.4 bits (116), Expect = 7e-07
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
LK V+ + GE+ AI+GPSGAGKSTLL L G
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 68.4 bits (168), Expect = 2e-13
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------- 92
+LK V+ + GE ++GPSG GKSTLL ++ G T G I I+G
Sbjct: 14 GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL-EEPTSGEILIDGRDVTDLPP 72
Query: 93 -ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG---KDLTKAARKDVVRTL 146
+R ++ + Q+ L+ ++TV E N+A LKL K K+V + L
Sbjct: 73 EKRGIA-------MVFQNYALYPHMTVYE--NIAFGLKLRGVPKAEIDKRVKEVAKLL 121
Score = 53.4 bits (129), Expect = 2e-08
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK V+ + GE ++GPSG GKSTLL ++ G
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 67.3 bits (165), Expect = 2e-13
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----RN 95
L +VS + GE I+G SG+GKSTL +L G + GSI ++G +
Sbjct: 18 FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL-EKPSSGSILLDGKPLAPKKR 76
Query: 96 LSQFRKLSCYIMQD--NQLHANLTVEEAMNVA 125
F + + QD + L+ TV ++
Sbjct: 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP 108
Score = 50.3 bits (121), Expect = 1e-07
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
L +VS + GE I+G SG+GKSTL +L G
Sbjct: 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL 56
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 68.4 bits (168), Expect = 2e-13
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-----RNLSQF 99
+ VS LR GE ++G SG+GKSTL IL G + GSI +G + L +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGELRRL 365
Query: 100 RKLSCYIMQD--NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
R+ + QD + L+ +TV + +A L++ + A R+ V L
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGD--ILAEPLRIHGGGSGAERRARVAEL 412
Score = 58.7 bits (143), Expect = 4e-10
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG---TEGSITINGH----- 92
++ VS + GE+ I+G SG+GKSTL L G G T G + ++G
Sbjct: 21 RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80
Query: 93 -ERNLSQFR-KLSCYIMQDNQLHAN--LTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
ER + + R K I QD N +T+ + + A L GK ARK V L
Sbjct: 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH-GKGSRAEARKRAVELL 137
Score = 49.5 bits (119), Expect = 5e-07
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
E + VS LR GE ++G SG+GKSTL IL G
Sbjct: 300 ERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Score = 46.0 bits (110), Expect = 7e-06
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
++ VS + GE+ I+G SG+GKSTL L G
Sbjct: 21 RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGL 58
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 67.4 bits (165), Expect = 3e-13
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-----HERNLSQF 99
L +S ++SGEL A++GPSGAGKSTLL I+ G +T G I +NG +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-DAGRIRLNGRVLFDVSNLAVRD 76
Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD-LTKAARKDVVRTL 146
RK+ ++ Q L ++TV A N+A LK+ K+ ++A + V L
Sbjct: 77 RKVG-FVFQHYALFPHMTV--ADNIAFGLKVRKERPSEAEIRARVEEL 121
Score = 49.3 bits (118), Expect = 5e-07
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L +S ++SGEL A++GPSGAGKSTLL I+ G
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAG 50
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 65.4 bits (160), Expect = 7e-13
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING----HER 94
P K LK VS + GE ++GP+G+GKSTLL +L G T G + ++G E+
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP-TSGEVLVDGLDTSSEK 72
Query: 95 NLSQFRKLSCYIMQ--DNQLHANLTVEE 120
+L + R+ + Q D+QL TVE+
Sbjct: 73 SLLELRQKVGLVFQNPDDQL-FGPTVED 99
Score = 49.9 bits (120), Expect = 2e-07
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
K LK VS + GE ++GP+G+GKSTLL +L G
Sbjct: 16 RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG 52
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 66.9 bits (164), Expect = 8e-13
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 16/102 (15%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--- 95
P++ +L+ +S + GE AI+G SG+GKSTLL +L G +G I ++G + N
Sbjct: 483 PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP-QQGRILLDGVDLNDID 541
Query: 96 LSQFRKLSCYIMQDNQL------------HANLTVEEAMNVA 125
L+ R+ Y++QD L + T EE + A
Sbjct: 542 LASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAA 583
Score = 46.1 bits (110), Expect = 7e-06
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+ +L+ +S + GE AI+G SG+GKSTLL +L G
Sbjct: 484 DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 65.4 bits (160), Expect = 8e-13
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--HERNLSQFRKLSCYIMQ 108
+ GE AI+GPSGAGKSTLLN++ G+ T GS+T+NG H R +S + Q
Sbjct: 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTP-ASGSLTLNGQDHTTTPPSRRPVS-MLFQ 78
Query: 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
+N L ++LTV + N+ L G L A R+
Sbjct: 79 ENNLFSHLTVAQ--NIGLGLNPGLKLNAAQRE 108
Score = 46.1 bits (110), Expect = 4e-06
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 193 RLRSGELTAIMGPSGAGKSTLLNILTGY 220
+ GE AI+GPSGAGKSTLLN++ G+
Sbjct: 21 TVERGERVAILGPSGAGKSTLLNLIAGF 48
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 64.6 bits (158), Expect = 9e-13
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITINGHE--RN 95
++ ILK SG ++ GE+ ++G G+G STLL L EG I NG
Sbjct: 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF 77
Query: 96 LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 129
++ Y+ +++ LTV E ++ A K
Sbjct: 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK 111
Score = 48.0 bits (115), Expect = 8e-07
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ ILK SG ++ GE+ ++G G+G STLL L
Sbjct: 16 GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN 55
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 66.5 bits (163), Expect = 1e-12
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLS 97
P+ K L ++ +++G+LTA++G SGAGKSTLLN+L G+ + T+G I +NG + R+LS
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF-LAPTQGEIRVNGIDLRDLS 389
Query: 98 --QFRKLSCYIMQDNQLHAN 115
+RK ++ Q+ L A
Sbjct: 390 PEAWRKQISWVSQNPYLFAG 409
Score = 47.6 bits (114), Expect = 2e-06
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
K L ++ +++G+LTA++G SGAGKSTLLN+L G
Sbjct: 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLG 369
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 65.3 bits (160), Expect = 1e-12
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNL 96
K IL +S + GE+T I+GP+G+GKSTLL L G G + ++G +
Sbjct: 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-SGEVLLDGKDIASLSP 71
Query: 97 SQFRKLSCYIMQDNQLHANLTVEEA 121
+ K Y+ Q LTV E
Sbjct: 72 KELAKKLAYVPQSPSAPFGLTVYEL 96
Score = 54.5 bits (132), Expect = 7e-09
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-------ILRQLWLLEYSHK 234
K IL +S + GE+T I+GP+G+GKSTLL L G +L + S K
Sbjct: 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK 72
Query: 235 DLA 237
+LA
Sbjct: 73 ELA 75
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 64.5 bits (158), Expect = 1e-12
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
+L+ VS ++ GE AI+GP+GAGKSTLL + G T GSI + G + L +
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP-TSGSIRVFG--KPLEKE 66
Query: 100 RKLSCYIMQDNQLHAN----LTVEE--AMNVATALKLGKDLTKAARKDVVRTLFYRSDTN 153
RK Y+ Q + + ++V + M + L + L+KA + V L +
Sbjct: 67 RKRIGYVPQ--RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE 124
Query: 154 HAQRCF--LSG 162
A R LSG
Sbjct: 125 LADRQIGELSG 135
Score = 52.9 bits (128), Expect = 1e-08
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+L+ VS ++ GE AI+GP+GAGKSTLL + G
Sbjct: 8 SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG 47
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 64.5 bits (158), Expect = 1e-12
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----- 93
P + L+ VS + GE + GPSGAGKSTLL ++ G + T G I +NGH+
Sbjct: 12 PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG-EERPTRGKILVNGHDLSRLK 70
Query: 94 -RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
R + R+ + QD +L + TV E NVA L++ + R+ V L
Sbjct: 71 GREIPFLRRQIGVVFQDFRLLPDRTVYE--NVALPLRVIGKPPREIRRRVSEVL 122
Score = 42.2 bits (100), Expect = 6e-05
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ L+ VS + GE + GPSGAGKSTLL ++ G
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG 50
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 64.5 bits (157), Expect = 1e-12
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 55 GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--HERNLSQFRKLSCYIMQDNQL 112
GE+ AIMGPSGAGKSTLLN++ G+ GSI +N H R +S + Q+N L
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP-ASGSIKVNDQSHTGLAPYQRPVS-MLFQENNL 81
Query: 113 HANLTVEEAMNVATALKLGKDLTKAARKDVV 143
A+LTV + N+ L G L ++ VV
Sbjct: 82 FAHLTVRQ--NIGLGLHPGLKLNAEQQEKVV 110
Score = 45.6 bits (108), Expect = 5e-06
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 197 GELTAIMGPSGAGKSTLLNILTGYKILRQ--LWLLEYSHKDLA 237
GE+ AIMGPSGAGKSTLLN++ G+ + + + SH LA
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA 66
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 63.6 bits (156), Expect = 1e-12
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
+T+L +S + +GE+ I+GP+GAGKSTLL L G + G I ++G +
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL-LKPSSGEILLDGKDLASLSP 68
Query: 100 RKLSCYI 106
++L+ I
Sbjct: 69 KELARKI 75
Score = 57.4 bits (140), Expect = 2e-10
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+T+L +S + +GE+ I+GP+GAGKSTLL L G
Sbjct: 8 GYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL 48
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 64.1 bits (157), Expect = 1e-12
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL 96
C + + +S L +GE + GP+G+GK+TLL ++ G G+I ++G + +
Sbjct: 10 CVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-AAGTIKLDGGDIDD 68
Query: 97 SQFRKLSCYIMQDNQLHANLTVEE 120
+ Y+ N + LTV E
Sbjct: 69 PDVAEACHYLGHRNAMKPALTVAE 92
Score = 45.3 bits (108), Expect = 6e-06
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ + +S L +GE + GP+G+GK+TLL ++ G
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG 50
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 64.4 bits (158), Expect = 2e-12
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--------HER 94
L+ VS + GE+ A++G +GAGK+TLL + G G I +G HER
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL-VRPRSGRIIFDGEDITGLPPHER 75
Query: 95 NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK-DVVRTLF 147
R Y+ + ++ LTVEE N+ +D R + V LF
Sbjct: 76 ----ARLGIAYVPEGRRIFPRLTVEE--NLLLGAYARRDKEAQERDLEEVYELF 123
Score = 50.5 bits (122), Expect = 1e-07
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 176 AMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
A Y +I L+ VS + GE+ A++G +GAGK+TLL + G
Sbjct: 11 AGYGKIQ---ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG 51
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 64.0 bits (156), Expect = 2e-12
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ERNL 96
+ILK V ++ GE AI+GPSG+GKSTLL +L G + G + + G E
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-PSSGEVRLLGQPLHKLDEDAR 82
Query: 97 SQFRKLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
+ R ++ Q L NLT E NVA L+L + + +R L
Sbjct: 83 AALRARHVGFVFQSFHLIPNLTALE--NVALPLELRGESSADSRAGAKALL 131
Score = 50.9 bits (122), Expect = 9e-08
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E +ILK V ++ GE AI+GPSG+GKSTLL +L G
Sbjct: 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG 58
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the
SUF system, shown in E. coli to consist of six proteins
and believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 63.8 bits (156), Expect = 3e-12
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH 92
+K ILK V+ ++ GE+ AIMGP+G+GKSTL + G T G+I G
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQ 64
Score = 57.7 bits (140), Expect = 4e-10
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKI 222
+ +K ILK V+ ++ GE+ AIMGP+G+GKSTL + G Y++
Sbjct: 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV 54
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 64.8 bits (159), Expect = 3e-12
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLSQFRK-- 101
L VS +R GE+ A++G +GAGKSTL+ IL+G Y G I I+G S R
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPVAFSSPRDAL 81
Query: 102 ---LSCYIMQDNQLHANLTVEE 120
++ + Q+ L NL+V E
Sbjct: 82 AAGIAT-VHQELSLVPNLSVAE 102
Score = 52.1 bits (126), Expect = 7e-08
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L VS +R GE+ A++G +GAGKSTL+ IL+G
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSG 56
Score = 33.3 bits (77), Expect = 0.11
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
++ VS +R+GE+ I G GAG++ L L G + G I ++G +
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGA-RPASSGEILLDGKPVRIR 326
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 63.9 bits (156), Expect = 4e-12
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
+ +L VS LR GE+ AI+GP+GAGKSTLL L+G S G +T+NG L+ +
Sbjct: 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL-SPDSGEVTLNGV--PLNSWP 69
Score = 56.6 bits (137), Expect = 1e-09
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+ + +L VS LR GE+ AI+GP+GAGKSTLL L+G
Sbjct: 10 SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE 50
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 62.9 bits (154), Expect = 4e-12
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 14/106 (13%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL---NILTGYKTSGTEGSITING-----H 92
+ +LK + ++ GE+ I+GPSG+GKSTLL N+L G+I I+G
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP----DSGTIIIDGLKLTDD 67
Query: 93 ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 138
++N+++ R+ + Q L +LTV E N+ A K ++KA
Sbjct: 68 KKNINELRQKVGMVFQQFNLFPHLTVLE--NITLAPIKVKGMSKAE 111
Score = 46.0 bits (110), Expect = 3e-06
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
+ +LK + ++ GE+ I+GPSG+GKSTLL
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLL 43
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 64.2 bits (157), Expect = 5e-12
Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------RNL 96
T L VS + GE+ I+G SGAGKSTLL ++ + T GS+ ++G + L
Sbjct: 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP-TSGSVFVDGQDLTALSEAEL 78
Query: 97 SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
Q R+ I Q L ++ TV E NVA L+L + KA K V L
Sbjct: 79 RQLRQKIGMIFQHFNLLSSRTVFE--NVAFPLELAG-VPKAEIKQRVAEL 125
Score = 42.6 bits (101), Expect = 8e-05
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
T L VS + GE+ I+G SGAGKSTLL ++
Sbjct: 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL 54
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 63.0 bits (154), Expect = 5e-12
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING------H 92
+ T LK VS + GE+ I+G SGAGKSTL+ + G + T GS+ ++G
Sbjct: 15 GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-TSGSVLVDGTDLTLLS 73
Query: 93 ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
+ L + R+ I Q L ++ TV E NVA L++ + KA ++ V L
Sbjct: 74 GKELRKARRRIGMIFQHFNLLSSRTVFE--NVALPLEIAG-VPKAEIEERVLEL 124
Score = 41.0 bits (97), Expect = 2e-04
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ + T LK VS + GE+ I+G SGAGKSTL+ + G
Sbjct: 13 DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING 53
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 62.6 bits (153), Expect = 5e-12
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY-KTSGTEGSITING------H 92
+K IL ++ + G++ AI+G SG+GKSTLLNI+ K G + +NG +
Sbjct: 9 GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS--GQVYLNGQETPPLN 66
Query: 93 ERNLSQFR--KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
+ S+FR KL Y+ Q+ L N TVEE N+ LK K K R+ L
Sbjct: 67 SKKASKFRREKLG-YLFQNFALIENETVEE--NLDLGLKYKKLSKKEKREKKKEAL 119
Score = 51.8 bits (125), Expect = 3e-08
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+K IL ++ + G++ AI+G SG+GKSTLLNI+
Sbjct: 8 FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII 44
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 64.1 bits (157), Expect = 7e-12
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 14/87 (16%)
Query: 35 NNCE---PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSIT 88
+ E P+ KT+ ++ L +G+ A++GPSGAGK++LLN L G Y +GS+
Sbjct: 353 EDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-----QGSLK 407
Query: 89 INGHER---NLSQFRKLSCYIMQDNQL 112
ING E + +RK ++ Q+ QL
Sbjct: 408 INGIELRELDPESWRKHLSWVGQNPQL 434
Score = 48.7 bits (117), Expect = 1e-06
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
KT+ ++ L +G+ A++GPSGAGK++LLN L G+
Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF 399
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays
the role of a scaffold protein for assembly of
iron-sulfur clusters and delivery to target proteins;
SufS is a cysteine desulfurase which mobilizes the
sulfur atom from cysteine and provides it to the
cluster; SufE has no associated function yet.
Length = 200
Score = 62.2 bits (152), Expect = 7e-12
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH 92
K ILK V+ ++ GE+ A+MGP+G+GKSTL + G K TEG I G
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGE 64
Score = 56.8 bits (138), Expect = 6e-10
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKI 222
+ K ILK V+ ++ GE+ A+MGP+G+GKSTL + G Y++
Sbjct: 9 SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV 54
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 62.3 bits (152), Expect = 7e-12
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------ 93
K +L ++ + GE+ + GPSG+GK+TLL ++ G + S EGS+ + G E
Sbjct: 16 LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-SVQEGSLKVLGQELYGASE 74
Query: 94 RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
+ L Q R+ YI Q + L LT + NV AL+L +L+ ++ R
Sbjct: 75 KELVQLRRNIGYIFQAHNLLGFLTARQ--NVQMALELQPNLSYQEARERAR 123
Score = 37.3 bits (87), Expect = 0.003
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
K +L ++ + GE+ + GPSG+GK+TLL ++ G
Sbjct: 17 RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGG 53
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 62.5 bits (153), Expect = 8e-12
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------RNL 96
L VS ++ GE ++G SG+GKSTL + G T GSI +G + R
Sbjct: 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-TSGSIIFDGKDLLKLSRRLR 77
Query: 97 SQFRKLSCYIMQD--NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
RK + QD + L+ +T+ E +A L++ L+K + L
Sbjct: 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQ--IAEPLRIHGKLSKKEARKEAVLL 127
Score = 48.7 bits (117), Expect = 5e-07
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L VS ++ GE ++G SG+GKSTL + G
Sbjct: 13 TGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG 53
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 63.8 bits (156), Expect = 9e-12
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 15/102 (14%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE---R 94
P+ IL VS ++ GE AI+GPSG+GKSTLL +L G++T + GS+ +G +
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES-GSVFYDGQDLAGL 520
Query: 95 NLSQFRKLSCYIMQDNQL-----------HANLTVEEAMNVA 125
++ R+ ++Q+ +L A LT++EA A
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAA 562
Score = 51.1 bits (123), Expect = 2e-07
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
IL VS ++ GE AI+GPSG+GKSTLL +L G+
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF 502
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the
uptake of monosaccharides, such as pentoses (such as
xylose, arabinose, and ribose) and hexoses (such as
xylose, arabinose, and ribose), that cannot be broken
down to simple sugars by hydrolysis. Pentoses include
xylose, arabinose, and ribose. Important hexoses
include glucose, galactose, and fructose. In members of
the Carb_monos family, the single hydrophobic gene
product forms a homodimer while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter.
Length = 163
Score = 60.9 bits (149), Expect = 9e-12
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95
L VS +R GE+ A++G +GAGKSTL+ IL+G G I ++G E +
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL-YKPDSGEILVDGKEVS 65
Score = 51.3 bits (124), Expect = 3e-08
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
L VS +R GE+ A++G +GAGKSTL+ IL+G
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 62.0 bits (151), Expect = 1e-11
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING------H 92
PN L ++ + +GE ++GPSGAGKSTLL ++ + T G+I +NG
Sbjct: 11 PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-TSGTIRVNGQDVSDLR 69
Query: 93 ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT 152
R + R+ + QD +L + V E NVA AL++ + RK V L
Sbjct: 70 GRAIPYLRRKIGVVFQDFRLLPDRNVYE--NVAFALEVTGVPPREIRKRVPAAL-ELVGL 126
Query: 153 NHAQRCFLSGPWGTFESSVLLALAMYNR 180
+H R + G + V +A A+ N
Sbjct: 127 SHKHRALPAELSGGEQQRVAIARAIVNS 154
Score = 38.9 bits (91), Expect = 0.001
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L ++ + +GE ++GPSGAGKSTLL ++
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYK 49
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 62.1 bits (152), Expect = 1e-11
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKLS 103
L VS +R GE+ ++GP+GAGK+TL N+++G+ T GS+ +G + L
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF-LRPTSGSVLFDGEDITGLPPHEIAR 74
Query: 104 CYI---MQDNQLHANLTVEEAMNVATAL 128
I Q +L LTV E NV A
Sbjct: 75 LGIGRTFQIPRLFPELTVLE--NVMVAA 100
Score = 53.2 bits (129), Expect = 2e-08
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
L VS +R GE+ ++GP+GAGK+TL N+++G+
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 62.2 bits (152), Expect = 1e-11
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 5/53 (9%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSITING 91
K ILK V+ ++ GE+ AIMGP+G+GKSTL + G Y+ TEG I +G
Sbjct: 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV--TEGEILFDG 67
Score = 56.4 bits (137), Expect = 1e-09
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKI 222
K ILK V+ ++ GE+ AIMGP+G+GKSTL + G Y++
Sbjct: 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV 58
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 62.3 bits (152), Expect = 1e-11
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFR 100
L VS ++ GE ++GPSG GK+TLL ++ G++T T G I ++G + NL +
Sbjct: 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP-TSGEILLDGKDITNLPPHK 71
Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
+ + Q+ L +LTV E N+A L+L K ++ V L
Sbjct: 72 RPVNTVFQNYALFPHLTVFE--NIAFGLRLKKLPKAEIKERVAEAL 115
Score = 45.3 bits (108), Expect = 7e-06
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
L VS ++ GE ++GPSG GK+TLL ++ G+
Sbjct: 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF 49
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 63.5 bits (155), Expect = 1e-11
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERN 95
P + L+ VS + GE A++GPSGAGKSTLLN+L G+ TEGSI +NG + +
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-TEGSIAVNGVPLADAD 390
Query: 96 LSQFRKLSCYIMQDNQLHANLTVEE----AMNVATALKLGKDLTKAARKDVVRTL 146
+R ++ Q L A T+ E A A+ ++ + L +A + V L
Sbjct: 391 ADSWRDQIAWVPQHPFLFAG-TIAENIRLARPDASDAEIREALERAGLDEFVAAL 444
Score = 52.7 bits (127), Expect = 5e-08
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
L+ VS + GE A++GPSGAGKSTLLN+L G+
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF 371
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 62.4 bits (152), Expect = 2e-11
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRK 101
T LK +S ++ GE ++GPSG GK+TLL I+ G + T G+I G + L ++
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-TAGTIYQGGRDITRLPPQKR 76
Query: 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
+ Q L NLTV + N+A LK + + +A + V L
Sbjct: 77 DYGIVFQSYALFPNLTVAD--NIAYGLK-NRGMGRAEVAERVAEL 118
Score = 45.4 bits (108), Expect = 1e-05
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
T LK +S ++ GE ++GPSG GK+TLL I+ G
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG 52
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 61.3 bits (149), Expect = 3e-11
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
L+ VS + SGEL ++GPSG GK+TLLN++ G+ T + GSI +NG R +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNG--RRIEGPGAER 76
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYR---SDTNHAQRCFL 160
+ Q+ L L V + NVA L+L + + KA R+++ + H L
Sbjct: 77 GVVFQNEALLPWLNVID--NVAFGLQL-RGIEKAQRREIAHQMLALVGLEGAEHKYIWQL 133
Query: 161 SG 162
SG
Sbjct: 134 SG 135
Score = 46.7 bits (111), Expect = 3e-06
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
L+ VS + SGEL ++GPSG GK+TLLN++ G+
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF 54
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 61.2 bits (149), Expect = 4e-11
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNL 96
K + V+ + GE ++GPSG+GK+T L ++ T G I I+G + +
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP-TSGEILIDGEDISDLDP 70
Query: 97 SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
+ R+ Y++Q L +LTV E N+AT KL K K L
Sbjct: 71 VELRRKIGYVIQQIGLFPHLTVAE--NIATVPKL-LGWDKERIKKRADEL 117
Score = 40.4 bits (95), Expect = 4e-04
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
R K + V+ + GE ++GPSG+GK+T L
Sbjct: 10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTL 44
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 60.4 bits (147), Expect = 5e-11
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 10/87 (11%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------ 93
K +L VS + G +T+I+GP+GAGKSTLL+++ G ITI+G E
Sbjct: 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMM-SRLLKKDSGEITIDGLELTSTPS 70
Query: 94 RNLSQFRKLSCYIMQDNQLHANLTVEE 120
+ L++ KLS + Q+N +++ LTV +
Sbjct: 71 KELAK--KLSI-LKQENHINSRLTVRD 94
Score = 48.8 bits (117), Expect = 5e-07
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL-------TGYKILRQLWLLEYS 232
K +L VS + G +T+I+GP+GAGKSTLL+++ +G + L L
Sbjct: 10 SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTP 69
Query: 233 HKDLA 237
K+LA
Sbjct: 70 SKELA 74
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 61.3 bits (149), Expect = 6e-11
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLS 97
P +K +LK +S + GE AI+GPSG+GKSTL+ +L T G I I+G + R++S
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-DPTSGEILIDGIDIRDIS 397
Query: 98 QF--RKLSCYIMQDNQL 112
RK + QD L
Sbjct: 398 LDSLRKRIGIVSQDPLL 414
Score = 43.2 bits (102), Expect = 7e-05
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+K +LK +S + GE AI+GPSG+GKSTL+ +L
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 59.4 bits (144), Expect = 1e-10
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQFR 100
L V+ + +G L A++GPSG+GKSTLL I+ G + G I +NG + R ++ R
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-DSGRIRLNGQDATRVHARDR 72
Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
K+ ++ Q L +LTV + N+A L++ K KA K V L
Sbjct: 73 KIG-FVFQHYALFKHLTVRD--NIAFGLEIRK-HPKAKIKARVEEL 114
Score = 44.4 bits (105), Expect = 1e-05
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L V+ + +G L A++GPSG+GKSTLL I+ G
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG 48
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 58.3 bits (142), Expect = 2e-10
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG----YKTSGTEGSITINGHERN 95
+K LK +S + GE+TA++GPSG GKSTLL +L + EG + ++G +
Sbjct: 11 GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70
Query: 96 LSQFRKLS--CYI-M--QDNQLHANL---TVEEAMNVATALKLGKDLTKAARKDVVR 144
L + M Q N ++ + NVA L+L K + V
Sbjct: 71 DLDVDVLELRRRVGMVFQ----KPNPFPGSIYD--NVAYGLRLHGIKLKEELDERVE 121
Score = 52.2 bits (126), Expect = 3e-08
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+K LK +S + GE+TA++GPSG GKSTLL +L
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLL 46
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 58.5 bits (142), Expect = 2e-10
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 18/96 (18%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--------HERNL 96
L VS + SGEL A++GPSG+GK+TLL ++ G + G+I G ERN+
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-RPDSGTILFGGEDATDVPVQERNV 76
Query: 97 SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 132
++ Q L ++TV + NVA L++
Sbjct: 77 G-------FVFQHYALFRHMTVFD--NVAFGLRVKP 103
Score = 48.9 bits (117), Expect = 5e-07
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L VS + SGEL A++GPSG+GK+TLL ++ G
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG 50
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 58.4 bits (142), Expect = 3e-10
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 19/96 (19%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITING--------HE 93
T + VS +R GE+ ++GP+GAGK+TL N++TG YK + G++ G H
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHR 75
Query: 94 RN-LSQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 128
L R Q +L LTV E NVA
Sbjct: 76 IARLGIARTF-----QITRLFPGLTVLE--NVAVGA 104
Score = 49.5 bits (119), Expect = 3e-07
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
T + VS +R GE+ ++GP+GAGK+TL N++TG
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG 52
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 58.4 bits (142), Expect = 3e-10
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
+ +L+ +S + GE+TA++GP+GAGKSTLL + G + G I I G + + +
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP-SSGEIKIFG--KPVRKR 71
Query: 100 RKLSC--YIMQDNQLHAN----LTVEE--AMNVATALKLGKDLTKAARKDVVRTL 146
RK Y+ Q + + +TV++ + + L K ++ V L
Sbjct: 72 RKRLRIGYVPQ--KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEAL 124
Score = 48.8 bits (117), Expect = 6e-07
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ +L+ +S + GE+TA++GP+GAGKSTLL + G
Sbjct: 17 RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 58.0 bits (141), Expect = 3e-10
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ER 94
+ +L+ +S + +GE A++GPSG+GKSTL+N++ + G I I+GH +
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV-DSGRILIDGHDVRDY 69
Query: 95 NLSQFRKLSCYIMQDNQLHANLTVEEAMNVA 125
L+ R+ + QD L N TV E N+A
Sbjct: 70 TLASLRRQIGLVSQDVFLF-NDTVAE--NIA 97
Score = 44.9 bits (107), Expect = 9e-06
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
+L+ +S + +GE A++GPSG+GKSTL+N++
Sbjct: 13 DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP 49
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 57.7 bits (140), Expect = 4e-10
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH 92
+ L VS +R G A++GP+GAGKSTL ++LT + EG I++ GH
Sbjct: 13 ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVA-QEGQISVAGH 63
Score = 48.8 bits (117), Expect = 4e-07
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ L VS +R G A++GP+GAGKSTL ++LT
Sbjct: 13 ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTR 49
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 57.6 bits (140), Expect = 5e-10
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 25/122 (20%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQF---- 99
L +S + GEL I+GP+GAGK+T+++++TG KT EGS+ G + L +
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG-KTRPDEGSVLFGGTDLTGLPEHQIAR 76
Query: 100 ----RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA 155
RK Q + NLTV E + +L K V +LF+R
Sbjct: 77 AGIGRKF-----QKPTVFENLTVFENL----------ELALPRDKSVFASLFFRLSAEEK 121
Query: 156 QR 157
R
Sbjct: 122 DR 123
Score = 44.1 bits (105), Expect = 2e-05
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L +S + GEL I+GP+GAGK+T+++++TG
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG 50
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 57.3 bits (139), Expect = 6e-10
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITIN 90
N + N K IL +S ++ GE AI+GP+GAGK+TLL++LTG +SG +T+
Sbjct: 35 KNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGD---VTLL 91
Query: 91 GHER 94
G
Sbjct: 92 GRRF 95
Score = 49.6 bits (119), Expect = 3e-07
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
K IL +S ++ GE AI+GP+GAGK+TLL++LTG
Sbjct: 43 GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE 80
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 57.0 bits (138), Expect = 6e-10
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
++T + ++S + + ++GP+GAGKSTLL ++TG T G I +GH
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI-LRPTSGEIIFDGHPWTRKDLH 70
Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATAL 128
K+ I + L+ NLT E + V T L
Sbjct: 71 KIGSLI-ESPPLYENLTARENLKVHTTL 97
Score = 43.5 bits (103), Expect = 3e-05
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ 225
R ++T + ++S + + ++GP+GAGKSTLL ++TG ILR
Sbjct: 9 RFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG--ILRP 52
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and
a cytoplasmic membrane protein MPA2.
Length = 224
Score = 56.8 bits (138), Expect = 8e-10
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITIN 90
E E LK VS + GE ++G +GAGKSTLL +L G Y G++T+
Sbjct: 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVR 82
Query: 91 G 91
G
Sbjct: 83 G 83
Score = 49.1 bits (118), Expect = 3e-07
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E LK VS + GE ++G +GAGKSTLL +L G
Sbjct: 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG 70
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 57.8 bits (140), Expect = 9e-10
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER-NLS--QFR 100
+LK + L +GE+ A++G +GAGKSTL+ I+ G + G++ I G+ L+ +
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS-GTLEIGGNPCARLTPAKAH 84
Query: 101 KLSCYIM-QDNQLHANLTVEE 120
+L Y++ Q+ L NL+V+E
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKE 105
Score = 43.9 bits (104), Expect = 4e-05
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK + L +GE+ A++G +GAGKSTL+ I+ G
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG 59
Score = 27.3 bits (61), Expect = 7.7
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 46 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
+++S +R+GE+ + G GAG++ L L G + + G I +NG E
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG-GRIMLNGKE 326
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 57.7 bits (140), Expect = 1e-09
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLS- 97
+ LK+ + L GE AI+G SG+GKSTLL +L G +GSIT+NG E +L
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP-QQGSITLNGVEIASLDE 407
Query: 98 -QFRKLSCYIMQDNQL 112
R+ + Q L
Sbjct: 408 QALRETISVLTQRVHL 423
Score = 48.5 bits (116), Expect = 1e-06
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+ LK+ + L GE AI+G SG+GKSTLL +L G
Sbjct: 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA 387
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 56.5 bits (137), Expect = 1e-09
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQ- 98
+ +LK VS + +G+ AI+GPSG+GKST+L +L + + GSI I+G + R ++
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV-SSGSILIDGQDIREVTLD 71
Query: 99 -FRKLSCYIMQDNQL 112
R+ + QD L
Sbjct: 72 SLRRAIGVVPQDTVL 86
Score = 45.7 bits (109), Expect = 6e-06
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+ +LK VS + +G+ AI+GPSG+GKST+L +L
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL 47
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 55.8 bits (135), Expect = 2e-09
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------ 93
+ +LK VS + GE+ AI+G SG+GKSTLL++L G T G + NG
Sbjct: 16 LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-TSGEVLFNGQSLSKLSS 74
Query: 94 RNLSQFRKLSC-YIMQDNQLHANLTVEEAMNVATALKLGK 132
++ R +I Q + L + T E NVA L +GK
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALE--NVAMPLLIGK 112
Score = 45.0 bits (107), Expect = 9e-06
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK VS + GE+ AI+G SG+GKSTLL++L G
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG 53
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 55.4 bits (134), Expect = 2e-09
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH-----ERNL---SQFRKLSCY 105
+ E+T I G SGAGKSTLL + G + G+I +NG + + Q RK+
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKP-DGGTIVLNGTVLFDSRKKINLPPQQRKIG-L 79
Query: 106 IMQDNQLHANLTVEEAMNVATALK 129
+ Q L +L V E N+A LK
Sbjct: 80 VFQQYALFPHLNVRE--NLAFGLK 101
Score = 41.9 bits (99), Expect = 9e-05
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 196 SGELTAIMGPSGAGKSTLLNILTG 219
+ E+T I G SGAGKSTLL + G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAG 45
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 55.7 bits (135), Expect = 2e-09
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNL 96
+K +LK ++ ++ GE AI+GP+GAGK+TL+N+L + +G I I+G + +
Sbjct: 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-QKGQILIDGIDIRDISR 72
Query: 97 SQFRKLSCYIMQD 109
R + ++QD
Sbjct: 73 KSLRSMIGVVLQD 85
Score = 44.1 bits (105), Expect = 2e-05
Identities = 18/43 (41%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
Y+ +K +LK ++ ++ GE AI+GP+GAGK+TL+N+L +
Sbjct: 12 YD--EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF 52
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 56.5 bits (136), Expect = 2e-09
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 18/97 (18%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY-KTSGTEGSITING--------H 92
T+L +S + +GEL A++G SG GK+TLL + G+ K +G G I I H
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 93 ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 129
+R L+ + Q+ L +L VE+ NVA L+
Sbjct: 78 KRGLA-------LLFQNYALFPHLKVED--NVAFGLR 105
Score = 45.0 bits (106), Expect = 2e-05
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
T+L +S + +GEL A++G SG GK+TLL + G+
Sbjct: 14 AYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF 54
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 55.6 bits (135), Expect = 2e-09
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 22/133 (16%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLSQFR 100
ILK +S + G+ A++G SG GKST++++L + T G I ++G + NL R
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF-YDPTSGEILLDGVDIRDLNLRWLR 76
Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGK-DLT-----KAARK----DVVRTLFYRS 150
+ Q+ L T+ E N+ + GK D T +AA+K D + +L
Sbjct: 77 SQIGLVSQEPVLFDG-TIAE--NI----RYGKPDATDEEVEEAAKKANIHDFIMSLPDGY 129
Query: 151 DTNHAQR-CFLSG 162
DT +R LSG
Sbjct: 130 DTLVGERGSQLSG 142
Score = 41.8 bits (99), Expect = 1e-04
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
ILK +S + G+ A++G SG GKST++++L
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL 49
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 56.8 bits (138), Expect = 2e-09
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 21/86 (24%)
Query: 39 PNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE--- 93
P ++T L +VS +R GE AI+G G+GKSTLL +L G Y+ TEGS+ ++G +
Sbjct: 474 PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVDIRQ 531
Query: 94 -------RNLSQFRKLSCYIMQDNQL 112
RN+ Y+ QD +L
Sbjct: 532 IDPADLRRNIG-------YVPQDPRL 550
Score = 44.9 bits (107), Expect = 2e-05
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E L +VS +R GE AI+G G+GKSTLL +L G
Sbjct: 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG 513
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of
CydCD, subfamily C. The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilis, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism.
Length = 178
Score = 54.6 bits (132), Expect = 2e-09
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE 93
E+ +LK++S L+ GE A++G SG+GKSTLL +LTG K +G IT++G
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVP 65
Score = 45.8 bits (109), Expect = 3e-06
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E+ +LK++S L+ GE A++G SG+GKSTLL +LTG
Sbjct: 14 EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG 50
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 55.2 bits (134), Expect = 3e-09
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-------- 91
++ ++ VS ++ GE+ ++GP+GAGK+T ++ G G I ++G
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL-VKPDSGKILLDGQDITKLPM 69
Query: 92 HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
H+R R Y+ Q+ + LTVEE N+ L++ K +
Sbjct: 70 HKRA----RLGIGYLPQEASIFRKLTVEE--NILAVLEIRGLSKKEREE 112
Score = 43.7 bits (104), Expect = 2e-05
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
R ++ ++ VS ++ GE+ ++GP+GAGK+T ++ G
Sbjct: 9 RYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG 48
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 54.9 bits (133), Expect = 3e-09
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 23/107 (21%)
Query: 39 PNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNL 96
PN++ L +VS +R+GE AI+G G+GKSTLL +L G YK T GS+ ++G ++
Sbjct: 13 PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGT--DI 68
Query: 97 SQF-----RKLSCYIMQDNQLHA-----NLTV-------EEAMNVAT 126
Q R+ Y+ QD L N+T+ E + A
Sbjct: 69 RQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAE 115
Score = 43.3 bits (103), Expect = 3e-05
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E L +VS +R+GE AI+G G+GKSTLL +L G
Sbjct: 15 QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG 52
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 56.2 bits (136), Expect = 3e-09
Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 24/139 (17%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERN 95
P +L VS L GE AI+GPSG+GKSTLL L G +G +T++G +
Sbjct: 345 PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGL-LDPLQGEVTLDGVPVSSLD 403
Query: 96 LSQFRKLSCYIMQDNQLHA-----NLTV-------EEAMNVATALKLGKDLTKAARKDVV 143
+ R+ QD L NL + EE + L L A D +
Sbjct: 404 QDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWL--RALPDGL 461
Query: 144 RTLFYRSDTNHAQRCFLSG 162
T+ R LSG
Sbjct: 462 DTVL----GEGGAR--LSG 474
Score = 46.2 bits (110), Expect = 6e-06
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+L VS L GE AI+GPSG+GKSTLL L G
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAG 383
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 54.6 bits (132), Expect = 4e-09
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL 96
CE E+T+ +S L +GE I GP+GAGK+TLL IL G G + G +
Sbjct: 10 CERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-DAGEVYWQGE--PI 66
Query: 97 SQFRK---LSC-YIMQDNQLHANLTVEE 120
R+ + Y+ + LT E
Sbjct: 67 QNVRESYHQALLYLGHQPGIKTELTALE 94
Score = 44.2 bits (105), Expect = 1e-05
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E+T+ +S L +GE I GP+GAGK+TLL IL G
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG 50
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 55.7 bits (135), Expect = 5e-09
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
+ +LK +S R+ G+ AI+GP+GAGKSTLL +L G + G++ + G + F
Sbjct: 333 GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG-ELGPLSGTVKV-GETVKIGYF 390
Query: 100 RKLSCYIMQD-NQLHANLTVEEAM 122
Q ++L + TV E +
Sbjct: 391 D-------QHRDELDPDKTVLEEL 407
Score = 49.2 bits (118), Expect = 7e-07
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ +LK +S R+ G+ AI+GP+GAGKSTLL +L G
Sbjct: 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG 370
Score = 48.4 bits (116), Expect = 1e-06
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
+ +L++VS L GE ++G +GAGKSTLL IL G + G +T R
Sbjct: 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAG-ELEPDSGEVTRPKGLR----VGY 70
Query: 102 LSCYIMQDNQLHANLTVEEAM 122
LS Q+ L TV + +
Sbjct: 71 LS----QEPPLDPEKTVLDYV 87
Score = 43.4 bits (103), Expect = 6e-05
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++ +L++VS L GE ++G +GAGKSTLL IL G
Sbjct: 12 AYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAG 51
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 54.6 bits (132), Expect = 5e-09
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERN 95
K + +++ + GE ++GPSG+GK+T + ++ T G I I+G E++
Sbjct: 11 GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-TSGEIFIDGEDIREQD 69
Query: 96 LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
+ R+ Y++Q L ++TVEE N+A KL K K ++ L
Sbjct: 70 PVELRRKIGYVIQQIGLFPHMTVEE--NIALVPKLLK-WPKEKIRERADEL 117
Score = 36.5 bits (85), Expect = 0.006
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
K + +++ + GE ++GPSG+GK+T +
Sbjct: 12 GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTM 44
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 54.2 bits (131), Expect = 6e-09
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 21/117 (17%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--------H 92
T L ++ + GE ++GPSG GK+T L ++ G + T G I I G
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-TSGRIYIGGRDVTDLPPK 70
Query: 93 ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL---GKDLTKAARKDVVRTL 146
+R+++ + Q+ L+ ++TV + N+A LKL KD ++V L
Sbjct: 71 DRDIAM-------VFQNYALYPHMTVYD--NIAFGLKLRKVPKDEIDERVREVAELL 118
Score = 42.2 bits (100), Expect = 6e-05
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
R T L ++ + GE ++GPSG GK+T L ++ G
Sbjct: 7 TKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG 48
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 54.7 bits (132), Expect = 8e-09
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
+K + ++S + GE+ ++GP+GAGK+T ++ G TEG IT NG +
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL-LEPTEGEITWNGGPLSQEIKN 72
Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
++ Y+ ++ L+ +TVE+ + LK G + +K
Sbjct: 73 RIG-YLPEERGLYPKMTVEDQLKYLAELK-GMPKAEIQKK 110
Score = 37.0 bits (86), Expect = 0.006
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+K + ++S + GE+ ++GP+GAGK+T ++ G
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG 50
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 53.4 bits (129), Expect = 1e-08
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQ 98
+K +L +S ++ GE+ +GP+GAGK+T + I+ G G IT +G +N+
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL-IKPDSGEITFDGKSYQKNIEA 70
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 133
R++ +++ + NLT E + + L +
Sbjct: 71 LRRIGA-LIEAPGFYPNLTARENLRLLARLLGIRK 104
Score = 44.5 bits (106), Expect = 1e-05
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+K +L +S ++ GE+ +GP+GAGK+T + I+ G
Sbjct: 9 TYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG 48
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 53.5 bits (129), Expect = 1e-08
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQFRKL 102
L +S + GEL ++GP+GAGK+TL++++TG KT EG + +G L + R
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG-KTRPQEGEVLFDGDTDLTKLPEHRIA 79
Query: 103 SCYI---MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR 157
I Q + NLTV E + +L K V +LF R +R
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENL----------ELALNRDKSVFASLFARLRAEERRR 127
Score = 42.3 bits (100), Expect = 8e-05
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L +S + GEL ++GP+GAGK+TL++++TG
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG 53
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 53.4 bits (129), Expect = 1e-08
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITING 91
+ E LK +S + GE I+G +GAGKSTLL ++ G YK T G + + G
Sbjct: 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP--TSGKVKVTG 88
Score = 49.2 bits (118), Expect = 4e-07
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++ E LK +S + GE I+G +GAGKSTLL ++ G
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG 75
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 53.2 bits (128), Expect = 2e-08
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 23/131 (17%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH-------ER 94
K L+ ++ L SGEL ++GPSG GK+TLLN++ G+ GSIT++G ER
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH-GSITLDGKPVEGPGAER 72
Query: 95 NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH 154
+ + Q+ L V++ NVA L+L + K R ++ + +
Sbjct: 73 GV---------VFQNEGLLPWRNVQD--NVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEG 120
Query: 155 AQRCF---LSG 162
A++ + LSG
Sbjct: 121 AEKRYIWQLSG 131
Score = 44.7 bits (106), Expect = 1e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
K L+ ++ L SGEL ++GPSG GK+TLLN++ G+
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF 50
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 53.8 bits (130), Expect = 2e-08
Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 10/95 (10%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF-- 99
K ++ ++ + +GE ++GPSG GK+T+L ++ G++T G I ++G ++++
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP-DSGRIMLDG--QDITHVPA 83
Query: 100 --RKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 132
R ++ + Q L ++TV E NVA L++ K
Sbjct: 84 ENRHVNT-VFQSYALFPHMTVFE--NVAFGLRMQK 115
Score = 41.9 bits (99), Expect = 1e-04
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
K ++ ++ + +GE ++GPSG GK+T+L ++ G+
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF 63
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 52.7 bits (127), Expect = 2e-08
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNLS 97
E LK +S + GE+ +GP+GAGK+T L IL+G T G + + G +R
Sbjct: 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-TSGEVRVAGLVPWKRRKK 91
Query: 98 QFRKLSCYIMQDNQLHANLTVEEAMNV 124
R++ Q QL +L V ++ +
Sbjct: 92 FLRRIGVVFGQKTQLWWDLPVIDSFYL 118
Score = 43.9 bits (104), Expect = 2e-05
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E LK +S + GE+ +GP+GAGK+T L IL+G
Sbjct: 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG 69
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 52.6 bits (127), Expect = 2e-08
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 16/116 (13%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-------- 91
++ ++ VS + SGE+ ++GP+GAGK+T ++ G G I ++
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL-VRPDSGKILLDDEDITKLPM 73
Query: 92 HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL-GKDLTKAARKDVVRTL 146
H+R R Y+ Q+ + LTVE+ N+ L++ KDL KA RK+ + L
Sbjct: 74 HKRA----RLGIGYLPQEASIFRKLTVED--NIMAVLEIREKDLKKAERKEELDAL 123
Score = 41.8 bits (99), Expect = 1e-04
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 170 SVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
S L+A + ++ ++ VS + SGE+ ++GP+GAGK+T ++ G
Sbjct: 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG 52
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 53.1 bits (128), Expect = 2e-08
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 10/70 (14%)
Query: 57 LTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH-----ERNLS---QFRKLSCYIMQ 108
+TA+ GPSG+GK++L+N++ G T EG I +NG E+ + + R++ Y+ Q
Sbjct: 26 ITALFGPSGSGKTSLINMIAGL-TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIG-YVFQ 83
Query: 109 DNQLHANLTV 118
D +L + TV
Sbjct: 84 DARLFPHYTV 93
Score = 38.1 bits (89), Expect = 0.002
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 199 LTAIMGPSGAGKSTLLNILTG 219
+TA+ GPSG+GK++L+N++ G
Sbjct: 26 ITALFGPSGSGKTSLINMIAG 46
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 52.7 bits (127), Expect = 3e-08
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY-KTSGTEGSITING 91
NE ILK ++ + GE+ AIMGP+G+GKSTL ++ G+ EG I G
Sbjct: 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG 70
Score = 50.0 bits (120), Expect = 2e-07
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKIL 223
++E ILK ++ + GE+ AIMGP+G+GKSTL ++ G YKIL
Sbjct: 16 SVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL 62
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 52.1 bits (126), Expect = 3e-08
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 21/111 (18%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITING-------- 91
+ IL+ VS + GE+T ++G +G GK+TLL L G GSI ++G
Sbjct: 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS--GSIRLDGEDITKLPP 69
Query: 92 HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV 142
HER R Y+ Q ++ LTVEE N L G + +
Sbjct: 70 HER----ARAGIAYVPQGREIFPRLTVEE--N----LLTGLAALPRRSRKI 110
Score = 42.1 bits (100), Expect = 8e-05
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ IL+ VS + GE+T ++G +G GK+TLL L G
Sbjct: 11 GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG 48
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 52.2 bits (126), Expect = 4e-08
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL----TGYKTSGTEGSITINGHE-- 93
+K LK ++ + ++TA++GPSG GKSTLL L + EG + ++G
Sbjct: 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY 77
Query: 94 ---RNLSQFRK 101
++ + R+
Sbjct: 78 DPKVDVVELRR 88
Score = 48.3 bits (116), Expect = 9e-07
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+K LK ++ + ++TA++GPSG GKSTLL L
Sbjct: 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL 53
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 52.0 bits (125), Expect = 4e-08
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKLS 103
LK+VS + G+ I+GP+G+GKS LL + G+ + G I +NG + NL ++
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS-GKILLNGKDITNLPPEKRDI 73
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKL 130
Y+ Q+ L ++TV + N+A LK
Sbjct: 74 SYVPQNYALFPHMTVYK--NIAYGLKK 98
Score = 40.0 bits (94), Expect = 4e-04
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
LK+VS + G+ I+GP+G+GKS LL + G+
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF 48
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 51.6 bits (124), Expect = 4e-08
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQFRKL 102
++ VS R+R GE+ ++GP+GAGK+T + +LT T G T+ GH+ R + R+
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL-LKPTSGRATVAGHDVVREPREVRRR 74
Query: 103 SCYIMQDNQLHANLTVEEAM 122
+ QD + LT E +
Sbjct: 75 IGIVFQDLSVDDELTGWENL 94
Score = 43.1 bits (102), Expect = 4e-05
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++ VS R+R GE+ ++GP+GAGK+T + +LT
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT 48
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 52.5 bits (126), Expect = 4e-08
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 48 VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ---FRKLSC 104
VS + GE+ A++G SG GKSTLL +L G++ T G I ++G + LS +++
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-TAGQIMLDGVD--LSHVPPYQRPIN 94
Query: 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
+ Q L ++TVE+ N+A LK K L KA V
Sbjct: 95 MMFQSYALFPHMTVEQ--NIAFGLKQDK-LPKAEIASRV 130
Score = 39.4 bits (92), Expect = 0.001
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221
VS + GE+ A++G SG GKSTLL +L G++
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFE 69
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 51.1 bits (123), Expect = 5e-08
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
T L +S + GE+ ++GP+GAGK+T + ++ G G + +G +++
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI-ILPDSGEVLFDGKPLDIAARN 70
Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALK-LGKDLTKAARKDVVRTL 146
++ Y+ ++ L+ + V + + LK L K + AR+ + L
Sbjct: 71 RIG-YLPEERGLYPKMKVIDQLVYLAQLKGLKK---EEARRRIDEWL 113
Score = 43.0 bits (102), Expect = 3e-05
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 172 LLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L + R T L +S + GE+ ++GP+GAGK+T + ++ G
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG 48
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 51.2 bits (123), Expect = 8e-08
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN 90
T T P EK L +S + G+ ++G +GAGKSTLLN + G T G I I+
Sbjct: 8 TKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD-LKPTSGQILID 66
Query: 91 GHE-RNLSQFRK--LSCYIMQDNQ--LHANLTVEEAMNVA 125
G + S ++ L + QD LT+EE + +A
Sbjct: 67 GVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA 106
Score = 41.9 bits (99), Expect = 1e-04
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
EK L +S + G+ ++G +GAGKSTLLN + G
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD 55
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 51.8 bits (125), Expect = 8e-08
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNL---SQFR 100
VS ++ GE+ A++G +GAGKSTL+ IL G Y+ G I ++G E +
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP--DSGEIRVDGKEVRIKSPRDAI 77
Query: 101 KLSCYIM-QDNQLHANLTVEEAMNVATALKLGKDL---TKAARKDVVR 144
+L ++ Q L LTV E N+ L+ K + AR +
Sbjct: 78 RLGIGMVHQHFMLVPTLTVAE--NIILGLEPSKGGLIDRRQARARIKE 123
Score = 42.9 bits (102), Expect = 7e-05
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
VS ++ GE+ A++G +GAGKSTL+ IL G
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL 53
Score = 41.0 bits (97), Expect = 3e-04
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
+K VS +R+GE+ I G +G G+S L+ ++G + G I +NG +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-PASGRILLNGKD 321
Score = 34.1 bits (79), Expect = 0.058
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+K VS +R+GE+ I G +G G+S L+ ++G
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISG 306
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 51.3 bits (123), Expect = 9e-08
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQ 98
+ L VS + G + +GP+GAGKST + I+TGY GS+ + G + +N +
Sbjct: 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY-LPPDSGSVQVCGEDVLQNPKE 72
Query: 99 FRKLSCYIMQDNQLHANLTVEE 120
++ Y+ + N L+ ++ V E
Sbjct: 73 VQRNIGYLPEHNPLYLDMYVRE 94
Score = 42.8 bits (101), Expect = 7e-05
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+ L VS + G + +GP+GAGKST + I+TGY
Sbjct: 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY 51
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 50.6 bits (122), Expect = 9e-08
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--- 95
PN +LK++S ++ GE I+G +G+GKS+LL L + GSI I+G + +
Sbjct: 14 PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIG 72
Query: 96 LSQFRKLSCYIMQDNQL 112
L R I QD L
Sbjct: 73 LHDLRSRISIIPQDPVL 89
Score = 40.6 bits (96), Expect = 3e-04
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
R + +LK++S ++ GE I+G +G+GKS+LL L
Sbjct: 13 RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL 50
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 51.7 bits (124), Expect = 1e-07
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95
LKSV+ + GE+ A++G +GAGKSTL+ +L+G T+G+ITIN N
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-TKGTITINNINYN 70
Score = 41.7 bits (98), Expect = 2e-04
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
LKSV+ + GE+ A++G +GAGKSTL+ +L+G
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG 53
Score = 36.7 bits (85), Expect = 0.009
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 46 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN----LSQFRK 101
+ +S + GE+ G G+G++ L+N L G G I +NG + + L +K
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR-AGGEIRLNGKDISPRSPLDAVKK 338
Query: 102 LSCYIMQ---DNQLHANLTVEEAMNVATALKLGK 132
YI + DN N ++ + M ++ +LK G
Sbjct: 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGG 372
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 51.6 bits (124), Expect = 1e-07
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 15/115 (13%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL-------TG-YKTSGTEGSITINGHERN 95
+LK +S + +GE+ AI+G SG+GKSTL+NIL +G Y+ +G + + T++
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVA-TLDADA-- 79
Query: 96 LSQFRKLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYR 149
L+Q R+ +I Q L ++LT + + V A+ G L + R + L R
Sbjct: 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVP-AVYAG--LERKQRLLRAQELLQR 131
Score = 47.8 bits (114), Expect = 2e-06
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+LK +S + +GE+ AI+G SG+GKSTL+NIL
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNIL 54
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 50.9 bits (122), Expect = 1e-07
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---N 95
P+ IL ++S R++ GE+ I+G SG+GKSTL ++ + G + ++GH+ +
Sbjct: 12 PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP-ENGRVLVDGHDLALAD 70
Query: 96 LSQFRKLSCYIMQDNQLHANLTVEEAMNVATA 127
+ R+ ++Q+N L N ++ + N+A A
Sbjct: 71 PAWLRRQVGVVLQENVLF-NRSIRD--NIALA 99
Score = 38.2 bits (89), Expect = 0.002
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
IL ++S R++ GE+ I+G SG+GKSTL ++ +
Sbjct: 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 51.5 bits (124), Expect = 1e-07
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKL-- 102
L +S R+G++ A+MG +GAGKSTLL IL+G GSI I+G E +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-DAGSILIDGQEMRFASTTAALA 78
Query: 103 --SCYIMQDNQLHANLTVEE 120
I Q+ L +TV E
Sbjct: 79 AGVAIIYQELHLVPEMTVAE 98
Score = 44.9 bits (107), Expect = 2e-05
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L +S R+G++ A+MG +GAGKSTLL IL+G
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSG 52
Score = 32.2 bits (74), Expect = 0.23
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 48 VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL 96
+S +R+GE+ + G GAG+S L+ +L G T T G + ++G ++
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYG-ATRRTAGQVYLDGKPIDI 319
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 51.6 bits (124), Expect = 1e-07
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
+K L+ +S L++GE AI+GPSG+GKSTL ++ G T GS+ ++G +
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGI-WPPTSGSVRLDGADLKQWD 386
Query: 99 FRKLS---CYIMQDNQLHANLTVEEAMNVA 125
Y+ QD +L TV E N+A
Sbjct: 387 RETFGKHIGYLPQDVELFPG-TVAE--NIA 413
Score = 48.1 bits (115), Expect = 2e-06
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+K L+ +S L++GE AI+GPSG+GKSTL ++ G
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG 366
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 49.7 bits (119), Expect = 2e-07
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----- 93
P +LK ++ GE+ A++G +GAGKSTLL L G G++ I+G
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL-LRPQSGAVLIDGEPLDYSR 60
Query: 94 RNLSQFRKLSCYIMQ--DNQLHA 114
+ L + R+ + Q D+QL A
Sbjct: 61 KGLLERRQRVGLVFQDPDDQLFA 83
Score = 44.3 bits (105), Expect = 1e-05
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY------KILRQLWLLEYSHKDL 236
+LK ++ GE+ A++G +GAGKSTLL L G +L L+YS K L
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGL 63
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 49.7 bits (119), Expect = 2e-07
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--HER 94
C E+ + + +S L +GE + GP+G GK+TLL IL G G + NG
Sbjct: 8 CSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-DSGEVRWNGTALAE 66
Query: 95 NLSQFRKLSCYIMQDNQLHANLTVEE 120
+ + Y+ L L+ E
Sbjct: 67 QRDEPHRNILYLGHLPGLKPELSALE 92
Score = 41.6 bits (98), Expect = 1e-04
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E+ + + +S L +GE + GP+G GK+TLL IL G
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG 48
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 48.6 bits (117), Expect = 2e-07
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
K +LK +S + G+ ++G +GAGKSTLL ++ G + EG +T G + F
Sbjct: 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG-ELEPDEGIVTW-GSTVKIGYF 68
Query: 100 RKLS 103
+LS
Sbjct: 69 EQLS 72
Score = 44.4 bits (106), Expect = 5e-06
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
K +LK +S + G+ ++G +GAGKSTLL ++ G
Sbjct: 9 TYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG 48
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 49.4 bits (118), Expect = 2e-07
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HE 93
CE + + + +S L +GE + GP+G+GK+TLL IL G G + +NG
Sbjct: 8 CERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-LAGRVLLNGGPLDF 66
Query: 94 RNLSQFRKLSCYIMQDNQLHANLTVEE 120
+ S R L Y+ + L+V E
Sbjct: 67 QRDSIARGLL-YLGHAPGIKTTLSVLE 92
Score = 42.1 bits (99), Expect = 7e-05
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ + +S L +GE + GP+G+GK+TLL IL G
Sbjct: 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG 48
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 50.7 bits (122), Expect = 2e-07
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNL- 96
+K ILK +S L++GE I+GPSG+GKSTL +L G + T GS+ ++G +
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP--TSGSVRLDGADLRQW 403
Query: 97 --SQFRKLSCYIMQDNQLHANLTVEEAMNVA 125
Q + Y+ QD +L T+ E N+A
Sbjct: 404 DREQLGRHIGYLPQDVELFDG-TIAE--NIA 431
Score = 49.2 bits (118), Expect = 7e-07
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+K ILK +S L++GE I+GPSG+GKSTL +L G
Sbjct: 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 50.0 bits (120), Expect = 2e-07
Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE---R 94
+E LK+VS + GE AI+G +G+GKST+ ILTG K G I I+G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITISKE 76
Query: 95 NLSQFRKLSCYIMQ--DNQLHANLTVEE 120
NL + RK I Q DNQ TVE+
Sbjct: 77 NLKEIRKKIGIIFQNPDNQF-IGATVED 103
Score = 36.9 bits (86), Expect = 0.005
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E LK+VS + GE AI+G +G+GKST+ ILTG
Sbjct: 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTG 57
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 49.6 bits (119), Expect = 2e-07
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT-------GYKTSGT---EGSITI 89
EK LK+++ + ++TA++GPSG GKSTLL L G + G +G I
Sbjct: 12 GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG-QDI 70
Query: 90 NGHERNLSQFRKLSCYIMQDNQLHANLTVEEAM-NVATALKLGKDLTKAARKDVVRTL 146
+ ++ + R+ + Q N N+A +L K ++V
Sbjct: 71 YDKKIDVVELRRRVGMVFQ----KPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEES 124
Score = 45.0 bits (107), Expect = 1e-05
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
EK LK+++ + ++TA++GPSG GKSTLL
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLL 44
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 50.3 bits (121), Expect = 3e-07
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-EGSITINGHE---RNLSQFR 100
L +VS ++R+GE+ ++ G +GAGKSTL+ +L+G GT EG I G E N+
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKD 141
+ I +H L + + ++V + LG ++T D
Sbjct: 81 RAGIAI-----IHQELALVKELSVLENIFLGNEITPGGIMD 116
Score = 37.6 bits (88), Expect = 0.004
Identities = 16/33 (48%), Positives = 27/33 (81%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L +VS ++R+GE+ ++ G +GAGKSTL+ +L+G
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53
Score = 29.9 bits (68), Expect = 1.4
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
P+ K + VS LR GE+ I G GAG++ L+ L G EG I I+G
Sbjct: 273 PHIK-RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKP 326
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 48.6 bits (117), Expect = 4e-07
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH 92
LK ++ + GEL AI+GP G+GKS+LL+ L G + GS+++ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG-ELEKLSGSVSVPGS 67
Score = 44.0 bits (105), Expect = 1e-05
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
LK ++ + GEL AI+GP G+GKS+LL+ L G
Sbjct: 13 GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG 53
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 48.6 bits (116), Expect = 5e-07
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
+ IL ++S LR+GE I GPSG GKSTLL I+ S T G++ G +
Sbjct: 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL-ISPTSGTLLFEGED 70
Score = 47.8 bits (114), Expect = 1e-06
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 168 ESSVLLALAMYN-RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNI 216
E+S LL L + IL ++S LR+GE I GPSG GKSTLL I
Sbjct: 3 ENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKI 52
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 48.8 bits (117), Expect = 6e-07
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
T L +S +R+GE+ ++GP+GAGKSTLL + G G GSI G + L +
Sbjct: 8 VSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPG-SGSIQFAG--QPLEAWS 63
Score = 45.3 bits (108), Expect = 7e-06
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YK---ILRQLWLLEYS 232
N + T L +S +R+GE+ ++GP+GAGKSTLL + G L +S
Sbjct: 4 NDVAVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWS 63
Query: 233 HKDLALCR 240
+LA R
Sbjct: 64 AAELARHR 71
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 48.9 bits (117), Expect = 7e-07
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 39 PNEKTI--LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--R 94
E++I ++ +S + GE+ +G +GAGKST L +LTG T G + +NG + R
Sbjct: 32 RKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTG-LLLPTSGKVRVNGKDPFR 90
Query: 95 NLSQFRKLSCYIM-QDNQLHANLTVEEAMNVATALK 129
++ + +M Q QL +L +++ V +
Sbjct: 91 RREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY 126
Score = 38.1 bits (89), Expect = 0.002
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 188 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ +S + GE+ +G +GAGKST L +LTG
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTG 72
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 48.6 bits (117), Expect = 7e-07
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 23/104 (22%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL---NILTGYKTSGTEGSITINGH---- 92
L +VS + +GE+ ++G SGAGKSTL+ N+L T G + ++G
Sbjct: 16 RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL----ERPTSGRVLVDGQDLTA 71
Query: 93 --ERNLSQFRKLSCYIMQDNQLHANL----TVEEAMNVATALKL 130
E+ L + R+ I Q H NL TV + NVA L+L
Sbjct: 72 LSEKELRKARRQIGMIFQ----HFNLLSSRTVFD--NVALPLEL 109
Score = 36.3 bits (85), Expect = 0.010
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL---NIL 217
L +VS + +GE+ ++G SGAGKSTL+ N+L
Sbjct: 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL 54
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 48.2 bits (115), Expect = 7e-07
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSITING 91
+K IL+ ++ +R GE+ AIMGP+G+GKSTL L G Y+ T G++ G
Sbjct: 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV--TGGTVEFKG 64
Score = 45.9 bits (109), Expect = 5e-06
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ +K IL+ ++ +R GE+ AIMGP+G+GKSTL L G
Sbjct: 11 VEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 48.4 bits (116), Expect = 7e-07
Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE 93
+V+ +R E+ +++GP+GAGK+T+ N LTG YK +G G+I + G
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG--GTILLRGQH 68
Score = 40.4 bits (95), Expect = 4e-04
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+V+ +R E+ +++GP+GAGK+T+ N LTG+
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 48.4 bits (115), Expect = 7e-07
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----S 97
+ +++ VS + SGE+ ++GP+GAGK+T ++ G G+I I+ + +L +
Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI-VPRDAGNIIIDDEDISLLPLHA 74
Query: 98 QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH 154
+ R+ Y+ Q+ + L+V + N+ L++ DL+ R+D L H
Sbjct: 75 RARRGIGYLPQEASIFRRLSVYD--NLMAVLQIRDDLSAEQREDRANELMEEFHIEH 129
Score = 36.4 bits (84), Expect = 0.008
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 170 SVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ L A + + +++ VS + SGE+ ++GP+GAGK+T ++ G
Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG 51
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 48.3 bits (115), Expect = 8e-07
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE-------GSITING 91
+ IL+ +S R+ G +TA++G +GAGKSTLL L G T G G +T+NG
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Score = 43.7 bits (103), Expect = 3e-05
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ IL+ +S R+ G +TA++G +GAGKSTLL L G
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 48.2 bits (115), Expect = 9e-07
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE---- 93
P+ LK ++ + GE+ A++GP+GAGKSTL G K T G + I G
Sbjct: 12 PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIKYD 69
Query: 94 -RNLSQFRKLSCYIMQ--DNQLHANLTVEE 120
++L + RK + Q D+QL A TVEE
Sbjct: 70 KKSLLEVRKTVGIVFQNPDDQLFAP-TVEE 98
Score = 39.7 bits (93), Expect = 6e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL----NIL--TGYKILRQLWLLEYSHKDLALCR 240
LK ++ + GE+ A++GP+GAGKSTL IL T ++L + ++Y K L R
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 48.7 bits (116), Expect = 1e-06
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNLS 97
+ T+L V +R G L ++GP+GAGK+TLL + G T G++ + G +
Sbjct: 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA-GTVLVAGDDVEALSAR 73
Query: 98 QFRKLSCYIMQDNQLHANLTVEE 120
+ + QD L V +
Sbjct: 74 AASRRVASVPQDTSLSFEFDVRQ 96
Score = 42.1 bits (99), Expect = 1e-04
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ T+L V +R G L ++GP+GAGK+TLL + G
Sbjct: 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING 51
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 48.5 bits (116), Expect = 1e-06
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 14/93 (15%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING------HERNLS 97
+L +S + SG++ A++GPSG+GK+TLL I+ G + T G I +G H R+
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-HQTSGHIRFHGTDVSRLHARD-- 73
Query: 98 QFRKLSCYIMQDNQLHANLTVEEAMNVATALKL 130
RK+ ++ Q L ++TV + N+A L +
Sbjct: 74 --RKVG-FVFQHYALFRHMTVFD--NIAFGLTV 101
Score = 45.1 bits (107), Expect = 1e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+L +S + SG++ A++GPSG+GK+TLL I+ G
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG 50
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 47.9 bits (114), Expect = 1e-06
Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LS----- 97
+L +VS + GE+ AI+G SG+GKSTLL++L G T T G + NG + LS
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-TSGDVIFNGQPMSKLSSAAKA 82
Query: 98 --QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
+ +KL +I Q + L + T E NVA L +GK
Sbjct: 83 ELRNQKLG-FIYQFHHLLPDFTALE--NVAMPLLIGKKKPAEINS 124
Score = 41.7 bits (98), Expect = 1e-04
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+L +VS + GE+ AI+G SG+GKSTLL++L G
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG 57
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 47.5 bits (113), Expect = 1e-06
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFR 100
IL ++S +R+GE AI GPSG GKSTLL I+ S T G++ G + + +R
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL-ISPTSGTLLFEGEDVSTLKPEAYR 76
Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
+ Y Q L + TVE+ + ++ + AA + R
Sbjct: 77 QQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLAR 119
Score = 42.2 bits (99), Expect = 8e-05
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
IL ++S +R+GE AI GPSG GKSTLL I+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIV 49
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 47.6 bits (113), Expect = 1e-06
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG----YKTSGTEGSITINGHE---RNL 96
+L V+ + +TA+MGPSG+GKSTLL + Y + G + ++G + ++
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 97 SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 132
+ R+ + Q NL++ E NVA LKL +
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFE--NVALGLKLNR 111
Score = 39.1 bits (91), Expect = 8e-04
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+L V+ + +TA+MGPSG+GKSTLL +
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF 49
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 47.5 bits (113), Expect = 1e-06
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLSQFRKL 102
+L+ VS L GE+TA++GPSG+GKST++ +L Y+ G G + ++G + + + L
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG--GQVLLDGKPISQYEHKYL 86
Score = 45.9 bits (109), Expect = 4e-06
Identities = 17/32 (53%), Positives = 26/32 (81%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+L+ VS L GE+TA++GPSG+GKST++ +L
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALL 60
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 47.8 bits (114), Expect = 1e-06
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQFRKL 102
+ V+ ++R GE+ +GP+GAGK+T + +LT T G+ + G++ R + R+
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL-LRPTSGTARVAGYDVVREPRKVRRS 67
Query: 103 SCYIMQDNQLHANLTVEEAM 122
+ Q + +LT E +
Sbjct: 68 IGIVPQYASVDEDLTGRENL 87
Score = 41.6 bits (98), Expect = 2e-04
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 13/52 (25%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT-------------GYKILRQ 225
+ V+ ++R GE+ +GP+GAGK+T + +LT GY ++R+
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 47.4 bits (113), Expect = 1e-06
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 48 VSGRLRSGELTAIMGPSGAGKST----LLNILTGYKTSGTEGSITINGHERNLSQFR-KL 102
++ L+ GE+ A++G SG+GKS +L +L + T G I ++G R +
Sbjct: 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGLL-PPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 103 SCYIMQD--NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
IMQ+ + T+ + T LGK L+K AR ++ L
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHA-IETLRSLGK-LSKQARALILEAL 107
Score = 28.1 bits (63), Expect = 3.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 190 VSGRLRSGELTAIMGPSGAGKST 212
++ L+ GE+ A++G SG+GKS
Sbjct: 5 LNLSLKRGEVLALVGESGSGKSL 27
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 48.1 bits (115), Expect = 1e-06
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER 94
N++ IL ++S ++ GE I+GP+GAGKSTLL+++TG G +T+ G R
Sbjct: 271 NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRR 325
Score = 45.0 bits (107), Expect = 2e-05
Identities = 20/42 (47%), Positives = 31/42 (73%), Gaps = 3/42 (7%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
YN ++ IL ++S ++ GE I+GP+GAGKSTLL+++TG
Sbjct: 270 YN---DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 47.4 bits (113), Expect = 2e-06
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 12/92 (13%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL---NILTGYKTSGT--------EGSIT 88
+ +T+L + ++ GE+ AI+GPSG+GK+TLL N+L +GT + + +
Sbjct: 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE-QPEAGTIRVGDITIDTARS 72
Query: 89 INGHERNLSQFRKLSCYIMQDNQLHANLTVEE 120
++ + + Q R+ ++ Q+ L + TV E
Sbjct: 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLE 104
Score = 43.2 bits (102), Expect = 4e-05
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 9/51 (17%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLE 230
+ H +T+L + ++ GE+ AI+GPSG+GK+TL LR + LLE
Sbjct: 12 KFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTL---------LRCINLLE 53
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 47.5 bits (113), Expect = 2e-06
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ER 94
+ I ++S + G++TAIMGPSG GK+TLL L G + + G I +G
Sbjct: 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLR-LIGGQIAPDHGEILFDGENIPAMSRS 77
Query: 95 NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 129
L RK + Q L ++ V + NVA L+
Sbjct: 78 RLYTVRKRMSMLFQSGALFTDMNVFD--NVAYPLR 110
Score = 42.1 bits (99), Expect = 1e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ + I ++S + G++TAIMGPSG GK+TLL ++ G
Sbjct: 13 VSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG 55
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 46.7 bits (111), Expect = 2e-06
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG--TEGSITINGHERN-LS 97
+L +V+ + GE+ +MGPSG GKSTLL+ + G G + +N + L
Sbjct: 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73
Query: 98 QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
++ + QD L +L+V + + L L AR++
Sbjct: 74 AAQRQIGILFQDALLFPHLSVGQNL----LFALPATLKGNARRNAA 115
Score = 41.7 bits (98), Expect = 1e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
R+ +L +V+ + GE+ +MGPSG GKSTLL+ + G
Sbjct: 11 RLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGA 51
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 47.0 bits (112), Expect = 2e-06
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQFRKL 102
++ VS GE+T ++G +GAGK+TLL ++ G +TI+G + R+ S R+
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL-LIPDSGKVTIDGVDTVRDPSFVRRK 76
Query: 103 SCYIMQDNQLHANLTVEE 120
+ + L+A LT E
Sbjct: 77 IGVLFGERGLYARLTARE 94
Score = 39.3 bits (92), Expect = 8e-04
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++ VS GE+T ++G +GAGK+TLL ++
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT 50
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 47.2 bits (113), Expect = 2e-06
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLSQFRK 101
+ VS ++ GE ++G SG GKSTL ++ G + T G I G +++++ K
Sbjct: 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP--TSGEILFEG--KDITKLSK 82
Score = 40.3 bits (95), Expect = 4e-04
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ + VS ++ GE ++G SG GKSTL ++ G
Sbjct: 22 KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG 61
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 45.0 bits (107), Expect = 2e-06
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 69 STLLNILTGYKTSGTEGSITINGHERN----LSQFRKLSCYIMQDNQLHANLTVEE 120
STLL ++TG T G+I ++G + RK + QD QL LTV E
Sbjct: 1 STLLKLITG-LLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRE 55
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 46.7 bits (111), Expect = 2e-06
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSC 104
LK V+ ++ GE +++G SG GKSTLLN+++G T G + + G + ++
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRM-- 57
Query: 105 YIMQDNQLHANLTVEEAMNVATALK-LGKDLTKAARKDVVR 144
+ Q+ L LTV E N+A A+ + DL+K+ R+ +V
Sbjct: 58 VVFQNYSLLPWLTVRE--NIALAVDRVLPDLSKSERRAIVE 96
Score = 40.9 bits (96), Expect = 2e-04
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
LK V+ ++ GE +++G SG GKSTLLN+++G
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL 34
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 47.2 bits (112), Expect = 2e-06
Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 16 NNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
NN ++ +N +N P +LK+++ ++ GE+ AI G +G+GK++LL ++
Sbjct: 28 NNDRKHSSDDNNLFFSNLCLVGAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLI 83
Query: 76 TGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEE--AMNVATALKLGKD 133
G + +EG I +G SQF + +++N + ++ +E +V A +L +D
Sbjct: 84 LG-ELEPSEGKIKHSGRISFSSQFSWIMPGTIKENII-FGVSYDEYRYKSVVKACQLEED 141
Query: 134 LTKAARKD 141
+TK KD
Sbjct: 142 ITKFPEKD 149
Score = 35.6 bits (82), Expect = 0.014
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ +LK+++ ++ GE+ AI G +G+GK++LL ++ G
Sbjct: 47 LVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG 85
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 46.7 bits (111), Expect = 2e-06
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
+ I+ V G LT ++GP+G+GKSTLL +L G G++ + G + + R
Sbjct: 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA-LRPDAGTVDLAGVDLHGLSRRA 72
Query: 102 LSCYIM---QDNQLHANLTVEEAM 122
+ + QD+ LTV + +
Sbjct: 73 RARRVALVEQDSDTAVPLTVRDVV 96
Score = 41.0 bits (96), Expect = 3e-04
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ I+ V G LT ++GP+G+GKSTLL +L G
Sbjct: 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG 49
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 47.6 bits (113), Expect = 3e-06
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 16 NNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
N N ++ +N + P +LK++S +L G+L A+ G +G+GKS+LL ++
Sbjct: 417 NKARKQPNGDDGLFFSNFSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472
Query: 76 TGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEE--AMNVATALKLGKD 133
G + +EG I +G Q + ++DN + L+ +E +V A +L +D
Sbjct: 473 MG-ELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFG-LSYDEYRYTSVIKACQLEED 530
Query: 134 LTKAARKD 141
+ KD
Sbjct: 531 IALFPEKD 538
Score = 39.5 bits (92), Expect = 0.001
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQ 98
+ +L+ +S + G+ ++G +G+GKSTLL+ L + TEG I I+G N L
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL--LRLLSTEGEIQIDGVSWNSVTLQT 1289
Query: 99 FRK 101
+RK
Sbjct: 1290 WRK 1292
Score = 39.1 bits (91), Expect = 0.002
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 146 LFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGP 205
LF + N+ R +G G F S+ L + +LK++S +L G+L A+ G
Sbjct: 409 LFEKIKQNNKARKQPNGDDGLFFSNFSL--------YVTPVLKNISFKLEKGQLLAVAGS 460
Query: 206 SGAGKSTLLNILTG 219
+G+GKS+LL ++ G
Sbjct: 461 TGSGKSSLLMMIMG 474
Score = 30.3 bits (68), Expect = 1.1
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+ +L+ +S + G+ ++G +G+GKSTLL+ L
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 46.0 bits (110), Expect = 3e-06
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL 96
CE +E+ + +S L +GEL I GP+GAGK++LL IL G G + G +
Sbjct: 9 CERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL-ARPDAGEVLWQG--EPI 65
Query: 97 SQFRKLSCYIMQDNQLHANL 116
+ Q ++ H +L
Sbjct: 66 RR---------QRDEYHQDL 76
Score = 41.7 bits (99), Expect = 9e-05
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 193 RLRSGELTAIMGPSGAGKSTLLNILTG 219
L +GEL I GP+GAGK++LL IL G
Sbjct: 23 TLNAGELVQIEGPNGAGKTSLLRILAG 49
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 47.1 bits (113), Expect = 3e-06
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
+LK +S ++++GE A++G +G GKSTLL +LT +G I +NG ++ +
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP-QQGEILLNGQ--PIADYS--- 408
Query: 104 CYIMQDNQLHANLTV 118
+ L ++V
Sbjct: 409 -----EAALRQAISV 418
Score = 41.0 bits (97), Expect = 4e-04
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
+LK +S ++++GE A++G +G GKSTLL +LT
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 46.2 bits (110), Expect = 4e-06
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
+T+L +VS L+SGE A++G SG GKSTL +L G ++ ++G+++ G L++ +
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-SQGNVSWRG--EPLAKLNR 81
Score = 43.1 bits (102), Expect = 5e-05
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+T+L +VS L+SGE A++G SG GKSTL +L G
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVG 60
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 46.7 bits (111), Expect = 4e-06
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-EGSITINGHE---RNLSQ 98
L + +R GE + G +GAGKSTL+ IL+G GT +G I +G N+
Sbjct: 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRD 74
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 135
+ I +H LT+ ++VA + LG ++T
Sbjct: 75 TERAGIVI-----IHQELTLVPELSVAENIFLGNEIT 106
Score = 37.5 bits (87), Expect = 0.005
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L + +R GE + G +GAGKSTL+ IL+G
Sbjct: 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG 49
Score = 36.0 bits (83), Expect = 0.014
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 48 VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE---RNLSQ-FRKLS 103
VS LR GE+ + G GAG++ L+ L G EG++ ING RN +Q R
Sbjct: 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGI 338
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 138
+ +D + H + L +GK++T +
Sbjct: 339 AMVPEDRKRHG---------IVPILGVGKNITLSV 364
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 46.3 bits (110), Expect = 4e-06
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNLSQFRK 101
LK +S + G TA++GP+GAGKSTLL L G G + + G + N R
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP-QRGRVKVMGREVNAENEKWVRS 79
Query: 102 LSCYIMQ--DNQLHANLTVEE 120
+ Q D+Q+ ++ TV +
Sbjct: 80 KVGLVFQDPDDQVFSS-TVWD 99
Score = 37.8 bits (88), Expect = 0.003
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
LK +S + G TA++GP+GAGKSTLL L G
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG 53
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 46.0 bits (109), Expect = 5e-06
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS--QFR-K 101
+K VS LR G+ AI+G +G+GKSTL +L G T G I IN H + FR K
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM-IEPTSGEILINDHPLHFGDYSFRSK 87
Query: 102 LSCYIMQDNQLHANLTVEEAMNVAT----ALKLGKDLTKAAR-KDVVRTL 146
I QD N ++ + + L+L DL R K + TL
Sbjct: 88 RIRMIFQD----PNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETL 133
Score = 36.3 bits (84), Expect = 0.008
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+K VS LR G+ AI+G +G+GKSTL +L G
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAG 61
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 45.6 bits (108), Expect = 5e-06
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------RNLSQ 98
L+ V+ +R GE+ + G SGAGKSTLL ++ G + + G I +GH+ R +
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-SAGKIWFSGHDITRLKNREVPF 76
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVATAL 128
R+ I QD+ L + TV + NVA L
Sbjct: 77 LRRQIGMIFQDHHLLMDRTVYD--NVAIPL 104
Score = 36.8 bits (85), Expect = 0.005
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L+ V+ +R GE+ + G SGAGKSTLL ++ G
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG 50
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 46.3 bits (110), Expect = 5e-06
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 48 VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSC--- 104
L +TAI G SG+GK+TL+ ++ G T EG I +NG R L RK
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL-TRPDEGEIVLNG--RTLFDSRKGIFLPP 72
Query: 105 ------YIMQDNQLHANLTVEEAMN 123
Y+ Q+ +L +L+V +
Sbjct: 73 EKRRIGYVFQEARLFPHLSVRGNLR 97
Score = 38.2 bits (89), Expect = 0.003
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L +TAI G SG+GK+TL+ ++ G
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAG 45
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 46.2 bits (110), Expect = 5e-06
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGT----EGSITINGH 92
P E+ L V+ + SG AI+G +G+GKSTLL L G TSGT E IT
Sbjct: 17 PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKK 76
Query: 93 ERNLSQFRK 101
+ L RK
Sbjct: 77 NKKLKPLRK 85
Score = 38.5 bits (90), Expect = 0.002
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E+ L V+ + SG AI+G +G+GKSTLL L G
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG 55
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 45.8 bits (109), Expect = 5e-06
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF- 99
K IL +S L +G++TA++GP+G GKSTLL T G++ + + +S
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGD--KPISMLS 70
Query: 100 -RKLSCYI 106
R+L+ +
Sbjct: 71 SRQLARRL 78
Score = 43.1 bits (102), Expect = 5e-05
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
K IL +S L +G++TA++GP+G GKSTLL
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCF 48
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 46.5 bits (111), Expect = 5e-06
Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 24/148 (16%)
Query: 13 NNTNNTNNTNNTNNTNTNTNTNNN---------CEPNEKTILKSVSGRLRSGELTAIMGP 63
+T T + ++ P+ +T+L ++ +R GE I G
Sbjct: 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGE 427
Query: 64 SGAGKSTLLNILTGYKTSGTEGSITINGHERN--LSQ--------FRKLSCYIMQDNQLH 113
SGAGK++LL L G G+ G I++ L Q R+ CY
Sbjct: 428 SGAGKTSLLRALAGLWPWGS-GRISMPADSALLFLPQRPYLPQGTLREALCY----PNAA 482
Query: 114 ANLTVEEAMNVATALKLGKDLTKAARKD 141
+ + E + V + LG + +D
Sbjct: 483 PDFSDAELVAVLHKVGLGDLAERLDEED 510
Score = 38.4 bits (90), Expect = 0.002
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLW 227
+T+L ++ +R GE I G SGAGK++LL L G LW
Sbjct: 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG------LW 443
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 46.2 bits (110), Expect = 6e-06
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQ- 98
+ IL +S + G+ AI+G SGAGKST+L +L + GSITI+G + R+++Q
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF-YDVNSGSITIDGQDIRDVTQQ 333
Query: 99 -FRKLSCYIMQDNQLHANLT----VEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN 153
R+ + QD L N T ++ ATA ++G A D +++L DT
Sbjct: 334 SLRRAIGIVPQDTVLF-NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392
Query: 154 HAQR-CFLSG 162
+R LSG
Sbjct: 393 VGERGLKLSG 402
Score = 37.3 bits (87), Expect = 0.005
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+ IL +S + G+ AI+G SGAGKST+L +L
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLL 309
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 46.0 bits (110), Expect = 6e-06
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITING------H 92
+ VS L+ GE+ I+G SG+GKS L + G G I +G
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78
Query: 93 ERNLSQFR--KLSCYIMQD--NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF 147
E+ L + R +++ I QD L+ +T+ + + GK L+K K+ L
Sbjct: 79 EKELRKIRGKEIA-MIFQDPMTSLNPVMTIGDQI-AEVLRLHGKGLSKKEAKERAIELL 135
Score = 35.6 bits (83), Expect = 0.016
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ VS L+ GE+ I+G SG+GKS L + G
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG 53
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 45.2 bits (107), Expect = 7e-06
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
K ILK +S + G + I+GPSGAGKSTL+ L TEGSI I+G +
Sbjct: 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIK-LINRLIDPTEGSILIDGVD 66
Score = 39.0 bits (91), Expect = 0.001
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
K ILK +S + G + I+GPSGAGKSTL+ ++
Sbjct: 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI 49
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 45.6 bits (109), Expect = 9e-06
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 30/114 (26%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--------ERN 95
++K + + GE ++GPSG GKSTLL ++ G + T G I I G +R+
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI-TSGEIWIGGRVVNELEPADRD 77
Query: 96 LSQFRKLSCYIM--QDNQLHANLTVEEAMNVATALK---LGKD-----LTKAAR 139
++ M Q+ L+ +++V E N+A LK + K + +AAR
Sbjct: 78 IA---------MVFQNYALYPHMSVRE--NMAYGLKIRGMPKAEIEERVAEAAR 120
Score = 39.8 bits (94), Expect = 7e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++K + + GE ++GPSG GKSTLL ++ G
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 45.1 bits (107), Expect = 1e-05
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 172 LLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
LL A+ R E+T+L + + +G+ A++G SG GKSTLL +L G
Sbjct: 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60
Score = 42.7 bits (101), Expect = 7e-05
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
E+T+L + + +G+ A++G SG GKSTLL +L G
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 45.1 bits (107), Expect = 1e-05
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL 96
+LK VS + +G++ +I+G SG+GKST L + + + GSI +NG E L
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SAGSIRVNGEEIRL 72
Score = 39.3 bits (92), Expect = 7e-04
Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
HE +LK VS + +G++ +I+G SG+GKST L
Sbjct: 19 HE--VLKGVSLQANAGDVISIIGSSGSGKSTFL 49
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 44.8 bits (106), Expect = 1e-05
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSC 104
+K +S LR G+ AI+G +G+GKSTL +L G T G + I+ H + + S
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM-IEPTSGELLIDDHPLHFGDYSYRSQ 87
Query: 105 ---YIMQD--NQLHANLTVEEAMNVATALKLGKDLTKAAR-KDVVRTL 146
I QD L+ + + ++ L+L DL R K ++ TL
Sbjct: 88 RIRMIFQDPSTSLNPRQRISQILDF--PLRLNTDLEPEQREKQIIETL 133
Score = 36.3 bits (84), Expect = 0.008
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ R + + K +S LR G+ AI+G +G+GKSTL +L G
Sbjct: 20 WFRRQTVEAV-KPLSFTLREGQTLAIIGENGSGKSTLAKMLAG 61
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 45.0 bits (106), Expect = 1e-05
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--SGTEGSITINGHE---- 93
N+ L +V + GE+ A++GPSG+GKSTLL L+G T I + G
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 94 ----RNLSQFRKLSCYIMQDNQLHANLTVEE 120
R++ + R + YI Q L L+V E
Sbjct: 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLE 105
Score = 40.4 bits (94), Expect = 4e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++ L +V + GE+ A++GPSG+GKSTLL L+G
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSG 52
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 45.5 bits (108), Expect = 1e-05
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
++ L S+S + GE A++G SG+GKSTL+N++ + G I ++GH+
Sbjct: 342 GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF-YEPDSGQILLDGHD 395
Score = 40.1 bits (94), Expect = 7e-04
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
L S+S + GE A++G SG+GKSTL+N++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP 379
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 44.7 bits (106), Expect = 1e-05
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLL---NILTGYKTSGT--EGSITINGHERNLS 97
+L ++ + GE+ I+GPSG+GKSTLL N L TSG + +N + +
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI-TSGDLIVDGLKVNDPKVDER 73
Query: 98 QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
R+ + + Q L +LT E NV + +K + R L
Sbjct: 74 LIRQEAGMVFQQFYLFPHLTALE--NVMFGPLRVRGASKEEAEKQAREL 120
Score = 41.2 bits (97), Expect = 2e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
+L ++ + GE+ I+GPSG+GKSTLL
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLL 44
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein
PhnL. Members of this family are the PhnL protein of
C-P lyase systems for utilization of phosphonates.
These systems resemble phosphonatase-based systems in
having a three component ABC transporter, where
TIGR01097 is the permease, TIGR01098 is the
phosphonates binding protein, and TIGR02315 is the
ATP-binding cassette (ABC) protein. They differ,
however, in having, typically, ten or more additional
genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a
transporter per se.
Length = 224
Score = 44.3 bits (105), Expect = 1e-05
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE 93
+LK+VS + +GE A+ GPSGAGKSTLL L Y G I + HE
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD--SGRILVR-HE 70
Score = 42.4 bits (100), Expect = 7e-05
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+LK+VS + +GE A+ GPSGAGKSTLL L
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSL 54
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 44.9 bits (107), Expect = 2e-05
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
P +K ILK +S G ++G +GAGKSTLL I+ G NG E +
Sbjct: 15 PPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-------FNG-EARPAP 66
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 134
K+ Y+ Q+ QL TV E NV + KD
Sbjct: 67 GIKVG-YLPQEPQLDPTKTVRE--NVEEGVAEIKDA 99
Score = 39.1 bits (92), Expect = 0.001
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI 89
+K ++ +S +L G + ++GP+GAGKSTL ++TG + + G+I I
Sbjct: 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS-GTIKI 381
Score = 38.0 bits (89), Expect = 0.004
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+K ++ +S +L G + ++GP+GAGKSTL ++TG
Sbjct: 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370
Score = 37.6 bits (88), Expect = 0.004
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
K ILK +S G ++G +GAGKSTLL I+ G
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 53
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+
extrusion without mechanically coupled proton or K+
uptake. NatB possess six putative membrane spanning
regions at its C-terminus. In B. subtilis, NatAB is
inducible by agents such as ethanol and protonophores,
which lower the proton-motive force across the
membrane. The closest sequence similarity to NatA is
exhibited by DrrA of the two-component daunorubicin-
and doxorubicin-efflux system. Hence, the functional
NatAB is presumably assembled with two copies of a
single ATP-binding protein and a single integral
membrane protein.
Length = 218
Score = 44.3 bits (105), Expect = 2e-05
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 38 EPNEKTI--LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
+KT+ + VS ++ GE+T ++GP+GAGK+T L +L G G T++G
Sbjct: 12 RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL-LEPDAGFATVDG 66
Score = 42.0 bits (99), Expect = 9e-05
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ VS ++ GE+T ++GP+GAGK+T L +L G
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG 53
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 43.9 bits (105), Expect = 2e-05
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 196 SGELTAIMGPSGAGKSTLLNILTGYKILR 224
G+ + ++G SG GKSTLLN L +L
Sbjct: 84 KGKTSVLVGQSGVGKSTLLNALLPELVLA 112
Score = 43.2 bits (103), Expect = 3e-05
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTG 77
G+ + ++G SG GKSTLLN L
Sbjct: 84 KGKTSVLVGQSGVGKSTLLNALLP 107
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 45.1 bits (107), Expect = 2e-05
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
+ +LK ++ L GE+ A++GPSG+GKST+ +L T G + ++G
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP-TGGQVLLDG 542
Score = 40.9 bits (96), Expect = 4e-04
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL-------TGYKILRQLWLLEYSHKD 235
+ +LK ++ L GE+ A++GPSG+GKST+ +L G +L + L++Y H
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552
Query: 236 L 236
L
Sbjct: 553 L 553
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 44.7 bits (106), Expect = 2e-05
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
L ++ +R GE A++GPSGAGKSTL +L + G I ++G
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP-QSGRILLDG 401
Score = 43.2 bits (102), Expect = 6e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
L ++ +R GE A++GPSGAGKSTL +L
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL 386
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 44.1 bits (104), Expect = 2e-05
Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
E T L +SG +R+GE+ ++GP+GAGKSTLL + G TSG GSI G
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSG-SGSIQFAG 59
Score = 42.1 bits (99), Expect = 9e-05
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
N + E T L +SG +R+GE+ ++GP+GAGKSTLL + G
Sbjct: 7 NDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 47
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 44.0 bits (104), Expect = 2e-05
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK----TSGTEGSITINGH 92
N+K L SVS E+TA++GPSG+GKSTLL + GSI NGH
Sbjct: 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGH 72
Score = 39.0 bits (91), Expect = 0.001
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
YN+ K L SVS E+TA++GPSG+GKSTLL
Sbjct: 15 YNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLL 48
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form
(CCALD), the milder adult form, adrenomyeloneuropathy
(AMN), and variants without neurologic involvement
(i.e. asymptomatic).
Length = 166
Score = 43.3 bits (103), Expect = 2e-05
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER 94
P+ + +LK +S ++ G+ I GPSG GKS+L L G G+ G I + E
Sbjct: 11 PDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS-GRIGMPEGED 65
Score = 38.7 bits (91), Expect = 7e-04
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLW 227
+ +LK +S ++ G+ I GPSG GKS+L L G LW
Sbjct: 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG------LW 51
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 43.7 bits (103), Expect = 2e-05
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ----FR 100
L VS + GE+ ++G +GAGK+TLL L G T G I +G + Q R
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG-DPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR 157
+ + + ++ + +TVEE N+A + R V LF R QR
Sbjct: 80 EAVAIVPEGRRVFSRMTVEE--NLAMGGFFAERDQFQERIKWVYELFPRLHERRIQR 134
Score = 35.6 bits (82), Expect = 0.013
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 176 AMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
A Y +I L VS + GE+ ++G +GAGK+TLL L G
Sbjct: 13 AHYGKIQ---ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG 53
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 43.7 bits (103), Expect = 3e-05
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
NE+ + + + +GE + G +GAGK+TLL +L G + G I I+G
Sbjct: 22 NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES-GQIQIDGKTATRGDR 80
Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATAL 128
+ Y+ L A+L+ E ++ L
Sbjct: 81 SRFMAYLGHLPGLKADLSTLENLHFLCGL 109
Score = 32.9 bits (75), Expect = 0.093
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 193 RLRSGELTAIMGPSGAGKSTLLNILTG 219
+ +GE + G +GAGK+TLL +L G
Sbjct: 33 HVDAGEALLVQGDNGAGKTTLLRVLAG 59
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 44.1 bits (105), Expect = 3e-05
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 58 TAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH 92
TAI G SGAGK++L+N ++G T +G I +NG
Sbjct: 27 TAIFGRSGAGKTSLINAISGL-TRPQKGRIVLNGR 60
Score = 35.2 bits (82), Expect = 0.019
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 200 TAIMGPSGAGKSTLLNILTG 219
TAI G SGAGK++L+N ++G
Sbjct: 27 TAIFGRSGAGKTSLINAISG 46
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 43.5 bits (103), Expect = 3e-05
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-----HE 93
P EK L +V+ + GE ++G +G+GKSTL+ L G T G I I+G +
Sbjct: 17 PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL-LKPTSGKIIIDGVDITDKK 75
Query: 94 RNLSQFRK 101
LS RK
Sbjct: 76 VKLSDIRK 83
Score = 34.3 bits (79), Expect = 0.041
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
EK L +V+ + GE ++G +G+GKSTL+ L G
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG 55
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 44.0 bits (104), Expect = 3e-05
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 5 EYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPS 64
E++N NN N N+ + + +N IL +S ++ T I+G S
Sbjct: 457 EFINKKKRTELNNLNGDIVINDVSYSYGYGSN-------ILSDISLTIKMNSKTTIVGMS 509
Query: 65 GAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF-----RKLSCYIMQD 109
G+GKSTL +L G+ + + G I +NG +L R+ Y+ Q+
Sbjct: 510 GSGKSTLAKLLVGFFQARS-GEILLNGF--SLKDIDRHTLRQFINYLPQE 556
Score = 35.5 bits (82), Expect = 0.021
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
IL +S ++ T I+G SG+GKSTL +L G+
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF 523
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 43.4 bits (102), Expect = 4e-05
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 20/123 (16%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
E +LK VS + +G++ +I+G SG+GKST L + + +EGSI +NG NL + +
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGSIVVNGQTINLVRDK 75
Query: 101 KLSCYIMQDNQL------------HANL----TVEEAMNVATALKLGKDLTKA-ARKDVV 143
+ NQL H NL TV E + A LG L+K AR+ V
Sbjct: 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKQEARERAV 133
Query: 144 RTL 146
+ L
Sbjct: 134 KYL 136
Score = 37.3 bits (86), Expect = 0.004
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 172 LLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
L + ++ R E +LK VS + +G++ +I+G SG+GKST L
Sbjct: 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFL 48
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 43.5 bits (103), Expect = 4e-05
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING------HERNLSQ 98
+ S + GE+ IMG SG+GKSTL+ +L T G I ++G L +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL-IEPTRGEILVDGKDIAKLSAAELRE 102
Query: 99 FR--KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
R K+S + Q L + TV E NVA L++ + + KA R++
Sbjct: 103 LRRKKIS-MVFQSFALLPHRTVLE--NVAFGLEV-QGVPKAEREERAL 146
Score = 37.7 bits (88), Expect = 0.003
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 174 ALAMYNR------IHEKTI----LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
AL + ++ I +KT + S + GE+ IMG SG+GKSTL+ +L
Sbjct: 21 ALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR 76
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 42.2 bits (100), Expect = 4e-05
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTG 77
G+ + + G SG GKSTLLN L
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALLP 57
Score = 42.2 bits (100), Expect = 4e-05
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 196 SGELTAIMGPSGAGKSTLLNILTG 219
G+ + + G SG GKSTLLN L
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALLP 57
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 43.5 bits (103), Expect = 4e-05
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
+ L++V+ L+ G++ I GP+G+GKSTLL+++ + +EG I H+ L++
Sbjct: 326 TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV-SEGDIRF--HDIPLTKL 382
Query: 100 R 100
+
Sbjct: 383 Q 383
Score = 41.6 bits (98), Expect = 2e-04
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ 225
+ L++V+ L+ G++ I GP+G+GKSTLL++ I R
Sbjct: 326 TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSL-----IQRH 364
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 43.2 bits (102), Expect = 5e-05
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 35 NNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--- 91
+N E EK L V+ ++ GE I+G +G+GKST+ + +EG + ++G
Sbjct: 16 SNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP-SEGKVYVDGLDT 74
Query: 92 -HERNLSQFRKLSCYIMQ--DNQLHANLTVEE 120
E NL R + + Q DNQ+ A + VEE
Sbjct: 75 SDEENLWDIRNKAGMVFQNPDNQIVATI-VEE 105
Score = 32.8 bits (75), Expect = 0.14
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTL 213
EK L V+ ++ GE I+G +G+GKST+
Sbjct: 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTI 52
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 42.7 bits (100), Expect = 5e-05
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+Y I++K ILK ++ ++ + + IMGPSG+GKSTLL +L
Sbjct: 16 LYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL 56
Score = 41.6 bits (97), Expect = 1e-04
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
N+K ILK ++ ++ + + IMGPSG+GKSTLL +L
Sbjct: 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL 56
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 42.6 bits (101), Expect = 6e-05
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 17/74 (22%)
Query: 48 VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107
VS L GE+ I+G SG+GK+TLLN L+ + + G + Y M
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSA-RLAPDAGEVH----------------YRM 67
Query: 108 QDNQLHANLTVEEA 121
+D QL + EA
Sbjct: 68 RDGQLRDLYALSEA 81
Score = 41.8 bits (99), Expect = 1e-04
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
VS L GE+ I+G SG+GK+TLLN L+
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSA 54
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 42.9 bits (101), Expect = 7e-05
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKLSCYIMQDNQLHANLTV 118
++GPSG GK+TLL +L G++ GSI ++G + N+ + + Q L ++TV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQP-DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTV 59
Query: 119 EEAMNVATALKLGKDLTKAARKDVVR 144
EE NVA LK+ K + +A K V
Sbjct: 60 EE--NVAFGLKMRK-VPRAEIKPRVL 82
Score = 32.1 bits (73), Expect = 0.23
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 202 IMGPSGAGKSTLLNILTGY 220
++GPSG GK+TLL +L G+
Sbjct: 1 LLGPSGCGKTTLLRLLAGF 19
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 43.5 bits (102), Expect = 7e-05
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--ERN 95
EP+ + + ++ ++TA +G +GAGK+T L+ILTG T G++ + G E N
Sbjct: 939 EPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL-LPPTSGTVLVGGKDIETN 997
Query: 96 LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 129
L R+ Q N L +LTV E + LK
Sbjct: 998 LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK 1031
Score = 34.6 bits (79), Expect = 0.044
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQFRKLSCYIMQD 109
+R GE ++G +GAGK+T +LTG T+ T G T+ G N+S + Y Q
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG-DTTVTSGDATVAGKSILTNISDVHQNMGYCPQF 2020
Query: 110 NQLHANLTVEEAMNVATALK 129
+ + LT E + + L+
Sbjct: 2021 DAIDDLLTGREHLYLYARLR 2040
Score = 31.9 bits (72), Expect = 0.34
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 198 ELTAIMGPSGAGKSTLLNILTG 219
++TA +G +GAGK+T L+ILTG
Sbjct: 957 QITAFLGHNGAGKTTTLSILTG 978
Score = 29.6 bits (66), Expect = 1.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTG 219
+R GE ++G +GAGK+T +LTG
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG 1987
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 42.5 bits (100), Expect = 8e-05
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----- 93
P EK L ++S L G A++G +G+GKSTL+ + G+ITI G+
Sbjct: 17 PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP-SSGTITIAGYHITPET 75
Query: 94 --RNLSQFRKLSCYIMQ--DNQLHANLTVEEAM 122
+NL + RK + Q + QL N +++
Sbjct: 76 GNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVE 108
Score = 32.5 bits (74), Expect = 0.16
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
EK L ++S L G A++G +G+GKSTL+
Sbjct: 19 EKKGLDNISFELEEGSFVALVGHTGSGKSTLM 50
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 42.6 bits (101), Expect = 9e-05
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 23/124 (18%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKS----TLLNILTGYKTSGTEGSITINGH---- 92
+K +S + +GE A++G SG+GKS ++L +L + GSI +G
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81
Query: 93 --ERNLSQFR--KLSCYIMQD-----NQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
ER L R K+ I Q+ N LH T+ + +A L+L + L++AA +
Sbjct: 82 ASERQLRGVRGNKIG-MIFQEPMTSLNPLH---TIGK--QLAEVLRLHRGLSRAAARARA 135
Query: 144 RTLF 147
L
Sbjct: 136 LELL 139
Score = 37.3 bits (87), Expect = 0.005
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 173 LALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKS-TLLNIL 217
L++A + +K +S + +GE A++G SG+GKS T L+IL
Sbjct: 12 LSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSIL 57
Score = 36.9 bits (86), Expect = 0.008
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING------HERNLSQ 98
+ +S LR G+ ++G SG+GKSTL L S +G I +G + +
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS--QGEIRFDGQDIDGLSRKEMRP 360
Query: 99 FRKLSCYIMQD--NQLHANLTVEEAMNVATALKL-GKDLTKAARKDVVR 144
R+ + QD L +TV + + L++ L+ A R V
Sbjct: 361 LRRRMQVVFQDPYGSLSPRMTVGQI--IEEGLRVHEPKLSAAERDQRVI 407
Score = 35.3 bits (82), Expect = 0.021
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224
+ +S LR G+ ++G SG+GKSTL G +LR
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTL-----GLALLR 335
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 42.1 bits (99), Expect = 9e-05
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---------- 92
T+L ++ + +GE A++GPSG+GKST+L IL + EG I + G
Sbjct: 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI-DEGQIQVEGEQLYHMPGRNG 72
Query: 93 ------ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG 131
E++L Q R + Q L + TV + + A L LG
Sbjct: 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG 117
Score = 38.7 bits (90), Expect = 0.001
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
R T+L ++ + +GE A++GPSG+GKST+L IL
Sbjct: 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRIL 46
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 42.3 bits (100), Expect = 9e-05
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL-------NILTGYKTSGTEGSITINGHE 93
+K L +S R+ +TA +GPSG GKSTLL +++ + EG I ++G
Sbjct: 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR---IEGEIRLDGQN 93
Score = 41.2 bits (97), Expect = 2e-04
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
+K L +S R+ +TA +GPSG GKSTLL
Sbjct: 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLL 68
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 42.6 bits (101), Expect = 9e-05
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
N + ++ VS + G+ AI+GP+GAGKSTL+N+L G I I+G
Sbjct: 345 DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP-QSGRILIDG 396
Score = 39.2 bits (92), Expect = 0.001
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
++ VS + G+ AI+GP+GAGKSTL+N+L
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 42.6 bits (100), Expect = 9e-05
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
N + VS ++G+ AI+GP+GAGK+TL+N+L T G I I+G
Sbjct: 345 ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-TVGQILIDG 396
Score = 38.7 bits (90), Expect = 0.002
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNIL 217
VS ++G+ AI+GP+GAGK+TL+N+L
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLL 381
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 250
Score = 42.2 bits (99), Expect = 1e-04
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 10/60 (16%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL-------NILTGYKTSGTEGSITINGHE 93
EK +K+V+ ++ ++TAI+GPSG GK+TLL + + G++ EG I G +
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR---VEGKIYFKGQD 71
Score = 39.9 bits (93), Expect = 6e-04
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
EK +K+V+ ++ ++TAI+GPSG GK+TLL
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLL 46
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 41.9 bits (99), Expect = 1e-04
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG----YKTSGTEGSITINGH 92
LK+++ + ++TA +GPSG GKSTLL Y EG I ++G
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGE 80
Score = 41.1 bits (97), Expect = 2e-04
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
Y + H LK+++ + ++TA +GPSG GKSTLL
Sbjct: 23 YGKFHA---LKNINLDIAKNQVTAFIGPSGCGKSTLLRTF 59
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 40.8 bits (95), Expect = 1e-04
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLH 113
GE+ I+GP G+GK+TL L G I I+G E L + I+ +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG-EDILEEVLDQLLLIIVGGKKA 59
Query: 114 ANLTVEEAMNV-ATALKLGKDL 134
+ A A KL D+
Sbjct: 60 SGSGELRLRLALALARKLKPDV 81
Score = 37.0 bits (85), Expect = 0.002
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 196 SGELTAIMGPSGAGKSTLLNILTGY 220
GE+ I+GP G+GK+TL L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE 25
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 42.3 bits (100), Expect = 1e-04
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 55 GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCYIMQD 109
G + A++G +GAGKST++ +LTG T GSI G E SQ + I Q+
Sbjct: 30 GRVMALVGENGAGKSTMMKVLTGIYTRDA-GSILYLGKEVTFNGPKSSQEAGIGI-IHQE 87
Query: 110 NQLHANLTVEE 120
L LT+ E
Sbjct: 88 LNLIPQLTIAE 98
Score = 36.9 bits (86), Expect = 0.006
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 197 GELTAIMGPSGAGKSTLLNILTG 219
G + A++G +GAGKST++ +LTG
Sbjct: 30 GRVMALVGENGAGKSTMMKVLTG 52
Score = 35.4 bits (82), Expect = 0.019
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
+ VS LR GE+ + G GAG++ L+ +L G T G +T++GHE
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR-TSGYVTLDGHE 315
Score = 29.2 bits (66), Expect = 1.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ VS LR GE+ + G GAG++ L+ +L G
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYG 300
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 42.0 bits (99), Expect = 1e-04
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 21/116 (18%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKST----LLNILTGYKTSGTEGSITING---HE 93
++K++S LR GE ++G SG+GKST LL ++ ++G I +G H
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI------NSQGEIWFDGQPLHN 351
Query: 94 RNLSQ---FRKLSCYIMQD--NQLHANLTVEEAMNVATALKL-GKDLTKAARKDVV 143
N Q R + QD + L+ L V + + L++ L+ A R+ V
Sbjct: 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQI--IEEGLRVHQPTLSAAQREQQV 405
Score = 37.8 bits (88), Expect = 0.004
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224
++K++S LR GE ++G SG+GKST TG +LR
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKST-----TGLALLR 334
Score = 33.9 bits (78), Expect = 0.073
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 173 LALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKS-TLLNIL 217
L++A + +T++ VS ++ +GE A++G SG+GKS T L+IL
Sbjct: 11 LSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL 56
Score = 31.2 bits (71), Expect = 0.54
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 22/124 (17%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKS-TLLNILTGYKTSG---TEGSITINGH--- 92
+T++ VS ++ +GE A++G SG+GKS T L+IL + G I +G
Sbjct: 20 TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79
Query: 93 ---ERNLSQFR--KLSCYIMQD-----NQLHANLTVEEAMNVATALKLGKDLTKAARKDV 142
E+ L R K++ I Q+ N LH T+E+ + +L G +AAR ++
Sbjct: 80 HASEQTLRGVRGNKIA-MIFQEPMVSLNPLH---TLEKQLYEVLSLHRGMR-REAARGEI 134
Query: 143 VRTL 146
+ L
Sbjct: 135 LNCL 138
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 41.9 bits (99), Expect = 2e-04
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
L VS L G+ A++G SG GKSTL +LT +T T G + G +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-TGGELYYQGQD 78
Score = 33.8 bits (78), Expect = 0.055
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
L VS L G+ A++G SG GKSTL +LT
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLT 62
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 41.9 bits (99), Expect = 2e-04
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---ERNL 96
E L++++ ++ +G+ A++G SG+GKST+ N+LT Y EG I ++GH + L
Sbjct: 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID--EGEILLDGHDLRDYTL 412
Query: 97 SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK---LGKDLTKAAR 139
+ R + Q+ L N T+ A N+A A + + +AAR
Sbjct: 413 ASLRNQVALVSQNVHLF-NDTI--ANNIAYARTEQYSREQIEEAAR 455
Score = 35.8 bits (83), Expect = 0.015
Identities = 14/36 (38%), Positives = 27/36 (75%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
E L++++ ++ +G+ A++G SG+GKST+ N+LT
Sbjct: 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT 390
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 41.7 bits (97), Expect = 2e-04
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 8 NTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKT 43
NTN NTNNTN + + NTNTNTN+N N N
Sbjct: 318 NTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNA 353
Score = 30.2 bits (67), Expect = 0.94
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 2 NSQEYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTIL 45
N+ + NTN N+N N+N ++NNN + I+
Sbjct: 327 NTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNSSASAII 370
Score = 28.2 bits (62), Expect = 4.9
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 15 TNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKST 70
+ NTN NTNTNTN N P++ T + S + A G S ++
Sbjct: 309 STNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNS 364
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 41.6 bits (99), Expect = 2e-04
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
P +K ILK +S G ++G +GAGKSTLL I+ G G E +
Sbjct: 17 PPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-------FEG-EARPAP 68
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 134
K+ Y+ Q+ QL TV E NV + K
Sbjct: 69 GIKVG-YLPQEPQLDPEKTVRE--NVEEGVAEVKAA 101
Score = 35.9 bits (84), Expect = 0.016
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
K ILK +S G ++G +GAGKSTLL I+ G
Sbjct: 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 55
Score = 35.5 bits (83), Expect = 0.020
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSGTEGSITI 89
I+GP+GAGKSTL ++TG + G+I I
Sbjct: 355 IIGPNGAGKSTLFKMITG-QEQPDSGTIKI 383
Score = 35.1 bits (82), Expect = 0.030
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 202 IMGPSGAGKSTLLNILTG 219
I+GP+GAGKSTL ++TG
Sbjct: 355 IIGPNGAGKSTLFKMITG 372
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 40.9 bits (96), Expect = 2e-04
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ--- 98
+L +VS + GE ++G SG GKSTL +L G + +G+++ G ++L Q
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-KPAQGTVSFRG--QDLYQLDR 80
Query: 99 -----FRKLSCYIMQD--NQLHANLTVEEAMNVATALKLGKDLTKAARK 140
FR+ + QD + ++ +TV + + L+ L ++ +K
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQI--IGEPLRHLTSLDESEQK 127
Score = 39.0 bits (91), Expect = 0.001
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+L +VS + GE ++G SG GKSTL +L G
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG 59
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 41.1 bits (97), Expect = 2e-04
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITING 91
+ VS +R GE+ IMG SG+GKSTLL + + T G + I+G
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDG 85
Score = 37.6 bits (88), Expect = 0.003
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 179 NRIHEKT----ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
I +KT + VS +R GE+ IMG SG+GKSTLL +
Sbjct: 28 EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINR 72
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 41.0 bits (96), Expect = 2e-04
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
K ++ +S + SGE ++GP+GAGKST+ ++ G TS G IT+ G
Sbjct: 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM-TSPDAGKITVLG 102
Score = 35.6 bits (82), Expect = 0.016
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
K ++ +S + SGE ++GP+GAGKST+ ++ G
Sbjct: 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG 89
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase,
contains alpha, beta, and gamma chains. In older
literature, the complex of alpha, beta, and gamma
chains was termed component C, while this single chain
protein was termed methyl coenzyme M reductase system
component A2 [Energy metabolism, Methanogenesis].
Length = 520
Score = 41.3 bits (97), Expect = 3e-04
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SGTEGSI 87
K +LK++S + GE+ I+G SGAGKS L+++L G T G I
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI 59
Score = 40.6 bits (95), Expect = 4e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221
K +LK++S + GE+ I+G SGAGKS L+++L G
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50
Score = 34.4 bits (79), Expect = 0.043
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 41 EKTILKSVSG---RLRSGELTAIMGPSGAGKSTLLNILTG 77
++ ++K+V ++ GE+ I+G SGAGK+TL I+ G
Sbjct: 293 DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG 332
Score = 34.4 bits (79), Expect = 0.043
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 183 EKTILKSVSG---RLRSGELTAIMGPSGAGKSTLLNILTG 219
++ ++K+V ++ GE+ I+G SGAGK+TL I+ G
Sbjct: 293 DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG 332
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 40.1 bits (95), Expect = 3e-04
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
++ VS +R+GE+ I G G G++ L L G G IT++G R
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG-LRPPASGEITLDGKPVTRRSPRD 71
Score = 32.0 bits (74), Expect = 0.16
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++ VS +R+GE+ I G G G++ L L G
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG 48
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 40.6 bits (95), Expect = 3e-04
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS---------QFRKLSC 104
GE ++GPSGAGKS+LL +L + + G++ I G+ + S R+
Sbjct: 27 EGETLVLLGPSGAGKSSLLRVLNLLEMPRS-GTLNIAGNHFDFSKTPSDKAIRDLRRNVG 85
Query: 105 YIMQDNQLHANLTVEEAMNVA--TALKLGKDLTKAARKDVVRTL 146
+ Q L +LTV+E + A L L KD A + +++ L
Sbjct: 86 MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRL 129
Score = 34.8 bits (80), Expect = 0.026
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 196 SGELTAIMGPSGAGKSTLLNIL 217
GE ++GPSGAGKS+LL +L
Sbjct: 27 EGETLVLLGPSGAGKSSLLRVL 48
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 41.3 bits (97), Expect = 3e-04
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 51 RLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---ERNLSQFRKLSCYI 106
++ GEL ++G +G+GKSTL +LTG Y+ G I ++G L +RKL +
Sbjct: 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPVSAEQLEDYRKLFSAV 402
Query: 107 MQDNQL 112
D L
Sbjct: 403 FSDYHL 408
Score = 35.5 bits (82), Expect = 0.021
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 193 RLRSGELTAIMGPSGAGKSTLLNILTG 219
++ GEL ++G +G+GKSTL +LTG
Sbjct: 345 TIKRGELVFLIGGNGSGKSTLAMLLTG 371
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 40.5 bits (95), Expect = 3e-04
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT----GYKTSGTEGSITINGHE 93
EK L V + +TA +GPSG GKST L L G IT++G +
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED 87
Score = 37.8 bits (88), Expect = 0.003
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
EK L V + +TA +GPSG GKST L L
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCL 65
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 40.4 bits (95), Expect = 3e-04
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNL 96
LK VS + GE AI+G +G+GKSTL +L G G+IT+ G E +
Sbjct: 18 AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL-LLPEAGTITVGGMVLSEETV 76
Query: 97 SQFRKLSCYIMQ--DNQLHANLTVEEAMNVATAL 128
R+ + Q DNQ TV++ +VA L
Sbjct: 77 WDVRRQVGMVFQNPDNQF-VGATVQD--DVAFGL 107
Score = 34.2 bits (79), Expect = 0.043
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
LK VS + GE AI+G +G+GKSTL +L G
Sbjct: 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG 55
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 40.5 bits (95), Expect = 4e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 48 VSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITINGHERNL 96
VS L GE+ I+G SG+GK+TLL ++G +GT +G R+L
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDL 75
Score = 39.7 bits (93), Expect = 7e-04
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
VS L GE+ I+G SG+GK+TLL ++G
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISG 54
>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 40.6 bits (96), Expect = 4e-04
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTS------GT-----EGSITINGH 92
LR G I+G GKS+LLN L G + GT E I +NG
Sbjct: 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGI 265
Score = 37.2 bits (87), Expect = 0.006
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 193 RLRSGELTAIMGPSGAGKSTLLNILTGYKI 222
LR G I+G GKS+LLN L G
Sbjct: 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDR 242
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 40.7 bits (96), Expect = 4e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTG 77
L G+ A++G SG GKSTL+N L G
Sbjct: 192 LSGGKTVALLGSSGVGKSTLVNALLG 217
Score = 40.7 bits (96), Expect = 4e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTG 219
L G+ A++G SG GKSTL+N L G
Sbjct: 192 LSGGKTVALLGSSGVGKSTLVNALLG 217
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 40.6 bits (95), Expect = 4e-04
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 171 VLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+L + + R+ E+ +L++++ ++ G++ A++G SGAGK+TLL ++ G
Sbjct: 383 ILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG 431
Score = 39.8 bits (93), Expect = 9e-04
Identities = 14/37 (37%), Positives = 29/37 (78%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
E+ +L++++ ++ G++ A++G SGAGK+TLL ++ G
Sbjct: 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG 431
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 40.2 bits (94), Expect = 4e-04
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 48 VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107
VS L GE+ I+G SG+GKSTLL L G G+ T YIM
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH-GTAT----------------YIM 64
Query: 108 QDNQLHANLTVEEA 121
+ + EA
Sbjct: 65 RSGAELELYQLSEA 78
Score = 37.9 bits (88), Expect = 0.003
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
VS L GE+ I+G SG+GKSTLL L G
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAG 51
>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 40.5 bits (96), Expect = 4e-04
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 51 RLRSGELTAIMGPSGAGKSTLLNILTGYK----TS--GT-----EGSITINGH 92
LR G I G GKS+LLN L G + T GT E I ++G
Sbjct: 211 ILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI 263
Score = 36.6 bits (86), Expect = 0.008
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 193 RLRSGELTAIMGPSGAGKSTLLNILTGY 220
LR G I G GKS+LLN L G
Sbjct: 211 ILREGLKVVIAGRPNVGKSSLLNALLGE 238
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 40.2 bits (94), Expect = 4e-04
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQF 99
+L+++S + G+ ++G +G+GKSTLL+ + TEG I I+G N L ++
Sbjct: 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAF--LRLLNTEGDIQIDGVSWNSVPLQKW 75
Query: 100 RK 101
RK
Sbjct: 76 RK 77
Score = 32.1 bits (73), Expect = 0.21
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+L+++S + G+ ++G +G+GKSTLL+
Sbjct: 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAF 50
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 40.0 bits (94), Expect = 4e-04
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 54 SGELTAIMGPSGAGKSTL---LNILTGYKTSGTEGSITINGHERNLSQ 98
GE ++GPSGAGKS+L LN+L ++ G++ I G+ + S+
Sbjct: 27 QGETLVLLGPSGAGKSSLLRVLNLLEMPRS----GTLNIAGNHFDFSK 70
Score = 36.5 bits (85), Expect = 0.006
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 196 SGELTAIMGPSGAGKSTLLNIL 217
GE ++GPSGAGKS+LL +L
Sbjct: 27 QGETLVLLGPSGAGKSSLLRVL 48
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 40.5 bits (95), Expect = 5e-04
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLS 97
L +V+ ++R + A+MG +GAGKSTLL L G Y+ GSI G E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFK 65
Score = 36.2 bits (84), Expect = 0.012
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L +V+ ++R + A+MG +GAGKSTLL L G
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFG 46
Score = 27.8 bits (62), Expect = 6.3
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95
++ VS L GE+ I G GA ++ ++ L G + G+IT++G + N
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS-AGTITLHGKKIN 313
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 39.7 bits (93), Expect = 5e-04
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITI 89
+L++VS + +GE + GPSG+GKSTLL L Y EG I +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD--EGQILV 70
Score = 38.2 bits (89), Expect = 0.002
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKI 222
+L++VS + +GE + GPSG+GKSTLL L Y
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP 63
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 39.8 bits (93), Expect = 5e-04
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
+E +IL V ++ GE A++G SG+GKSTLL IL G G+ G +++ G L Q
Sbjct: 21 HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-DGSSGEVSLVGQ--PLHQ 76
Score = 39.4 bits (92), Expect = 7e-04
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
HE +IL V ++ GE A++G SG+GKSTLL IL G
Sbjct: 21 HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG 58
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 39.8 bits (93), Expect = 6e-04
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--------ERNL 96
+ + GE+ IMG SG+GKST + +L T G I I+G E
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL-IEPTAGQIFIDGENIMKQSPVELRE 67
Query: 97 SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
+ +K+ + Q L ++T+ + N + +L + RK+ L
Sbjct: 68 VRRKKIG-MVFQQFALFPHMTILQ--NTSLGPELLG-WPEQERKEKALEL 113
Score = 34.8 bits (80), Expect = 0.029
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+ + GE+ IMG SG+GKST + +L
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRML 39
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 39.8 bits (93), Expect = 6e-04
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY----KTSGTEGSITINGHE-----RN 95
LK VS + +TA++GPSG GKST L L K + +GS+ ++G + N
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 96 LSQFRK 101
L + RK
Sbjct: 121 LVELRK 126
Score = 35.2 bits (81), Expect = 0.022
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
LK VS + +TA++GPSG GKST L L
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCL 91
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 40.2 bits (95), Expect = 6e-04
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTG 77
+ G++T I+GP+G GK+T + IL+G
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSG 121
Score = 40.2 bits (95), Expect = 6e-04
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTG 219
+ G++T I+GP+G GK+T + IL+G
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSG 121
Score = 37.1 bits (87), Expect = 0.006
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN 90
L+ G + GE+ I+GP+G GK+T +L G EG +
Sbjct: 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP-DEGEVDPE 399
Score = 36.7 bits (86), Expect = 0.008
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L+ G + GE+ I+GP+G GK+T +L G
Sbjct: 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAG 387
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 40.4 bits (95), Expect = 6e-04
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 73
LK+++ + G T I G SG+GKSTL+N
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLIN 652
Score = 40.4 bits (95), Expect = 6e-04
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
LK+++ + G T I G SG+GKSTL+N
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLIN 652
Score = 28.1 bits (63), Expect = 5.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTL 71
LK++ + +L I G SG+GKS+L
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38
Score = 28.1 bits (63), Expect = 5.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTL 213
LK++ + +L I G SG+GKS+L
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 39.7 bits (93), Expect = 7e-04
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI 87
++ +L VS L+ G++ ++GP+GAGKSTL+ ++ G + EG I
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL-VAPDEGVI 61
Score = 38.2 bits (89), Expect = 0.002
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++ +L VS L+ G++ ++GP+GAGKSTL+ ++ G
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG 52
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with
NodJ to export a nodulation signal molecule. This model
does not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 39.5 bits (92), Expect = 7e-04
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
+K ++ +S + GE ++GP+GAGKST+ +L G S G IT+ G
Sbjct: 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM-ISPDRGKITVLG 65
Score = 34.1 bits (78), Expect = 0.049
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+K ++ +S + GE ++GP+GAGKST+ +L G
Sbjct: 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG 52
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 39.9 bits (94), Expect = 8e-04
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
+ K+++ L +GE AI+G +G GK+TLL L G
Sbjct: 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG 367
Score = 39.9 bits (94), Expect = 8e-04
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ K+++ L +GE AI+G +G GK+TLL L G
Sbjct: 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG 367
Score = 30.2 bits (69), Expect = 1.00
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 62 GPSGAGKSTLLNILTGYKTSGTEGSITINGHER--NLSQ-------FRKLSCYIMQDNQL 112
G +G GKST + IL G + G+++++ +ER L Q F L IM +L
Sbjct: 34 GANGCGKSTFMKILGGDLEP-SAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTEL 92
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 39.7 bits (93), Expect = 8e-04
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 55 GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLSQFRKLSCYIMQDNQ 111
G + ++GPSG GK+T+L ++ G + TEG I I+G R++ Q R + C + Q
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLE-KPTEGQIFIDGEDVTHRSIQQ-RDI-CMVFQSYA 88
Query: 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
L ++++ E NV LK+ + K RK V+
Sbjct: 89 LFPHMSLGE--NVGYGLKMLG-VPKEERKQRVK 118
Score = 29.3 bits (66), Expect = 1.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 197 GELTAIMGPSGAGKSTLLNILTG 219
G + ++GPSG GK+T+L ++ G
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAG 54
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 39.4 bits (92), Expect = 0.001
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
+K ++ +S ++ GE ++GP+GAGK+T L +L G T GSI++ G
Sbjct: 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-THPDAGSISLCG 68
Score = 37.9 bits (88), Expect = 0.003
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
R +K ++ +S ++ GE ++GP+GAGK+T L +L G
Sbjct: 16 RYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG 55
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 38.9 bits (91), Expect = 0.001
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY----KTSGTEGSITING-----HERN 95
LK ++ + ++TA++GPSG GKST L L + EG + ++G + +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 96 LSQFRK 101
++Q RK
Sbjct: 79 VNQLRK 84
Score = 38.1 bits (89), Expect = 0.002
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
LK ++ + ++TA++GPSG GKST L L
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTL 49
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 39.7 bits (94), Expect = 0.001
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKILRQ 225
LK+V + G+ T + G SG+GKSTL+N L YK L +
Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLINETL--YKALAR 662
Score = 37.4 bits (88), Expect = 0.006
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 73
LK+V + G+ T + G SG+GKSTL+N
Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLIN 653
>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase. TrmE (MnmE,
ThdF, MSS1) is a 3-domain protein found in bacteria and
eukaryotes. It controls modification of the uridine at
the wobble position (U34) of tRNAs that read codons
ending with A or G in the mixed codon family boxes.
TrmE contains a GTPase domain that forms a canonical
Ras-like fold. It functions a molecular switch GTPase,
and apparently uses a conformational change associated
with GTP hydrolysis to promote the tRNA modification
reaction, in which the conserved cysteine in the
C-terminal domain is thought to function as a catalytic
residue. In bacteria that are able to survive in
extremely low pH conditions, TrmE regulates
glutamate-dependent acid resistance.
Length = 159
Score = 38.2 bits (90), Expect = 0.001
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 53 RSGELTAIMGPSGAGKSTLLNILTGYKTS------GT-----EGSITINGH 92
R G I G GKS+LLN L G + GT E I + G
Sbjct: 1 REGIKVVIAGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEEEIDLGGI 51
Score = 33.6 bits (78), Expect = 0.033
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 195 RSGELTAIMGPSGAGKSTLLNILTGYKI 222
R G I G GKS+LLN L G
Sbjct: 1 REGIKVVIAGKPNVGKSSLLNALAGRDR 28
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 39.1 bits (91), Expect = 0.001
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH-----ERNLSQF 99
LK ++ ++ GE+TAI+G +GAGKSTL L G + G I +G + L +
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGI-LKPSSGRILFDGKPIDYSRKGLMKL 80
Query: 100 RKLSCYIMQ--DNQLHANLTVEEAMNVATALKLGKD 133
R+ + Q DNQL + ++ A LKL +D
Sbjct: 81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED 116
Score = 38.7 bits (90), Expect = 0.001
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY------KILRQLWLLEYSHKDL 236
LK ++ ++ GE+TAI+G +GAGKSTL L G +IL ++YS K L
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGL 77
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 39.2 bits (92), Expect = 0.001
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTG 77
+G++T ++G SG GKSTL+N L
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLP 186
Score = 39.2 bits (92), Expect = 0.001
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 196 SGELTAIMGPSGAGKSTLLNILTG 219
+G++T ++G SG GKSTL+N L
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLP 186
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 38.4 bits (89), Expect = 0.001
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH- 92
+ + +++ +L+ +S L +G L + G +GAGK+TLL ++ G +G I
Sbjct: 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-EKGEILFERQS 64
Query: 93 -ERNLSQFRKLSCYIMQDNQLHANLTVEE 120
+++L ++K C++ + ++ LT+ E
Sbjct: 65 IKKDLCTYQKQLCFVGHRSGINPYLTLRE 93
Score = 33.8 bits (77), Expect = 0.048
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
H++ +L+ +S L +G L + G +GAGK+TLL ++ G
Sbjct: 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG 49
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 38.9 bits (91), Expect = 0.001
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 45 LKSVSG---RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQ-- 98
LK+V G RL GE ++G SG GKST + G + T+G + G + +
Sbjct: 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-TDGEVAWLGKDLLGMKDDE 92
Query: 99 ---FRKLSCYIMQD--NQLHANLTVEEAMNVATALKLGK-DLTKAARKDVVRTL 146
R I QD L+ +T+ E +A L+ L++ KD V+ +
Sbjct: 93 WRAVRSDIQMIFQDPLASLNPRMTIGEI--IAEPLRTYHPKLSRQEVKDRVKAM 144
Score = 33.1 bits (76), Expect = 0.11
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 187 LKSVSG---RLRSGELTAIMGPSGAGKSTL 213
LK+V G RL GE ++G SG GKST
Sbjct: 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTF 63
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 38.8 bits (90), Expect = 0.001
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
+ T+ ++++ + G TAI+GP+G GKSTLL L+ T G + ++G
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-AHGHVWLDGEH 70
Score = 37.3 bits (86), Expect = 0.004
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
+ T+ ++++ + G TAI+GP+G GKSTLL L+
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS 54
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 38.7 bits (90), Expect = 0.001
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
GEL ++GP+GAGK+TLL + G +G++ + G
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILGL-IPPAKGTVKVAG 41
Score = 34.8 bits (80), Expect = 0.019
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 193 RLRSGELTAIMGPSGAGKSTLLNILTG 219
GEL ++GP+GAGK+TLL + G
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILG 28
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 39.2 bits (92), Expect = 0.001
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITING---HER 94
+ + ++ ++ GEL ++G +G+GKSTL +LTG Y+ G I ++G
Sbjct: 333 QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPVTAE 390
Query: 95 NLSQFRKL 102
+RKL
Sbjct: 391 QPEDYRKL 398
Score = 33.8 bits (78), Expect = 0.078
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ ++ ++ GEL ++G +G+GKSTL +LTG
Sbjct: 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTG 371
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 38.6 bits (90), Expect = 0.001
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----- 93
P E L V+ + G TA +G +G+GKST++ +L G T+GS+ ++
Sbjct: 17 PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-TQGSVRVDDTLITSTS 75
Query: 94 --RNLSQFRK 101
+++ Q RK
Sbjct: 76 KNKDIKQIRK 85
Score = 32.0 bits (73), Expect = 0.24
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E L V+ + G TA +G +G+GKST++ +L G
Sbjct: 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG 55
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length
MRP-type transporter 1). NFT1 belongs to the MRP
(multidrug resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 38.2 bits (89), Expect = 0.002
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITING 91
P+ +LK+VS ++++GE I+G +GAGKSTL IL ++ EG I I+G
Sbjct: 18 PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDG 69
Score = 31.2 bits (71), Expect = 0.29
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTL 213
+LK+VS ++++GE I+G +GAGKSTL
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTL 50
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 38.2 bits (89), Expect = 0.002
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLSQ 98
+T+L +S +G++T ++G +G+GKSTLL +L G +EG I ++ +
Sbjct: 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPSEGEILLDAQPLESWSSKA 82
Query: 99 FRKLSCYIMQDNQLHA--NLTVEE 120
F + Y+ Q QL A +TV E
Sbjct: 83 FARKVAYLPQ--QLPAAEGMTVRE 104
Score = 33.6 bits (77), Expect = 0.069
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
R+ +T+L +S +G++T ++G +G+GKSTLL +L
Sbjct: 20 RVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML 57
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 38.8 bits (91), Expect = 0.002
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 53 RSGELTAIMGPSGAGKSTLLNILTG 77
R G++ I+GP+G GKST L IL G
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAG 122
Score = 38.8 bits (91), Expect = 0.002
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 195 RSGELTAIMGPSGAGKSTLLNILTG 219
R G++ I+GP+G GKST L IL G
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAG 122
Score = 36.1 bits (84), Expect = 0.012
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
L+ G + GE+ I+GP+G GK+T + +L G
Sbjct: 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAG 389
Score = 36.1 bits (84), Expect = 0.012
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L+ G + GE+ I+GP+G GK+T + +L G
Sbjct: 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAG 389
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 38.2 bits (89), Expect = 0.002
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 59 AIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLSQFRKLSCYIMQ--DNQLH 113
A++GP+GAGKSTL G T GS+ I G + N+ + RK + Q D+Q+
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKP-TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIF 92
Query: 114 ANLTVEE 120
+ TVE+
Sbjct: 93 SP-TVEQ 98
Score = 30.2 bits (68), Expect = 0.87
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 201 AIMGPSGAGKSTLLNILTG 219
A++GP+GAGKSTL G
Sbjct: 34 AVIGPNGAGKSTLFRHFNG 52
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 38.3 bits (90), Expect = 0.002
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 55 GELTAIMGPSGAGKSTLLNIL 75
G++T + G SG GKSTLLN L
Sbjct: 164 GKVTVLAGQSGVGKSTLLNAL 184
Score = 38.3 bits (90), Expect = 0.002
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 197 GELTAIMGPSGAGKSTLLNIL 217
G++T + G SG GKSTLLN L
Sbjct: 164 GKVTVLAGQSGVGKSTLLNAL 184
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 253
Score = 37.9 bits (88), Expect = 0.002
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 72
N N EK L ++ + +TA++GPSG GKSTLL
Sbjct: 10 KNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLL 49
Score = 36.3 bits (84), Expect = 0.007
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
EK L ++ + +TA++GPSG GKSTLL
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLL 49
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 251
Score = 38.0 bits (88), Expect = 0.002
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 27 TNTNTNTNN-NCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL-------NILTGY 78
+ N N EK L ++ + ++TA++GPSG GKST L ++++
Sbjct: 1 MKIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNV 60
Query: 79 KTSGTEGSITING 91
K EG + ++G
Sbjct: 61 K---IEGEVLLDG 70
Score = 34.5 bits (79), Expect = 0.028
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
EK L ++ + ++TA++GPSG GKST L L
Sbjct: 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCL 50
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 37.9 bits (88), Expect = 0.002
Identities = 21/69 (30%), Positives = 28/69 (40%)
Query: 7 VNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGA 66
V T N N N E LK+++ + E+TAI+GPSG
Sbjct: 2 VATVVNVQVKNEEKIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGC 61
Query: 67 GKSTLLNIL 75
GKST + L
Sbjct: 62 GKSTYIKTL 70
Score = 32.9 bits (75), Expect = 0.095
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
E LK+++ + E+TAI+GPSG GKST + L
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTL 70
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 258
Score = 38.1 bits (88), Expect = 0.002
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY----KTSGTEGSITI 89
N N EK LK+VS ++ +TA++GPSG GKST + L K EG ++I
Sbjct: 17 NLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSI 76
Query: 90 NGHE 93
G +
Sbjct: 77 EGED 80
Score = 36.5 bits (84), Expect = 0.007
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
EK LK+VS ++ +TA++GPSG GKST + L
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCL 58
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 36.1 bits (84), Expect = 0.003
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
A++G GKSTL+N LTG K+
Sbjct: 3 ALVGRPNVGKSTLINALTGAKV 24
Score = 35.0 bits (81), Expect = 0.007
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 59 AIMGPSGAGKSTLLNILTGYK 79
A++G GKSTL+N LTG K
Sbjct: 3 ALVGRPNVGKSTLINALTGAK 23
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 37.6 bits (87), Expect = 0.003
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
N T L+ S + G + A++G +G+GKSTL L G+ G I+I G +
Sbjct: 18 NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF-VRLASGKISILGQPTRQALQ 76
Query: 100 RKLSCYIMQDNQL 112
+ L Y+ Q ++
Sbjct: 77 KNLVAYVPQSEEV 89
Score = 30.6 bits (69), Expect = 0.55
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
T L+ S + G + A++G +G+GKSTL L G+
Sbjct: 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 37.8 bits (88), Expect = 0.003
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 48 VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI---NGH-------ERNLS 97
S + GE+ +MG SG+GKSTLL + G + GS+ + +G L
Sbjct: 43 ASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPV-SRGSVLVKDGDGSVDVANCDAATLR 101
Query: 98 QFR-KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
+ R + Q L TVEE NVA L++ + + KA R+ V
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEE--NVAFGLEM-QGMPKAERRKRVD 146
Score = 32.8 bits (75), Expect = 0.12
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
S + GE+ +MG SG+GKSTLL + G
Sbjct: 43 ASLDIEEGEICVLMGLSGSGKSTLLRAVNG 72
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 37.6 bits (88), Expect = 0.003
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 73
LK++ + G LT + G SG+GKS+L+N
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLIN 39
Score = 37.6 bits (88), Expect = 0.003
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
LK++ + G LT + G SG+GKS+L+N
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLIN 39
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 37.4 bits (86), Expect = 0.004
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
H+ +LK+++ ++TAI+GPSG GKSTLL L
Sbjct: 15 HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL 50
Score = 34.7 bits (79), Expect = 0.026
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
+LK+++ ++TAI+GPSG GKSTLL L
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRAL 50
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 35.7 bits (82), Expect = 0.004
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 201 AIMGPSGAGKSTLLNIL---TGYKIL 223
I GP G+GKSTL L G ++
Sbjct: 3 LITGPPGSGKSTLAKKLAEKLGIPVI 28
Score = 33.8 bits (77), Expect = 0.017
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 59 AIMGPSGAGKSTLLNIL 75
I GP G+GKSTL L
Sbjct: 3 LITGPPGSGKSTLAKKL 19
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 34.6 bits (80), Expect = 0.004
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILR 224
AI G SG+GKST+ L R
Sbjct: 3 AITGGSGSGKSTVAKKLAEQLGGR 26
Score = 34.6 bits (80), Expect = 0.004
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 59 AIMGPSGAGKSTLLNILT 76
AI G SG+GKST+ L
Sbjct: 3 AITGGSGSGKSTVAKKLA 20
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 37.3 bits (87), Expect = 0.004
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
+ I K ++ + GE +GPSG GKSTLL ++ G + T G + I N
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-TSGDLFIGEKRMNDVPPA 73
Query: 101 KLSC-YIMQDNQLHANLTVEEAMNVATALKLGK 132
+ + Q L+ +L+V E N++ LKL
Sbjct: 74 ERGVGMVFQSYALYPHLSVAE--NMSFGLKLAG 104
Score = 35.4 bits (82), Expect = 0.020
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ I K ++ + GE +GPSG GKSTLL ++ G
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 261
Score = 37.3 bits (86), Expect = 0.004
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
+ + IL+ VS + ++TAI+GPSG GKST L L + + E + + G
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN--RMNELESEVRVEG 67
Score = 34.6 bits (79), Expect = 0.030
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+ IL+ VS + ++TAI+GPSG GKST L L
Sbjct: 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL 53
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 37.6 bits (88), Expect = 0.004
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERN 95
P E ++++ S L+ G+ A++G SG+GKST+ ++ G Y+ G I +G R
Sbjct: 489 PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS--GEILFDGIPRE 544
Score = 36.1 bits (84), Expect = 0.015
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLW 227
Y+ + E ++++ S L+ G+ A++G SG+GKST+ ++ G L Q W
Sbjct: 487 YSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG---LYQPW 532
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 285
Score = 37.1 bits (86), Expect = 0.004
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 8 NTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTI---------------LKSVSGRL 52
N T++ ++ T T+T + + + +T+ L VS +
Sbjct: 3 NNEMTSDESSDGLITTTTATDTTDPSGDPAASSGETVIEARDLNVFYGDEQALDDVSMDI 62
Query: 53 RSGELTAIMGPSGAGKSTLL 72
++TA++GPSG GKST L
Sbjct: 63 PENQVTAMIGPSGCGKSTFL 82
Score = 33.6 bits (77), Expect = 0.069
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL 214
L VS + ++TA++GPSG GKST L
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFL 82
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 37.4 bits (87), Expect = 0.005
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
P+ +L +++ ++ GE I+GPSG+GKSTL +L T G + ++G +
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP-QHGQVLVDGVD 520
Score = 35.5 bits (82), Expect = 0.020
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 180 RIHEKT--ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
R + +L +++ ++ GE I+GPSG+GKSTL +L
Sbjct: 464 RYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL 503
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 259
Score = 36.9 bits (85), Expect = 0.006
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
N ++ +S + ++TAI+GPSG GKST + L + S EG + + G
Sbjct: 18 NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLN--RISELEGPVKVEG 67
Score = 32.7 bits (74), Expect = 0.11
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
++ +S + ++TAI+GPSG GKST + L
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTL 53
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide
variety of presumed DNA repair proteins.
Length = 154
Score = 36.1 bits (84), Expect = 0.006
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 190 VSGRLRSGELTAIMGPSGAGKSTLL-----NILTGYKILRQ 225
V G L G LT + G G GKSTL + TG L
Sbjct: 26 VKGLLPRGGLTLLAGAPGTGKSTLALDLAAAVATGRPFLGP 66
Score = 35.7 bits (83), Expect = 0.007
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 48 VSGRLRSGELTAIMGPSGAGKSTLL 72
V G L G LT + G G GKSTL
Sbjct: 26 VKGLLPRGGLTLLAGAPGTGKSTLA 50
>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 36.6 bits (86), Expect = 0.006
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 195 RSGELTAIMGPSGAGKSTLLNILTGYKI 222
+SG AI+G GKSTLLN L G KI
Sbjct: 4 KSG-FVAIVGRPNVGKSTLLNALVGQKI 30
Score = 34.6 bits (81), Expect = 0.034
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 53 RSGELTAIMGPSGAGKSTLLNILTGYKTS 81
+SG AI+G GKSTLLN L G K S
Sbjct: 4 KSG-FVAIVGRPNVGKSTLLNALVGQKIS 31
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 36.8 bits (85), Expect = 0.006
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------RNL 96
L +VS + +G++ ++G SGAGKSTL+ + + T GS+ ++G + L
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TSGSVIVDGQDLTTLSNSEL 77
Query: 97 SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL 130
++ R+ I Q L ++ TV NVA L+L
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFG--NVALPLEL 109
Score = 30.2 bits (68), Expect = 0.80
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
L +VS + +G++ ++G SGAGKSTL+
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLI 48
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 36.6 bits (84), Expect = 0.006
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 14/71 (19%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL-------TGYKTSGTEGSITINGHE- 93
KT+L VS + +T++MGP+G+GK+T L L +GY+ S G + + G
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYS---GDVLLGGRSI 90
Query: 94 ---RNLSQFRK 101
R++ +FR+
Sbjct: 91 FNYRDVLEFRR 101
Score = 33.5 bits (76), Expect = 0.067
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
KT+L VS + +T++MGP+G+GK+T L L
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTL 67
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 36.7 bits (85), Expect = 0.007
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLSQFRK 101
LK VS + G+ T+I+G +G+GKST+ ++ G + G I N + N + RK
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-KSGEIFYNNQAITDDNFEKLRK 83
Query: 102 LSCYIMQ--DNQ 111
+ Q DNQ
Sbjct: 84 HIGIVFQNPDNQ 95
Score = 30.1 bits (68), Expect = 0.86
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
LK VS + G+ T+I+G +G+GKST+ ++ G
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG 57
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 37.2 bits (87), Expect = 0.007
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 73
LK++ + G T + G SG+GKSTL+N
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645
Score = 37.2 bits (87), Expect = 0.007
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
LK++ + G T + G SG+GKSTL+N
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645
Score = 34.9 bits (81), Expect = 0.039
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTL 71
LK++ + +L I G SG+GKS+L
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42
Score = 34.9 bits (81), Expect = 0.039
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTL 213
LK++ + +L I G SG+GKS+L
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 36.6 bits (85), Expect = 0.007
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 53 RSGELTAIMGPSGAGKSTLLNILTG 77
R G++ ++GP+G GKST L IL G
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAG 48
Score = 36.6 bits (85), Expect = 0.007
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 195 RSGELTAIMGPSGAGKSTLLNILTG 219
R G++ ++GP+G GKST L IL G
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAG 48
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 36.6 bits (85), Expect = 0.008
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLS 97
EK L VS ++ GE +I+G +G+GKST + ++ G G I I+G E N+
Sbjct: 19 EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL-LEAESGQIIIDGDLLTEENVW 77
Query: 98 QFRKLSCYIMQ--DNQLHANLTVEEAMNVATAL 128
R + Q DNQ TVE+ +VA L
Sbjct: 78 DIRHKIGMVFQNPDNQF-VGATVED--DVAFGL 107
Score = 33.6 bits (77), Expect = 0.068
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
Y EK L VS ++ GE +I+G +G+GKST + ++ G
Sbjct: 14 YKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG 55
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 35.2 bits (82), Expect = 0.008
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 60 IMGPSGAGKSTLLNIL 75
+ GPSG GKSTLL L
Sbjct: 4 LSGPSGVGKSTLLKRL 19
Score = 35.2 bits (82), Expect = 0.008
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 202 IMGPSGAGKSTLLNIL 217
+ GPSG GKSTLL L
Sbjct: 4 LSGPSGVGKSTLLKRL 19
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 36.9 bits (86), Expect = 0.009
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
Y I K ++K S +++ G+ A++GP+G GK+TLL ++ G
Sbjct: 327 YQ-IDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG 367
Score = 35.7 bits (83), Expect = 0.018
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
N N + K ++K S +++ G+ A++GP+G GK+TLL ++ G
Sbjct: 324 NVNYQID--GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG 367
Score = 31.8 bits (73), Expect = 0.30
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 197 GELTAIMGPSGAGKSTLLNILTGYKIL 223
E ++G +GAGKSTL+ IL G +L
Sbjct: 29 NERVCLVGRNGAGKSTLMKILNGEVLL 55
Score = 31.8 bits (73), Expect = 0.32
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 55 GELTAIMGPSGAGKSTLLNILTG 77
E ++G +GAGKSTL+ IL G
Sbjct: 29 NERVCLVGRNGAGKSTLMKILNG 51
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 249
Score = 36.0 bits (83), Expect = 0.009
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
E LKS++ + + ++TA++GPSG GKSTLL L
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCL 49
Score = 36.0 bits (83), Expect = 0.009
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
E LKS++ + + ++TA++GPSG GKSTLL L
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCL 49
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 36.3 bits (84), Expect = 0.009
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 21 TNNTNNTNTNTNTNN-NCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL------- 72
T+ N T T T N N +K+V + ++TA +GPSG GKST+L
Sbjct: 1 TSTLNGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLN 60
Query: 73 NILTGYKTSGTEGSITINGHE 93
+++ G++ EG +T +G
Sbjct: 61 DLIPGFR---VEGKVTFHGKN 78
Score = 32.8 bits (75), Expect = 0.10
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL 214
+K+V + ++TA +GPSG GKST+L
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTIL 53
>gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 35.8 bits (83), Expect = 0.009
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 51 RLRSGELTAIMGPSGAGKSTLL 72
R G L A++GPSGAGK TLL
Sbjct: 1 RTFMGRLIAVVGPSGAGKDTLL 22
Score = 35.8 bits (83), Expect = 0.009
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 193 RLRSGELTAIMGPSGAGKSTLL 214
R G L A++GPSGAGK TLL
Sbjct: 1 RTFMGRLIAVVGPSGAGKDTLL 22
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 36.3 bits (84), Expect = 0.009
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
P E + V+ G+ AI+G +G+GKSTL+ + T G++T++
Sbjct: 17 PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL-LKPTTGTVTVDD 68
Score = 30.9 bits (70), Expect = 0.52
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+E + V+ G+ AI+G +G+GKSTL+ +
Sbjct: 18 YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA 55
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 250
Score = 35.8 bits (82), Expect = 0.011
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK----TSGTEGSITINGHE 93
LK +S + + A +GPSG GKST L + + EG I I+G
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRN 71
Score = 31.5 bits (71), Expect = 0.26
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
LK +S + + A +GPSG GKST L +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLF 49
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 36.7 bits (85), Expect = 0.011
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK---TSGTEGSITINGHE---RNLS 97
+L+ VS R+ E I+G +G+GKSTLL LT + G G I +NG E L
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLL--LTFMRMVEVCG--GEIRVNGREIGAYGLR 1380
Query: 98 QFRKLSCYIMQD 109
+ R+ I QD
Sbjct: 1381 ELRRQFSMIPQD 1392
Score = 36.3 bits (84), Expect = 0.012
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
K +L+ VS + G+LT ++G +G+GKSTLL L
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS 708
Score = 36.3 bits (84), Expect = 0.012
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
K +L+ VS + G+LT ++G +G+GKSTLL L
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS 708
Score = 32.4 bits (74), Expect = 0.22
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
+L+ VS R+ E I+G +G+GKSTLL
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLL 1353
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 36.2 bits (84), Expect = 0.012
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH 92
++ +L++++ + S A++G +G+GKSTL ++L GY TEG I ++G
Sbjct: 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL-TEGEIRLDGR 403
Score = 33.9 bits (78), Expect = 0.058
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ 225
+ +L++++ + S A++G +G+GKSTL ++L GY L +
Sbjct: 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395
>gnl|CDD|233994 TIGR02746, TraC-F-type, type-IV secretion system protein TraC. The
protein family described here is common among the F, P
and I-like type IV secretion systems. Gene symbols
include TraC (F-type), TrbE/VirB4 (P-type) and TraU
(I-type). The protein conyains the Walker A and B motifs
and so is a putative nucleotide triphosphatase.
Length = 797
Score = 36.1 bits (84), Expect = 0.012
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 13/141 (9%)
Query: 92 HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD 151
E S FRK + +D ++ + A+ L +DL KA R VRTL S
Sbjct: 336 VEAAKSSFRKNGFDLAEDKRIQLQAFLA-ALPFNPTEGLFEDLKKAGR---VRTL---SS 388
Query: 152 TNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKS 211
N L W + S LL ++ S S A++G SGAGKS
Sbjct: 389 ANAVNLLPLIADWKGTKGSGLLLPTRRGQLSAFDPFDSDST----NYNIAVVGGSGAGKS 444
Query: 212 TLLN--ILTGYKILRQLWLLE 230
+ I+ ++W+++
Sbjct: 445 FFMQELIVDNLSRGGKVWVID 465
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 35.2 bits (82), Expect = 0.013
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 55 GELTAIMGPSGAGKSTLLNIL 75
G L + GPSG GKSTL+ L
Sbjct: 4 GLLIVLSGPSGVGKSTLVKAL 24
Score = 35.2 bits (82), Expect = 0.013
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 197 GELTAIMGPSGAGKSTLLNIL 217
G L + GPSG GKSTL+ L
Sbjct: 4 GLLIVLSGPSGVGKSTLVKAL 24
>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 36.1 bits (84), Expect = 0.014
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 58 TAIMGPSGAGKSTLLNIL 75
T I GP+G+GK+TLLN L
Sbjct: 437 TLIFGPTGSGKTTLLNFL 454
Score = 36.1 bits (84), Expect = 0.014
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 200 TAIMGPSGAGKSTLLNIL 217
T I GP+G+GK+TLLN L
Sbjct: 437 TLIFGPTGSGKTTLLNFL 454
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 34.7 bits (80), Expect = 0.016
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
++G G GKS+LLN L G ++
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVG 23
Score = 34.4 bits (79), Expect = 0.021
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 59 AIMGPSGAGKSTLLNILTGYKTSGTE 84
++G G GKS+LLN L G +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVS 26
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 35.5 bits (82), Expect = 0.016
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT----SGTEGSITING 91
+ L +S ++TA++GPSG GKST L L + EG I ++G
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72
Score = 34.8 bits (80), Expect = 0.028
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+ L +S ++TA++GPSG GKST L L
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCL 52
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this
model include Ras, RhoA, Rab11, translation elongation
factor G, translation initiation factor IF-2,
tetratcycline resistance protein TetM, CDC42, Era,
ADP-ribosylation factors, tdhF, and many others. In
some proteins the domain occurs more than once.This
model recognizes a large number of small GTP-binding
proteins and related domains in larger proteins. Note
that the alpha chains of heterotrimeric G proteins are
larger proteins in which the NKXD motif is separated
from the GxxxxGK[ST] motif (P-loop) by a long insert
and are not easily detected by this model [Unknown
function, General].
Length = 162
Score = 34.7 bits (80), Expect = 0.017
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 11/44 (25%)
Query: 59 AIMGPSGAGKSTLLNILTGYKTSGTE-----------GSITING 91
I+G GKSTLLN L G K S TE I +G
Sbjct: 5 VIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDG 48
Score = 32.7 bits (75), Expect = 0.080
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
I+G GKSTLLN L G KI
Sbjct: 5 VIVGDPNVGKSTLLNRLLGNKI 26
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 252
Score = 35.3 bits (81), Expect = 0.017
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
+ LK + E+TA++GPSG GKST L L
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTL 51
Score = 35.3 bits (81), Expect = 0.017
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+ LK + E+TA++GPSG GKST L L
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTL 51
>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 35.2 bits (82), Expect = 0.017
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
AI+G GKSTLLN L G KI
Sbjct: 10 AIIGRPNVGKSTLLNALVGQKIS 32
Score = 34.1 bits (79), Expect = 0.051
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 59 AIMGPSGAGKSTLLNILTGYKTS 81
AI+G GKSTLLN L G K S
Sbjct: 10 AIIGRPNVGKSTLLNALVGQKIS 32
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 259
Score = 35.3 bits (81), Expect = 0.019
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
LK+++ + E+TAI+GPSG GKST + L
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTL 58
Score = 35.3 bits (81), Expect = 0.019
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
LK+++ + E+TAI+GPSG GKST + L
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTL 58
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 35.2 bits (81), Expect = 0.019
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLL----NILTGYKTSGTEGSITINGH-----ER 94
++K V ++ + A+MGPSG GKSTLL +L + + EG + + G +
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 95 NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 132
+ + R+ + Q +LT+ + NVA +KL
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYD--NVAIGVKLNG 114
Score = 32.5 bits (74), Expect = 0.13
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
++K V ++ + A+MGPSG GKSTLL
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLL 47
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 34.7 bits (81), Expect = 0.020
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 53 RSGELTAIMGPSGAGKSTLLNIL 75
R G L + GPSGAGKSTL+ L
Sbjct: 3 RRGLLIVLSGPSGAGKSTLVKAL 25
Score = 34.7 bits (81), Expect = 0.020
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 195 RSGELTAIMGPSGAGKSTLLNIL 217
R G L + GPSGAGKSTL+ L
Sbjct: 3 RRGLLIVLSGPSGAGKSTLVKAL 25
>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like
protein)-like YfjP subfamily includes several
uncharacterized bacterial GTPases that are similar to
Era. They generally show sequence conservation in the
region between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. Era is
characterized by a distinct derivative of the KH domain
(the pseudo-KH domain) which is located C-terminal to
the GTPase domain.
Length = 140
Score = 34.2 bits (79), Expect = 0.021
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 59 AIMGPSGAGKSTLLNILTG 77
+MG +GAGKS+L N L G
Sbjct: 1 GLMGKTGAGKSSLCNALFG 19
Score = 34.2 bits (79), Expect = 0.021
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 201 AIMGPSGAGKSTLLNILTG 219
+MG +GAGKS+L N L G
Sbjct: 1 GLMGKTGAGKSSLCNALFG 19
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The
Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show sequence
conservation in the region between the Walker A and B
motifs (G1 and G3 box motifs), to the exclusion of other
GTPases. TrmE is ubiquitous in bacteria and is a
widespread mitochondrial protein in eukaryotes, but is
absent from archaea. The yeast member of TrmE family,
MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 161
Score = 34.5 bits (80), Expect = 0.022
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
AI G GKS+LLN L G +
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVG 23
Score = 33.4 bits (77), Expect = 0.043
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 59 AIMGPSGAGKSTLLNILTG 77
AI G GKS+LLN L G
Sbjct: 1 AIFGRPNVGKSSLLNALLG 19
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 549
Score = 35.3 bits (81), Expect = 0.022
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
L ++S + GE+ I+G +G+GKSTL N++ G T +G++ I G
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV-TMPNKGTVDIKG 85
Score = 31.4 bits (71), Expect = 0.44
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L ++S + GE+ I+G +G+GKSTL N++ G
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAG 72
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 250
Score = 34.9 bits (80), Expect = 0.023
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
N N ++ ILK+V+ + +TA++GPSG GKST + L
Sbjct: 8 NLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL 49
Score = 34.5 bits (79), Expect = 0.029
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+ ILK+V+ + +TA++GPSG GKST + L
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL 49
>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein
YsxC/EngB. Members of this protein family are a GTPase
associated with ribosome biogenesis, typified by YsxC
from Bacillus subutilis. The family is widely but not
universally distributed among bacteria. Members
commonly are called EngB based on homology to EngA, one
of several other GTPases of ribosome biogenesis.
Cutoffs as set find essentially all bacterial members,
but also identify large numbers of eukaryotic (probably
organellar) sequences. This protein is found in about
80 percent of bacterial genomes [Protein synthesis,
Other].
Length = 178
Score = 34.4 bits (80), Expect = 0.025
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 59 AIMGPSGAGKSTLLNILTGYK----TSGTEGS-ITIN 90
A G S GKS+L+N LT K TS T G IN
Sbjct: 22 AFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLIN 58
Score = 31.3 bits (72), Expect = 0.25
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
A G S GKS+L+N LT K L
Sbjct: 22 AFAGRSNVGKSSLINALTNRKKL 44
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 35.1 bits (81), Expect = 0.026
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
++ IL S+ L G ++G +GAGKSTL+ +L G
Sbjct: 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360
Score = 35.1 bits (81), Expect = 0.030
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++ IL S+ L G ++G +GAGKSTL+ +L G
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360
Score = 29.0 bits (65), Expect = 2.4
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
+ +L + + + G+ ++G +G GKSTLL +L + S GS T G
Sbjct: 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKN-EISADGGSYTFPG 62
>gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed.
Length = 196
Score = 34.3 bits (80), Expect = 0.028
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 59 AIMGPSGAGKSTLLNILTGYK----TSGTEG-SITIN 90
A G S GKS+L+N LT K TS T G + IN
Sbjct: 28 AFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLIN 64
Score = 32.0 bits (74), Expect = 0.16
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
A G S GKS+L+N LT K L
Sbjct: 28 AFAGRSNVGKSSLINALTNRKNL 50
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 286
Score = 34.9 bits (80), Expect = 0.029
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLL 72
+K V+ + S +TAI+GPSG GKST L
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFL 82
Score = 34.9 bits (80), Expect = 0.029
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL 214
+K V+ + S +TAI+GPSG GKST L
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFL 82
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein;
Provisional.
Length = 522
Score = 35.1 bits (81), Expect = 0.030
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 2 NSQEYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNN 36
V+ N +N NN NN NN N+N N NN
Sbjct: 5 REHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNN 39
Score = 34.7 bits (80), Expect = 0.034
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 8 NTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPN 40
+ + N +N NN NN NN + N NNN
Sbjct: 8 LSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQ 40
Score = 33.5 bits (77), Expect = 0.087
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 8 NTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNE 41
N N + + NN ++ N N N N N
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNNNQINSNNPN 34
Score = 33.5 bits (77), Expect = 0.091
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 2 NSQEYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKT 43
N +E+++ +N + N NN NN N N+N NN K
Sbjct: 3 NLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKL 44
Score = 32.8 bits (75), Expect = 0.15
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 7 VNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKT 43
VN + +N + N NN N N N+N N
Sbjct: 2 VNLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGN 38
Score = 32.4 bits (74), Expect = 0.18
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 1 MNSQEYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILK 46
+ NN ++ N NN NN + N N N N + ++ K
Sbjct: 3 NLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLPRGK 48
Score = 32.4 bits (74), Expect = 0.20
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 7 VNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGEL 57
+ + + + N +N NN NN N N+NN K G+ +
Sbjct: 4 LREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLPRGKKKQENP 54
Score = 30.1 bits (68), Expect = 1.2
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 11 NTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSG 65
N N + + NN ++ N N NNN + + +G ++ +L
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNNNQINSNN---PNNNGNNQASKLPRGKKKQE 52
Score = 27.0 bits (60), Expect = 9.5
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 10 NNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILK 46
N + + + N +N N N N NN N
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNG 37
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 33.7 bits (77), Expect = 0.033
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIM--GPSGAGKSTLLN 215
R E L R RSG +++ GPSG GK++LL
Sbjct: 5 REEELERLLDALRRARSGGPPSVLLTGPSGTGKTSLLR 42
Score = 32.6 bits (74), Expect = 0.096
Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 10/111 (9%)
Query: 40 NEKTILKSVSGRLRSGELTAIM--GPSGAGKSTLLNILT--GYKTSGTEGSITINGHERN 95
E L R RSG +++ GPSG GK++LL L +G N
Sbjct: 7 EELERLLDALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAF 66
Query: 96 LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
R+L QL L E + L +D+V L
Sbjct: 67 SQALREL------LRQLLRELAAELLLLREALLAALGAELIEGLQDLVELL 111
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 34.4 bits (79), Expect = 0.034
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITING 91
+K L +S + G TA++G +G+GKST+ ++ G IT++G
Sbjct: 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG 71
Score = 33.6 bits (77), Expect = 0.065
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+K L +S + G TA++G +G+GKST+ ++ G
Sbjct: 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLING 55
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 34.5 bits (79), Expect = 0.039
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 51 RLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---ERNLSQFRKLSCYI 106
R+ G++ I+G +G GKSTL + G Y EG I ++G + +R L I
Sbjct: 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ--EGEILLDGAAVSADSRDDYRDLFSAI 421
Query: 107 MQDNQLHANL 116
D L +L
Sbjct: 422 FADFHLFDDL 431
Score = 31.9 bits (72), Expect = 0.30
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 193 RLRSGELTAIMGPSGAGKSTLLNILTG 219
R+ G++ I+G +G GKSTL + G
Sbjct: 364 RIAQGDIVFIVGENGCGKSTLAKLFCG 390
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 252
Score = 34.2 bits (78), Expect = 0.041
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLL 72
+K VS +TAI+GPSG GKST+L
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVL 47
Score = 34.2 bits (78), Expect = 0.041
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL 214
+K VS +TAI+GPSG GKST+L
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVL 47
>gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons
confer the ability to use somewhat different profiles
of C-P bond-containing compounds (see PMID:15231805),
including phosphites as well as phosphonates. PhnN in
E. coli shows considerable homology to guanylate
kinases (EC 2.7.4.8), and has actually been shown to
act as a ribose 1,5-bisphosphokinase (PRPP forming).
This suggests an analogous kinase reaction for
phosphonate metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP [Central intermediary metabolism,
Phosphorus compounds].
Length = 179
Score = 33.9 bits (78), Expect = 0.042
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 55 GELTAIMGPSGAGKSTLL 72
G L ++GPSGAGK TLL
Sbjct: 1 GRLIYVVGPSGAGKDTLL 18
Score = 33.9 bits (78), Expect = 0.042
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 197 GELTAIMGPSGAGKSTLL 214
G L ++GPSGAGK TLL
Sbjct: 1 GRLIYVVGPSGAGKDTLL 18
>gnl|CDD|238542 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands.
Length = 271
Score = 34.3 bits (79), Expect = 0.043
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 72
+N +L ++ LR GEL + +G GK+T L
Sbjct: 9 SNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFL 47
Score = 33.5 bits (77), Expect = 0.070
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL 214
L ++ LR GEL + +G GK+T L
Sbjct: 20 LNKLTKGLRKGELIILTAGTGVGKTTFL 47
>gnl|CDD|218745 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 34.4 bits (79), Expect = 0.047
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 19 NNTNNTNNTNTNTNTNNNCEPNEK---TILKSVSGR----LRSGELTAIMGPSGAGKSTL 71
+ N T + + + +IL VS R L SG+ ++G G+GK+TL
Sbjct: 2 ETSTGVNGGTAEFTTPDEEDEGQNLWSSILSEVSTRSRSKLPSGKNVLVLGEDGSGKTTL 61
Query: 72 LNILTGY----KTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANL 116
+ L G K G E + +N H+ + + + +I+ + H L
Sbjct: 62 IAKLQGVEHPKKGRGLE-YLYLNVHDEDRDDQTRCNVWILDGDLYHKGL 109
>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era. Era is an essential
GTPase in Escherichia coli and many other bacteria. It
plays a role in ribosome biogenesis. Few bacteria lack
this protein [Protein synthesis, Other].
Length = 270
Score = 33.9 bits (78), Expect = 0.047
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
AI+G GKSTLLN L G KI
Sbjct: 4 AILGRPNVGKSTLLNQLHGQKIS 26
Score = 32.0 bits (73), Expect = 0.24
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 59 AIMGPSGAGKSTLLNILTGYKTS 81
AI+G GKSTLLN L G K S
Sbjct: 4 AILGRPNVGKSTLLNQLHGQKIS 26
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 34.2 bits (78), Expect = 0.048
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 25/132 (18%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL-------NILTGYKTSGT---EGSITIN 90
EK + +S + +TA++GPSG GKST L +++ ++ G EG + I
Sbjct: 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG-LNIL 91
Query: 91 GHERNLSQFRKLSCYIMQD-----NQLHANLTVEEAMNVATALK-------LGKDLTKAA 138
N+ R+ + Q ++ N+T A+ A + + + LTKAA
Sbjct: 92 DSNINVVNLRREIGMVFQKPNPFPKSIYNNIT--HALKYAGERRKSVLDEIVEESLTKAA 149
Query: 139 RKDVVRTLFYRS 150
D V+ + S
Sbjct: 150 LWDEVKDRLHSS 161
Score = 33.4 bits (76), Expect = 0.066
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
EK + +S + +TA++GPSG GKST L
Sbjct: 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFL 64
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 251
Score = 33.9 bits (77), Expect = 0.049
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
L +S ELTA++GPSG GKST L L
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL 50
Score = 33.9 bits (77), Expect = 0.049
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
L +S ELTA++GPSG GKST L L
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL 50
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 252
Score = 33.8 bits (77), Expect = 0.051
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--TSGTE--GSITINGHE 93
+K +K+V+ ++ G + A++GPSG GK+T L + T G G I ++G +
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQD 72
Score = 32.3 bits (73), Expect = 0.17
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
+K +K+V+ ++ G + A++GPSG GK+T L
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFL 47
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP).
Signal recognition particle receptor, beta subunit
(SR-beta). SR-beta and SR-alpha form the heterodimeric
signal recognition particle (SRP or SR) receptor that
binds SRP to regulate protein translocation across the
ER membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC)
to the ER membrane via interaction with the SR, which
is localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been
observed in human colon cancer, suggesting it may play
a role in the development of this type of cancer.
Length = 202
Score = 33.4 bits (77), Expect = 0.052
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSGTEGSITIN 90
++GPS +GK+ L LT K T SI N
Sbjct: 5 LLGPSDSGKTALFTKLTTGKVRSTVTSIEPN 35
Score = 28.4 bits (64), Expect = 2.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 202 IMGPSGAGKSTLLNILT 218
++GPS +GK+ L LT
Sbjct: 5 LLGPSDSGKTALFTKLT 21
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 34.3 bits (79), Expect = 0.053
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 58 TAIMGPSGAGKSTLLNIL 75
T I+GP+GAGK+ LL+ L
Sbjct: 439 TLIIGPTGAGKTVLLSFL 456
Score = 34.3 bits (79), Expect = 0.053
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 200 TAIMGPSGAGKSTLLNIL 217
T I+GP+GAGK+ LL+ L
Sbjct: 439 TLIIGPTGAGKTVLLSFL 456
>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family. The YihA (EngB)
subfamily of GTPases is typified by the E. coli YihA,
an essential protein involved in cell division control.
YihA and its orthologs are small proteins that
typically contain less than 200 amino acid residues and
consists of the GTPase domain only (some of the
eukaryotic homologs contain an N-terminal extension of
about 120 residues that might be involved in organellar
targeting). Homologs of yihA are found in most
Gram-positive and Gram-negative pathogenic bacteria,
with the exception of Mycobacterium tuberculosis. The
broad-spectrum nature of YihA and its essentiality for
cell viability in bacteria make it an attractive
antibacterial target.
Length = 170
Score = 33.3 bits (77), Expect = 0.057
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 59 AIMGPSGAGKSTLLNILTGYK----TSGTEGS-ITIN 90
A G S GKS+L+N LT K TS T G IN
Sbjct: 3 AFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLIN 39
Score = 32.1 bits (74), Expect = 0.15
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 201 AIMGPSGAGKSTLLNILTGYK 221
A G S GKS+L+N LT K
Sbjct: 3 AFAGRSNVGKSSLINALTNRK 23
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of
RNase L inhibitor. The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis,
formation of translation preinitiation complexes, and
assembly of HIV capsids. RLI's are not transport
proteins, and thus cluster with a group of soluble
proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains, which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 177
Score = 33.3 bits (76), Expect = 0.060
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 50 GRLRSGELTAIMGPSGAGKSTLLNILTG 77
G ++ GE+ I+GP+G GK+T + IL G
Sbjct: 20 GVVKEGEVIGIVGPNGTGKTTAVKILAG 47
Score = 33.3 bits (76), Expect = 0.060
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 192 GRLRSGELTAIMGPSGAGKSTLLNILTG 219
G ++ GE+ I+GP+G GK+T + IL G
Sbjct: 20 GVVKEGEVIGIVGPNGTGKTTAVKILAG 47
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 269
Score = 33.6 bits (77), Expect = 0.066
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
+K+V + G++TA++GPSG GKST+L L
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSL 59
Score = 33.6 bits (77), Expect = 0.066
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+K+V + G++TA++GPSG GKST+L L
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSL 59
>gnl|CDD|206726 cd04163, Era, E. coli Ras-like protein (Era) is a multifunctional
GTPase. Era (E. coli Ras-like protein) is a
multifunctional GTPase found in all bacteria except some
eubacteria. It binds to the 16S ribosomal RNA (rRNA) of
the 30S subunit and appears to play a role in the
assembly of the 30S subunit, possibly by chaperoning the
16S rRNA. It also contacts several assembly elements of
the 30S subunit. Era couples cell growth with
cytokinesis and plays a role in cell division and energy
metabolism. Homologs have also been found in eukaryotes.
Era contains two domains: the N-terminal GTPase domain
and a C-terminal domain KH domain that is critical for
RNA binding. Both domains are important for Era
function. Era is functionally able to compensate for
deletion of RbfA, a cold-shock adaptation protein that
is required for efficient processing of the 16S rRNA.
Length = 168
Score = 32.8 bits (76), Expect = 0.066
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
AI+G GKSTLLN L G KI
Sbjct: 7 AIIGRPNVGKSTLLNALVGQKI 28
Score = 30.9 bits (71), Expect = 0.31
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 59 AIMGPSGAGKSTLLNILTGYKTS 81
AI+G GKSTLLN L G K S
Sbjct: 7 AIIGRPNVGKSTLLNALVGQKIS 29
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 33.5 bits (77), Expect = 0.067
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTL---LNIL 75
P E L +VS + GE AI+G +G+GK+T LN L
Sbjct: 17 PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56
Score = 31.6 bits (72), Expect = 0.30
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTL---LNIL 217
E L +VS + GE AI+G +G+GK+T LN L
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56
>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction
only].
Length = 200
Score = 33.4 bits (77), Expect = 0.068
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 59 AIMGPSGAGKSTLLNILTGYK----TSGTEG-SITIN 90
A G S GKS+L+N LT K TS T G + IN
Sbjct: 28 AFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLIN 64
Score = 31.4 bits (72), Expect = 0.29
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
A G S GKS+L+N LT K L
Sbjct: 28 AFAGRSNVGKSSLINALTNQKNL 50
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 33.9 bits (77), Expect = 0.069
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 57 LTAIMGPSGAGKSTLLNILTGYKTSGT----EGSITI-NGHERNLSQF 99
+ A++GP G GKSTL+ L T T G IT+ +G R ++
Sbjct: 71 IVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFL 118
Score = 30.5 bits (68), Expect = 0.87
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 199 LTAIMGPSGAGKSTLLNILTGY 220
+ A++GP G GKSTL+ L
Sbjct: 71 IVAVVGPPGTGKSTLIRSLVRR 92
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 34.2 bits (78), Expect = 0.071
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
L ++ + G L A++G G GKS+LL+ L + EG + + G
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLA-EMDKVEGHVHMKG 699
Score = 30.3 bits (68), Expect = 1.0
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
+L+ ++ + GE I+G +GAGKS+L L S EG I I+G
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA-EGEIIIDG 1347
Score = 30.3 bits (68), Expect = 1.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L ++ + G L A++G G GKS+LL+ L
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 686
Score = 28.4 bits (63), Expect = 4.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTL 213
+L+ ++ + GE I+G +GAGKS+L
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSL 1328
>gnl|CDD|206650 cd01851, GBP, Guanylate-binding protein (GBP) family (N-terminal
domain). Guanylate-binding protein (GBP), N-terminal
domain. Guanylate-binding proteins (GBPs) define a
group of proteins that are synthesized after activation
of the cell by interferons. The biochemical properties
of GBPs are clearly different from those of Ras-like
and heterotrimeric GTP-binding proteins. They bind
guanine nucleotides with low affinity (micromolar
range), are stable in their absence and have a high
turnover GTPase. In addition to binding GDP/GTP, they
have the unique ability to bind GMP with equal affinity
and hydrolyze GTP not only to GDP, but also to GMP.
Furthermore, two unique regions around the base and the
phosphate-binding areas, the guanine and the phosphate
caps, respectively, give the nucleotide-binding site a
unique appearance not found in the canonical
GTP-binding proteins. The phosphate cap, which
constitutes the region analogous to switch I,
completely shields the phosphate-binding site from
solvent such that a potential GTPase-activating protein
(GAP) cannot approach.
Length = 224
Score = 33.1 bits (76), Expect = 0.073
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 59 AIMGPSGAGKSTLLNILTGYKTS 81
++ G +GKS LLN L G
Sbjct: 11 SVFGSQSSGKSFLLNHLFGTSDG 33
Score = 32.7 bits (75), Expect = 0.12
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
++ G +GKS LLN L G
Sbjct: 11 SVFGSQSSGKSFLLNHLFGTSD 32
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 34.0 bits (78), Expect = 0.075
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
PN +++S+S + SG I GP+G GKS+L IL
Sbjct: 462 PNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGE 500
Score = 30.9 bits (70), Expect = 0.71
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLW 227
+++S+S + SG I GP+G GKS+L ++IL +LW
Sbjct: 467 LIESLSFEVPSGNNLLICGPNGCGKSSL------FRILGELW 502
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 33.4 bits (76), Expect = 0.078
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--- 93
P+ L++++ ++ GE I+G +G+GKSTL L G +G + ++G +
Sbjct: 10 SYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-QKGKVLVSGIDTGD 68
Query: 94 -RNLSQFRKLSCYIMQDNQLH-ANLTVEE 120
L RKL + Q+ + TVEE
Sbjct: 69 FSKLQGIRKLVGIVFQNPETQFVGRTVEE 97
Score = 28.0 bits (62), Expect = 3.8
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L++++ ++ GE I+G +G+GKSTL L G
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNG 50
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 32.5 bits (75), Expect = 0.083
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 59 AIMGPSGAGKSTLLNILTGYKTS 81
I G GK+TLL L
Sbjct: 3 VITGGPSTGKTTLLEALAARGYP 25
Score = 32.1 bits (74), Expect = 0.14
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Query: 201 AIMGPSGAGKSTLLNIL--TGYKILRQLWLLEYS 232
I G GK+TLL L GY + EY
Sbjct: 3 VITGGPSTGKTTLLEALAARGYP-----VVPEYG 31
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 32.6 bits (75), Expect = 0.085
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 59 AIMGPSGAGKSTL 71
I+GP GAGKSTL
Sbjct: 4 LILGPPGAGKSTL 16
Score = 32.6 bits (75), Expect = 0.085
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 201 AIMGPSGAGKSTL 213
I+GP GAGKSTL
Sbjct: 4 LILGPPGAGKSTL 16
>gnl|CDD|237040 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 33.5 bits (77), Expect = 0.085
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 54 SGELTAIMGPSGAGKSTLLNILT 76
++T + GPSG GKS+L+N L
Sbjct: 171 RNKITVVAGPSGVGKSSLINRLI 193
Score = 33.5 bits (77), Expect = 0.085
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 196 SGELTAIMGPSGAGKSTLLNILT 218
++T + GPSG GKS+L+N L
Sbjct: 171 RNKITVVAGPSGVGKSSLINRLI 193
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 33.5 bits (76), Expect = 0.087
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
+K S + GE+ IMG SG+GKST++ +L T G + I+G
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL-IEPTRGQVLIDG 89
Score = 31.5 bits (71), Expect = 0.37
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 181 IHEKTIL----KSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
I EKT L K S + GE+ IMG SG+GKST++ +L
Sbjct: 34 ILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLL 74
>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only].
Length = 411
Score = 33.4 bits (77), Expect = 0.088
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 49 SGRLRSG-ELTAIMGPSGAGKSTLLNILTG 77
R RSG L A++G + AGKSTL N LTG
Sbjct: 185 KKRSRSGIPLVALVGYTNAGKSTLFNALTG 214
Score = 33.4 bits (77), Expect = 0.088
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 191 SGRLRSG-ELTAIMGPSGAGKSTLLNILTG 219
R RSG L A++G + AGKSTL N LTG
Sbjct: 185 KKRSRSGIPLVALVGYTNAGKSTLFNALTG 214
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 33.6 bits (76), Expect = 0.088
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 9 TNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSV 48
+N+ + +N+T N+N+T TN+ T+TN+ N TI +
Sbjct: 287 SNSNSTSNSTTNSNSTTTTNSTTSTNSTSSSNSSTIAGCI 326
Score = 27.8 bits (61), Expect = 6.2
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 8 NTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKT 43
+ N+T+N+N+T + N+T ++N+ T T+N+ + T
Sbjct: 112 SANSTSNSNSTTSNNSTTSSNSTTTTSNSTSSSNST 147
>gnl|CDD|237536 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 33.7 bits (78), Expect = 0.090
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 58 TAIMGPSGAGKSTLLNIL 75
T ++GP+GAGKS LL ++
Sbjct: 444 TLVVGPTGAGKSVLLALM 461
Score = 33.7 bits (78), Expect = 0.090
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 200 TAIMGPSGAGKSTLLNIL 217
T ++GP+GAGKS LL ++
Sbjct: 444 TLVVGPTGAGKSVLLALM 461
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 33.3 bits (76), Expect = 0.094
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
L +S + G++ ++G +G+GKSTL NI+ G S T G + NG
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGG-SLSPTVGKVDRNG 85
Score = 27.9 bits (62), Expect = 5.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L +S + G++ ++G +G+GKSTL NI+ G
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGG 72
>gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family
is one of a number of homologous small, well-conserved
GTP-binding proteins with pleiotropic effects. Bacterial
members are designated HflX, following the naming
convention in Escherichia coli where HflX is encoded
immediately downstream of the RNA chaperone Hfq, and
immediately upstream of HflKC, a membrane-associated
protease pair with an important housekeeping function.
Over large numbers of other bacterial genomes, the
pairing with hfq is more significant than with hflK and
hlfC. The gene from Homo sapiens in this family has been
named PGPL (pseudoautosomal GTP-binding protein-like)
[Unknown function, General].
Length = 351
Score = 33.2 bits (77), Expect = 0.096
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 179 NRIHE-KTILKSV--------SGRLRSGELT-AIMGPSGAGKSTLLNILTG 219
RI + K L+ V R R+ T A++G + AGKSTL N LTG
Sbjct: 161 ERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTG 211
Score = 31.3 bits (72), Expect = 0.36
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 51 RLRSGELT-AIMGPSGAGKSTLLNILTG 77
R R+ T A++G + AGKSTL N LTG
Sbjct: 184 RKRADVPTVALVGYTNAGKSTLFNALTG 211
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 33.3 bits (76), Expect = 0.097
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKS-TLLNILTGYKTSGTE 84
++++S L+ GE AI+G SG+GKS T L ++ + +G
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGL 72
Score = 32.5 bits (74), Expect = 0.17
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKST----LLNILTGYKTSGTEGSITINGH------ER 94
++ VS L GE +++G SG+GKST LL ++ G I NG
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV-----ESQGGEIIFNGQRIDTLSPG 394
Query: 95 NLSQFRKLSCYIMQD 109
L R+ +I QD
Sbjct: 395 KLQALRRDIQFIFQD 409
Score = 32.5 bits (74), Expect = 0.21
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKS 211
++++S L+ GE AI+G SG+GKS
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKS 56
Score = 31.4 bits (71), Expect = 0.43
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 177 MYNRI-HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224
+ NR+ E ++ VS L GE +++G SG+GKST TG +LR
Sbjct: 329 LLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKST-----TGRALLR 372
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 33.2 bits (75), Expect = 0.098
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 57 LTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
L I+GP+G+GKS LL L + G G
Sbjct: 1 LNVIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLN 37
Score = 32.0 bits (72), Expect = 0.20
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 199 LTAIMGPSGAGKSTLLNIL 217
L I+GP+G+GKS LL L
Sbjct: 1 LNVIIGPNGSGKSNLLKAL 19
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 33.2 bits (76), Expect = 0.099
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
+K +K + + ++TA++GPSG+GKST L L
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSL 66
Score = 33.2 bits (76), Expect = 0.099
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+K +K + + ++TA++GPSG+GKST L L
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSL 66
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 33.6 bits (77), Expect = 0.11
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 27 TNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLN 73
T + +N LK ++ L G LT + G SG+GKS+L+N
Sbjct: 602 TLSKATKHN---------LKDLTISLPLGRLTVVTGVSGSGKSSLIN 639
Score = 33.3 bits (76), Expect = 0.13
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
LK ++ L G LT + G SG+GKS+L+N
Sbjct: 611 LKDLTISLPLGRLTVVTGVSGSGKSSLIN 639
Score = 28.6 bits (64), Expect = 3.5
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
IH L VS L S L AI G SG+GK++LL
Sbjct: 1503 IHTIQNLN-VSAPLHS--LVAISGVSGSGKTSLL 1533
Score = 27.9 bits (62), Expect = 5.8
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT----------EGSITINGHERNL 96
+VS L S L AI G SG+GK++LL L G+ I ++ H +
Sbjct: 1510 NVSAPLHS--LVAISGVSGSGKTSLL--LEGFYKQACALIEKGPSVFSEIIFLDSHPQIS 1565
Query: 97 SQFRKLSCYIMQDNQL---HANLTVEEAMNVATAL 128
SQ +S Y L +A+LT +A+N++ ++
Sbjct: 1566 SQRSDISTYFDIAPSLRNFYASLTQAKALNISASM 1600
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 33.6 bits (77), Expect = 0.11
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE-GSITING 91
P +L +S + E I+G +GAGKS++LN L ++ E G I I+G
Sbjct: 1249 PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNAL--FRIVELERGRILIDG 1300
Score = 31.6 bits (72), Expect = 0.44
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
E+ L +++ + G L AI+G +G GK++L++ + G ++ S+ I G
Sbjct: 628 AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG 679
Score = 31.2 bits (71), Expect = 0.55
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+L +S + E I+G +GAGKS++LN L
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNAL 1285
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme ethanolamine
ammonia lyase. The function of this gene is unknown,
although the presence of an N-terminal GxxGxGK motif
implies a GTP-binding site [Energy metabolism, Amino
acids and amines].
Length = 142
Score = 32.0 bits (73), Expect = 0.11
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL-RQLWLLEYSHKDL 236
+G G GK+TL L G +IL ++ +EY+ +
Sbjct: 4 MFIGSVGCGKTTLTQALQGEEILYKKTQAVEYNDGAI 40
Score = 29.3 bits (66), Expect = 1.00
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 59 AIMGPSGAGKSTLLNILTGYKT 80
+G G GK+TL L G +
Sbjct: 4 MFIGSVGCGKTTLTQALQGEEI 25
>gnl|CDD|238899 cd01918, HprK_C, HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the
phosphorylation state of the phosphocarrier protein HPr
and regulates the utilization of carbon sources by
gram-positive bacteria. It catalyzes both the
ATP-dependent phosphorylation of Ser-46 of HPr and its
dephosphorylation by phosphorolysis. The latter
reaction uses inorganic phosphate as substrate and
produces pyrophosphate. Phosphoenolpyruvate
carboxykinase (PEPCK) and the C-terminal catalytic
domain of HprK/P are structurally similar with
conserved active site residues suggesting these two
phosphotransferases have related functions. The HprK/P
N-terminal domain is structurally similar to the
N-terminal domains of the MurE and MurF amino acid
ligases.
Length = 149
Score = 32.2 bits (74), Expect = 0.12
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 60 IMGPSGAGKSTL 71
I GPSG GKS L
Sbjct: 19 ITGPSGIGKSEL 30
Score = 32.2 bits (74), Expect = 0.12
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 202 IMGPSGAGKSTL 213
I GPSG GKS L
Sbjct: 19 ITGPSGIGKSEL 30
>gnl|CDD|235825 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 32.4 bits (74), Expect = 0.12
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 43 TILKSVSGRLRSGELTAIM--GPSGAGKSTLLNILTG 77
++ ++ RL G + ++ G SG+GK+TL L
Sbjct: 1 MLVALIAARLCGGGMITVLIDGRSGSGKTTLAGALAA 37
Score = 32.4 bits (74), Expect = 0.12
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 185 TILKSVSGRLRSGELTAIM--GPSGAGKSTLLNILTG 219
++ ++ RL G + ++ G SG+GK+TL L
Sbjct: 1 MLVALIAARLCGGGMITVLIDGRSGSGKTTLAGALAA 37
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 32.8 bits (75), Expect = 0.12
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 200 TAIMGPSGAGKSTLLNILTGYKILR 224
I+GPSG+GKSTLL +L + R
Sbjct: 4 MLIVGPSGSGKSTLLKLLALRLLAR 28
Score = 32.4 bits (74), Expect = 0.15
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 58 TAIMGPSGAGKSTLLNILT 76
I+GPSG+GKSTLL +L
Sbjct: 4 MLIVGPSGSGKSTLLKLLA 22
>gnl|CDD|220296 pfam09580, Spore_YhcN_YlaJ, Sporulation lipoprotein YhcN/YlaJ
(Spore_YhcN_YlaJ). This entry contains YhcN and YlaJ,
which are predicted lipoproteins that have been
detected as spore proteins but not vegetative proteins
in Bacillus subtilis. Both appear to be expressed under
control of the RNA polymerase sigma-G factor. The
YlaJ-like members of this family have a low-complexity,
strongly acidic, 40-residue C-terminal domain.
Length = 169
Score = 31.9 bits (73), Expect = 0.14
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 8 NTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNE 41
NTNN NN NN NN N N T N N
Sbjct: 29 NTNNVNNRNNRNNNNGYGRLTKNNVTGENGYNNI 62
Score = 29.6 bits (67), Expect = 1.0
Identities = 11/43 (25%), Positives = 12/43 (27%)
Query: 1 MNSQEYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKT 43
N N NN NN NN N N N +
Sbjct: 25 DNDGNTNNVNNRNNRNNNNGYGRLTKNNVTGENGYNNIERGEV 67
Score = 27.3 bits (61), Expect = 4.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 9 TNNTNNTNNTNNTNNTNNTNTNTNTNNN 36
T+N NTNN NN NN NN N N
Sbjct: 24 TDNDGNTNNVNNRNNRNNNNGYGRLTKN 51
Score = 27.3 bits (61), Expect = 4.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 8 NTNNTNNTNNTNNTNNTNNTNTNTNTNNN 36
+ N N T+N NTNN NN N N N
Sbjct: 17 DDNRQNVTDNDGNTNNVNNRNNRNNNNGY 45
Score = 26.9 bits (60), Expect = 6.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 2 NSQEYVNTNNTNNTNNTNNTNNTNNTNTNTNTNN 35
+ + N T+N NTNN NN NN N N
Sbjct: 14 AADDDNRQNVTDNDGNTNNVNNRNNRNNNNGYGR 47
>gnl|CDD|206666 cd01878, HflX, HflX GTPase family. HflX subfamily. A distinct
conserved domain with a glycine-rich segment N-terminal
of the GTPase domain characterizes the HflX subfamily.
The E. coli HflX has been implicated in the control of
the lambda cII repressor proteolysis, but the actual
biological functions of these GTPases remain unclear.
HflX is widespread, but not universally represented in
all three superkingdoms.
Length = 204
Score = 32.4 bits (75), Expect = 0.14
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 49 SGRLRSGELT-AIMGPSGAGKSTLLNILTG 77
+ R RSG T A++G + AGKSTL N LTG
Sbjct: 34 ARRKRSGVPTVALVGYTNAGKSTLFNALTG 63
Score = 32.4 bits (75), Expect = 0.14
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 191 SGRLRSGELT-AIMGPSGAGKSTLLNILTG 219
+ R RSG T A++G + AGKSTL N LTG
Sbjct: 34 ARRKRSGVPTVALVGYTNAGKSTLFNALTG 63
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 32.8 bits (75), Expect = 0.16
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILT 76
L + I+GP+GAGKS++L+ +T
Sbjct: 22 LFDSGIFLIVGPNGAGKSSILDAIT 46
Score = 32.8 bits (75), Expect = 0.16
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILT 218
L + I+GP+GAGKS++L+ +T
Sbjct: 22 LFDSGIFLIVGPNGAGKSSILDAIT 46
>gnl|CDD|218528 pfam05272, VirE, Virulence-associated protein E. This family
contains several bacterial virulence-associated protein
E like proteins. These proteins contain a P-loop motif.
Length = 198
Score = 32.0 bits (73), Expect = 0.17
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 28/108 (25%)
Query: 62 GPSGAGKSTLLNILTGY-------KTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHA 114
G G+GKST L L G G + + G +I++ +L
Sbjct: 59 GAQGSGKSTFLKKLGGEWFTDSIRSFEGKDAYEKLQG------------VWIVEIAEL-- 104
Query: 115 NLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSG 162
+ + A + +T+ D R + R + ++C G
Sbjct: 105 -----DGFSKAEVEAIKAFITR--TVDSFRAPYGRRAESFPRQCVFVG 145
Score = 28.9 bits (65), Expect = 2.0
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 15/44 (34%)
Query: 204 GPSGAGKSTLLNILTG---------------YKILRQLWLLEYS 232
G G+GKST L L G Y+ L+ +W++E +
Sbjct: 59 GAQGSGKSTFLKKLGGEWFTDSIRSFEGKDAYEKLQGVWIVEIA 102
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 32.4 bits (74), Expect = 0.17
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 48 VSGRLRSGELTAIMGPSGAGKS----TLLNILTGYKTSGTEGSITINGHERNLSQFR-KL 102
VS L+ G + A++G SG+GKS L IL T G + ++G R +
Sbjct: 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPA-GVRQTAGRVLLDGKPVAPCALRGRK 80
Query: 103 SCYIMQD 109
IMQ+
Sbjct: 81 IATIMQN 87
Score = 29.7 bits (67), Expect = 1.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 190 VSGRLRSGELTAIMGPSGAGKS 211
VS L+ G + A++G SG+GKS
Sbjct: 22 VSLTLQRGRVLALVGGSGSGKS 43
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 32.4 bits (74), Expect = 0.17
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
L+ G + E+ I+GP+G GK+T + +L G
Sbjct: 15 LEVEGGSISESEVIGILGPNGIGKTTFIKMLAG 47
Score = 32.4 bits (74), Expect = 0.17
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L+ G + E+ I+GP+G GK+T + +L G
Sbjct: 15 LEVEGGSISESEVIGILGPNGIGKTTFIKMLAG 47
>gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of
preribosomal RNA processing complexes. Bms1 is an
essential, evolutionarily conserved, nucleolar protein.
Its depletion interferes with processing of the 35S
pre-rRNA at sites A0, A1, and A2, and the formation of
40S subunits. Bms1, the putative endonuclease Rc11, and
the essential U3 small nucleolar RNA form a stable
subcomplex that is believed to control an early step in
the formation of the 40S subumit. The C-terminal domain
of Bms1 contains a GTPase-activating protein (GAP) that
functions intramolecularly. It is believed that Rc11
activates Bms1 by acting as a guanine-nucleotide
exchange factor (GEF) to promote GDP/GTP exchange, and
that activated (GTP-bound) Bms1 delivers Rc11 to the
preribosomes.
Length = 231
Score = 31.9 bits (73), Expect = 0.18
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 57 LTAIMGPSGAGKSTLLNIL----TGYKTSGTEGSITI 89
+ ++GP G GKSTL+ L T S +G ITI
Sbjct: 41 VVVVVGPPGVGKSTLIRSLIKRYTKQNLSDIKGPITI 77
Score = 27.3 bits (61), Expect = 6.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 199 LTAIMGPSGAGKSTLLNIL 217
+ ++GP G GKSTL+ L
Sbjct: 41 VVVVVGPPGVGKSTLIRSL 59
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 31.7 bits (73), Expect = 0.19
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 57 LTAIMGPSGAGKSTLLNIL 75
L I GPSGAGKSTL+ L
Sbjct: 2 LIVISGPSGAGKSTLVKAL 20
Score = 31.7 bits (73), Expect = 0.19
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 199 LTAIMGPSGAGKSTLLNIL 217
L I GPSGAGKSTL+ L
Sbjct: 2 LIVISGPSGAGKSTLVKAL 20
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 29.8 bits (68), Expect = 0.19
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 58 TAIMGPSGAGKSTLL 72
T + GPSG+GKSTL+
Sbjct: 24 TLLTGPSGSGKSTLI 38
Score = 29.8 bits (68), Expect = 0.19
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 200 TAIMGPSGAGKSTLL 214
T + GPSG+GKSTL+
Sbjct: 24 TLLTGPSGSGKSTLI 38
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 265
Score = 31.9 bits (72), Expect = 0.22
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLL 72
LK+++ + ++TA++GPSG GKST L
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFL 59
Score = 31.9 bits (72), Expect = 0.22
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL 214
LK+++ + ++TA++GPSG GKST L
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFL 59
>gnl|CDD|173172 PRK14709, PRK14709, hypothetical protein; Provisional.
Length = 469
Score = 32.0 bits (73), Expect = 0.24
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTG----YKTSGTEGSITINGHER 94
++G R L + G G GKS LN+L G Y T+ + T + H+R
Sbjct: 197 CLTGDTREHALVFVFGGGGNGKSVFLNVLAGILGDYATTAAMDTFTASKHDR 248
Score = 30.1 bits (68), Expect = 1.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++G R L + G G GKS LN+L G
Sbjct: 197 CLTGDTREHALVFVFGGGGNGKSVFLNVLAG 227
>gnl|CDD|221093 pfam11359, gpUL132, Glycoprotein UL132. Glycoprotein UL132 is a
low-abundance structural component of Human
cytomegalovirus (HCMV). The function of this protein is
not fully understood.
Length = 235
Score = 31.6 bits (71), Expect = 0.25
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 12 TNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMG 62
T++T NT T T+ + N T L + + LT ++G
Sbjct: 2 TSSTTTPANTTATVTVTVATSNTTSVSTNVTTALTASTTAEPGSVLTELLG 52
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of
non-transporter proteins. ABC-type Class 2 contains
systems involved in cellular processes other than
transport. These families are characterized by the fact
that the ABC subunit is made up of duplicated, fused
ABC modules (ABC2). No known transmembrane proteins or
domains are associated with these proteins.
Length = 162
Score = 31.2 bits (71), Expect = 0.25
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 54 SGELTAIMGPSGAGKSTLLN 73
G LT I GP+G+GKST+L+
Sbjct: 20 EGSLTIITGPNGSGKSTILD 39
Score = 31.2 bits (71), Expect = 0.25
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 196 SGELTAIMGPSGAGKSTLLN 215
G LT I GP+G+GKST+L+
Sbjct: 20 EGSLTIITGPNGSGKSTILD 39
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 31.6 bits (73), Expect = 0.26
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 59 AIMGPSGAGKSTL 71
AI GP+G+GK T+
Sbjct: 8 AIDGPAGSGKGTV 20
Score = 31.6 bits (73), Expect = 0.26
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 201 AIMGPSGAGKSTL 213
AI GP+G+GK T+
Sbjct: 8 AIDGPAGSGKGTV 20
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins
[General function prediction only].
Length = 219
Score = 31.5 bits (71), Expect = 0.26
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 59 AIMGPSGAGKSTLLNILTGYKTSGTEGSITI 89
++G G GK+TLLN L G + TI
Sbjct: 9 VVLGDGGVGKTTLLNRLVGDEFP-EGYPPTI 38
Score = 30.7 bits (69), Expect = 0.49
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 201 AIMGPSGAGKSTLLNILTGYK 221
++G G GK+TLLN L G +
Sbjct: 9 VVLGDGGVGKTTLLNRLVGDE 29
>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. In E. coli,
mutation of this kinase blocks phosphorylation of two
transporter system periplasmic binding proteins and
consequently inhibits those transporters. This kinase
is also found in Gram-positive bacteria, archaea, and
the roundworm C. elegans. It may have a more general,
but still unknown function. Mutations have also been
found that do not phosphorylate the periplasmic binding
proteins, yet still allow transport. The ATPase
activity of this protein seems to be necessary, however
[Transport and binding proteins, Amino acids, peptides
and amines, Regulatory functions, Protein
interactions].
Length = 300
Score = 31.7 bits (72), Expect = 0.26
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 36 NCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 76
N P K +L + + I G GAGKSTLL L
Sbjct: 15 NRHPEAKELLDRIMPYTGNAHRVGITGTPGAGKSTLLEALG 55
Score = 28.2 bits (63), Expect = 3.5
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT------GYKI 222
K +L + + I G GAGKSTLL L G ++
Sbjct: 21 KELLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLRV 65
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 251
Score = 31.7 bits (72), Expect = 0.28
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLL---NILTGYKTS-GTEGSITING 91
K IL ++ + E+TA +GPSG GKST L N + + + +G + I+G
Sbjct: 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG 71
Score = 31.3 bits (71), Expect = 0.29
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
K IL ++ + E+TA +GPSG GKST L
Sbjct: 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFL 48
>gnl|CDD|172418 PRK13898, PRK13898, type IV secretion system ATPase VirB4;
Provisional.
Length = 800
Score = 32.0 bits (73), Expect = 0.32
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 58 TAIMGPSGAGKSTLLNIL 75
T I+GP+GAGK+ L+N L
Sbjct: 449 TLIIGPTGAGKTVLMNFL 466
Score = 32.0 bits (73), Expect = 0.32
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 200 TAIMGPSGAGKSTLLNIL 217
T I+GP+GAGK+ L+N L
Sbjct: 449 TLIIGPTGAGKTVLMNFL 466
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 30.7 bits (70), Expect = 0.32
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 60 IMGPSGAGKST 70
+MG SG+GKST
Sbjct: 4 VMGVSGSGKST 14
Score = 30.7 bits (70), Expect = 0.32
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 202 IMGPSGAGKST 212
+MG SG+GKST
Sbjct: 4 VMGVSGSGKST 14
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 31.7 bits (72), Expect = 0.32
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 35 NNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI 89
+ + NE L ++S ++ I+G SG+GKSTL+ G S G+I +
Sbjct: 32 DEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS-KYGTIQV 85
Score = 29.0 bits (65), Expect = 2.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ +E L ++S ++ I+G SG+GKSTL+ G
Sbjct: 34 KQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG 74
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 31.9 bits (72), Expect = 0.33
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER----NLSQF 99
I K ++ L G+ A +G SG GKST+L ++ TEG I IN NL +
Sbjct: 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP-TEGDIIINDSHNLKDINLKWW 458
Query: 100 RKLSCYIMQDNQLHAN 115
R + QD L +N
Sbjct: 459 RSKIGVVSQDPLLFSN 474
Score = 29.2 bits (65), Expect = 2.3
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224
I K ++ S + TAI+G +G+GKST++++L + L+
Sbjct: 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLK 1221
Score = 29.2 bits (65), Expect = 2.4
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
I K ++ S + TAI+G +G+GKST++++L
Sbjct: 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLL 1214
Score = 28.1 bits (62), Expect = 5.1
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 10 NNTNNTNNTNNTNNTNNTNTNTNTNN 35
N NN N + NN NN N N NN
Sbjct: 674 NKENNNKNNKDDNNNNNNNNNNKINN 699
Score = 27.7 bits (61), Expect = 7.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
Y+ + I K ++ L G+ A +G SG GKST+L ++
Sbjct: 392 YDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI 431
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 31.2 bits (70), Expect = 0.34
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI 89
++ G TA++G +G+GKSTLL L G TEG +T+
Sbjct: 29 VKKGSYTALIGHTGSGKSTLLQHLNGL-LQPTEGKVTV 65
Score = 30.5 bits (68), Expect = 0.63
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTG 219
++ G TA++G +G+GKSTLL L G
Sbjct: 29 VKKGSYTALIGHTGSGKSTLLQHLNG 54
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 31.1 bits (71), Expect = 0.35
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILT 76
L + L I GP+GAGKST+L+ +T
Sbjct: 25 LDNNGLFLICGPTGAGKSTILDAIT 49
Score = 31.1 bits (71), Expect = 0.35
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILT 218
L + L I GP+GAGKST+L+ +T
Sbjct: 25 LDNNGLFLICGPTGAGKSTILDAIT 49
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 31.6 bits (72), Expect = 0.35
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITINGHE------RNLSQFR--K 101
LR+GE I+G SG+GKS L G GS T NG E + L++ R +
Sbjct: 39 LRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQ 98
Query: 102 LSCYIMQD--NQLHANLTV-EEAMNVATALKLGKDLTKA-ARKDVVRTL 146
+S I QD L+ + V E+ M V L L K ++KA A ++ VR L
Sbjct: 99 IS-MIFQDPMTSLNPYMRVGEQLMEV---LMLHKGMSKAEAFEESVRML 143
Score = 27.0 bits (60), Expect = 9.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 194 LRSGELTAIMGPSGAGKS 211
LR+GE I+G SG+GKS
Sbjct: 39 LRAGETLGIVGESGSGKS 56
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 31.7 bits (72), Expect = 0.41
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 54 SGELTAIMGPSGAGKSTLLN 73
S L AI GP+GAGK+TLL+
Sbjct: 29 SNGLFAITGPTGAGKTTLLD 48
Score = 31.7 bits (72), Expect = 0.41
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 196 SGELTAIMGPSGAGKSTLLN 215
S L AI GP+GAGK+TLL+
Sbjct: 29 SNGLFAITGPTGAGKTTLLD 48
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 31.4 bits (71), Expect = 0.44
Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Query: 59 AIMGPSGAGKSTLLNILTG--YKTSGT 83
A++GP+G GKST+L +++G +SGT
Sbjct: 539 AMVGPNGIGKSTILKLISGELQPSSGT 565
Score = 29.8 bits (67), Expect = 1.5
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 201 AIMGPSGAGKSTLLNILTG 219
A++GP+G GKST+L +++G
Sbjct: 539 AMVGPNGIGKSTILKLISG 557
>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This
domain is found in HypB, a hydrogenase expression /
formation protein, and UreG a urease accessory protein.
Both these proteins contain a P-loop nucleotide binding
motif. HypB has GTPase activity and is a guanine
nucleotide binding protein. It is not known whether UreG
binds GTP or some other nucleotide. Both enzymes are
involved in nickel binding. HypB can store nickel and is
required for nickel dependent hydrogenase expression.
UreG is required for functional incorporation of the
urease nickel metallocenter. GTP hydrolysis may required
by these proteins for nickel incorporation into other
nickel proteins. This family of domains also contains
P47K, a Pseudomonas chlororaphis protein needed for
nitrile hydratase expression, and the cobW gene product,
which may be involved in cobalamin biosynthesis in
Pseudomonas denitrificans.
Length = 178
Score = 30.7 bits (70), Expect = 0.44
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 200 TAIMGPSGAGKSTLLNILT-----GYKI 222
T + G G+GK+TLL L G KI
Sbjct: 3 TVLTGFLGSGKTTLLEHLLEKNREGLKI 30
Score = 29.9 bits (68), Expect = 0.84
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 58 TAIMGPSGAGKSTLLN 73
T + G G+GK+TLL
Sbjct: 3 TVLTGFLGSGKTTLLE 18
>gnl|CDD|233448 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
adenylyltransferase, NadR type. The NadR protein of E.
coli and closely related bacteria is both enzyme and
regulatory protein. The first 60 or so amino acids,
N-terminal to the region covered by this model, is a
DNA-binding helix-turn-helix domain (pfam01381)
responsible for repressing the nadAB genes of NAD de
novo biosynthesis. The NadR homologs in Mycobacterium
tuberculosis, Haemophilus influenzae, and others appear
to lack the repressor domain. NadR has recently been
shown to act as an enzyme of the salvage pathway of NAD
biosynthesis, nicotinamide-nucleotide
adenylyltransferase; members of this family are presumed
to share this activity. E. coli NadR has also been found
to regulate the import of its substrate, nicotinamide
ribonucleotide, but it is not known if the other members
of this model share that activity.
Length = 325
Score = 31.0 bits (70), Expect = 0.46
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQLWLLEY 231
AI+G GKSTL+N L + EY
Sbjct: 166 AILGGESTGKSTLVNKLA--AVFNTTSAWEY 194
>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 30.7 bits (70), Expect = 0.46
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 204 GPSGAGKSTLLNILTGYKILRQL 226
G SG+GKST+ N L + L
Sbjct: 30 GLSGSGKSTIANAL--EEKLFAK 50
Score = 28.8 bits (65), Expect = 2.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 62 GPSGAGKSTLLNIL 75
G SG+GKST+ N L
Sbjct: 30 GLSGSGKSTIANAL 43
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 30.6 bits (69), Expect = 0.49
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
E+ L +S +T I G +G GKS+LL ++ G + G+I N++
Sbjct: 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIM-QPSSGNIYY--KNCNINNIA 68
Query: 101 KLSC-YIMQDNQLHANLTVEE 120
K C YI + L +TV E
Sbjct: 69 KPYCTYIGHNLGLKLEMTVFE 89
>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE. TrmE,
also called MnmE and previously designated ThdF
(thiophene and furan oxidation protein), is a GTPase
involved in tRNA modification to create
5-methylaminomethyl-2-thiouridine in the wobble position
of some tRNAs. This protein and GidA form an
alpha2/beta2 heterotetramer [Protein synthesis, tRNA and
rRNA base modification].
Length = 442
Score = 31.3 bits (71), Expect = 0.49
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 51 RLRSGELTAIMGPSGAGKSTLLN--------ILTGYKTSG---TEGSITINGHERNL 96
+L G AI+G GKS+LLN I++ K + EG +NG L
Sbjct: 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKL 255
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 30.8 bits (70), Expect = 0.53
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 57 LTAIMGPSGAGKSTLLNIL 75
+TA +GPSG GKST+L L
Sbjct: 32 VTAFIGPSGCGKSTVLRTL 50
Score = 30.8 bits (70), Expect = 0.53
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 199 LTAIMGPSGAGKSTLLNIL 217
+TA +GPSG GKST+L L
Sbjct: 32 VTAFIGPSGCGKSTVLRTL 50
>gnl|CDD|178152 PLN02537, PLN02537, diaminopimelate decarboxylase.
Length = 410
Score = 30.9 bits (70), Expect = 0.58
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPS---GAGKSTLLNILTGYKTSGTEGSITING 91
P + ++ +V + S +LT I+ P A +N +TG KT+GT+ I I+G
Sbjct: 243 PTPRDLIDTVRELVLSRDLTLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFIVIDG 298
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 30.7 bits (70), Expect = 0.60
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 42 KTILKSVSGRLRSGE---LTAIMGPSGAGKSTL 71
K +L+ ++ + + I GP GAGKSTL
Sbjct: 17 KPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTL 49
Score = 30.7 bits (70), Expect = 0.60
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 184 KTILKSVSGRLRSGE---LTAIMGPSGAGKSTL 213
K +L+ ++ + + I GP GAGKSTL
Sbjct: 17 KPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTL 49
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the
ABC transporter family include the Walker A and Walker
B motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known
as the ABC signature sequence.
Length = 204
Score = 30.3 bits (69), Expect = 0.61
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 57 LTAIMGPSGAGKSTLL 72
LT I+G +GAGK+T++
Sbjct: 24 LTLIVGQNGAGKTTII 39
Score = 30.3 bits (69), Expect = 0.61
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 199 LTAIMGPSGAGKSTLL 214
LT I+G +GAGK+T++
Sbjct: 24 LTLIVGQNGAGKTTII 39
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 30.8 bits (69), Expect = 0.63
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 1 MNSQEYVNTNNTNNTNNTNNTNNTNN----TNTNTNTNNNCEPNEKTILK 46
M +E+ N +N N N N N N N + N N + N ++K
Sbjct: 1 MYDREFGTGNGYSNGNGYTNGNGHTNGNGNYNGNGHVNGNGKANGAKVVK 50
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 30.7 bits (69), Expect = 0.63
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 172 LLALA-MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ----- 225
+LA + ++ R ++ +LK ++ +T ++G +G GKSTL L+G +LR
Sbjct: 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG--LLRPQKGAV 58
Query: 226 LW---LLEYSHKDLALCR 240
LW L+YS + L R
Sbjct: 59 LWQGKPLDYSKRGLLALR 76
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 30.2 bits (69), Expect = 0.63
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 59 AIMGPSGAGKSTL 71
AI GP+G+GKST+
Sbjct: 8 AIDGPAGSGKSTV 20
Score = 30.2 bits (69), Expect = 0.63
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 201 AIMGPSGAGKSTL 213
AI GP+G+GKST+
Sbjct: 8 AIDGPAGSGKSTV 20
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 30.4 bits (68), Expect = 0.66
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE---RNLSQFRK 101
L VS + GE +I+G +G+GKST ++ G EG + I+G N+ R+
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-FEGKVKIDGELLTAENVWNLRR 81
Query: 102 LSCYIMQ--DNQLHANLTVEE 120
+ Q DNQ TVE+
Sbjct: 82 KIGMVFQNPDNQF-VGATVED 101
Score = 28.1 bits (62), Expect = 4.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
Y + + L VS + GE +I+G +G+GKST ++ G
Sbjct: 14 YEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDG 55
>gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP;
Provisional.
Length = 158
Score = 29.9 bits (67), Expect = 0.66
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 201 AIMGPSGAGKSTLLNILTG-YKILRQLWLLEYSHK 234
A +G GAGK+TL N L G Y + R+ +E++ K
Sbjct: 5 AFVGAVGAGKTTLFNALQGNYTLARKTQAVEFNDK 39
Score = 26.9 bits (59), Expect = 6.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 59 AIMGPSGAGKSTLLNILTG 77
A +G GAGK+TL N L G
Sbjct: 5 AFVGAVGAGKTTLFNALQG 23
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 30.6 bits (70), Expect = 0.66
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 60 IM--GPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLT 117
IM G SG GKST +N L G K ++ H + + +++N + LT
Sbjct: 7 IMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISK-AELEENGVKLKLT 65
Query: 118 V 118
V
Sbjct: 66 V 66
Score = 28.7 bits (65), Expect = 2.6
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 202 IM--GPSGAGKSTLLNILTGYKILR 224
IM G SG GKST +N L G K+
Sbjct: 7 IMVVGESGLGKSTFINTLFGTKLYP 31
>gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
Members of this protein were designated YjeQ and are now
designated RsgA (ribosome small subunit-dependent GTPase
A). The strongest motif in the alignment of these
proteins is GXSGVGKS[ST], a classic P-loop for
nucleotide binding. This protein has been shown to
cleave GTP and remain bound to GDP. A role as a
regulator of translation has been suggested. The Aquifex
aeolicus ortholog is split into consecutive open reading
frames. Consequently, this model was build in fragment
mode (-f option) [Protein synthesis, Translation
factors].
Length = 245
Score = 30.5 bits (69), Expect = 0.68
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 54 SGELTAIMGPSGAGKSTLLNIL 75
++ G SG GKS+L+N L
Sbjct: 119 QNRISVFAGQSGVGKSSLINAL 140
Score = 30.5 bits (69), Expect = 0.68
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 196 SGELTAIMGPSGAGKSTLLNIL 217
++ G SG GKS+L+N L
Sbjct: 119 QNRISVFAGQSGVGKSSLINAL 140
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 30.2 bits (68), Expect = 0.69
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 57 LTAIMGPSGAGKSTLLN 73
LT I GP+G+GK+T+L+
Sbjct: 21 LTLIYGPNGSGKTTILD 37
Score = 30.2 bits (68), Expect = 0.69
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 199 LTAIMGPSGAGKSTLLN 215
LT I GP+G+GK+T+L+
Sbjct: 21 LTLIYGPNGSGKTTILD 37
>gnl|CDD|215965 pfam00516, GP120, Envelope glycoprotein GP120. The entry of HIV
requires interaction of viral GP120 with CD4 and a
chemokine receptor on the cell surface.
Length = 493
Score = 30.8 bits (70), Expect = 0.71
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 1 MNSQEYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEK 42
MN + N T T NT +T + + ++NC EK
Sbjct: 89 MNCTD-TNGTATTTTTNTTSTTTIISETSYCIVDDNCTEMEK 129
>gnl|CDD|236648 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.
Length = 186
Score = 30.1 bits (68), Expect = 0.71
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 55 GELTAIMGPSGAGKSTLLNIL 75
G+L +MGPSG+GK +LL L
Sbjct: 2 GKLIWLMGPSGSGKDSLLAAL 22
Score = 30.1 bits (68), Expect = 0.71
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 197 GELTAIMGPSGAGKSTLLNIL 217
G+L +MGPSG+GK +LL L
Sbjct: 2 GKLIWLMGPSGSGKDSLLAAL 22
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 246
Score = 30.4 bits (68), Expect = 0.73
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITIN 90
TN N +K L ++ ++ ++TA++G SG GKST L K + +G + I
Sbjct: 6 TNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIE 65
Query: 91 GHE 93
G +
Sbjct: 66 GKD 68
Score = 27.3 bits (60), Expect = 6.3
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KILRQLWLLEYSHKDL 236
+K L ++ ++ ++TA++G SG GKST L KI + L+E KD+
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de
novo or salvage biosynthesis of thymidine triphosphate
(TTP).
Length = 200
Score = 29.9 bits (68), Expect = 0.75
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 59 AIMGPSGAGKSTLLNILTGY 78
G GAGK+TL+ +L
Sbjct: 4 VFEGIDGAGKTTLIELLAER 23
Score = 29.9 bits (68), Expect = 0.75
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 201 AIMGPSGAGKSTLLNILTGY 220
G GAGK+TL+ +L
Sbjct: 4 VFEGIDGAGKTTLIELLAER 23
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 30.3 bits (69), Expect = 0.75
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTL 213
R H LK+V + +L I G SG+GKS+L
Sbjct: 7 REHN---LKNVDVDIPRNKLVVITGVSGSGKSSL 37
Score = 29.9 bits (68), Expect = 0.93
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTL 71
LK+V + +L I G SG+GKS+L
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSL 37
>gnl|CDD|227297 COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF
[Intracellular trafficking and secretion].
Length = 355
Score = 30.4 bits (69), Expect = 0.79
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSGTEGSITI 89
I G +G+GK+TLLN L+G+ S E ITI
Sbjct: 178 ISGGTGSGKTTLLNALSGFIDS-DERVITI 206
Score = 28.1 bits (63), Expect = 4.3
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 202 IMGPSGAGKSTLLNILTGYK 221
I G +G+GK+TLLN L+G+
Sbjct: 178 ISGGTGSGKTTLLNALSGFI 197
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and
host eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 29.9 bits (68), Expect = 0.80
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 60 IMGPSGAGKSTLLNILTGY 78
I G +G+GK+TLLN L +
Sbjct: 30 ISGGTGSGKTTLLNALLAF 48
Score = 29.9 bits (68), Expect = 0.80
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 202 IMGPSGAGKSTLLNILTGY 220
I G +G+GK+TLLN L +
Sbjct: 30 ISGGTGSGKTTLLNALLAF 48
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 29.2 bits (66), Expect = 0.81
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNIL 75
R + + G SG+GK+TLL L
Sbjct: 1 RRGAGIGVLTGESGSGKTTLLRRL 24
Score = 29.2 bits (66), Expect = 0.81
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNIL 217
R + + G SG+GK+TLL L
Sbjct: 1 RRGAGIGVLTGESGSGKTTLLRRL 24
>gnl|CDD|206690 cd04104, p47_IIGP_like, p47 GTPase family includes IGTP,
TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. The p47
GTPase family consists of several highly homologous
proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI,
LRG-47, and IIGP1. They are found in higher eukaryotes
where they play a role in immune resistance against
intracellular pathogens. p47 proteins exist at low
resting levels in mouse cells, but are strongly induced
by Type II interferon (IFN-gamma). ITGP is critical for
resistance to Toxoplasma gondii infection and in
involved in inhibition of Coxsackievirus-B3-induced
apoptosis. TGTP was shown to limit vesicular stomatitis
virus (VSV) infection of fibroblasts in vitro. IRG-47
is involved in resistance to T. gondii infection.
LRG-47 has been implicated in resistance to T. gondii,
Listeria monocytogenes, Leishmania, and mycobacterial
infections. IIGP1 has been shown to localize to the ER
and to the Golgi membranes in IFN-induced cells and
inflamed tissues. In macrophages, IIGP1 interacts with
hook3, a microtubule binding protein that participates
in the organization of the cis-Golgi compartment.
Length = 197
Score = 30.0 bits (68), Expect = 0.88
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 59 AIMGPSGAGKSTLLNILTG 77
A+ G SGAGKS+ +N L G
Sbjct: 5 AVTGESGAGKSSFINALRG 23
Score = 30.0 bits (68), Expect = 0.88
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 201 AIMGPSGAGKSTLLNILTG 219
A+ G SGAGKS+ +N L G
Sbjct: 5 AVTGESGAGKSSFINALRG 23
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 29.4 bits (67), Expect = 0.89
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 59 AIMGPSGAGKSTL 71
AI GP+G+GKST+
Sbjct: 3 AIDGPAGSGKSTV 15
Score = 29.4 bits (67), Expect = 0.89
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 201 AIMGPSGAGKSTL 213
AI GP+G+GKST+
Sbjct: 3 AIDGPAGSGKSTV 15
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 29.9 bits (68), Expect = 0.90
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 201 AIMGPSGAGKSTLLNILT---GYKIL 223
+ G GAGKSTL L GY+++
Sbjct: 3 VVEGNIGAGKSTLAKELAEHLGYEVV 28
Score = 29.5 bits (67), Expect = 1.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 59 AIMGPSGAGKSTLLNIL 75
+ G GAGKSTL L
Sbjct: 3 VVEGNIGAGKSTLAKEL 19
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 30.4 bits (69), Expect = 0.93
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 60 IMGPSGAGKSTLLN 73
++GP G+GK+TLL
Sbjct: 116 VIGPPGSGKTTLLQ 129
Score = 30.4 bits (69), Expect = 0.93
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 202 IMGPSGAGKSTLLN 215
++GP G+GK+TLL
Sbjct: 116 VIGPPGSGKTTLLQ 129
>gnl|CDD|206728 cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP1)-like family
includes GTPBP2. Mammalian GTP binding protein 1
(GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1
are GTPases whose specific functions remain unknown. In
mouse, GTPBP1 is expressed in macrophages, in smooth
muscle cells of various tissues and in some neurons of
the cerebral cortex; GTPBP2 tissue distribution appears
to overlap that of GTPBP1. In human leukemia and
macrophage cell lines, expression of both GTPBP1 and
GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The
chromosomal location of both genes has been identified
in humans, with GTPBP1 located in chromosome 22q12-13.1
and GTPBP2 located in chromosome 6p21-12. Human
glioblastoma multiforme (GBM), a highly-malignant
astrocytic glioma and the most common cancer in the
central nervous system, has been linked to chromosomal
deletions and a translocation on chromosome 6. The GBM
translocation results in a fusion of GTPBP2 and PTPRZ1,
a protein involved in oligodendrocyte differentiation,
recovery, and survival. This fusion product may
contribute to the onset of GBM.
Length = 224
Score = 30.0 bits (68), Expect = 0.94
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 59 AIMGPSGAGKSTLLNILT 76
A++G AGKSTLL +LT
Sbjct: 3 AVVGNVDAGKSTLLGVLT 20
Score = 30.0 bits (68), Expect = 0.94
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 201 AIMGPSGAGKSTLLNILT 218
A++G AGKSTLL +LT
Sbjct: 3 AVVGNVDAGKSTLLGVLT 20
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA
and the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial
binding of EF-G as well. The dissociation of EF-G
leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 29.9 bits (68), Expect = 0.98
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 59 AIMGPSGAGKSTLL 72
A++G SG+GK+TL
Sbjct: 3 ALVGHSGSGKTTLA 16
Score = 29.9 bits (68), Expect = 0.98
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 201 AIMGPSGAGKSTLL 214
A++G SG+GK+TL
Sbjct: 3 ALVGHSGSGKTTLA 16
>gnl|CDD|236022 PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated.
Length = 365
Score = 30.0 bits (68), Expect = 0.98
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 183 EKTILKSV-SGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLL 229
E +L + SGRL L I GP G GK+TL Y++ R +LL
Sbjct: 28 EAALLDAYRSGRLHHAWL--IGGPQGIGKATL-----AYRMAR--FLL 66
Score = 28.8 bits (65), Expect = 2.3
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 41 EKTILKSV-SGRLRSGELTAIMGPSGAGKSTL 71
E +L + SGRL L I GP G GK+TL
Sbjct: 28 EAALLDAYRSGRLHHAWL--IGGPQGIGKATL 57
>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed.
Length = 287
Score = 30.1 bits (69), Expect = 0.99
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 184 KTILKSVSGRLRSGEL------TAIMGPSGAGKSTLLNILTGYKIL 223
K +LK + R ++ + I+G GKSTL+N L G KI
Sbjct: 102 KKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIA 147
Score = 27.8 bits (63), Expect = 5.3
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 42 KTILKSVSGRLRSGEL------TAIMGPSGAGKSTLLNILTG 77
K +LK + R ++ + I+G GKSTL+N L G
Sbjct: 102 KKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAG 143
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 28.9 bits (65), Expect = 1.0
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 201 AIMGPSGAGKSTLLNIL---TGYKI 222
I G G+GK+TL L G +
Sbjct: 2 LITGTPGSGKTTLAKELAERLGDVL 26
Score = 28.6 bits (64), Expect = 1.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 59 AIMGPSGAGKSTLLNIL 75
I G G+GK+TL L
Sbjct: 2 LITGTPGSGKTTLAKEL 18
>gnl|CDD|235450 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional.
Length = 288
Score = 30.1 bits (69), Expect = 1.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 60 IMGPSGAGKSTLLNIL 75
+ G SGAGKS L L
Sbjct: 11 VTGLSGAGKSVALRAL 26
Score = 30.1 bits (69), Expect = 1.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 202 IMGPSGAGKSTLLNIL 217
+ G SGAGKS L L
Sbjct: 11 VTGLSGAGKSVALRAL 26
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 30.3 bits (68), Expect = 1.1
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
K L ++ + G L AI+G +G GK++L++ + G + S+ I G
Sbjct: 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG 679
Score = 28.8 bits (64), Expect = 3.0
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE-GSITINGHER--- 94
P +L +S + E ++G +GAGKS++LN L ++ E G I I+ +
Sbjct: 1246 PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL--FRIVELEKGRIMIDDCDVAKF 1303
Query: 95 NLSQFRKLSCYIMQDNQLHA-----NLTVEEAMNVATALKLGKDLTKAARKDVVR 144
L+ R++ I Q L + N+ N A L + L +A KDV+
Sbjct: 1304 GLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDA---DLWEALERAHIKDVID 1355
Score = 27.6 bits (61), Expect = 8.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
K L ++ + G L AI+G +G GK++L++ + G
Sbjct: 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLG 665
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 261
Score = 29.6 bits (66), Expect = 1.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNIL 75
+R E+T +GPSG GKST+L L
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSL 54
Score = 29.6 bits (66), Expect = 1.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNIL 217
+R E+T +GPSG GKST+L L
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSL 54
>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA.
This EngA1 subfamily CD represents the first GTPase
domain of EngA and its orthologs, which are composed of
two adjacent GTPase domains. Since the sequences of the
two domains are more similar to each other than to
other GTPases, it is likely that an ancient gene
duplication, rather than a fusion of evolutionarily
distinct GTPases, gave rise to this family. Although
the exact function of these proteins has not been
elucidated, studies have revealed that the E. coli EngA
homolog, Der, and Neisseria gonorrhoeae EngA are
essential for cell viability. A recent report suggests
that E. coli Der functions in ribosome assembly and
stability.
Length = 157
Score = 29.3 bits (67), Expect = 1.1
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 59 AIMGPSGAGKSTLLNILTGYK------TSGT-----EGSITINGHE 93
AI+G GKSTL N LTG + T G G G E
Sbjct: 1 AIVGRPNVGKSTLFNRLTGRRDAIVSDTPGVTRDRKYGEAEWGGRE 46
Score = 27.4 bits (62), Expect = 4.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
AI+G GKSTL N LTG +
Sbjct: 1 AIVGRPNVGKSTLFNRLTGRRD 22
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 30.0 bits (67), Expect = 1.1
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLAL 238
L G + A++GP+GAGK+T + L Q + +++ +D+AL
Sbjct: 347 LERGGVIALVGPTGAGKTTTIAKLA------QRFAAQHAPRDVAL 385
>gnl|CDD|112137 pfam03308, ArgK, ArgK protein. The ArgK protein acts as an
ATPase enzyme and as a kinase, and phosphorylates
periplasmic binding proteins involved in the LAO
(lysine, arginine, ornithine)/AO transport systems.
Length = 267
Score = 29.6 bits (67), Expect = 1.1
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 36 NCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 76
+ P + +L+ + I G GAGKSTL+ L
Sbjct: 10 SRRPEARELLRRLMPLTGRAHRVGITGVPGAGKSTLIEALG 50
Score = 27.3 bits (61), Expect = 7.9
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
+ +L+ + I G GAGKSTL+ L
Sbjct: 16 RELLRRLMPLTGRAHRVGITGVPGAGKSTLIEALG 50
>gnl|CDD|237039 PRK12288, PRK12288, GTPase RsgA; Reviewed.
Length = 347
Score = 29.8 bits (68), Expect = 1.2
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 174 ALAMYNRIHEKTILKSVSGRLRSG--ELTAIM--------GPSGAGKSTLLNIL 217
L +Y I + ++ VS G EL A + G SG GKS+L+N L
Sbjct: 174 QLDIYRNIGYRVLM--VSSHTGEGLEELEAALTGRISIFVGQSGVGKSSLINAL 225
>gnl|CDD|219312 pfam07150, DUF1390, Protein of unknown function (DUF1390). This
family consists of several Paramecium bursaria
chlorella virus 1 (PBCV-1) proteins of around 250
residues in length. The function of this family is
unknown.
Length = 229
Score = 29.7 bits (67), Expect = 1.2
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 3 SQEYVNTNNTNNTNNT--NNTNNTNNTNTNTNTNNNCEPNEKTILKSV 48
E + T +N NN NN N T N N +K+ ++ +
Sbjct: 48 RDEKLATTVSNINTGVVNNNVNNINKTINTKNITINLTVPDKSTVEDI 95
Score = 28.1 bits (63), Expect = 3.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 1 MNSQEYVNTNNTNNTNNTNNTNNTNNTNT 29
N V NN NN N T NT N T
Sbjct: 57 SNINTGVVNNNVNNINKTINTKNITINLT 85
>gnl|CDD|237393 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 29.8 bits (68), Expect = 1.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 59 AIMGPSGAGKST 70
AI GP+GAGKST
Sbjct: 288 AIDGPAGAGKST 299
Score = 29.8 bits (68), Expect = 1.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 201 AIMGPSGAGKST 212
AI GP+GAGKST
Sbjct: 288 AIDGPAGAGKST 299
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 29.6 bits (66), Expect = 1.2
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN-------GHERNLS 97
L +++ R+ +G+LT I+G G GKS+LL + G + EG + + E S
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILG-EMQTLEGKVHWSNKNESEPSFEATRS 75
Query: 98 QFRKLSCYIMQDNQLHANLTVEE 120
+ R Y Q L N TVEE
Sbjct: 76 RNRYSVAYAAQKPWL-LNATVEE 97
Score = 29.2 bits (65), Expect = 1.4
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L +++ R+ +G+LT I+G G GKS+LL + G
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILG 49
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 29.6 bits (67), Expect = 1.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 180 RIHEK--TILKSVSGRLRSGE--LTAIMGPSGAGKSTLLNILT 218
I E T ++++ G L G+ I SG GKSTLL ++
Sbjct: 48 PIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGVGKSTLLGMIA 90
Score = 28.4 bits (64), Expect = 3.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 60 IMGPSGAGKSTLLNILTGYKTS 81
I SG GKSTLL ++ T+
Sbjct: 74 IFAGSGVGKSTLLGMIARGTTA 95
>gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction
only].
Length = 365
Score = 29.9 bits (68), Expect = 1.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 53 RSGELTAIM-GPSGAGKSTLLNILTGYK 79
+SG+ T + G GKSTLLN LT K
Sbjct: 60 KSGDATVALVGFPSVGKSTLLNKLTNTK 87
Score = 29.9 bits (68), Expect = 1.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 195 RSGELTAIM-GPSGAGKSTLLNILTGYK 221
+SG+ T + G GKSTLLN LT K
Sbjct: 60 KSGDATVALVGFPSVGKSTLLNKLTNTK 87
>gnl|CDD|234003 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA.
This protein contains domains distinctive of a single
strand exonuclease (N-terminus, MobA/MobL, pfam03389) as
well as a helicase domain (central region, homologous to
the corresponding region of the F-type relaxase TraI,
TIGR02760). This protein likely fills the same role as
TraI(F), nicking (at the oriT site) and unwinding the
coiled plasmid prior to conjugative transfer.
Length = 744
Score = 30.2 bits (68), Expect = 1.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLE 230
SG++ ++G +G GKST+L K R+ W
Sbjct: 365 TGSGDIAVVVGRAGTGKSTML------KAAREAWEAA 395
Score = 27.8 bits (62), Expect = 5.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 52 LRSGELTAIMGPSGAGKSTLL 72
SG++ ++G +G GKST+L
Sbjct: 365 TGSGDIAVVVGRAGTGKSTML 385
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is
a multistep ATP-dependent reaction that requires the
UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are
ATPases, with UvrA having two ATP binding sites, which
have the characteristic signature of the family of ABC
proteins, and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 29.2 bits (66), Expect = 1.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG 82
L+++ + L + G SG+GKSTL+N G SG
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN--EGLYASG 46
Score = 28.8 bits (65), Expect = 1.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
L+++ + L + G SG+GKSTL+N
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN 39
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit
that fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 29.5 bits (66), Expect = 1.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTL 71
E N K +LK V ++ G+ I G +G+GKS+L
Sbjct: 30 ENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSL 63
Score = 28.0 bits (62), Expect = 4.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTL 213
K +LK V ++ G+ I G +G+GKS+L
Sbjct: 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSL 63
>gnl|CDD|215920 pfam00437, T2SE, Type II/IV secretion system protein. This family
contains both type II and type IV pathway secretion
proteins from bacteria. VirB11 ATPase is a subunit of
the Agrobacterium tumefaciens transfer DNA (T-DNA)
transfer system, a type IV secretion pathway required
for delivery of T-DNA and effector proteins to plant
cells during infection.
Length = 273
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSGTEGSITI 89
+ G +G+GK+TLL L + E +TI
Sbjct: 134 VSGGTGSGKTTLLYALLNEINTDDERIVTI 163
Score = 27.6 bits (62), Expect = 5.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 202 IMGPSGAGKSTLLNILTGY 220
+ G +G+GK+TLL L
Sbjct: 134 VSGGTGSGKTTLLYALLNE 152
>gnl|CDD|225913 COG3378, COG3378, Phage associated DNA primase [General function
prediction only].
Length = 517
Score = 29.7 bits (67), Expect = 1.4
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITI----NGHERNLS 97
I S++GR+ +L + GP G GKST +++++ + + T +T + H L+
Sbjct: 219 IGASLTGRVSEQKLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLEADDRHPFGLA 278
Query: 98 QFRKLSCYIMQDNQ 111
+ + +
Sbjct: 279 ALVGKRLVTVSETE 292
>gnl|CDD|218112 pfam04497, Pox_E2-like, Poxviridae protein. This family of
proteins is restricted to Poxviridae. It contains a
number of differently named uncharacterized proteins.
Length = 727
Score = 29.7 bits (67), Expect = 1.4
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR 157
LT E + +KL K D + +L Y T + R
Sbjct: 422 EYPLTSESTTRLLRLMKLNKGAIAFDPTDRISSLIYLLCTRNELR 466
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 29.8 bits (68), Expect = 1.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 60 IMGPSGAGKSTLLNILTGY 78
I SG GKSTLL ++ Y
Sbjct: 142 IFAGSGVGKSTLLGMMARY 160
Score = 29.8 bits (68), Expect = 1.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 202 IMGPSGAGKSTLLNILTGY 220
I SG GKSTLL ++ Y
Sbjct: 142 IFAGSGVGKSTLLGMMARY 160
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 28.9 bits (65), Expect = 1.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 59 AIMGPSGAGKSTLLNILTGY 78
AI+G SG+GKSTL L+ +
Sbjct: 4 AIIGYSGSGKSTLARKLSQH 23
Score = 28.9 bits (65), Expect = 1.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 201 AIMGPSGAGKSTLLNILTGY 220
AI+G SG+GKSTL L+ +
Sbjct: 4 AIIGYSGSGKSTLARKLSQH 23
>gnl|CDD|217566 pfam03450, CO_deh_flav_C, CO dehydrogenase flavoprotein C-terminal
domain.
Length = 103
Score = 28.2 bits (64), Expect = 1.5
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 117 TVEEAMN-VATALKLGKDL--TKAARKDVVRTLFYR 149
T+E A +A L D+ + R+ + R L R
Sbjct: 63 TLEAAAAALAEDLTPLSDVRGSAEYRRHLARVLLRR 98
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the
MutS family also possess a conserved ATPase activity
that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified
in most prokaryotic and all eukaryotic organisms
examined. Prokaryotes have two homologs (MutS1 and
MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
been identified in eukaryotes. The homodimer MutS1 and
heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
involved in mitotic mismatch repair, whereas MSH4-MSH5
is involved in resolution of Holliday junctions during
meiosis. All members of the MutS family contain the
highly conserved Walker A/B ATPase domain, and many
share a common mechanism of action. MutS1, MSH2-MSH3,
MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
clamps, and recognition of specific DNA structures or
lesions results in ADP/ATP exchange.
Length = 202
Score = 29.1 bits (66), Expect = 1.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 52 LRSGELTAIMGPSGAGKSTLL 72
L SG L I GP+ GKST L
Sbjct: 26 LGSGRLLLITGPNMGGKSTYL 46
Score = 29.1 bits (66), Expect = 1.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 194 LRSGELTAIMGPSGAGKSTLL 214
L SG L I GP+ GKST L
Sbjct: 26 LGSGRLLLITGPNMGGKSTYL 46
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain only
a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 28.8 bits (65), Expect = 1.5
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 199 LTAIMGPSGAGKSTLLNIL---TGYKILRQ 225
L ++G G+GKST L G +L
Sbjct: 1 LILMVGLPGSGKSTFARRLLRELGAVVLSS 30
Score = 27.3 bits (61), Expect = 5.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 57 LTAIMGPSGAGKSTL 71
L ++G G+GKST
Sbjct: 1 LILMVGLPGSGKSTF 15
>gnl|CDD|226415 COG3899, COG3899, Predicted ATPase [General function prediction
only].
Length = 849
Score = 29.7 bits (67), Expect = 1.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 177 MYNRIHE-KTILKS----VSGRLRSGELTAIMGPSGAGKSTLLN 215
+Y R E +L + GR GE+ + G SG GKS L+N
Sbjct: 2 LYGRETELAQLLAAFDRVSKGR---GEVVLVAGESGIGKSALVN 42
>gnl|CDD|224410 COG1493, HprK, Serine kinase of the HPr protein, regulates
carbohydrate metabolism [Signal transduction
mechanisms].
Length = 308
Score = 29.5 bits (67), Expect = 1.6
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 60 IMGPSGAGKSTL 71
I GPSGAGKS L
Sbjct: 150 ITGPSGAGKSEL 161
Score = 29.5 bits (67), Expect = 1.6
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 202 IMGPSGAGKSTL 213
I GPSGAGKS L
Sbjct: 150 ITGPSGAGKSEL 161
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 28.9 bits (65), Expect = 1.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 57 LTAIMGPSGAGKSTLLN---ILTGYKTSGTEGSIT 88
+T I G +G+GKSTLL G+ +G +
Sbjct: 39 ITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFK 73
>gnl|CDD|222258 pfam13604, AAA_30, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. There is a Walker A and
Walker B.
Length = 195
Score = 29.1 bits (66), Expect = 1.8
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 199 LTAIMGPSGAGKSTLLNILTGYKILRQLW 227
+ + GP+G GK+T L K R+ W
Sbjct: 20 VAVVQGPAGTGKTTSL------KAAREAW 42
Score = 27.1 bits (61), Expect = 6.8
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 57 LTAIMGPSGAGKSTLLNILT-GYKTSG 82
+ + GP+G GK+T L ++ +G
Sbjct: 20 VAVVQGPAGTGKTTSLKAAREAWEAAG 46
>gnl|CDD|216584 pfam01580, FtsK_SpoIIIE, FtsK/SpoIIIE family. FtsK has extensive
sequence similarity to wide variety of proteins from
prokaryotes and plasmids, termed the FtsK/SpoIIIE
family. This domain contains a putative ATP binding
P-loop motif. It is found in the FtsK cell division
protein from E. coli and the stage III sporulation
protein E SpoIIIE, which has roles in regulation of
prespore specific gene expression in B. subtilis. A
mutation in FtsK causes a temperature sensitive block in
cell division and it is involved in peptidoglycan
synthesis or modification. The SpoIIIE protein is
implicated in intercellular chromosomal DNA transfer.
Length = 201
Score = 28.9 bits (65), Expect = 1.8
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 190 VSGRLRSGELTAIMGPSGAGKST-----LLNILTGYKILR-QLWLLEYSHKDLA 237
V L I G +G+GKST +L++ + +L+L++ +LA
Sbjct: 31 VVADLVKMPHLLIAGATGSGKSTFLNTLILSLAARHSPEEVRLYLIDPKGGELA 84
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 29.3 bits (65), Expect = 1.8
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
K +L ++ ++ ++TA +GPSG GKST L L
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNL 128
Score = 29.3 bits (65), Expect = 1.8
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
K +L ++ ++ ++TA +GPSG GKST L L
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNL 128
>gnl|CDD|237525 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
Length = 818
Score = 29.4 bits (66), Expect = 1.8
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 58 TAIMGPSGAGKSTLLNIL 75
T I GP+G+GKSTLL ++
Sbjct: 459 TLIFGPTGSGKSTLLALI 476
Score = 29.4 bits (66), Expect = 1.8
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 200 TAIMGPSGAGKSTLLNIL 217
T I GP+G+GKSTLL ++
Sbjct: 459 TLIFGPTGSGKSTLLALI 476
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 29.2 bits (65), Expect = 1.8
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI 87
P E L + S + ++T ++G +G+GKST++ + G S T +I
Sbjct: 21 PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTI 69
>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins,
mitofusins, and guanylate-binding proteins. The dynamin
family of large mechanochemical GTPases includes the
classical dynamins and dynamin-like proteins (DLPs) that
are found throughout the Eukarya. This family also
includes bacterial DLPs. These proteins catalyze
membrane fission during clathrin-mediated endocytosis.
Dynamin consists of five domains; an N-terminal G domain
that binds and hydrolyzes GTP, a middle domain (MD)
involved in self-assembly and oligomerization, a
pleckstrin homology (PH) domain responsible for
interactions with the plasma membrane, GED, which is
also involved in self-assembly, and a proline arginine
rich domain (PRD) that interacts with SH3 domains on
accessory proteins. To date, three vertebrate dynamin
genes have been identified; dynamin 1, which is brain
specific, mediates uptake of synaptic vesicles in
presynaptic terminals; dynamin-2 is expressed
ubiquitously and similarly participates in membrane
fission; mutations in the MD, PH and GED domains of
dynamin 2 have been linked to human diseases such as
Charcot-Marie-Tooth peripheral neuropathy and rare forms
of centronuclear myopathy. Dynamin 3 participates in
megakaryocyte progenitor amplification, and is also
involved in cytoplasmic enlargement and the formation of
the demarcation membrane system. This family also
includes mitofusins (MFN1 and MFN2 in mammals) that are
involved in mitochondrial fusion. Dynamin oligomerizes
into helical structures around the neck of budding
vesicles in a GTP hydrolysis-dependent manner.
Length = 180
Score = 28.7 bits (65), Expect = 2.2
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
A++G AGKSTLLN L G ++L
Sbjct: 4 AVVGEFSAGKSTLLNALLGEEVL 26
>gnl|CDD|227254 COG4917, EutP, Ethanolamine utilization protein [Amino acid
transport and metabolism].
Length = 148
Score = 28.3 bits (63), Expect = 2.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
A +G G GK+TL L G L
Sbjct: 5 AFVGQVGCGKTTLFQSLYGNDTL 27
Score = 27.5 bits (61), Expect = 4.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 59 AIMGPSGAGKSTLLNILTGYKT 80
A +G G GK+TL L G T
Sbjct: 5 AFVGQVGCGKTTLFQSLYGNDT 26
>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes
the phosphorylation of adenosine 5'-phosphosulfate to
form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The
end-product PAPS is a biologically "activated" sulfate
form important for the assimilation of inorganic
sulfate.
Length = 149
Score = 28.2 bits (64), Expect = 2.2
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 204 GPSGAGKSTLLNILTGYKILRQ 225
G SG+GKST+ L + L Q
Sbjct: 6 GLSGSGKSTIARAL--EEKLFQ 25
Score = 27.1 bits (61), Expect = 5.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 62 GPSGAGKSTLLNIL 75
G SG+GKST+ L
Sbjct: 6 GLSGSGKSTIARAL 19
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). This protein,
adenylylsulfate kinase, is often found as a fusion
protein with sulfate adenylyltransferase. Important
residue (active site in E.coli) is residue 100 of the
seed alignment [Central intermediary metabolism, Sulfur
metabolism].
Length = 184
Score = 28.6 bits (64), Expect = 2.2
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 202 IMGPSGAGKSTLLNILTGYKILRQL 226
+ G SG+GKST+ N L K L
Sbjct: 23 LTGLSGSGKSTIANAL--EKKLESK 45
Score = 26.7 bits (59), Expect = 8.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 60 IMGPSGAGKSTLLNIL 75
+ G SG+GKST+ N L
Sbjct: 23 LTGLSGSGKSTIANAL 38
>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles
in homologous recombination, DNA repair, and the
induction of the SOS response. RecA couples ATP
hydrolysis to DNA strand exchange. While prokaryotes
have a single RecA protein, eukaryotes have multiple
RecA homologs such as Rad51, DMC1 and Rad55/57.
Archaea have the RecA-like homologs radA and radB.
Length = 226
Score = 28.7 bits (65), Expect = 2.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 50 GRLRSGELTAIMGPSGAGKSTL 71
G + +G +T I G G+GK+ L
Sbjct: 14 GGIPTGRITEIFGEFGSGKTQL 35
Score = 28.7 bits (65), Expect = 2.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 192 GRLRSGELTAIMGPSGAGKSTL 213
G + +G +T I G G+GK+ L
Sbjct: 14 GGIPTGRITEIFGEFGSGKTQL 35
>gnl|CDD|226126 COG3598, RepA, RecA-family ATPase [DNA replication, recombination,
and repair].
Length = 402
Score = 29.1 bits (65), Expect = 2.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 48 VSGRLRSGELTAIMGPSGAGKSTLL 72
+ R G ++ + G SG GK+TLL
Sbjct: 82 IDEFFRKGYVSILYGDSGVGKTTLL 106
Score = 29.1 bits (65), Expect = 2.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 190 VSGRLRSGELTAIMGPSGAGKSTLL 214
+ R G ++ + G SG GK+TLL
Sbjct: 82 IDEFFRKGYVSILYGDSGVGKTTLL 106
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 274
Score = 28.8 bits (64), Expect = 2.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 56 ELTAIMGPSGAGKSTLL 72
++ A +GPSG GKSTLL
Sbjct: 47 KIIAFIGPSGCGKSTLL 63
Score = 28.8 bits (64), Expect = 2.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 198 ELTAIMGPSGAGKSTLL 214
++ A +GPSG GKSTLL
Sbjct: 47 KIIAFIGPSGCGKSTLL 63
>gnl|CDD|214408 MTH00036, ATP8, ATP synthase F0 subunit 8; Validated.
Length = 54
Score = 26.6 bits (59), Expect = 2.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 6 YVNTNNTNNTNNTNNTNNTNNTNTNT 31
Y+ NN +TN +N+++NT+++N N
Sbjct: 26 YLLLNNWPSTNASNSSSNTSSSNNNN 51
Score = 26.2 bits (58), Expect = 3.3
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 13 NNTNNTNNTNNTNNTNTNTNTN 34
NN +TN +N+++NT+++ N N
Sbjct: 30 NNWPSTNASNSSSNTSSSNNNN 51
Score = 25.0 bits (55), Expect = 9.5
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 16 NNTNNTNNTNNTNTNTNTNNN 36
NN +TN +N+++ +++NNN
Sbjct: 30 NNWPSTNASNSSSNTSSSNNN 50
>gnl|CDD|217429 pfam03215, Rad17, Rad17 cell cycle checkpoint protein.
Length = 490
Score = 28.9 bits (64), Expect = 2.4
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 181 IHEKTI------LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT---GYKI 222
IH+K I LK+V + + GPSG GKST + +L+ G +I
Sbjct: 23 IHKKKIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEI 73
Score = 28.1 bits (62), Expect = 5.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
LK+V + + GPSG GKST + +L
Sbjct: 32 DHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVL 65
>gnl|CDD|227341 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 29.0 bits (65), Expect = 2.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 57 LTAIMGPSGAGKSTLLNILTGYKTSGTEGSI 87
L I+G +G+GKST + + GY+ + G I
Sbjct: 129 LVIIVGATGSGKSTTMAAMIGYRNKNSTGHI 159
Score = 27.4 bits (61), Expect = 8.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 199 LTAIMGPSGAGKSTLLNILTGYK 221
L I+G +G+GKST + + GY+
Sbjct: 129 LVIIVGATGSGKSTTMAAMIGYR 151
>gnl|CDD|112562 pfam03753, HHV6-IE, Human herpesvirus 6 immediate early protein.
The proteins in this family are poorly characterized,
but an investigation has indicated that the immediate
early protein is required the down-regulation of MHC
class I expression in dendritic cells. Human herpesvirus
6 immediate early protein is also referred to as U90.
Length = 993
Score = 29.3 bits (65), Expect = 2.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 2 NSQEYVNTNNTNNTNNTNNTNNTNNTNTNTN-TNNNCEPNEKT 43
N+ E + ++ N TNN + NNTN NT + + P E T
Sbjct: 598 NNDEIDYIASVDSGNRTNNI-HMNNTNENTPFSKSGKSPPEVT 639
>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic
SMC1 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five
recognizable domains. Amino-acid sequence homology of
SMC proteins between species is largely confined to the
amino- and carboxy-terminal globular domains. The
amino-terminal domain contains a 'Walker A'
nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B'
motif, and a motif with homology to the signature
sequence of the ATP-binding cassette (ABC) family of
ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 247
Score = 28.7 bits (65), Expect = 2.5
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 46 KSVSGRLRSGEL---TAIMGPSGAGKSTLLNILT---GYKTS 81
KS GR G T I+GP+G+GKS L++ ++ G K+S
Sbjct: 10 KSYKGRHVIGPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSS 51
Score = 28.7 bits (65), Expect = 2.7
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 188 KSVSGRLRSGEL---TAIMGPSGAGKSTLL 214
KS GR G T I+GP+G+GKS L+
Sbjct: 10 KSYKGRHVIGPFDRFTCIIGPNGSGKSNLM 39
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 29.1 bits (66), Expect = 2.5
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 57 LTAIMGPSGAGKSTL---LNILTGYKTS 81
LT + G +GAGKS + L +L G +
Sbjct: 24 LTVLTGETGAGKSIIIDALGLLLGGRAD 51
Score = 27.2 bits (61), Expect = 9.1
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 199 LTAIMGPSGAGKSTL---LNILTGYK 221
LT + G +GAGKS + L +L G +
Sbjct: 24 LTVLTGETGAGKSIIIDALGLLLGGR 49
>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase. Function:
phosphorylation of DTMP to form DTDP in both de novo and
salvage pathways of DTTP synthesis. Catalytic activity:
ATP + thymidine 5'-phosphate = ADP + thymidine
5'-diphosphate [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 195
Score = 28.5 bits (64), Expect = 2.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 196 SGELTAIMGPSGAGKSTLLNILTGYKILRQL 226
G I G GAGK+T N+L K+L++
Sbjct: 2 RGMFIVIEGIDGAGKTTQANLL--KKLLQEN 30
Score = 26.6 bits (59), Expect = 9.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 54 SGELTAIMGPSGAGKSTLLNIL 75
G I G GAGK+T N+L
Sbjct: 2 RGMFIVIEGIDGAGKTTQANLL 23
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 217
Score = 28.5 bits (64), Expect = 2.5
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 201 AIMGPSGAGKSTLLNILT---GYKIL 223
AI GPSGAGKST+ + GY L
Sbjct: 6 AIDGPSGAGKSTVAKAVAEKLGYAYL 31
Score = 28.2 bits (63), Expect = 3.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 59 AIMGPSGAGKSTLLNIL 75
AI GPSGAGKST+ +
Sbjct: 6 AIDGPSGAGKSTVAKAV 22
>gnl|CDD|227832 COG5545, COG5545, Predicted P-loop ATPase and inactivated
derivatives [General function prediction only].
Length = 517
Score = 28.8 bits (64), Expect = 2.7
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 20/76 (26%)
Query: 180 RIHEKTILKSVSGRLRSG----ELTAIMGPSGAGKSTLLNILTG---------------- 219
+ + ++ +V+ L G + + GP G+ KST L+ L G
Sbjct: 181 QASKCFMVGAVARVLWPGAKVDFMLVLEGPQGSHKSTFLSELFGTYWFTDTAESPTGKDF 240
Query: 220 YKILRQLWLLEYSHKD 235
Y++++ W++E D
Sbjct: 241 YQVIQGCWIVEIGEMD 256
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
transduction [Signal transduction mechanisms].
Length = 260
Score = 28.6 bits (64), Expect = 2.7
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 50 GRLRSGELTAIMGPSGAGKSTL-LNILTGYKTSGT 83
G L G + I GP G GK+ L L G
Sbjct: 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGE 52
>gnl|CDD|218791 pfam05879, RHD3, Root hair defective 3 GTP-binding protein
(RHD3). This family consists of several eukaryotic
root hair defective 3 like GTP-binding proteins. It has
been speculated that the RHD3 protein is a member of a
novel class of GTP-binding proteins that is widespread
in eukaryotes and required for regulated cell
enlargement. The family also contains the homologous
yeast synthetic enhancement of YOP1 (SEY1) protein
which is involved in membrane trafficking.
Length = 743
Score = 28.9 bits (65), Expect = 2.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 61 MGPSGAGKSTLLNILTG 77
G GKSTLLN L G
Sbjct: 1 FGSQSTGKSTLLNHLFG 17
Score = 28.9 bits (65), Expect = 2.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 203 MGPSGAGKSTLLNILTG 219
G GKSTLLN L G
Sbjct: 1 FGSQSTGKSTLLNHLFG 17
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 28.8 bits (65), Expect = 2.7
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 60 IM--GPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQLHANL 116
IM G SG GK+T +N L G I + + + + +D H NL
Sbjct: 26 IMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGF-HLNL 84
Query: 117 TV 118
TV
Sbjct: 85 TV 86
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 28.8 bits (65), Expect = 2.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 57 LTAIMGPSGAGKSTLLNILT 76
L + G SG GK+T L L
Sbjct: 10 LLGVAGDSGCGKTTFLRGLA 29
Score = 28.8 bits (65), Expect = 2.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 199 LTAIMGPSGAGKSTLLNILT 218
L + G SG GK+T L L
Sbjct: 10 LLGVAGDSGCGKTTFLRGLA 29
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 28.9 bits (65), Expect = 2.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
Query: 199 LTAIMGPSGAGKSTLLNIL------TGYKILR 224
TAI+GP+G+GKS +++ + K LR
Sbjct: 26 FTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLR 57
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 254
Score = 28.5 bits (63), Expect = 3.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
L +++ ++ +TA++GPSG GKST L L
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTL 53
Score = 28.5 bits (63), Expect = 3.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
L +++ ++ +TA++GPSG GKST L L
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTL 53
>gnl|CDD|176458 cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA
polymerases are a specialized subset of polymerases that
facilitate translesion synthesis (TLS), a process that
allows the bypass of a variety of DNA lesions. Unlike
replicative polymerases, TLS polymerases lack
proofreading activity and have low fidelity and low
processivity. They use damaged DNA as templates and
insert nucleotides opposite the lesions. The active
sites of TLS polymerases are large and flexible to allow
the accomodation of distorted bases. Expression of
Y-family polymerases is often induced by DNA damage and
is believed to be highly regulated. TLS is likely
induced by the monoubiquitination of the replication
clamp PCNA, which provides a scaffold for TLS
polymerases to bind in order to access the lesion.
Because of their high error rates, TLS polymerases are
potential targets for cancer treatment and prevention.
Length = 335
Score = 28.5 bits (64), Expect = 3.0
Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 13/64 (20%)
Query: 106 IMQDNQLHANLTVEEAMNVATALKLGKDLT-----KAARKDVVRTLFYRSDTNHAQRCFL 160
I+ N V M +A AL L +L A ++ L A
Sbjct: 36 ILACNAAARAAGVRPGMPLAEALALCPNLQVVEYDPEADARALQEL--------ALWLLR 87
Query: 161 SGPW 164
P
Sbjct: 88 FTPL 91
>gnl|CDD|239386 cd03112, CobW_like, The function of this protein family is unkown.
The amino acid sequence of YjiA protein in E. coli
contains several conserved motifs that characterizes it
as a P-loop GTPase. YijA gene is among the genes
significantly induced in response to DNA-damage caused
by mitomycin. YijA gene is a homologue of the CobW gene
which encodes the cobalamin synthesis protein/P47K.
Length = 158
Score = 28.0 bits (63), Expect = 3.1
Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Query: 200 TAIMGPSGAGKSTLLN-ILT---GYKI 222
T + G GAGK+TLLN ILT G KI
Sbjct: 3 TVLTGFLGAGKTTLLNHILTEQHGRKI 29
>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion
transport and metabolism].
Length = 653
Score = 28.8 bits (65), Expect = 3.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 59 AIMGPSGAGKSTLLNILTG 77
A++G GK+TL N LTG
Sbjct: 7 ALVGNPNVGKTTLFNALTG 25
Score = 28.8 bits (65), Expect = 3.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 201 AIMGPSGAGKSTLLNILTG 219
A++G GK+TL N LTG
Sbjct: 7 ALVGNPNVGKTTLFNALTG 25
>gnl|CDD|239390 cd03116, MobB, Molybdenum is an essential trace element in the form
of molybdenum cofactor (Moco) which is associated with
the metabolism of nitrogen, carbon and sulfur by redox
active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe and
mog. The mob locus contains mobA and mobB genes. MobB
catalyzes the attachment of the guanine dinucleotide to
molybdopterin.
Length = 159
Score = 28.0 bits (63), Expect = 3.2
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQL 226
+G SG+GK+TLL K++ L
Sbjct: 5 GFVGYSGSGKTTLLE-----KLIPAL 25
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 55 GELTAIMGPSGAGKSTLLNIL 75
E T I+GP+G+GK+T+L+ +
Sbjct: 24 SETTIIVGPNGSGKTTVLDAI 44
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 197 GELTAIMGPSGAGKSTLLNIL 217
E T I+GP+G+GK+T+L+ +
Sbjct: 24 SETTIIVGPNGSGKTTVLDAI 44
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 28.0 bits (63), Expect = 3.2
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQ 225
I G GAGK+T +L + L +
Sbjct: 7 VIEGIDGAGKTTQAELL--KERLEE 29
Score = 27.6 bits (62), Expect = 5.0
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 59 AIMGPSGAGKSTLLNILTGY 78
I G GAGK+T +L
Sbjct: 7 VIEGIDGAGKTTQAELLKER 26
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family
for which functions are known are part of an
exonuclease complex with sbcD homologs. This complex is
involved in the initiation of recombination to regulate
the levels of palindromic sequences in DNA. This family
is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 1042
Score = 28.8 bits (64), Expect = 3.3
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 51 RLRSGELTAIMGPSGAGKSTLLNILTG--YKTSGTEG--SITINGHER 94
G + I G +GAGK+TLL+ +T Y ++N
Sbjct: 22 FTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRSLNSLYA 69
Score = 28.4 bits (63), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 193 RLRSGELTAIMGPSGAGKSTLLNILT 218
G + I G +GAGK+TLL+ +T
Sbjct: 22 FTALGPIFLICGKTGAGKTTLLDAIT 47
>gnl|CDD|224614 COG1700, COG1700, Uncharacterized conserved protein [Function
unknown].
Length = 503
Score = 28.8 bits (64), Expect = 3.4
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 74 ILTGYKTSGTEGSITINGHERNLSQFRK-LSCYIMQDNQLHANLTVE 119
YK G T GHER + R L Q ++ A+L+ E
Sbjct: 68 NFRSYKGISFLGEETPGGHERIPIEVRSKLIDIHKQYPKMLADLSEE 114
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 28.6 bits (64), Expect = 3.4
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 40 NEKTILKSV---SGRLRSGELTAIMGPSGAGKS 69
+E ++V S ++ GE+ I+G SG+GKS
Sbjct: 15 DESAPFRAVDRISYSVKQGEVVGIVGESGSGKS 47
Score = 27.4 bits (61), Expect = 6.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 183 EKTILKSV---SGRLRSGELTAIMGPSGAGKS 211
E ++V S ++ GE+ I+G SG+GKS
Sbjct: 16 ESAPFRAVDRISYSVKQGEVVGIVGESGSGKS 47
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 27.9 bits (62), Expect = 3.4
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDL 236
+ L+ L + + GP G GK+TL + L + DL
Sbjct: 3 QEEAIEALREAL-ELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58
>gnl|CDD|239388 cd03114, ArgK-like, The function of this protein family is
unkown. The protein sequences are similar to the ArgK
protein in E. coli. ArgK protein is a membrane ATPase
which is required for transporting arginine, ornithine
and lysine into the cells by the arginine and ornithine
(AO system) and lysine, arginine and ornithine (LAO)
transport systems.
Length = 148
Score = 27.7 bits (62), Expect = 3.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 60 IMGPSGAGKSTLLNILTGY 78
I G GAGKSTL++ L
Sbjct: 4 ITGVPGAGKSTLIDALITA 22
Score = 27.7 bits (62), Expect = 3.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 202 IMGPSGAGKSTLLNILTGY 220
I G GAGKSTL++ L
Sbjct: 4 ITGVPGAGKSTLIDALITA 22
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 28.8 bits (64), Expect = 3.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 19 NNTNNTNNTNTNTNTNNNCEPNEKTIL 45
NN +N N +TNN C IL
Sbjct: 304 NNKRENSNNGNNNSTNNVCYAQHSEIL 330
>gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein
(DRG). The developmentally regulated GTP-binding
protein (DRG) subfamily is an uncharacterized member of
the Obg family, an evolutionary branch of GTPase
superfamily proteins. GTPases act as molecular switches
regulating diverse cellular processes. DRG2 and DRG1
comprise the DRG subfamily in eukaryotes. In view of
their widespread expression in various tissues and high
conservation among distantly related species in
eukaryotes and archaea, DRG proteins may regulate
fundamental cellular processes. It is proposed that the
DRG subfamily proteins play their physiological roles
through RNA binding.
Length = 233
Score = 28.3 bits (64), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 59 AIMGPSGAGKSTLLNILTG 77
A++G GKSTLL+ LT
Sbjct: 4 ALVGFPSVGKSTLLSKLTN 22
Score = 28.3 bits (64), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 201 AIMGPSGAGKSTLLNILTG 219
A++G GKSTLL+ LT
Sbjct: 4 ALVGFPSVGKSTLLSKLTN 22
>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation
GTPase HydF. This model describes the family of the
[Fe] hydrogenase maturation protein HypF as
characterized in Chlamydomonas reinhardtii and found,
in an operon with radical SAM proteins HydE and HydG,
in numerous bacteria. It has GTPase activity, can bind
an 4Fe-4S cluster, and is essential for hydrogenase
activity [Protein fate, Protein modification and
repair].
Length = 391
Score = 28.2 bits (64), Expect = 3.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 59 AIMGPSGAGKSTLLNILTG 77
I G AGKS+L+N LTG
Sbjct: 10 GIFGRRNAGKSSLINALTG 28
Score = 28.2 bits (64), Expect = 3.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 201 AIMGPSGAGKSTLLNILTG 219
I G AGKS+L+N LTG
Sbjct: 10 GIFGRRNAGKSSLINALTG 28
>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In
Arabidopsis the region carries two binding domains, a
phosphoribosylpyrophosphate-binding domain and, at the
very C-terminus, a uracil-binding domain.
Length = 197
Score = 28.1 bits (63), Expect = 3.7
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQLWL 228
+ G SGAGK+T+ I + +
Sbjct: 3 GVTGSSGAGKTTVARTFV--SIFGREGV 28
>gnl|CDD|131944 TIGR02898, spore_YhcN_YlaJ, sporulation lipoprotein, YhcN/YlaJ
family. YhcN and YlaJ are predicted lipoproteins that
have been detected as spore proteins but not vegetative
proteins in Bacillus subtilis. Both appear to be
expressed under control of the RNA polymerase sigma-G
factor. The YlaJ-like members of this family have a
low-complexity, strongly acidic 40-residue C-terminal
domain that is not included in the seed alignment for
this model. A portion of the low-complexity region
between the lipoprotein signal sequence and the main
conserved region of the protein family was also excised
from the seed alignment [Cellular processes,
Sporulation and germination].
Length = 158
Score = 27.7 bits (62), Expect = 3.7
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 10 NNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILK 46
N N N + N N + N+ +
Sbjct: 18 AQKKNPPNNNVGETNVMSKNNNGMNTTNDTNDGDLYD 54
>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction
only].
Length = 296
Score = 28.2 bits (63), Expect = 3.7
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 60 IMGPSGAGKSTLLNIL 75
+MG +GAGKS+L+N L
Sbjct: 44 LMGATGAGKSSLINAL 59
Score = 28.2 bits (63), Expect = 3.7
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 202 IMGPSGAGKSTLLNIL 217
+MG +GAGKS+L+N L
Sbjct: 44 LMGATGAGKSSLINAL 59
>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and
related GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 28.1 bits (63), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 60 IMGPSGAGKSTLLNIL 75
I G GAGKSTL+ L
Sbjct: 56 ITGVPGAGKSTLIEAL 71
Score = 28.1 bits (63), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 202 IMGPSGAGKSTLLNIL 217
I G GAGKSTL+ L
Sbjct: 56 ITGVPGAGKSTLIEAL 71
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 27.4 bits (61), Expect = 4.0
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 59 AIMGPSGAGKSTLLNIL 75
++GP +GK+TL+ L
Sbjct: 4 LVVGPKDSGKTTLIRKL 20
Score = 27.4 bits (61), Expect = 4.0
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 201 AIMGPSGAGKSTLLNIL 217
++GP +GK+TL+ L
Sbjct: 4 LVVGPKDSGKTTLIRKL 20
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 28.4 bits (64), Expect = 4.1
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 58 TAIMGPSGAGKSTLLNILT 76
++ SG KS + +
Sbjct: 42 LLVVAESGERKSAVDKLAM 60
Score = 28.4 bits (64), Expect = 4.1
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 200 TAIMGPSGAGKSTLLNILT 218
++ SG KS + +
Sbjct: 42 LLVVAESGERKSAVDKLAM 60
>gnl|CDD|173185 PRK14722, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 374
Score = 28.1 bits (62), Expect = 4.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224
+L S + G + A+MGP+G GK+T L ++R
Sbjct: 126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 164
Score = 27.0 bits (59), Expect = 9.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKST 70
+L S + G + A+MGP+G GK+T
Sbjct: 126 VLDSEDALMERGGVFALMGPTGVGKTT 152
>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyzes the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 27.6 bits (62), Expect = 4.2
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 204 GPSGAGKSTLLNILTGYKILRQL 226
G SG+GKST+ N L + L
Sbjct: 9 GLSGSGKSTIANAL--ERKLFAQ 29
Score = 27.2 bits (61), Expect = 5.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 62 GPSGAGKSTLLNIL 75
G SG+GKST+ N L
Sbjct: 9 GLSGSGKSTIANAL 22
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of
barmotin, a member of the SMC protein family. Barmotin
is a tight junction-associated protein expressed in rat
epithelial cells which is thought to have an important
regulatory role in tight junction barrier function.
Barmotin belongs to the SMC protein family. SMC
proteins are large (approximately 110 to 170 kDa), and
each is arranged into five recognizable domains.
Amino-acid sequence homology of SMC proteins between
species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles
a 'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 197
Score = 27.8 bits (63), Expect = 4.4
Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 3/19 (15%)
Query: 57 LTAIMGPSGAGKSTLLNIL 75
LTAI+GP+G+GKS NI+
Sbjct: 24 LTAIVGPNGSGKS---NII 39
Score = 27.8 bits (63), Expect = 4.4
Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 3/19 (15%)
Query: 199 LTAIMGPSGAGKSTLLNIL 217
LTAI+GP+G+GKS NI+
Sbjct: 24 LTAIVGPNGSGKS---NII 39
>gnl|CDD|225713 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism
[Coenzyme metabolism].
Length = 187
Score = 27.8 bits (62), Expect = 4.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 59 AIMGPSGAGKSTLLNIL 75
AI+G +GKSTL+N L
Sbjct: 12 AILGGESSGKSTLVNKL 28
Score = 27.8 bits (62), Expect = 4.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 201 AIMGPSGAGKSTLLNIL 217
AI+G +GKSTL+N L
Sbjct: 12 AILGGESSGKSTLVNKL 28
>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 28.1 bits (64), Expect = 4.7
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 59 AIMGPSGAGKSTLLNILTGYK------TSGT-----EGSITINGHE 93
AI+G GKSTL N LTG + T G G G E
Sbjct: 5 AIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGRE 50
>gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 28.0 bits (63), Expect = 4.7
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 59 AIMGPSGAGKSTLL 72
I+ AGK+TL
Sbjct: 12 GILAHIDAGKTTLT 25
Score = 28.0 bits (63), Expect = 4.7
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 201 AIMGPSGAGKSTLL 214
I+ AGK+TL
Sbjct: 12 GILAHIDAGKTTLT 25
>gnl|CDD|184375 PRK13891, PRK13891, conjugal transfer protein TrbE; Provisional.
Length = 852
Score = 28.2 bits (63), Expect = 4.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 58 TAIMGPSGAGKSTLLNIL 75
T + GP+GAGKST L I+
Sbjct: 491 TFMFGPTGAGKSTHLGII 508
Score = 28.2 bits (63), Expect = 4.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 200 TAIMGPSGAGKSTLLNIL 217
T + GP+GAGKST L I+
Sbjct: 491 TFMFGPTGAGKSTHLGII 508
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 27.9 bits (62), Expect = 5.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 54 SGELTAIMGPSGAGKSTLLNIL 75
+G+ +A MG SG G LLN L
Sbjct: 62 TGKPSACMGTSGPGSIHLLNGL 83
Score = 27.9 bits (62), Expect = 5.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 196 SGELTAIMGPSGAGKSTLLNIL 217
+G+ +A MG SG G LLN L
Sbjct: 62 TGKPSACMGTSGPGSIHLLNGL 83
>gnl|CDD|220015 pfam08784, RPA_C, Replication protein A C terminal. This domain
corresponds to the C terminal of the single stranded
DNA binding protein RPA (replication protein A). RPA is
involved in many DNA metabolic pathways including DNA
replication, DNA repair, recombination, cell cycle and
DNA damage checkpoints.
Length = 103
Score = 26.5 bits (59), Expect = 5.0
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 11 NTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTIL 45
+ NT + T + + N P + +L
Sbjct: 19 SVANTGSAMGTQGAFSGGDASVANPGLTPLQDQVL 53
>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 27.5 bits (62), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQ 225
I G GAGKST + +L ++L Q
Sbjct: 7 TIEGIDGAGKSTQIELL--KELLEQ 29
Score = 27.1 bits (61), Expect = 6.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 59 AIMGPSGAGKSTLLNIL 75
I G GAGKST + +L
Sbjct: 7 TIEGIDGAGKSTQIELL 23
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 27.3 bits (61), Expect = 5.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 60 IMGPSGAGKSTLLNIL 75
+ GPSG GKS + L
Sbjct: 7 LSGPSGVGKSHIKKAL 22
Score = 27.3 bits (61), Expect = 5.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 202 IMGPSGAGKSTLLNIL 217
+ GPSG GKS + L
Sbjct: 7 LSGPSGVGKSHIKKAL 22
>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional.
Length = 201
Score = 27.6 bits (62), Expect = 5.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 202 IMGPSGAGKSTLLNILTGYKI 222
+G S GKSTL+ LTG K+
Sbjct: 14 FVGRSNVGKSTLVRELTGKKV 34
Score = 27.2 bits (61), Expect = 7.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 60 IMGPSGAGKSTLLNILTGYK 79
+G S GKSTL+ LTG K
Sbjct: 14 FVGRSNVGKSTLVRELTGKK 33
>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability
[Protein synthesis, Other].
Length = 429
Score = 27.8 bits (63), Expect = 5.4
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
Query: 59 AIMGPSGAGKSTLLNILTGYK------TSGT-----EGSITINGHE 93
AI+G GKSTL+N L G + +GT + NG +
Sbjct: 176 AIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKK 221
Score = 27.8 bits (63), Expect = 5.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 201 AIMGPSGAGKSTLLNILTGYK 221
AI+G GKSTL+N L G +
Sbjct: 176 AIIGRPNVGKSTLVNALLGEE 196
Score = 27.0 bits (61), Expect = 9.2
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 59 AIMGPSGAGKSTLLNILTGYK------TSGT-----EGSITINGHE 93
AI+G GKSTL N LTG + T G G G E
Sbjct: 3 AIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE 48
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 28.0 bits (62), Expect = 5.4
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 10 NNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEK 42
N ++N+NN + +++ + + + N P +K
Sbjct: 320 NGSSNSNNDDTSSSNHLGSNRISNRNPSSPYKK 352
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 27.8 bits (62), Expect = 5.8
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 2 NSQEYVNTNNTNNTNNTNNTNNTN--NTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTA 59
N E ++ +T+ +N N +N N + +T ++ + I+ + L +
Sbjct: 47 NDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLPQTNINQ 106
Query: 60 IMGPSGAGKSTLLNIL 75
++ + + L L
Sbjct: 107 LLTKNKYDDNYSLTTL 122
>gnl|CDD|220422 pfam09818, ABC_ATPase, Predicted ATPase of the ABC class. Members
of this family include various bacterial predicted ABC
class ATPases.
Length = 447
Score = 27.6 bits (62), Expect = 6.0
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 39 PNEKTILKSVSGR-LRSGELTAIMGPSGAGKSTLLNIL 75
PN T+ SG + G +T I+G GKSTLL L
Sbjct: 231 PNGGTV----SGMGIPKG-ITLIVGGGYHGKSTLLEAL 263
Score = 27.2 bits (61), Expect = 9.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 199 LTAIMGPSGAGKSTLLNIL 217
+T I+G GKSTLL L
Sbjct: 245 ITLIVGGGYHGKSTLLEAL 263
>gnl|CDD|224260 COG1341, COG1341, Predicted GTPase or GTP-binding protein
[General function prediction only].
Length = 398
Score = 27.7 bits (62), Expect = 6.0
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIM--GPSGAGKSTLLNILT 76
EP E+ S +G++ +M GP +GKSTL L
Sbjct: 54 EPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLA 94
Score = 27.7 bits (62), Expect = 6.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 201 AIMGPSGAGKSTLLNILT 218
++GP +GKSTL L
Sbjct: 77 MVVGPVDSGKSTLTTYLA 94
>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five
subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1.
The Obg-like subfamily consists of five well-delimited,
ancient subfamilies, namely Obg, DRG, YyaF/YchF,
Ygr210, and NOG1. Four of these groups (Obg, DRG,
YyaF/YchF, and Ygr210) are characterized by a distinct
glycine-rich motif immediately following the Walker B
motif (G3 box). Obg/CgtA is an essential gene that is
involved in the initiation of sporulation and DNA
replication in the bacteria Caulobacter and Bacillus,
but its exact molecular role is unknown. Furthermore,
several OBG family members possess a C-terminal
RNA-binding domain, the TGS domain, which is also
present in threonyl-tRNA synthetase and in bacterial
guanosine polyphosphatase SpoT. Nog1 is a nucleolar
protein that might function in ribosome assembly. The
DRG and Nog1 subfamilies are ubiquitous in archaea and
eukaryotes, the Ygr210 subfamily is present in archaea
and fungi, and the Obg and YyaF/YchF subfamilies are
ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and
DRG subfamilies appear to form one major branch of the
Obg family and the Ygr210 and YchF subfamilies form
another branch. No GEFs, GAPs, or GDIs for Obg have
been identified.
Length = 167
Score = 27.0 bits (60), Expect = 6.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 59 AIMGPSGAGKSTLLNILTGYKT 80
++G GKSTLL+ LT K
Sbjct: 1 GLVGLPNVGKSTLLSALTSAKV 22
Score = 27.0 bits (60), Expect = 6.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
++G GKSTLL+ LT K+
Sbjct: 1 GLVGLPNVGKSTLLSALTSAKV 22
>gnl|CDD|238543 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B. This group of
recombinases includes the eukaryotic proteins RAD51,
RAD55/57 and the meiosis-specific protein DMC1, and the
archaeal proteins radA and radB. They are closely
related to the bacterial RecA group. Rad51 proteins
catalyze a similiar recombination reaction as RecA,
using ATP-dependent DNA binding activity and a
DNA-dependent ATPase. However, this reaction is less
efficient and requires accessory proteins such as
RAD55/57 .
Length = 235
Score = 27.5 bits (62), Expect = 6.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 50 GRLRSGELTAIMGPSGAGKSTL 71
G + +G +T I G G+GK+ L
Sbjct: 14 GGIETGSITEIFGEFGSGKTQL 35
Score = 27.5 bits (62), Expect = 6.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 192 GRLRSGELTAIMGPSGAGKSTL 213
G + +G +T I G G+GK+ L
Sbjct: 14 GGIETGSITEIFGEFGSGKTQL 35
>gnl|CDD|223993 COG1066, Sms, Predicted ATP-dependent serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 456
Score = 27.6 bits (62), Expect = 6.2
Identities = 21/88 (23%), Positives = 25/88 (28%), Gaps = 30/88 (34%)
Query: 157 RCFLSGPWGTFESSVLLA----------LAMYNRIHEKTI-LKSVS-------------- 191
+C G W T VL A K + L +
Sbjct: 23 KCPACGAWNTLVEEVLAASPGGAPNKRRSGKAGSEPSKVLKLSDIELEEEPRISTGIEEL 82
Query: 192 -----GRLRSGELTAIMGPSGAGKSTLL 214
G L G + I G G GKSTLL
Sbjct: 83 DRVLGGGLVPGSVILIGGDPGIGKSTLL 110
>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family.
Ferrous iron transport protein B (FeoB) subfamily. E.
coli has an iron(II) transport system, known as feo,
which may make an important contribution to the iron
supply of the cell under anaerobic conditions. FeoB has
been identified as part of this transport system. FeoB
is a large 700-800 amino acid integral membrane
protein. The N terminus contains a P-loop motif
suggesting that iron transport may be ATP dependent.
Length = 159
Score = 27.0 bits (61), Expect = 6.2
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 59 AIMGPSGAGKSTLLNILTGYKT-----SGT-----EGSITINGHE 93
A++G GK+TL N LTG + G EG + G E
Sbjct: 1 ALVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGEFKLGGKE 45
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 27.7 bits (62), Expect = 6.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 58 TAIMGPSGAGKSTLLNILT 76
T I G +GAGKST+L LT
Sbjct: 30 TLITGKNGAGKSTMLEALT 48
Score = 27.7 bits (62), Expect = 6.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 200 TAIMGPSGAGKSTLLNILT 218
T I G +GAGKST+L LT
Sbjct: 30 TLITGKNGAGKSTMLEALT 48
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of
different compounds including sugars, ions, peptides,
and more complex organic molecules. The nucleotide
binding domain shows the highest similarity between all
members of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 276
Score = 27.6 bits (62), Expect = 6.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 57 LTAIMGPSGAGKSTL---LNILTGYKTS 81
LT + G +GAGKS L L++L G + S
Sbjct: 23 LTVLTGETGAGKSILLDALSLLLGGRAS 50
>gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family.
Length = 168
Score = 26.8 bits (60), Expect = 6.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
A++G AGKS++LN L G IL
Sbjct: 2 AVVGDQSAGKSSVLNALLGRDIL 24
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 27.6 bits (61), Expect = 7.3
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 2 NSQEYVNTNNTNNTNNT------NNTNNTNNTNTNTNTNNNCEPNE 41
N + VN N +N+ + N N N N N++ + E +E
Sbjct: 451 NKNKQVNPGNRHNSEDRYTRPHGRNNENRNYNNKNSDIPKHPERSE 496
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing
and segregating chromosomes for partition. SMC proteins
are found in bacteria, archaea, and eukaryotes. This
family represents the SMC protein of most bacteria. The
smc gene is often associated with scpB (TIGR00281) and
scpA genes, where scp stands for segregation and
condensation protein. SMC was shown (in Caulobacter
crescentus) to be induced early in S phase but present
and bound to DNA throughout the cell cycle [Cellular
processes, Cell division, DNA metabolism,
Chromosome-associated proteins].
Length = 1179
Score = 27.7 bits (62), Expect = 7.9
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 55 GELTAIMGPSGAGKSTLLNIL 75
+T I+GP+G GKS NI+
Sbjct: 23 KGITGIVGPNGCGKS---NIV 40
Score = 27.7 bits (62), Expect = 7.9
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 197 GELTAIMGPSGAGKSTLLNIL 217
+T I+GP+G GKS NI+
Sbjct: 23 KGITGIVGPNGCGKS---NIV 40
>gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed.
Length = 668
Score = 27.4 bits (62), Expect = 8.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 61 MGPSGAGKSTLL 72
+G SGAGK+TL
Sbjct: 1 VGHSGAGKTTLT 12
Score = 27.4 bits (62), Expect = 8.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 203 MGPSGAGKSTLL 214
+G SGAGK+TL
Sbjct: 1 VGHSGAGKTTLT 12
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 27.2 bits (61), Expect = 8.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 60 IMGPSGAGKSTLLNILTGY 78
I SG GKSTLL ++
Sbjct: 168 IFAGSGVGKSTLLGMIARN 186
Score = 27.2 bits (61), Expect = 8.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 202 IMGPSGAGKSTLLNILTGY 220
I SG GKSTLL ++
Sbjct: 168 IFAGSGVGKSTLLGMIARN 186
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 26.4 bits (59), Expect = 8.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 61 MGPSGAGKSTLLNILTG 77
+G SG GK+TL L G
Sbjct: 7 IGRSGCGKTTLTQALNG 23
Score = 26.4 bits (59), Expect = 8.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 203 MGPSGAGKSTLLNILTG 219
+G SG GK+TL L G
Sbjct: 7 IGRSGCGKTTLTQALNG 23
>gnl|CDD|225363 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 27.3 bits (61), Expect = 8.0
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 5/23 (21%)
Query: 204 GPSGAGKSTLLNILTGYKILRQL 226
GP+G+GK+T L Y L +L
Sbjct: 265 GPTGSGKTTTL-----YAALSEL 282
>gnl|CDD|234300 TIGR03662, Chlor_Arch_YYY, Chlor_Arch_YYY domain. Members of this
highly hydrophobic probable integral membrane family
belong to two classes. In one, a single copy of the
region modeled by This model represents essentially the
full length of a strongly hydrophobic protein of about
700 to 900 residues (variable because of long inserts in
some). The domain architecture of the other class
consists of an additional N-terminal region, two copies
of the region represented by this model, and three to
four repeats of TPR, or tetratricopeptide repeat. The
unusual species range includes several Archaea, several
Chloroflexi, and Clostridium phytofermentans. An unusual
motif YYYxG is present, and we suggest the name
Chlor_Arch_YYY protein. The function is unknown.
Length = 723
Score = 27.4 bits (61), Expect = 8.1
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 172 LLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224
LLA Y + + + R+R+G A+ + + L G +I
Sbjct: 181 LLATGAYGLGYNLLRTRLLPRRIRAGLTAALFVGLLGNLWLIPSGLLGAQIFN 233
>gnl|CDD|226986 COG4639, COG4639, Predicted kinase [General function prediction
only].
Length = 168
Score = 26.7 bits (59), Expect = 8.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 57 LTAIMGPSGAGKSTL 71
L + G SG+GKST
Sbjct: 4 LVVLRGASGSGKSTF 18
Score = 26.7 bits (59), Expect = 8.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 199 LTAIMGPSGAGKSTL 213
L + G SG+GKST
Sbjct: 4 LVVLRGASGSGKSTF 18
>gnl|CDD|224345 COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport
and metabolism].
Length = 216
Score = 26.9 bits (60), Expect = 8.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 59 AIMGPSGAGKSTLLNIL 75
I G GAGKSTL L
Sbjct: 8 VIEGMIGAGKSTLAQAL 24
Score = 26.9 bits (60), Expect = 8.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 201 AIMGPSGAGKSTLLNIL 217
I G GAGKSTL L
Sbjct: 8 VIEGMIGAGKSTLAQAL 24
>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase.
Length = 468
Score = 27.2 bits (60), Expect = 8.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 55 GELTAIMGPSGAGKSTL 71
++ +MGP+G+GKS L
Sbjct: 22 AKVVVVMGPTGSGKSKL 38
Score = 27.2 bits (60), Expect = 8.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 197 GELTAIMGPSGAGKSTL 213
++ +MGP+G+GKS L
Sbjct: 22 AKVVVVMGPTGSGKSKL 38
>gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases)
[Translation, ribosomal structure and biogenesis].
Length = 697
Score = 27.2 bits (61), Expect = 8.2
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 59 AIMGPSGAGKSTLL-NIL 75
I+ AGK+TL IL
Sbjct: 14 GIVAHIDAGKTTLTERIL 31
Score = 27.2 bits (61), Expect = 8.2
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 201 AIMGPSGAGKSTLL-NIL 217
I+ AGK+TL IL
Sbjct: 14 GIVAHIDAGKTTLTERIL 31
>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA.
This EngA2 subfamily CD represents the second GTPase
domain of EngA and its orthologs, which are composed of
two adjacent GTPase domains. Since the sequences of the
two domains are more similar to each other than to
other GTPases, it is likely that an ancient gene
duplication, rather than a fusion of evolutionarily
distinct GTPases, gave rise to this family. Although
the exact function of these proteins has not been
elucidated, studies have revealed that the E. coli EngA
homolog, Der, and Neisseria gonorrhoeae EngA are
essential for cell viability. A recent report suggests
that E. coli Der functions in ribosome assembly and
stability.
Length = 174
Score = 26.6 bits (60), Expect = 8.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 59 AIMGPSGAGKSTLLNILTG 77
AI+G GKS+LLN L G
Sbjct: 6 AIIGRPNVGKSSLLNALLG 24
Score = 26.6 bits (60), Expect = 8.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 201 AIMGPSGAGKSTLLNILTG 219
AI+G GKS+LLN L G
Sbjct: 6 AIIGRPNVGKSSLLNALLG 24
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the
ATP synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor
Rho.
Length = 213
Score = 27.0 bits (61), Expect = 8.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 59 AIMGPSGAGKSTLL 72
I G SG GK+ LL
Sbjct: 19 GIFGGSGTGKTVLL 32
Score = 27.0 bits (61), Expect = 8.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 201 AIMGPSGAGKSTLL 214
I G SG GK+ LL
Sbjct: 19 GIFGGSGTGKTVLL 32
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance
of chromosomes) proteins bind DNA and act in organizing
and segregating chromosomes for partition. SMC proteins
are found in bacteria, archaea, and eukaryotes. It is
found in a single copy and is homodimeric in
prokaryotes, but six paralogs (excluded from this
family) are found in eukarotes, where SMC proteins are
heterodimeric. This family represents the SMC protein
of archaea and a few bacteria (Aquifex, Synechocystis,
etc); the SMC of other bacteria is described by
TIGR02168. The N- and C-terminal domains of this
protein are well conserved, but the central hinge
region is skewed in composition and highly divergent
[Cellular processes, Cell division, DNA metabolism,
Chromosome-associated proteins].
Length = 1164
Score = 27.3 bits (61), Expect = 8.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 57 LTAIMGPSGAGKSTLLNIL 75
T I GP+G+GKS + + +
Sbjct: 25 FTVISGPNGSGKSNIGDAI 43
Score = 27.3 bits (61), Expect = 8.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 199 LTAIMGPSGAGKSTLLNIL 217
T I GP+G+GKS + + +
Sbjct: 25 FTVISGPNGSGKSNIGDAI 43
>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Validated.
Length = 568
Score = 27.3 bits (61), Expect = 8.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 62 GPSGAGKSTLLNIL 75
G SGAGKST+ L
Sbjct: 399 GLSGAGKSTIAKAL 412
Score = 27.3 bits (61), Expect = 8.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 204 GPSGAGKSTLLNIL 217
G SGAGKST+ L
Sbjct: 399 GLSGAGKSTIAKAL 412
>gnl|CDD|234340 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706
family. Members of this protein family are predicted
ATP-binding proteins apparently associated with DNA
conjugal transfer. Members are found both in plasmids
and in bacterial chromosomal regions that appear to
derive from integrative elements such as conjugative
transposons. More distant homologs, outside the scope of
this family, include type IV secretion/conjugal transfer
proteins such as TraC, VirB4 and TrsE. The granularity
of this protein family definition is chosen so as to
represent one distinctive clade and act as a marker
through which to define and recognize the class of
mobile element it serves [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 893
Score = 27.3 bits (61), Expect = 8.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 60 IMGPSGAGKSTLLNIL 75
I+GP+GAGKS L L
Sbjct: 480 ILGPTGAGKSATLTNL 495
Score = 27.3 bits (61), Expect = 8.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 202 IMGPSGAGKSTLLNIL 217
I+GP+GAGKS L L
Sbjct: 480 ILGPTGAGKSATLTNL 495
>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras
GTPases. RGK subfamily. The RGK (Rem, Rem2, Rad,
Gem/Kir) subfamily of Ras GTPases are expressed in a
tissue-specific manner and are dynamically regulated by
transcriptional and posttranscriptional mechanisms in
response to environmental cues. RGK proteins bind to
the beta subunit of L-type calcium channels, causing
functional down-regulation of these voltage-dependent
calcium channels, and either termination of
calcium-dependent secretion or modulation of electrical
conduction and contractile function. Inhibition of
L-type calcium channels by Rem2 may provide a mechanism
for modulating calcium-triggered exocytosis in
hormone-secreting cells, and has been proposed to
influence the secretion of insulin in pancreatic beta
cells. RGK proteins also interact with and inhibit the
Rho/Rho kinase pathway to modulate remodeling of the
cytoskeleton. Two characteristics of RGK proteins cited
in the literature are N-terminal and C-terminal
extensions beyond the GTPase domain typical of Ras
superfamily members. The N-terminal extension is not
conserved among family members; the C-terminal
extension is reported to be conserved among the family
and lack the CaaX prenylation motif typical of
membrane-associated Ras proteins. However, a putative
CaaX motif has been identified in the alignment of the
C-terminal residues of this CD.
Length = 219
Score = 26.6 bits (59), Expect = 9.6
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 10/48 (20%)
Query: 59 AIMGPSGAGKSTLLNILTG-------YKTSGTEG---SITINGHERNL 96
++G SG GKS+L NI T Y+ SG + +++++G E L
Sbjct: 4 VLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATL 51
>gnl|CDD|233039 TIGR00594, polc, DNA-directed DNA polymerase III (polc). All
proteins in this family for which functions are known
are DNA polymerases. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1022
Score = 27.3 bits (61), Expect = 10.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 121 AMNVATALKLGKDLTKAARKDVVRTL 146
NVA + G KAA +DV R L
Sbjct: 425 HDNVAQIITFGTMKAKAALRDVARVL 450
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.127 0.360
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,079,309
Number of extensions: 984953
Number of successful extensions: 3788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3467
Number of HSP's successfully gapped: 1253
Length of query: 240
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 146
Effective length of database: 6,768,326
Effective search space: 988175596
Effective search space used: 988175596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.9 bits)