RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy310
(240 letters)
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 73.7 bits (182), Expect = 5e-16
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 22/131 (16%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF- 99
E T L +SG +R+GE+ ++GP+GAGKSTLL + G + +GSI G + L +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAG--QPLEAWS 67
Query: 100 -----RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH 154
+ Y+ Q V + L R +++ + +
Sbjct: 68 ATKLALHRA-YLSQQQTPPFATPVWHY--LT----LH--QHDKTRTELLNDVAGALALDD 118
Query: 155 -AQRCF--LSG 162
R LSG
Sbjct: 119 KLGRSTNQLSG 129
Score = 61.0 bits (149), Expect = 2e-11
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK------ILRQLWLLEYSHK 234
+ E T L +SG +R+GE+ ++GP+GAGKSTLL + G L +S
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSAT 69
Query: 235 DLALCR 240
LAL R
Sbjct: 70 KLALHR 75
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 68.3 bits (168), Expect = 3e-14
Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
K +L+ ++ + G + GP+G GK+TLL ++ Y +G I NG +++ +
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY-LKPLKGEIIYNGV--PITKVKG 78
Query: 102 LSCYIMQDNQLHANLTVEEAMNVATALK 129
++ ++ + ++VE+ + +L
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASLY 106
Score = 45.6 bits (109), Expect = 3e-06
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
K +L+ ++ + G + GP+G GK+TLL ++ Y
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 68.1 bits (167), Expect = 7e-14
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
E+ L++++ + GE I+GP+G+GK+TLL ++G G+I ING + +
Sbjct: 15 GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP--YSGNIFING--MEVRK 69
Query: 99 FRKLSCYIMQDNQLHA-NLTVEEAMNVATALKLGK 132
R Y + + +TV + V +L
Sbjct: 70 IRNYIRYSTNLPEAYEIGVTVND--IVYLYEELKG 102
Score = 45.4 bits (108), Expect = 5e-06
Identities = 14/41 (34%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ +E+ L++++ + GE I+GP+G+GK+TLL ++G
Sbjct: 13 GKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG 52
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 68.0 bits (167), Expect = 7e-14
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
P EK L++VS + GE + G +G+GKSTLL I+ G T G + +G + +
Sbjct: 17 PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-TSGDVLYDGERKKGYE 75
Query: 99 FRKLSCYIMQ--DNQLHANLTVEE 120
R+ Q ++Q A V +
Sbjct: 76 IRRNIGIAFQYPEDQFFAE-RVFD 98
Score = 46.0 bits (110), Expect = 3e-06
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
EK L++VS + GE + G +G+GKSTLL I+ G
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG 55
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 66.9 bits (164), Expect = 2e-13
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITINGHER--- 94
KTILK +S ++ G+ + G +GAGK+TLLNIL Y TSGT + + G
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT---VNLFGKMPGKV 88
Query: 95 --NLSQFRKLSCYIMQD--NQLHANLTVEEAMNVATAL 128
+ R+ ++ + V + V +
Sbjct: 89 GYSAETVRQHIGFVSHSLLEKFQEGERVIDV--VISGA 124
Score = 58.4 bits (142), Expect = 2e-10
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
KTILK +S ++ G+ + G +GAGK+TLLNIL Y
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 65.6 bits (161), Expect = 3e-13
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ERNLS 97
ILK +S ++ GE +I+G SG+GKSTLL IL G + TEG + + G E+ LS
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 98 QFRKLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
R ++ Q + L LT E NV + K A++ L
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALE--NVIVPMLKMGKPKKEAKERGEYLL 125
Score = 56.7 bits (138), Expect = 5e-10
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
ILK +S ++ GE +I+G SG+GKSTLL IL
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL 50
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 64.5 bits (158), Expect = 1e-12
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--ERNLS 97
+K ILK +S + GE+ ++GP+GAGK+T L I++ + G +T+ G
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-IKPSSGIVTVFGKNVVEEPH 84
Query: 98 QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
+ RKL Y+ ++ + N+ E + + + +++V
Sbjct: 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEEMVERA 130
Score = 43.7 bits (104), Expect = 2e-05
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+K ILK +S + GE+ ++GP+GAGK+T L I++
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, binding; 1.70A {Thermus
thermophilus} PDB: 2d2f_A*
Length = 250
Score = 62.9 bits (154), Expect = 4e-12
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSITING 91
+ +TILK V+ + GE+ A+MGP+GAGKSTL IL G Y G I ++G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV--ERGEILLDG 66
Score = 57.1 bits (139), Expect = 5e-10
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKI 222
I +TILK V+ + GE+ A+MGP+GAGKSTL IL G Y +
Sbjct: 12 SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV 57
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 62.6 bits (153), Expect = 6e-12
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSITING 91
+K IL+ +S + GE+ AIMGP+G+GKSTL L G Y+ T G++ G
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV--TGGTVEFKG 83
Score = 56.8 bits (138), Expect = 6e-10
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKI 222
+ +K IL+ +S + GE+ AIMGP+G+GKSTL L G Y++
Sbjct: 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV 74
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 62.2 bits (152), Expect = 2e-11
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---E 93
+ EK L VS + G+ A++G SG+GKST+ N+ T Y GSI ++GH +
Sbjct: 352 QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDVRD 409
Query: 94 RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
L+ R+ + Q+ L N T+ N+A + + R+ + +
Sbjct: 410 YKLTNLRRHFALVSQNVHLF-NDTIAN--NIA----YAAEG-EYTREQIEQ 452
Score = 50.3 bits (121), Expect = 2e-07
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
EK L VS + G+ A++G SG+GKST+ N+ T
Sbjct: 355 EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT 390
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 61.8 bits (151), Expect = 2e-11
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 23/114 (20%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING----------- 91
+L +S L GE+ I+G SG GK+TLL L G++ G I+++G
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP-DSGEISLSGKTIFSKNTNLP 76
Query: 92 -HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
ER L Y++Q+ L +LTV N+A L GK A + +
Sbjct: 77 VRERRLG-------YLVQEGVLFPHLTVYR--NIAYGLGNGK-GRTAQERQRIE 120
Score = 46.4 bits (111), Expect = 3e-06
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+L +S L GE+ I+G SG GK+TLL L G
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 61.2 bits (149), Expect = 3e-11
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 24/115 (20%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTL---LNILTGYKTSGTEGSITINGHE------RN 95
L +VS + +G++ ++G SGAGKSTL +N+L TEGS+ ++G E
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP----TEGSVLVDGQELTTLSESE 99
Query: 96 LSQFRKLSCYIMQDNQLHANL----TVEEAMNVATALKLGKDLTKAARKDVVRTL 146
L++ R+ I Q H NL TV NVA L+L K K V L
Sbjct: 100 LTKARRQIGMIFQ----HFNLLSSRTVFG--NVALPLELDN-TPKDEVKRRVTEL 147
Score = 40.0 bits (94), Expect = 4e-04
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL 214
L +VS + +G++ ++G SGAGKSTL+
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLI 71
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 61.1 bits (149), Expect = 3e-11
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 21/117 (17%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING------- 91
P ++ VS ++R GE+ ++GPSG+GK+T+L ++ G + T+G + I G
Sbjct: 25 PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-TKGDVWIGGKRVTDLP 83
Query: 92 -HERNLSQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
+RN+ F Q+ L ++TV + NV+ L+ K + K VR L
Sbjct: 84 PQKRNVGLVF--------QNYALFQHMTVYD--NVSFGLRE-KRVPKDEMDARVREL 129
Score = 46.5 bits (111), Expect = 3e-06
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
++ VS ++R GE+ ++GPSG+GK+T+L ++ G
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 59.9 bits (146), Expect = 4e-11
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------E 93
LK+V+ ++ GE +IMGPSG+GKST+LNI+ G TEG + I+ +
Sbjct: 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTNDLDD 74
Query: 94 RNLSQFRKLSC-YIMQDNQLHANLTVEEAMNVA 125
L++ R+ ++ Q L LT E NV
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALE--NVE 105
Score = 55.2 bits (134), Expect = 2e-09
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
LK+V+ ++ GE +IMGPSG+GKST+LNI+
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 60.3 bits (147), Expect = 4e-11
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH-----E 93
+ LK ++ ++ GE+TAI+G +G GKSTL G + G I +
Sbjct: 18 SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-PSSGRILFDNKPIDYSR 76
Query: 94 RNLSQFRKLSCYIMQ--DNQLHANLTVEE 120
+ + + R+ + Q DNQL + +V +
Sbjct: 77 KGIMKLRESIGIVFQDPDNQLFSA-SVYQ 104
Score = 44.1 bits (105), Expect = 1e-05
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
LK ++ ++ GE+TAI+G +G GKSTL G
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 61.1 bits (149), Expect = 5e-11
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---E 93
E L++++ ++ +G+ A++G SG+GKST+ +++T Y EG I ++GH E
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDLRE 409
Query: 94 RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVA 125
L+ R + Q+ L N TV N+A
Sbjct: 410 YTLASLRNQVALVSQNVHLF-NDTVAN--NIA 438
Score = 49.9 bits (120), Expect = 2e-07
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
E L++++ ++ +G+ A++G SG+GKST+ +++T
Sbjct: 355 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 390
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 57.5 bits (140), Expect = 3e-10
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE-RNL 96
+ + IL+ +S + + A GPSG GKST+ ++L Y+ T G ITI+G N+
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNI 69
Query: 97 SQ--FRKLSCYIMQDNQL 112
S +R ++ QD+ +
Sbjct: 70 SLENWRSQIGFVSQDSAI 87
Score = 47.1 bits (113), Expect = 1e-06
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+ IL+ +S + + A GPSG GKST+ ++L
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL 48
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 58.4 bits (142), Expect = 3e-10
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE-RN 95
NE ILK ++ + GE A +G SG GKSTL+N++ Y T G I I+GH ++
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIKD 407
Query: 96 LSQ 98
Sbjct: 408 FLT 410
Score = 47.6 bits (114), Expect = 1e-06
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
E ILK ++ + GE A +G SG GKSTL+N++
Sbjct: 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 58.5 bits (142), Expect = 3e-10
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
+L G E+ +MG +G GK+TL+ +L G EG + N+S
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG-ALKPDEGQDI---PKLNVSMK 418
Query: 100 RKLSCYIMQD 109
+
Sbjct: 419 PQKIAPKFPG 428
Score = 54.6 bits (132), Expect = 7e-09
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ +L G E+ +MG +G GK+TL+ +L G
Sbjct: 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG 400
Score = 46.6 bits (111), Expect = 3e-06
Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 8/116 (6%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGT---EGSITINGHER 94
+ + R G++ ++G +G GKST L IL G G
Sbjct: 88 SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147
Query: 95 NLSQFRKLSCYIMQDN--QLHANLTVEE-AMNVATALKLGKDLTKAARKDVVRTLF 147
S+ + +++D+ + V+ + ++ +L K + +
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVK 203
Score = 45.4 bits (108), Expect = 7e-06
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+ R G++ ++G +G GKST L IL G
Sbjct: 89 ANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 57.6 bits (140), Expect = 4e-10
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE-RNLSQ 98
+ L+ VS + G+ A++GPSGAGKST+L +L Y + G I I+G + ++Q
Sbjct: 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQDISQVTQ 123
Score = 49.5 bits (119), Expect = 3e-07
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+ L+ VS + G+ A++GPSGAGKST+L +L
Sbjct: 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 56.3 bits (137), Expect = 7e-10
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKL 102
+K + ++ G++ ++G +GAGK+T L+ + G + +G I NG + N
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-QKGKIIFNGQDITNKPAHVIN 79
Query: 103 S---CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
+ + ++ LTV E N L +G + ++ + R L
Sbjct: 80 RMGIALVPEGRRIFPELTVYE--N----LMMGA-YNRKDKEGIKRDL 119
Score = 49.0 bits (118), Expect = 3e-07
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 176 AMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
Y IH +K + ++ G++ ++G +GAGK+T L+ + G
Sbjct: 14 VYYGAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 56.0 bits (136), Expect = 1e-09
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
E + + ++ L G++ A++G +G GKSTLL++L G +G I +
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-IQGKIEV--------- 64
Query: 99 FRKLSCYIMQDNQLHANLTVEE 120
++ + ++ Q +V +
Sbjct: 65 YQSIG-FVPQFFSSPFAYSVLD 85
Score = 51.0 bits (123), Expect = 6e-08
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
E + + ++ L G++ A++G +G GKSTLL++L G
Sbjct: 16 AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 56.9 bits (138), Expect = 1e-09
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
L+ G +R GE+ I+GP+G GK+T + +L G TEG + + Q
Sbjct: 366 DYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKVEWDLTVAYKPQ 424
Query: 99 FRKLSCYIMQDNQL 112
+ K Y +L
Sbjct: 425 YIKAE-YEGTVYEL 437
Score = 53.5 bits (129), Expect = 2e-08
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ + L+ G +R GE+ I+GP+G GK+T + +L G
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG 404
Score = 46.1 bits (110), Expect = 4e-06
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-----YKTSGTEGSITINGHERN 95
+ ++ G + I+GP+G GK+T + IL G I N
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 96 LSQ--FRKL 102
Q F +L
Sbjct: 163 ELQNYFERL 171
Score = 45.8 bits (109), Expect = 6e-06
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ ++ G + I+GP+G GK+T + IL G
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 139
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 55.6 bits (135), Expect = 1e-09
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE-RNLS 97
LKS++ + SG A++G +G+GKST+ +L Y EG I I G +
Sbjct: 31 TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---AEGDIKIGGKNVNKYN 87
Query: 98 Q 98
+
Sbjct: 88 R 88
Score = 50.3 bits (121), Expect = 1e-07
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
Y + LKS++ + SG A++G +G+GKST+ +L
Sbjct: 27 YPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 55.6 bits (135), Expect = 2e-09
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLL---NILTGYKTSGTEGSITINGHERNLSQFR 100
+LK VS + R+G++ +I+G SG+GKST L N L +EG+I +NG NL + +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP----SEGAIIVNGQNINLVRDK 76
Query: 101 KLSCYIMQDNQLHA 114
+ NQL
Sbjct: 77 DGQLKVADKNQLRL 90
Score = 45.2 bits (108), Expect = 5e-06
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLL---NIL 217
+LK VS + R+G++ +I+G SG+GKST L N L
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL 55
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 55.7 bits (135), Expect = 2e-09
Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 25/151 (16%)
Query: 18 TNNTNNTNNTNTNTNTNNNCEP-----------NEKTILKSVSGRLRSGELTAIMGPSGA 66
++ ++ ++++ ++ +LK ++ +R GE+ ++GPSG+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGS 61
Query: 67 GKSTLL---NILTGYKTSGTEGSITINGHE-----RNLSQFRKLSCYIMQDNQLHANLTV 118
GKST L N+L + EG I I+G NL++ R+ + Q L ++TV
Sbjct: 62 GKSTFLRCLNLLEDF----DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTV 117
Query: 119 EEAMNVATALKLGKDLTKAARKDVVRTLFYR 149
N+ A + + + L +
Sbjct: 118 LN--NITLAPMKVRKWPREKAEAKAMELLDK 146
Score = 43.0 bits (102), Expect = 3e-05
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
+LK ++ +R GE+ ++GPSG+GKST L
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFL 67
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 55.2 bits (134), Expect = 2e-09
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---E 93
+P+ IL +++ ++ GE+ I+G SG+GKSTL ++ Y G + I+GH
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDLAL 75
Query: 94 RNLSQFRKLSCYIMQDNQL 112
+ + R+ ++QDN L
Sbjct: 76 ADPNWLRRQVGVVLQDNVL 94
Score = 45.5 bits (109), Expect = 4e-06
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
IL +++ ++ GE+ I+G SG+GKSTL ++
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 56.1 bits (136), Expect = 2e-09
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
L+ G ++ GE+ I+GP+G GK+T + +L G TEG I + Q+ K
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKIEWDLTVAYKPQYIK 357
Query: 102 LSCYIMQD 109
+
Sbjct: 358 AD---YEG 362
Score = 51.9 bits (125), Expect = 5e-08
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ + L+ G ++ GE+ I+GP+G GK+T + +L G
Sbjct: 295 KDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG 334
Score = 41.5 bits (98), Expect = 1e-04
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTG-----YKTSGTEGSITINGHERN--LSQFRKL 102
++ G + I+GP+G GKST + IL G I N + F KL
Sbjct: 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKL 101
Score = 40.7 bits (96), Expect = 3e-04
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTG 219
++ G + I+GP+G GKST + IL G
Sbjct: 44 VKEGMVVGIVGPNGTGKSTAVKILAG 69
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 54.8 bits (133), Expect = 2e-09
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE 93
L VS + G++T I+GP+G+GKSTL+N++TG K EG + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKD 70
Score = 47.5 bits (114), Expect = 9e-07
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L VS + G++T I+GP+G+GKSTL+N++TG
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITG 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 55.8 bits (135), Expect = 3e-09
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
L +G + GE+ I+GP+G GK+T IL G + + EGS+T + LS +
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG-EITADEGSVTPEK--QILSYKPQ 337
Query: 102 LSCYIMQDNQLHANLTVEEAM 122
I + +E A
Sbjct: 338 ---RIFPNYDGTVQQYLENAS 355
Score = 49.3 bits (118), Expect = 4e-07
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L +G + GE+ I+GP+G GK+T IL G
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG 316
Score = 46.2 bits (110), Expect = 4e-06
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTGY-KTSGTEGSITINGHERNLSQFR--KLSCY--- 105
++ + ++G +G GK+T+L IL G + + + + G + L +FR ++ Y
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV-GKDEVLKRFRGKEIYNYFKE 80
Query: 106 IMQDNQ 111
+ +
Sbjct: 81 LYSNEL 86
Score = 44.2 bits (105), Expect = 2e-05
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTGYKI 222
++ + ++G +G GK+T+L IL G I
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEII 50
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 55.3 bits (134), Expect = 3e-09
Identities = 23/106 (21%), Positives = 51/106 (48%), Gaps = 19/106 (17%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--------HE 93
L ++S ++ SGE I+GP+GAGK+ L ++ G+ G I ++G +
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-DSGRILLDGKDVTDLSPEK 71
Query: 94 RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 139
+++ ++ Q+ L ++ V++ N+ +++ K + R
Sbjct: 72 HDIA-------FVYQNYSLFPHMNVKK--NLEFGMRMKK-IKDPKR 107
Score = 41.8 bits (99), Expect = 9e-05
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L ++S ++ SGE I+GP+GAGK+ L ++ G
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG 48
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 7e-09
Identities = 31/182 (17%), Positives = 56/182 (30%), Gaps = 49/182 (26%)
Query: 95 NLSQFRK-LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN 153
F C +QD + L+ EE ++ + ++ R +
Sbjct: 25 FEDAFVDNFDCKDVQD-MPKSILSKEEIDHI---IMSKDAVSGTLR---LFWTLLSKQEE 77
Query: 154 HAQRC----------FLSGPWGTFESSVLLALAMY-------------------NRIHEK 184
Q+ FL P T + + MY +R+
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTL-LNILTGYKILRQL-----WLLEYSHKDLAL 238
L+ LR + I G G+GK+ + L++ YK+ ++ WL +L
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL------NLKN 191
Query: 239 CR 240
C
Sbjct: 192 CN 193
Score = 51.4 bits (122), Expect = 1e-07
Identities = 36/242 (14%), Positives = 66/242 (27%), Gaps = 67/242 (27%)
Query: 22 NNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTL-LNILTGYKT 80
+ N N N L+ LR + I G G+GK+ + L++ YK
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK- 175
Query: 81 SGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATA-LKLGKDLTKAAR 139
V+ M+ L L +
Sbjct: 176 -------------------------------------VQCKMDFKIFWLNLKNCNSPETV 198
Query: 140 KDVVRTLFYRSDTNHAQRCFLSGP------WGTFESSVLLALAMYNR-------IHEKTI 186
++++ L Y+ D N R S E LL Y +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 187 LKSVSGR---L---RSGELTAIMGPSGAGKSTLLNILTGY------KILRQLWLLEYSHK 234
+ + L R ++T + + +L + +L + + L+ +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-Y-LDCRPQ 316
Query: 235 DL 236
DL
Sbjct: 317 DL 318
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 54.3 bits (131), Expect = 9e-09
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH 92
E ILK ++ +++SG+ A++G SG GKST + ++ Y +G ++I+G
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDGQ 452
Score = 54.3 bits (131), Expect = 1e-08
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---ERNL 96
+L+ +S ++ G+ A++G SG GKST++ +L Y GS+ ++G + N+
Sbjct: 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKEIKQLNV 1102
Query: 97 SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
R + Q+ L + ++ E N+A G + + +++VR
Sbjct: 1103 QWLRAQLGIVSQEPILF-DCSIAE--NIA----YGDNSRVVSYEEIVR 1143
Score = 47.3 bits (113), Expect = 2e-06
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
E ILK ++ +++SG+ A++G SG GKST + ++
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437
Score = 43.5 bits (103), Expect = 3e-05
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+L+ +S ++ G+ A++G SG GKST++ +L
Sbjct: 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 54.1 bits (131), Expect = 1e-08
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKTSGTEGSITINGH---ERN 95
N +L V+ ++ G L A++G +G+GKSTL+N I G + ++
Sbjct: 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELDVRTVK 411
Query: 96 LSQFRKLSCYIMQDNQL 112
L R + Q+ L
Sbjct: 412 LKDLRGHISAVPQETVL 428
Score = 43.7 bits (104), Expect = 3e-05
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
+L V+ ++ G L A++G +G+GKSTL+N
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMN 387
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 53.8 bits (130), Expect = 1e-08
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---ERNL 96
E I + S + SG +TA++GPSG+GKST+L++L Y G+I+++GH + N
Sbjct: 356 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP--ASGTISLDGHDIRQLNP 413
Query: 97 SQFRK 101
R
Sbjct: 414 VWLRS 418
Score = 47.6 bits (114), Expect = 1e-06
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
E I + S + SG +TA++GPSG+GKST+L++L
Sbjct: 356 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 390
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 52.6 bits (127), Expect = 4e-08
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE-RNLS- 97
+K +LK ++ ++ G+ A++GP+G+GK+T++N+L Y G I ++G + R +
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGIDIRKIKR 424
Query: 98 -QFRKLSCYIMQD 109
R ++QD
Sbjct: 425 SSLRSSIGIVLQD 437
Score = 45.2 bits (108), Expect = 9e-06
Identities = 13/36 (36%), Positives = 28/36 (77%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
+K +LK ++ ++ G+ A++GP+G+GK+T++N+L
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 51.0 bits (123), Expect = 5e-08
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 55 GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--------HERNLSQFRKLSCYI 106
+ ++GP+GAGKS L ++ G G + +NG R + +
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPERRGIGF-------V 75
Query: 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
QD L +L+V N+A L +++ + R VR
Sbjct: 76 PQDYALFPHLSVYR--NIAYGL---RNVERVERDRRVR 108
Score = 37.5 bits (88), Expect = 0.002
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 197 GELTAIMGPSGAGKSTLLNILTG 219
+ ++GP+GAGKS L ++ G
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAG 46
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 50.2 bits (121), Expect = 1e-07
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
E +LK ++ ++ G+L A+ G +GAGK++LL ++ G + +EG I +G
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSG 69
Score = 42.5 bits (101), Expect = 4e-05
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK ++ ++ G+L A+ G +GAGK++LL ++ G
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 50.2 bits (121), Expect = 1e-07
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
++ L ++ + G L A++G G GKS+LL+ L + EG + I G
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA-EMDKVEGHVAIKG 66
Score = 43.3 bits (103), Expect = 2e-05
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ L ++ + G L A++G G GKS+LL+ L
Sbjct: 16 SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 53
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 1e-07
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 51/151 (33%)
Query: 96 LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA 155
L++F +CY ++ N +HA +A L D T K++++ + +
Sbjct: 88 LTEFE--NCY-LEGNDIHA---------LAAKLLQENDTTLVKTKELIKN-YITA----- 129
Query: 156 QRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
R P+ +S L G + L AI G G G N
Sbjct: 130 -RIMAKRPFDKKSNSALFRAVG-------------EGNAQ---LVAIFG--GQG-----N 165
Query: 216 ILTGYKILRQLW---------LLEYSHKDLA 237
++ LR L+ L+++S + L+
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Score = 33.9 bits (77), Expect = 0.045
Identities = 40/243 (16%), Positives = 65/243 (26%), Gaps = 90/243 (37%)
Query: 35 NNCEPNEKTIL----KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN 90
NN P TI K R + G K+ + ++ S T
Sbjct: 1667 NN--PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST----SYTFR 1720
Query: 91 GHERNLSQFRKLSCYIMQDNQLHANLTVEEAM--------------NVA-------TALK 129
+ LS Q Q A +E+A A AL
Sbjct: 1721 SEKGLLSA--------TQFTQP-ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL- 1770
Query: 130 LGKDLTKAAR------KDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHE 183
A+ + +V +FYR T Q G S+ + R+
Sbjct: 1771 -------ASLADVMSIESLVEVVFYRGMT--MQVAVPRDELG--RSNYGMIAINPGRVAA 1819
Query: 184 -------KTILKSVSGRLR-----------------SGELTAIMGPSGAGKSTLLNILTG 219
+ +++ V R +G+L A+ T+ N+L
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL--------DTVTNVLNF 1871
Query: 220 YKI 222
K+
Sbjct: 1872 IKL 1874
Score = 28.1 bits (62), Expect = 3.7
Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 68/181 (37%)
Query: 86 SITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMN-VATALKLGKDLTKAARKDVVR 144
S + G + Q L+ Y++ L T E + + A + L A +
Sbjct: 237 SCPLIG----VIQ---LAHYVVTAKLL--GFTPGELRSYLKGATGHSQGLVTAV---AIA 284
Query: 145 TLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMY----NRIHEK--------TILK---- 188
+D+ W +F SV A+ + R +E +IL+
Sbjct: 285 E----TDS-----------WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 189 ----------SVSGRLRSGELTAIM------GPSGAGKS-TLLN-----ILTGY-KILRQ 225
S+S L ++ + P+G +L+N +++G + L
Sbjct: 330 NNEGVPSPMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 226 L 226
L
Sbjct: 389 L 389
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 49.8 bits (120), Expect = 2e-07
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---ERNL 96
+L+ ++ L G++TA++GP+G+GKST+ +L Y+ T G + ++G + +
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPLVQYDH 88
Query: 97 SQFRK 101
Sbjct: 89 HYLHT 93
Score = 45.6 bits (109), Expect = 4e-06
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+L+ ++ L G++TA++GP+G+GKST+ +L
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 50.4 bits (120), Expect = 2e-07
Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 9/170 (5%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
K + ++ + A++GP+GAGKSTL+N+LTG + T G + + + R
Sbjct: 683 GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG-ELLPTSGEVYTHENCR---- 737
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC 158
YI Q H +++ + + + R + +
Sbjct: 738 ----IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIF 793
Query: 159 FLSGPWGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGA 208
+ G +E + L + ++S +M A
Sbjct: 794 KIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNA 843
Score = 44.6 bits (105), Expect = 2e-05
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
K + ++ + A++GP+GAGKSTL+N+LTG
Sbjct: 685 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721
Score = 43.5 bits (102), Expect = 4e-05
Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 42/145 (28%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
K +L RL+ I GP+G GKSTL+ + + G R
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDG----FPTQEECR----- 496
Query: 100 RKLSCYIMQDNQ-LHANLTVEEAMN---------VATAL-KLGKDLTKAARK-------- 140
+ Y+ D H++ +V + + + L + G A
Sbjct: 497 ---TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGW 553
Query: 141 ----DVVRTLFYRSD-------TNH 154
+ R + +D TNH
Sbjct: 554 KMKLALARAVLRNADILLLDEPTNH 578
Score = 41.9 bits (98), Expect = 1e-04
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222
K +L RL+ I GP+G GKSTL+ + ++
Sbjct: 444 AYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV 486
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 49.3 bits (118), Expect = 3e-07
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 5 EYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPS 64
E NN T+N + + + +N LK ++ ++ G+L A+ G +
Sbjct: 15 EEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPV-LKDINFKIERGQLLAVAGST 73
Query: 65 GAGKSTLLNILTGYKTSGTEGSITING 91
GAGK++LL ++ G + +EG I +G
Sbjct: 74 GAGKTSLLMMIMG-ELEPSEGKIKHSG 99
Score = 42.7 bits (101), Expect = 4e-05
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+LK ++ ++ G+L A+ G +GAGK++LL ++ G
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 48.8 bits (117), Expect = 4e-07
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
+ + L +V+ + +GE I+GPSGAGK+T + I+ G + G + + +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-STGELYFDDRLVASN 72
Query: 98 QFRKLSCY---I-M--QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
+ I M Q L+ NLT E N+A L K ++K + V
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFE--NIAFPLTNMK-MSKEEIRKRVE 122
Score = 39.9 bits (94), Expect = 4e-04
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
L +V+ + +GE I+GPSGAGK+T + I+ G
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 47.2 bits (113), Expect = 2e-06
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 23/116 (19%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ 92
+ + VS ++ GE A++GPSG GK+T L +L G T G I +
Sbjct: 13 FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP-TSGEIYFDDVLVNDIP 71
Query: 93 --ERNLSQFRKLSCYIM--QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
R + M Q+ L+ ++TV E N+A L+ + ++K + V
Sbjct: 72 PKYREVG---------MVFQNYALYPHMTVFE--NIAFPLRARR-ISKDEVEKRVV 115
Score = 38.3 bits (90), Expect = 0.001
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ VS ++ GE A++GPSG GK+T L +L G
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 46.6 bits (111), Expect = 3e-06
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERN 95
IL+++S + G+ ++G +G+GKSTLL+ + TEG I I+G
Sbjct: 31 EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF--LRLLNTEGEIQIDGVSWDSIT 88
Query: 96 LSQFRKLSCYIMQDNQL 112
L Q+RK I Q +
Sbjct: 89 LEQWRKAFGVIPQKVFI 105
Score = 38.9 bits (91), Expect = 7e-04
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
IL+++S + G+ ++G +G+GKSTLL+
Sbjct: 30 TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF 67
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 46.4 bits (111), Expect = 3e-06
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 23/112 (20%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--------ER 94
T L +++ +++ GE A++GPSG+GKSTLL + G T G I + +R
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP-TSGKIYFDEKDVTELPPKDR 75
Query: 95 NLSQFRKLSCYIM--QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
N+ + Q+ L+ ++TV + N+A L+L K + VR
Sbjct: 76 NVG---------LVFQNWALYPHMTVYK--NIAFPLELRK-APREEIDKKVR 115
Score = 38.3 bits (90), Expect = 0.001
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
T L +++ +++ GE A++GPSG+GKSTLL + G
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG 51
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 43.8 bits (104), Expect = 2e-05
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 23/112 (20%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--------ER 94
T + ++ ++ GE ++GPSG GK+T L ++ G + TEG I +R
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEGRIYFGDRDVTYLPPKDR 83
Query: 95 NLSQFRKLSCYIM--QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
N+S M Q + ++TV E N+A LK+ K K VR
Sbjct: 84 NIS---------MVFQSYAVWPHMTVYE--NIAFPLKIKK-FPKDEIDKRVR 123
Score = 36.4 bits (85), Expect = 0.005
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
T + ++ ++ GE ++GPSG GK+T L ++ G
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 43.0 bits (102), Expect = 4e-05
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF--- 99
T ++ +S ++ GE ++GPSG GK+T L ++ G + + G I I +
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRGQIYIGDKLVADPEKGIF 75
Query: 100 -----RKLSCYIM--QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
R ++ M Q L+ ++TV + N+A LKL K + + VR
Sbjct: 76 VPPKDRDIA---MVFQSYALYPHMTVYD--NIAFPLKLRK-VPRQEIDQRVR 121
Score = 37.6 bits (88), Expect = 0.002
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
T ++ +S ++ GE ++GPSG GK+T L ++ G
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG 51
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 42.3 bits (100), Expect = 6e-05
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTG 77
+G ++ G SG GKS+LLN L G
Sbjct: 214 TGRISIFAGQSGVGKSSLLNALLG 237
Score = 42.3 bits (100), Expect = 6e-05
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 196 SGELTAIMGPSGAGKSTLLNILTG 219
+G ++ G SG GKS+LLN L G
Sbjct: 214 TGRISIFAGQSGVGKSSLLNALLG 237
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 42.1 bits (100), Expect = 7e-05
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 196 SGELTAIMGPSGAGKSTLLNILTGYKILR 224
G+++ + G SG GKS+LLN + LR
Sbjct: 168 KGKISTMAGLSGVGKSSLLNAINPGLKLR 196
Score = 41.8 bits (99), Expect = 8e-05
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 54 SGELTAIMGPSGAGKSTLLNIL 75
G+++ + G SG GKS+LLN +
Sbjct: 168 KGKISTMAGLSGVGKSSLLNAI 189
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 42.1 bits (100), Expect = 7e-05
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--------ER 94
+ K ++ + GE +GPSG GKSTLL ++ G +T T G + I ER
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRMNDTPPAER 75
Query: 95 NLSQFRKLSCYIM--QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
+ M Q L+ +L+V E N++ LKL K V
Sbjct: 76 GVG---------MVFQSYALYPHLSVAE--NMSFGLKLAG-AKKEVINQRVN 115
Score = 37.5 bits (88), Expect = 0.002
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
+ K ++ + GE +GPSG GKSTLL ++ G
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 42.2 bits (100), Expect = 7e-05
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 196 SGELTAIMGPSGAGKSTLLNILTGYKI 222
G + + GPSG GKS++L+ LTG ++
Sbjct: 164 EGFICILAGPSGVGKSSILSRLTGEEL 190
Score = 41.4 bits (98), Expect = 1e-04
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTG 77
G + + GPSG GKS++L+ LTG
Sbjct: 164 EGFICILAGPSGVGKSSILSRLTG 187
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 41.8 bits (99), Expect = 9e-05
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 196 SGELTAIMGPSGAGKSTLLNILTGYKILR 224
+ T G SG GKS+LLN ++ LR
Sbjct: 172 QDKTTVFAGQSGVGKSSLLNAISPELGLR 200
Score = 41.4 bits (98), Expect = 1e-04
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 54 SGELTAIMGPSGAGKSTLLNIL 75
+ T G SG GKS+LLN +
Sbjct: 172 QDKTTVFAGQSGVGKSSLLNAI 193
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 40.8 bits (95), Expect = 2e-04
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 39 PNEKTILKSVSGRLRSGELT-AIMGPSGAGKSTLLNILTGYK 79
+ + + S L A+ G +G+GKS+ +N L G
Sbjct: 52 QLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG 93
Score = 40.5 bits (94), Expect = 3e-04
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 182 HEKTILKSVSGRLRSGELT-AIMGPSGAGKSTLLNILTGYKIL 223
+ + + S L A+ G +G+GKS+ +N L G
Sbjct: 53 LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE 95
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 40.2 bits (95), Expect = 4e-04
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKILRQ 225
L+ + G LT++ G SG+GKSTL+N IL +L
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL--AAVLAN 695
Score = 37.5 bits (88), Expect = 0.003
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKT 80
L+ + G LT++ G SG+GKSTL+N IL
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL--AAV 692
Score = 29.8 bits (68), Expect = 0.88
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 73
L+SV L L G SG+GKS+L
Sbjct: 36 LRSVDLDLPRDALIVFTGLSGSGKSSLAF 64
Score = 29.8 bits (68), Expect = 0.88
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
L+SV L L G SG+GKS+L
Sbjct: 36 LRSVDLDLPRDALIVFTGLSGSGKSSLAF 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 40.2 bits (95), Expect = 5e-04
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKILRQ 225
LK+VS ++ G A+ G SG+GKSTL+N +L YK L Q
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL--YKALAQ 677
Score = 37.5 bits (88), Expect = 0.004
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 12/53 (22%)
Query: 38 EPNEKTI---------LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKT 80
P+ + + LK+VS ++ G A+ G SG+GKSTL+N +L YK
Sbjct: 624 RPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL--YKA 674
Score = 29.0 bits (66), Expect = 1.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTL 71
LK++ + G+L + G SG+GKS+L
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 29.0 bits (66), Expect = 1.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTL 213
LK++ + G+L + G SG+GKS+L
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 39.8 bits (94), Expect = 5e-04
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKILRQ 225
LK++ + G + G SG+GKS+L+ L Y L
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETL--YPALMN 637
Score = 36.7 bits (86), Expect = 0.005
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKT 80
LK++ + G + G SG+GKS+L+ L Y
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETL--YPA 634
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 39.1 bits (92), Expect = 8e-04
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKILRQ 225
LK+VS ++ G A+ G SG+GKSTL+N +L YK L Q
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL--YKALAQ 375
Score = 36.4 bits (85), Expect = 0.006
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKT 80
LK+VS ++ G A+ G SG+GKSTL+N +L YK
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL--YKA 372
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 39.0 bits (92), Expect = 9e-04
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKILRQ 225
L ++ R G +T++ G SG+GKSTL++ L L
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQAL--VDALAA 550
Score = 36.7 bits (86), Expect = 0.006
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 73
L ++ R G +T++ G SG+GKSTL++
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVS 541
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 38.7 bits (91), Expect = 0.001
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 42 KTILKSVS-GR-LRSGELTAIMGPSGAGKSTLLNILTGYKTS------GT-----EGSIT 88
++ S GR + G T I G AGKSTLLN L G + + GT E
Sbjct: 218 NRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFI 277
Query: 89 ING 91
+
Sbjct: 278 HDK 280
Score = 35.6 bits (83), Expect = 0.013
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 184 KTILKSVS-GR-LRSGELTAIMGPSGAGKSTLLNILTGY 220
++ S GR + G T I G AGKSTLLN L G
Sbjct: 218 NRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQ 256
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 38.7 bits (91), Expect = 0.001
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTGYKTS------GT-----EGSITINGH 92
L G I+G GKSTLLN L + GT I I G
Sbjct: 240 LNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI 291
Score = 35.2 bits (82), Expect = 0.016
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTGY 220
L G I+G GKSTLLN L
Sbjct: 240 LNRGLRMVIVGKPNVGKSTLLNRLLNE 266
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 38.8 bits (89), Expect = 0.001
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 187 LKSVSGRLRSGELT-AIMGPSGAGKSTLLNILTGYKIL 223
+ S L+ G ++G GKST LN L G +L
Sbjct: 58 ITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGENLL 95
Score = 35.0 bits (79), Expect = 0.019
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 45 LKSVSGRLRSGELT-AIMGPSGAGKSTLLNILTG 77
+ S L+ G ++G GKST LN L G
Sbjct: 58 ITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIG 91
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 38.2 bits (90), Expect = 0.001
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 52 LRSGELTAIMGPSGAGKSTLLNILTGYKTS------GT-----EGSITING 91
LR+G AI+G GKS+LLN + + GT E + + G
Sbjct: 221 LRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG 271
Score = 35.2 bits (82), Expect = 0.015
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 194 LRSGELTAIMGPSGAGKSTLLNILTGY 220
LR+G AI+G GKS+LLN +
Sbjct: 221 LRTGLKVAIVGRPNVGKSSLLNAWSQS 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 36.4 bits (85), Expect = 0.004
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 53 RSGELTAIMGPSGAGKSTLLNIL 75
G + + GPS GKST++ L
Sbjct: 18 AVGRVVVLSGPSAVGKSTVVRCL 40
Score = 36.4 bits (85), Expect = 0.004
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 195 RSGELTAIMGPSGAGKSTLLNIL 217
G + + GPS GKST++ L
Sbjct: 18 AVGRVVVLSGPSAVGKSTVVRCL 40
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 36.0 bits (84), Expect = 0.006
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWL 228
+ + G L + PSGAGKS+L+ L + L +
Sbjct: 6 IHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV 47
Score = 34.8 bits (81), Expect = 0.013
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
+ + G L + PSGAGKS+L+ L
Sbjct: 6 IHHHHHHMAQGTLYIVSAPSGAGKSSLIQAL 36
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 35.5 bits (83), Expect = 0.007
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 53 RSGELTAIMGPSGAGKSTLLNIL 75
G L + GPSG GK T+ +
Sbjct: 4 EKGLLIVLSGPSGVGKGTVRKRI 26
Score = 35.5 bits (83), Expect = 0.007
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 195 RSGELTAIMGPSGAGKSTLLNIL 217
G L + GPSG GK T+ +
Sbjct: 4 EKGLLIVLSGPSGVGKGTVRKRI 26
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 35.5 bits (83), Expect = 0.007
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 53 RSGELTAIMGPSGAGKSTLLNIL 75
G L + GPSG GK T+ +
Sbjct: 6 ERGLLIVLSGPSGVGKGTVREAV 28
Score = 35.5 bits (83), Expect = 0.007
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 195 RSGELTAIMGPSGAGKSTLLNIL 217
G L + GPSG GK T+ +
Sbjct: 6 ERGLLIVLSGPSGVGKGTVREAV 28
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 35.2 bits (82), Expect = 0.009
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+ H + G + + I GPSG GK TL+ L
Sbjct: 5 HHHHHHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKL 43
Score = 34.5 bits (80), Expect = 0.020
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 50 GRLRSGELTAIMGPSGAGKSTLLNIL 75
G + + I GPSG GK TL+ L
Sbjct: 18 GSMNNIYPLVICGPSGVGKGTLIKKL 43
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 35.1 bits (81), Expect = 0.009
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 45 LKSVSGRLRSGELTAIM-GPSGAGKSTLLNILTGYKTSGTEGSIT 88
L SG S + + I+ GP +GK++LL +LT T S
Sbjct: 37 LGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE 81
Score = 32.0 bits (73), Expect = 0.096
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 187 LKSVSGRLRSGELTAIM-GPSGAGKSTLLNILTG 219
L SG S + + I+ GP +GK++LL +LT
Sbjct: 37 LGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTT 70
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 35.5 bits (81), Expect = 0.010
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
+++R E L+ L + LT ++G GKS+LL
Sbjct: 14 IFDREEESRKLEE---SLENYPLTLLLGIRRVGKSSLLR 49
Score = 32.0 bits (72), Expect = 0.16
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 73
+ + L + LT ++G GKS+LL
Sbjct: 21 SRKLEESLENYPLTLLLGIRRVGKSSLLR 49
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 35.5 bits (83), Expect = 0.010
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 195 RSGELTAIMGPSGAGKSTLLNILTGYKI 222
+ G AI+G GKSTLLN L G K+
Sbjct: 9 KVG-YVAIVGKPNVGKSTLLNNLLGTKV 35
Score = 33.6 bits (78), Expect = 0.041
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 53 RSGELTAIMGPSGAGKSTLLNILTGYKTS 81
+ G AI+G GKSTLLN L G K S
Sbjct: 9 KVG-YVAIVGKPNVGKSTLLNNLLGTKVS 36
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 35.1 bits (82), Expect = 0.012
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 195 RSGELTAIMGPSGAGKSTLLNILTGYKI 222
G AI+G GKSTLLN L G KI
Sbjct: 7 YCG-FIAIVGRPNVGKSTLLNKLLGQKI 33
Score = 33.6 bits (78), Expect = 0.040
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 53 RSGELTAIMGPSGAGKSTLLNILTGYKTS 81
G AI+G GKSTLLN L G K S
Sbjct: 7 YCG-FIAIVGRPNVGKSTLLNKLLGQKIS 34
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 34.7 bits (80), Expect = 0.012
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSGTEGSITIN 90
+G +GK+ L L + T+ SIT +
Sbjct: 12 FVGLCDSGKTLLFVRLLTGQYRDTQTSITDS 42
Score = 29.3 bits (66), Expect = 0.93
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 202 IMGPSGAGKSTLLNILTGYKI 222
+G +GK+ L L +
Sbjct: 12 FVGLCDSGKTLLFVRLLTGQY 32
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 34.8 bits (81), Expect = 0.014
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 55 GELTAIMGPSGAGKSTLLNIL 75
+ GPSGAGKSTLL L
Sbjct: 4 PRPVVLSGPSGAGKSTLLKKL 24
Score = 34.8 bits (81), Expect = 0.014
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 197 GELTAIMGPSGAGKSTLLNIL 217
+ GPSGAGKSTLL L
Sbjct: 4 PRPVVLSGPSGAGKSTLLKKL 24
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 34.4 bits (80), Expect = 0.015
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 58 TAIMGPSGAGKSTLLNILTGYKTS------GT-----EGSITING 91
I G AGKS+LLN L G + + GT I I+G
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG 51
Score = 32.1 bits (74), Expect = 0.083
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 200 TAIMGPSGAGKSTLLNILTG 219
I G AGKS+LLN L G
Sbjct: 7 VVIAGRPNAGKSSLLNALAG 26
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 34.4 bits (80), Expect = 0.016
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 191 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYS 232
S + L I PSGAGK++L+ +++ L ++ S
Sbjct: 1 SNAMNKANLFIISAPSGAGKTSLVR-----ALVKALAEIKIS 37
Score = 34.4 bits (80), Expect = 0.018
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 49 SGRLRSGELTAIMGPSGAGKSTLLNIL 75
S + L I PSGAGK++L+ L
Sbjct: 1 SNAMNKANLFIISAPSGAGKTSLVRAL 27
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 34.4 bits (80), Expect = 0.019
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 53 RSGELTAIMGPSGAGKSTLLNIL 75
+ GPSG GK TL+ +
Sbjct: 10 ARIPPLVVCGPSGVGKGTLIKKV 32
Score = 34.4 bits (80), Expect = 0.019
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 195 RSGELTAIMGPSGAGKSTLLNIL 217
+ GPSG GK TL+ +
Sbjct: 10 ARIPPLVVCGPSGVGKGTLIKKV 32
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 34.8 bits (80), Expect = 0.020
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 54 SGELTAIMGPSGAGKSTLL 72
+T + GP+GAGKS+L
Sbjct: 22 QSGITVVEGPNGAGKSSLF 40
Score = 34.8 bits (80), Expect = 0.020
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 196 SGELTAIMGPSGAGKSTLL 214
+T + GP+GAGKS+L
Sbjct: 22 QSGITVVEGPNGAGKSSLF 40
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 34.4 bits (80), Expect = 0.025
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 195 RSGELTAIMGPSGAGKSTLLNILTGYKI 222
SG AI+G GKSTLLN L G K+
Sbjct: 6 YSG-FVAIVGKPNVGKSTLLNNLLGVKV 32
Score = 32.4 bits (75), Expect = 0.10
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 53 RSGELTAIMGPSGAGKSTLLNILTGYKTS 81
SG AI+G GKSTLLN L G K +
Sbjct: 6 YSG-FVAIVGKPNVGKSTLLNNLLGVKVA 33
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 34.0 bits (78), Expect = 0.027
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSGTEGSIT 88
I GP +GK++LL +LT T S
Sbjct: 17 IAGPQNSGKTSLLTLLTTDSVRPTVVSQE 45
Score = 30.1 bits (68), Expect = 0.44
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 14/49 (28%)
Query: 174 ALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222
+ + + ++ +I+ I GP +GK++LL +LT +
Sbjct: 3 HMGIKQKSYQPSII--------------IAGPQNSGKTSLLTLLTTDSV 37
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 34.2 bits (79), Expect = 0.027
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
+ G GKS+ +N L G +
Sbjct: 38 VVAGRRNVGKSSFMNALVGQNV 59
Score = 33.8 bits (78), Expect = 0.037
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 59 AIMGPSGAGKSTLLNILTGYKTS 81
+ G GKS+ +N L G S
Sbjct: 38 VVAGRRNVGKSSFMNALVGQNVS 60
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 34.1 bits (77), Expect = 0.030
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 179 NRIHEKTILKSVSGRLRSGELTAIM--GPSGAGKSTLLNILTG 219
+ + G+ S + AI+ G SGAGK+T+ I
Sbjct: 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54
Score = 34.1 bits (77), Expect = 0.031
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 11/106 (10%)
Query: 41 EKTILKSVSGRLRSGELTAIM--GPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
+ + G+ S + AI+ G SGAGK+T+ I + I+G
Sbjct: 16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK---EFQGNIVIIDGDS--FRS 70
Query: 99 FRKLSCYIM-QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
+ + + T + A + +L + +++
Sbjct: 71 QHPHYLELQQEYGKDSVEYTKDFAGKMVESL---VTKLSSLGYNLL 113
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 33.5 bits (76), Expect = 0.034
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 54 SGELTAIMGPSGAGKSTLLNIL 75
G + + G G+GKST+ L
Sbjct: 8 GGNILLLSGHPGSGKSTIAEAL 29
Score = 33.5 bits (76), Expect = 0.034
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 196 SGELTAIMGPSGAGKSTLLNIL 217
G + + G G+GKST+ L
Sbjct: 8 GGNILLLSGHPGSGKSTIAEAL 29
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 33.7 bits (78), Expect = 0.034
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI 87
G + + PSG GK+T+ N L + + S+
Sbjct: 25 SVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSV 59
Score = 32.9 bits (76), Expect = 0.053
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 195 RSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYS 232
G + + PSG GK+T+ N L + +Q + S
Sbjct: 25 SVGVILVLSSPSGCGKTTVANKL----LEKQKNNIVKS 58
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 33.3 bits (77), Expect = 0.037
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 51 RLRSGELTAIMGPSGAGKSTLLNIL 75
+ + ++G SG G+S + N L
Sbjct: 15 YFQGRKTLVLIGASGVGRSHIKNAL 39
Score = 33.3 bits (77), Expect = 0.037
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 193 RLRSGELTAIMGPSGAGKSTLLNIL 217
+ + ++G SG G+S + N L
Sbjct: 15 YFQGRKTLVLIGASGVGRSHIKNAL 39
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 33.4 bits (77), Expect = 0.048
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 193 RLRSGELT-AIMGPSGAGKSTLLNILTGYKIL 223
R+ + I+G + +GK++L N LTG
Sbjct: 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQK 205
Score = 33.0 bits (76), Expect = 0.061
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 51 RLRSGELT-AIMGPSGAGKSTLLNILTG 77
R+ + I+G + +GK++L N LTG
Sbjct: 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTG 201
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 32.8 bits (75), Expect = 0.048
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 59 AIMGPSGAGKSTL 71
+ GP KST+
Sbjct: 5 ILEGPDCCFKSTV 17
Score = 32.8 bits (75), Expect = 0.048
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 201 AIMGPSGAGKSTL 213
+ GP KST+
Sbjct: 5 ILEGPDCCFKSTV 17
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 33.2 bits (75), Expect = 0.049
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 50 GRLRSGELTAIMGPSGAGKSTLL 72
+ +G + A++ P GAGKS L
Sbjct: 25 PNMVAGTVGALVSPGGAGKSMLA 47
Score = 33.2 bits (75), Expect = 0.049
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 192 GRLRSGELTAIMGPSGAGKSTLL 214
+ +G + A++ P GAGKS L
Sbjct: 25 PNMVAGTVGALVSPGGAGKSMLA 47
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 33.2 bits (75), Expect = 0.050
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 50 GRLRSGELTAIM--GPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107
G L SG +M G SG GKSTL+N L + T H + + S ++
Sbjct: 1 GPLGSGFEFTLMVVGESGLGKSTLINSL--FLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 58
Query: 108 QDNQLHANLTV 118
++ + LT+
Sbjct: 59 KEGGVQLLLTI 69
Score = 32.8 bits (74), Expect = 0.066
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 192 GRLRSGELTAIM--GPSGAGKSTLLNILTGYKILRQLWLLEYSH 233
G L SG +M G SG GKSTL+N L + +
Sbjct: 1 GPLGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHR 44
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 33.5 bits (76), Expect = 0.051
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQL 226
++ G SGAG ST+ + +I R+
Sbjct: 9 SVTGSSGAGTSTVKHTFD--QIFRRE 32
Score = 31.2 bits (70), Expect = 0.29
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 59 AIMGPSGAGKSTLLNILT 76
++ G SGAG ST+ +
Sbjct: 9 SVTGSSGAGTSTVKHTFD 26
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 32.8 bits (76), Expect = 0.052
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 57 LTAIMGPSGAGKSTLLNIL 75
I GPSG GKSTLL L
Sbjct: 3 PIVISGPSGTGKSTLLKKL 21
Score = 32.8 bits (76), Expect = 0.052
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 199 LTAIMGPSGAGKSTLLNIL 217
I GPSG GKSTLL L
Sbjct: 3 PIVISGPSGTGKSTLLKKL 21
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 33.0 bits (75), Expect = 0.054
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 199 LTAIMGPSGAGKSTLLNIL---TGYKILR 224
L + G GK+TL L +L
Sbjct: 7 LIIVTGHPATGKTTLSQALATGLRLPLLS 35
Score = 31.4 bits (71), Expect = 0.14
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 57 LTAIMGPSGAGKSTLLNIL 75
L + G GK+TL L
Sbjct: 7 LIIVTGHPATGKTTLSQAL 25
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 33.1 bits (76), Expect = 0.058
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 59 AIMGPSGAGKSTLLNILTGYK----TSGTEG 85
A G S AGKST +N+L K S T G
Sbjct: 33 AFAGRSNAGKSTAINVLCNQKRLAFASKTPG 63
Score = 30.7 bits (70), Expect = 0.31
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
A G S AGKST +N+L K L
Sbjct: 33 AFAGRSNAGKSTAINVLCNQKRL 55
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 33.0 bits (75), Expect = 0.066
Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 15/119 (12%)
Query: 17 NTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 76
+ + L R G+ ++G + GKST +N +
Sbjct: 127 KQLGLKPEDVFLISAAKGQGIA-----ELADAIEYYRGGKDVYVVGCTNVGKSTFINRMI 181
Query: 77 GYKTSGTEGSITIN---GHERNLSQFR---KLSCY----IMQDNQLHANLTVEEAMNVA 125
+ TE IT + G +L + S Y I+ +Q+ + + +
Sbjct: 182 KEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLIT 240
Score = 29.2 bits (65), Expect = 1.1
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ 225
L R G+ ++G + GKST +N +
Sbjct: 150 LADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDET 188
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 32.6 bits (75), Expect = 0.069
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 59 AIMGPSGAGKSTLLNILTGYK---TSGTEG 85
A +G S GKS+LLN L K S T G
Sbjct: 27 AFVGRSNVGKSSLLNALFNRKIAFVSKTPG 56
Score = 30.2 bits (69), Expect = 0.40
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILR 224
A +G S GKS+LLN L KI
Sbjct: 27 AFVGRSNVGKSSLLNALFNRKIAF 50
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex
(hydrolase- immunoglobulin) complex; HET: NAG BMA MAN;
2.20A {Influenza a virus} SCOP: b.68.1.1
Length = 470
Score = 33.1 bits (75), Expect = 0.070
Identities = 12/46 (26%), Positives = 16/46 (34%)
Query: 2 NSQEYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKS 47
+ E N + T N N TN T +NTN + K
Sbjct: 46 SQPEATNASQTIINNYYNETNITQISNTNIQVEERASREFNNLTKG 91
Score = 31.5 bits (71), Expect = 0.24
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 2 NSQEYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVS 49
S+ N + T N N TN T + NTN E +++
Sbjct: 43 CSRSQPEATNASQTIINNYYNETNITQIS-NTNIQVEERASREFNNLT 89
Score = 27.7 bits (61), Expect = 3.8
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 1 MNSQEYVNTNNTNNTNNTNNTNNTN---NTNTNTNTNNNCEP 39
+ NN N N +NTN + NN +
Sbjct: 50 ATNASQTIINNYYNETNITQISNTNIQVEERASREFNNLTKG 91
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 32.4 bits (75), Expect = 0.075
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 59 AIMGPSGAGKSTL 71
I GPS +GKS++
Sbjct: 6 TIDGPSASGKSSV 18
Score = 32.4 bits (75), Expect = 0.075
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 201 AIMGPSGAGKSTL 213
I GPS +GKS++
Sbjct: 6 TIDGPSASGKSSV 18
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 32.6 bits (75), Expect = 0.076
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 59 AIMGPSGAGKSTLLNILTGYK----TSGTEG 85
A G S AGKS+ LN LT K TS T G
Sbjct: 30 AFAGRSNAGKSSALNTLTNQKSLARTSKTPG 60
Score = 30.3 bits (69), Expect = 0.40
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
A G S AGKS+ LN LT K L
Sbjct: 30 AFAGRSNAGKSSALNTLTNQKSL 52
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.079
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 10/35 (28%)
Query: 41 EKTILKSVSGRLRSGEL----TAIMGPSGAGKSTL 71
EK LK + L+ L +A P+ A K+T+
Sbjct: 18 EKQALKKLQASLK---LYADDSA---PALAIKATM 46
Score = 32.2 bits (72), Expect = 0.079
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 10/35 (28%)
Query: 183 EKTILKSVSGRLRSGEL----TAIMGPSGAGKSTL 213
EK LK + L+ L +A P+ A K+T+
Sbjct: 18 EKQALKKLQASLK---LYADDSA---PALAIKATM 46
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 32.1 bits (74), Expect = 0.080
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 59 AIMGPSGAGKSTLLNILTGYK----TSGTEG 85
A+ G S GKS+ +N L K TS G
Sbjct: 27 ALAGRSNVGKSSFINSLINRKNLARTSSKPG 57
Score = 29.8 bits (68), Expect = 0.46
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
A+ G S GKS+ +N L K L
Sbjct: 27 ALAGRSNVGKSSFINSLINRKNL 49
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 32.3 bits (74), Expect = 0.087
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 59 AIMGPSGAGKSTLLNILTGYK--TSGTEG 85
G S GKSTL+ LTG K G
Sbjct: 5 IFAGRSNVGKSTLIYRLTGKKVRRGKRPG 33
Score = 30.7 bits (70), Expect = 0.25
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
G S GKSTL+ LTG K+
Sbjct: 5 IFAGRSNVGKSTLIYRLTGKKV 26
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 33.0 bits (75), Expect = 0.087
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 50 GRLRSGELTAIMGPSGAGKSTLL 72
G + G +G GK+ L+
Sbjct: 276 GGFFKDSIILATGATGTGKTLLV 298
Score = 33.0 bits (75), Expect = 0.087
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 192 GRLRSGELTAIMGPSGAGKSTLL 214
G + G +G GK+ L+
Sbjct: 276 GGFFKDSIILATGATGTGKTLLV 298
Score = 29.1 bits (65), Expect = 1.2
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 52 LRSGELTAIMGPSGAGKSTLL 72
L G T + G SG GK+
Sbjct: 36 LPIGRSTLVSGTSGTGKTLFS 56
Score = 29.1 bits (65), Expect = 1.2
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 194 LRSGELTAIMGPSGAGKSTLL 214
L G T + G SG GK+
Sbjct: 36 LPIGRSTLVSGTSGTGKTLFS 56
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 32.2 bits (73), Expect = 0.090
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 60 IMGPSGAGKSTLLNIL 75
I GP G GK+ + L
Sbjct: 10 INGPFGVGKTHTAHTL 25
Score = 32.2 bits (73), Expect = 0.090
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 202 IMGPSGAGKSTLLNIL 217
I GP G GK+ + L
Sbjct: 10 INGPFGVGKTHTAHTL 25
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 32.7 bits (74), Expect = 0.092
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 57 LTAIMGPSGAGKSTLLN 73
+ I+G +G+GKS+LL+
Sbjct: 25 INLIIGQNGSGKSSLLD 41
Score = 32.7 bits (74), Expect = 0.092
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 199 LTAIMGPSGAGKSTLLN 215
+ I+G +G+GKS+LL+
Sbjct: 25 INLIIGQNGSGKSSLLD 41
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 32.4 bits (75), Expect = 0.093
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 59 AIMGPSGAGKSTL 71
I GPSGAGK TL
Sbjct: 9 TIDGPSGAGKGTL 21
Score = 32.4 bits (75), Expect = 0.093
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 201 AIMGPSGAGKSTL 213
I GPSGAGK TL
Sbjct: 9 TIDGPSGAGKGTL 21
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 32.1 bits (74), Expect = 0.094
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 55 GELTAIMGPSGAGKSTLLNIL 75
+ ++G G G+ + N L
Sbjct: 5 RKTLVLLGAHGVGRRHIKNTL 25
Score = 32.1 bits (74), Expect = 0.094
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 197 GELTAIMGPSGAGKSTLLNIL 217
+ ++G G G+ + N L
Sbjct: 5 RKTLVLLGAHGVGRRHIKNTL 25
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 32.4 bits (75), Expect = 0.095
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 59 AIMGPSGAGKSTL 71
A+ GP+G GKS++
Sbjct: 13 AVDGPAGTGKSSV 25
Score = 32.4 bits (75), Expect = 0.095
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 201 AIMGPSGAGKSTL 213
A+ GP+G GKS++
Sbjct: 13 AVDGPAGTGKSSV 25
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 32.5 bits (73), Expect = 0.098
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTV 118
++G SG GKSTL+N L Q S +++ + LTV
Sbjct: 23 VVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEA-STVEIEERGVKLRLTV 80
Score = 30.5 bits (68), Expect = 0.39
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 202 IMGPSGAGKSTLLNILTGYKILRQ 225
++G SG GKSTL+N L + +
Sbjct: 23 VVGESGLGKSTLINSLFLTDLYPE 46
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 32.7 bits (74), Expect = 0.098
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
++R E LK + + T ++G GKS+++
Sbjct: 15 FFDREKEIEKLKGLRAPI-----TLVLGLRRTGKSSIIK 48
Score = 27.7 bits (61), Expect = 3.1
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 55 GELTAIMGPSGAGKSTLLN 73
+T ++G GKS+++
Sbjct: 30 APITLVLGLRRTGKSSIIK 48
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 32.0 bits (74), Expect = 0.10
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 59 AIMGPSGAGKSTL 71
A+ GP+ AGKST+
Sbjct: 7 ALDGPAAAGKSTI 19
Score = 32.0 bits (74), Expect = 0.10
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 201 AIMGPSGAGKSTL 213
A+ GP+ AGKST+
Sbjct: 7 ALDGPAAAGKSTI 19
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 32.5 bits (74), Expect = 0.10
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 7/40 (17%)
Query: 191 SGRLRSGELTAIMGPSGAGKSTLL-------NILTGYKIL 223
S L+ G T + GAGK+ + L
Sbjct: 2 SHMLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTL 41
Score = 31.3 bits (71), Expect = 0.27
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 49 SGRLRSGELTAIMGPSGAGKSTLL 72
S L+ G T + GAGK+
Sbjct: 2 SHMLKKGMTTVLDFHPGAGKTRRF 25
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 32.6 bits (74), Expect = 0.11
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 9/90 (10%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN--GHERNLSQFR-- 100
+ R R G ++G + GKST +N + T T G ++ +
Sbjct: 152 VMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE 211
Query: 101 -KLSCY----IMQDNQLHANLTVEEAMNVA 125
+ Y I+ +Q+ + + +
Sbjct: 212 SGATLYDTPGIINHHQMAHFVDARDLKIIT 241
Score = 28.4 bits (63), Expect = 2.5
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ 225
+ R R G ++G + GKST +N + +
Sbjct: 152 VMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEATGKG 190
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 31.9 bits (73), Expect = 0.11
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 57 LTAIMGPSGAGKSTLL 72
+ I+G +G+GKS+LL
Sbjct: 25 INLIIGQNGSGKSSLL 40
Score = 31.9 bits (73), Expect = 0.11
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 199 LTAIMGPSGAGKSTLL 214
+ I+G +G+GKS+LL
Sbjct: 25 INLIIGQNGSGKSSLL 40
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 32.0 bits (72), Expect = 0.11
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 60 IMGPSGAGKSTLLNIL 75
+MG SG+GKS++ +
Sbjct: 23 VMGVSGSGKSSVGEAI 38
Score = 32.0 bits (72), Expect = 0.11
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 202 IMGPSGAGKSTLLNIL 217
+MG SG+GKS++ +
Sbjct: 23 VMGVSGSGKSSVGEAI 38
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 32.5 bits (74), Expect = 0.11
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 54 SGELTAIMGPSGAGKSTLL 72
+ AI+G +G+GKS++
Sbjct: 24 EKGIVAIIGENGSGKSSIF 42
Score = 32.5 bits (74), Expect = 0.11
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 196 SGELTAIMGPSGAGKSTLL 214
+ AI+G +G+GKS++
Sbjct: 24 EKGIVAIIGENGSGKSSIF 42
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 32.0 bits (74), Expect = 0.11
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 59 AIMGPSGAGKSTL 71
AI GP+ +GKST+
Sbjct: 20 AIDGPASSGKSTV 32
Score = 32.0 bits (74), Expect = 0.11
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 201 AIMGPSGAGKSTL 213
AI GP+ +GKST+
Sbjct: 20 AIDGPASSGKSTV 32
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 31.5 bits (71), Expect = 0.12
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 60 IMGPSGAGKSTLLNIL 75
+MG SG+GKS + + +
Sbjct: 13 LMGVSGSGKSAVASEV 28
Score = 31.5 bits (71), Expect = 0.12
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 202 IMGPSGAGKSTLLNIL 217
+MG SG+GKS + + +
Sbjct: 13 LMGVSGSGKSAVASEV 28
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 31.6 bits (71), Expect = 0.14
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 60 IMGPSGAGKSTL 71
+MG SG+GK+T+
Sbjct: 34 VMGVSGSGKTTI 45
Score = 31.6 bits (71), Expect = 0.14
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 202 IMGPSGAGKSTL 213
+MG SG+GK+T+
Sbjct: 34 VMGVSGSGKTTI 45
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 31.5 bits (72), Expect = 0.14
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQL 226
I G S +GK+TL N ++ + L
Sbjct: 26 GIDGLSRSGKTTLAN-----QLSQTL 46
Score = 30.8 bits (70), Expect = 0.29
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 59 AIMGPSGAGKSTLLNIL 75
I G S +GK+TL N L
Sbjct: 26 GIDGLSRSGKTTLANQL 42
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 32.0 bits (72), Expect = 0.16
Identities = 22/159 (13%), Positives = 40/159 (25%), Gaps = 47/159 (29%)
Query: 59 AIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTV 118
++G G+GKST+ E L Q ++ H N+
Sbjct: 28 ILVGSPGSGKSTI-----------AEE----------LCQ--IINEKYHTFLSEHPNVIE 64
Query: 119 EEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMY 178
L L V + + G F+ V
Sbjct: 65 VNDRLKPMVN-LVDSLKTLQPNKVAEMIENQ---------------GLFKDHV------- 101
Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+K + + E TA++ G + + +
Sbjct: 102 -EDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAV 139
Score = 29.3 bits (65), Expect = 1.1
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
+K + + E TA++ G + + +
Sbjct: 106 FQPVKYSALTSNNEECTAVVARGGTANAIRIAAV 139
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 30.8 bits (70), Expect = 0.17
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 57 LTAIMGPSGAGKSTLL 72
+ I+G +G+GKS+LL
Sbjct: 25 INLIIGQNGSGKSSLL 40
Score = 30.8 bits (70), Expect = 0.17
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 199 LTAIMGPSGAGKSTLL 214
+ I+G +G+GKS+LL
Sbjct: 25 INLIIGQNGSGKSSLL 40
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 31.4 bits (71), Expect = 0.17
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 202 IMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDL 236
I GP+G GKST T ++ QL Y D+
Sbjct: 7 ITGPAGVGKST-----TCKRLAAQLDNSAYIEGDI 36
Score = 29.9 bits (67), Expect = 0.54
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 60 IMGPSGAGKSTL 71
I GP+G GKST
Sbjct: 7 ITGPAGVGKSTT 18
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 31.7 bits (72), Expect = 0.18
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 11/49 (22%)
Query: 59 AIMGPSGAGKSTLLNILTGYK------TSGT-----EGSITINGHERNL 96
++G G GKS+ +N L G + S T+ G N+
Sbjct: 40 LVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINI 88
Score = 30.2 bits (68), Expect = 0.44
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 201 AIMGPSGAGKSTLLNILTGYK 221
++G G GKS+ +N L G +
Sbjct: 40 LVLGKGGVGKSSTVNSLIGEQ 60
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 31.1 bits (71), Expect = 0.21
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 52 LRSGELTAIMGPSGAGKSTLL 72
+ G A+ G G GK+
Sbjct: 20 IPQGFFIALTGEPGTGKTIFS 40
Score = 31.1 bits (71), Expect = 0.21
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 194 LRSGELTAIMGPSGAGKSTLL 214
+ G A+ G G GK+
Sbjct: 20 IPQGFFIALTGEPGTGKTIFS 40
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 31.7 bits (72), Expect = 0.21
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 19/59 (32%)
Query: 164 WGTF--ESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
GT L LA+ ++ + + ++G + +GK+T LN + +
Sbjct: 242 KGTVPSGVLAYLWLAIEHK---FSAI--------------VVGETASGKTTTLNAIMMF 283
Score = 31.3 bits (71), Expect = 0.31
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 60 IMGPSGAGKSTLLNILTGY 78
++G + +GK+T LN + +
Sbjct: 265 VVGETASGKTTTLNAIMMF 283
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 31.7 bits (72), Expect = 0.23
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 60 IMGPSGAGKSTLLNIL 75
++G +G GK+ +
Sbjct: 928 LVGKAGCGKTATWKTV 943
Score = 31.7 bits (72), Expect = 0.23
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 202 IMGPSGAGKSTLLNIL 217
++G +G GK+ +
Sbjct: 928 LVGKAGCGKTATWKTV 943
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 31.5 bits (70), Expect = 0.23
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIM--GPSGAGKSTLLNILTG 219
+ + + + G+ TA + G G+GK++L + +
Sbjct: 12 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55
Score = 27.7 bits (60), Expect = 3.6
Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 41 EKTILKSVSGRLRSGELTAIM--GPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
+ + + G+ TA + G G+GK++L + + I I+
Sbjct: 17 NDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE---ETQGNVIVIDNDT----- 68
Query: 99 FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
F++ + +L+ V+ + ++ + +
Sbjct: 69 FKQQHPNFDELVKLYEKDVVKHVT--PYSNRMTEAIISRLSD 108
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 30.9 bits (69), Expect = 0.24
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 54 SGELTAIMGPSGAGKSTLLNIL 75
+ + + G S AGKS ++ L
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCL 23
Score = 30.9 bits (69), Expect = 0.24
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 196 SGELTAIMGPSGAGKSTLLNIL 217
+ + + G S AGKS ++ L
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCL 23
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 30.8 bits (70), Expect = 0.24
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
+ +L+ + R +L A+ G G+GKSTL N L
Sbjct: 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPL 42
Score = 30.8 bits (70), Expect = 0.24
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
+ +L+ + R +L A+ G G+GKSTL N L
Sbjct: 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPL 42
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 30.7 bits (69), Expect = 0.25
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 20/88 (22%)
Query: 23 NTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--- 79
+ ++ +++ N + ++ IL +MG +GKS++ ++ +K
Sbjct: 2 HHHHHHSSGRENLYFQGSKPRIL--------------LMGLRRSGKSSIQKVVF-HKMSP 46
Query: 80 --TSGTEGSITINGHERNLSQFRKLSCY 105
T E + I + + S F +
Sbjct: 47 NETLFLESTNKIYKDDISNSSFVNFQIW 74
Score = 28.8 bits (64), Expect = 1.2
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 202 IMGPSGAGKSTLLNIL 217
+MG +GKS++ ++
Sbjct: 25 LMGLRRSGKSSIQKVV 40
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 30.9 bits (70), Expect = 0.28
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 182 HEK---TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLAL 238
H +++ + L + G + +GKST+ + ++L Q + + K + L
Sbjct: 7 HSSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIM--ELLGQNEVEQRQRKVVIL 64
Query: 239 C 239
Sbjct: 65 S 65
Score = 28.6 bits (64), Expect = 1.7
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 59 AIMGPSGAGKSTLLNILT 76
+ G + +GKST+ +
Sbjct: 29 GVSGGTASGKSTVCEKIM 46
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 31.1 bits (70), Expect = 0.29
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 58 TAIMGPSGAGKSTLLNILT 76
I+ GAGKS +L
Sbjct: 38 WTILAKPGAGKSFTAKMLL 56
Score = 31.1 bits (70), Expect = 0.29
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 200 TAIMGPSGAGKSTLLNILT 218
I+ GAGKS +L
Sbjct: 38 WTILAKPGAGKSFTAKMLL 56
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 30.7 bits (69), Expect = 0.29
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
++G +GAGKS N + G K+
Sbjct: 33 VLVGKTGAGKSATGNSILGRKV 54
Score = 30.7 bits (69), Expect = 0.30
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 59 AIMGPSGAGKSTLLNILTGYK 79
++G +GAGKS N + G K
Sbjct: 33 VLVGKTGAGKSATGNSILGRK 53
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 31.3 bits (70), Expect = 0.29
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 72
++ + +LK + S ++ + G G GK+ +
Sbjct: 139 SDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEI 178
Score = 29.0 bits (64), Expect = 1.5
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
+ +LK + S ++ + G G GK+ +
Sbjct: 148 RRLLKDGEPHVSSAKVVLVDGVPGCGKTKEI 178
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 30.9 bits (70), Expect = 0.33
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78
+ + + ++ +V + I G G GKST ++ L
Sbjct: 32 SRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78
Score = 29.3 bits (66), Expect = 0.96
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
++ +V + I G G GKST ++ L
Sbjct: 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 30.8 bits (69), Expect = 0.36
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSG 82
+G +G+GK+TL Y
Sbjct: 19 FVGTAGSGKTTLTGEFGRYLEDN 41
Score = 29.7 bits (66), Expect = 0.82
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 202 IMGPSGAGKSTLLNILTGY 220
+G +G+GK+TL Y
Sbjct: 19 FVGTAGSGKTTLTGEFGRY 37
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 30.6 bits (69), Expect = 0.39
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 52 LRSGELTAIMGPSGAGKSTLL 72
G + G +G GK+T
Sbjct: 27 FPEGTTVLLTGGTGTGKTTFA 47
Score = 30.6 bits (69), Expect = 0.39
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 194 LRSGELTAIMGPSGAGKSTLL 214
G + G +G GK+T
Sbjct: 27 FPEGTTVLLTGGTGTGKTTFA 47
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 30.4 bits (69), Expect = 0.41
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 55 GELTAIMGPSGAGKSTLL 72
+ + G G GK+
Sbjct: 23 RNVVLLSGGPGTGKTIFS 40
Score = 30.4 bits (69), Expect = 0.41
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 197 GELTAIMGPSGAGKSTLL 214
+ + G G GK+
Sbjct: 23 RNVVLLSGGPGTGKTIFS 40
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB:
2obm_A*
Length = 347
Score = 30.7 bits (70), Expect = 0.41
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 60 IMGPSGAGKSTLLNILTGY 78
I SG GKSTLL ++
Sbjct: 76 IFAGSGVGKSTLLGMICNG 94
Score = 30.7 bits (70), Expect = 0.41
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 202 IMGPSGAGKSTLLNILTGY 220
I SG GKSTLL ++
Sbjct: 76 IFAGSGVGKSTLLGMICNG 94
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 30.6 bits (69), Expect = 0.43
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78
+T + + +L + + I G G GKST + L +
Sbjct: 56 STRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102
Score = 29.8 bits (67), Expect = 0.78
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+L + + I G G GKST + L +
Sbjct: 68 LLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 30.4 bits (68), Expect = 0.44
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 59 AIMGPSGAGKSTLLNIL 75
I G G+GK+T LN
Sbjct: 24 LIEGNIGSGKTTYLNHF 40
Score = 30.4 bits (68), Expect = 0.44
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 201 AIMGPSGAGKSTLLNIL 217
I G G+GK+T LN
Sbjct: 24 LIEGNIGSGKTTYLNHF 40
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 30.1 bits (68), Expect = 0.47
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 198 ELTAIMGPSGAGKSTLLNIL----TGYKILRQ 225
++ +G G+GKST G+ + +
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34
Score = 29.0 bits (65), Expect = 0.86
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 56 ELTAIMGPSGAGKSTL 71
++ +G G+GKST
Sbjct: 3 KIILTIGCPGSGKSTW 18
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 30.3 bits (68), Expect = 0.49
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
+MG G GKS+ +N + G ++
Sbjct: 43 LVMGKGGVGKSSTVNSIIGERV 64
Score = 30.3 bits (68), Expect = 0.54
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 59 AIMGPSGAGKSTLLNILTGYK 79
+MG G GKS+ +N + G +
Sbjct: 43 LVMGKGGVGKSSTVNSIIGER 63
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 30.4 bits (69), Expect = 0.50
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 60 IMGPSGAGKSTLLNILTGY 78
+ SG GKS LL ++ Y
Sbjct: 162 LFAGSGVGKSVLLGMMARY 180
Score = 30.4 bits (69), Expect = 0.50
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 202 IMGPSGAGKSTLLNILTGY 220
+ SG GKS LL ++ Y
Sbjct: 162 LFAGSGVGKSVLLGMMARY 180
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 29.9 bits (68), Expect = 0.58
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQL 226
I G + +GK+TL + R L
Sbjct: 10 GIAGGTASGKTTLAQ-----ALARTL 30
Score = 28.4 bits (64), Expect = 1.9
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 59 AIMGPSGAGKSTLLNILT 76
I G + +GK+TL L
Sbjct: 10 GIAGGTASGKTTLAQALA 27
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 30.2 bits (67), Expect = 0.59
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTV 118
++G SG GKSTL+N L Q S +++ + LTV
Sbjct: 42 VVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEA-STVEIEERGVKLRLTV 99
Score = 27.9 bits (61), Expect = 2.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 202 IMGPSGAGKSTLLNILTGYKILRQLWLLEYSHK 234
++G SG GKSTL+N L + + + + K
Sbjct: 42 VVGESGLGKSTLINSLFLTDLYPERVIPGAAEK 74
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 29.8 bits (67), Expect = 0.60
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQL 226
I G + +GK+TL + + L
Sbjct: 25 GISGVTNSGKTTLAK-----NLQKHL 45
Score = 29.4 bits (66), Expect = 0.83
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 59 AIMGPSGAGKSTLLNIL 75
I G + +GK+TL L
Sbjct: 25 GISGVTNSGKTTLAKNL 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 30.2 bits (68), Expect = 0.62
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 194 LRSGELTAIMGPSGAGKSTLL-------NILTGYKIL 223
R LT + GAGK+ + +L + L
Sbjct: 16 FRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTL 52
Score = 28.3 bits (63), Expect = 2.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 52 LRSGELTAIMGPSGAGKSTLL 72
R LT + GAGK+ +
Sbjct: 16 FRKKRLTIMDLHPGAGKTKRI 36
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 29.6 bits (66), Expect = 0.67
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 202 IMGPSGAGKSTLLNILTGYKILRQL 226
I G G GK+TL+ KI+ +L
Sbjct: 5 ITGEPGVGKTTLVK-----KIVERL 24
Score = 27.7 bits (61), Expect = 2.6
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 60 IMGPSGAGKSTLLNILT---GYKTSG--TEGSITINGHERN 95
I G G GK+TL+ + G + G TE +R
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRT 45
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 29.8 bits (67), Expect = 0.69
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78
+ + + +L ++ + + G GAGKST L
Sbjct: 33 SRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79
Score = 29.4 bits (66), Expect = 0.89
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
+L ++ + + G GAGKST L
Sbjct: 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 29.6 bits (66), Expect = 0.70
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 59 AIMGPSGAGKSTLLNIL 75
AI G GAGKST+ +
Sbjct: 4 AIFGTVGAGKSTISAEI 20
Score = 29.6 bits (66), Expect = 0.70
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 201 AIMGPSGAGKSTLLNIL 217
AI G GAGKST+ +
Sbjct: 4 AIFGTVGAGKSTISAEI 20
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 29.7 bits (66), Expect = 0.73
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 198 ELTAIMGPSGAGKST----LLNILTGYKILRQ 225
++ +G G+GKST + G+ + +
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34
Score = 29.3 bits (65), Expect = 0.93
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 56 ELTAIMGPSGAGKSTL 71
++ +G G+GKST
Sbjct: 3 KIILTIGCPGSGKSTW 18
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 29.3 bits (66), Expect = 0.75
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSGTEGSIT 88
GP +GK+T L + G +G +
Sbjct: 19 YYGPGLSGKTTNLKWIYSKVPEGRKGEMV 47
Score = 26.6 bits (59), Expect = 5.6
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 202 IMGPSGAGKSTLLNIL 217
GP +GK+T L +
Sbjct: 19 YYGPGLSGKTTNLKWI 34
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 29.7 bits (66), Expect = 0.79
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 59 AIMGPSGAGKSTLLNIL 75
+I G GKST + +L
Sbjct: 6 SIEGNIAVGKSTFVKLL 22
Score = 29.7 bits (66), Expect = 0.79
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 201 AIMGPSGAGKSTLLNIL 217
+I G GKST + +L
Sbjct: 6 SIEGNIAVGKSTFVKLL 22
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 29.5 bits (67), Expect = 0.80
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Query: 207 GAGKSTLLN-ILT---GYKI 222
GAGK+TLL IL GYKI
Sbjct: 14 GAGKTTLLRHILNEQHGYKI 33
Score = 28.7 bits (65), Expect = 1.8
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 4/20 (20%)
Query: 65 GAGKSTLLN-ILT---GYKT 80
GAGK+TLL IL GYK
Sbjct: 14 GAGKTTLLRHILNEQHGYKI 33
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 29.8 bits (66), Expect = 0.89
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQ 225
+ G GK++ + L ++
Sbjct: 69 LVAGQYSTGKTSFIQYLLEQEVPGS 93
Score = 27.5 bits (60), Expect = 4.2
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 59 AIMGPSGAGKSTLLNILTG 77
+ G GK++ + L
Sbjct: 69 LVAGQYSTGKTSFIQYLLE 87
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis,
nucleotide-B transferase; HET: MSE; 2.01A
{Staphylococcus aureus}
Length = 219
Score = 29.2 bits (66), Expect = 0.96
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 27 TNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKST-LLNILTGYKTSG 82
++ + + ++ P + ++ SG + I G +GKS L+ L +
Sbjct: 4 SHHHHHHSSGLVPRGSHMYET----YHSGWIECITGSMFSGKSEELIRRLRRGIYAK 56
Score = 28.8 bits (65), Expect = 1.4
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 195 RSGELTAIMGPSGAGKST-LLNILTGYKILRQ 225
SG + I G +GKS L+ L +Q
Sbjct: 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQ 57
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 29.1 bits (65), Expect = 1.0
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 201 AIMGPSGAGKSTLLNILT--GYKIL 223
I G G+GKS +L G K++
Sbjct: 5 LITGMPGSGKSEFAKLLKERGAKVI 29
Score = 28.3 bits (63), Expect = 1.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 59 AIMGPSGAGKSTLLNIL 75
I G G+GKS +L
Sbjct: 5 LITGMPGSGKSEFAKLL 21
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 29.0 bits (65), Expect = 1.1
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQL 226
+ G + +GKS++ KI++ L
Sbjct: 26 GVSGGTASGKSSVCA-----KIVQLL 46
Score = 28.7 bits (64), Expect = 1.4
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 59 AIMGPSGAGKST----LLNILTGYKTSGTEGSITI 89
+ G + +GKS+ ++ +L + + + I
Sbjct: 26 GVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVI 60
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 29.2 bits (66), Expect = 1.1
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 10/35 (28%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER 94
+ G +G+GK+TL+ L I +R
Sbjct: 180 VAGETGSGKTTLMKALMQE----------IPFDQR 204
Score = 28.4 bits (64), Expect = 2.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 202 IMGPSGAGKSTLLNILTGY 220
+ G +G+GK+TL+ L
Sbjct: 180 VAGETGSGKTTLMKALMQE 198
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 29.7 bits (67), Expect = 1.1
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 51 RLRSGELTAIMGPSGAGKSTLLNILTGY 78
R+ E A P+G GK++ ++ +
Sbjct: 67 RILRKESFAATAPTGVGKTSFGLAMSLF 94
Score = 29.7 bits (67), Expect = 1.1
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 193 RLRSGELTAIMGPSGAGKSTLLNILTGY 220
R+ E A P+G GK++ ++ +
Sbjct: 67 RILRKESFAATAPTGVGKTSFGLAMSLF 94
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 29.1 bits (65), Expect = 1.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 60 IMGPSGAGKSTLLNILTGY 78
+ GP GAGKST +
Sbjct: 79 LSGPPGAGKSTFIEYFGKM 97
Score = 29.1 bits (65), Expect = 1.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 202 IMGPSGAGKSTLLNILTGY 220
+ GP GAGKST +
Sbjct: 79 LSGPPGAGKSTFIEYFGKM 97
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 28.9 bits (65), Expect = 1.3
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 10/35 (28%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER 94
+ G +G+GK+T + + + I ER
Sbjct: 176 VCGGTGSGKTTYIKSIMEF----------IPKEER 200
Score = 28.1 bits (63), Expect = 2.2
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 202 IMGPSGAGKSTLLNILTGY 220
+ G +G+GK+T + + +
Sbjct: 176 VCGGTGSGKTTYIKSIMEF 194
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 29.0 bits (64), Expect = 1.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 59 AIMGPSGAGKSTLLNIL 75
+I G AGKST +NIL
Sbjct: 28 SIEGNIAAGKSTFVNIL 44
Score = 29.0 bits (64), Expect = 1.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 201 AIMGPSGAGKSTLLNIL 217
+I G AGKST +NIL
Sbjct: 28 SIEGNIAAGKSTFVNIL 44
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 29.0 bits (65), Expect = 1.4
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 194 LRSGELTAIMGPSGAGKSTLL-------NILTGYKIL 223
LR ++T + G+GK+ + I +
Sbjct: 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTA 54
Score = 28.6 bits (64), Expect = 2.0
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 52 LRSGELTAIMGPSGAGKSTLL 72
LR ++T + G+GK+ +
Sbjct: 18 LRKRQMTVLDLHPGSGKTRKI 38
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 28.5 bits (63), Expect = 1.4
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 57 LTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANL 116
+ + G G GKST+L + + + IN + L+ KL +D ++
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 117 TVEEAMNVATALKLGKDLTKAARKDVV 143
++ A K + +A + +
Sbjct: 63 E-KQKKLQIDAAKGIAEEARAGGEGYL 88
Score = 27.4 bits (60), Expect = 3.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 199 LTAIMGPSGAGKSTLLNIL 217
+ + G G GKST+L +
Sbjct: 3 IGIVTGIPGVGKSTVLAKV 21
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 28.8 bits (65), Expect = 1.4
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 18/50 (36%)
Query: 62 GPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQ-DN 110
G S +GKSTL L E L + R++ Y + DN
Sbjct: 32 GLSASGKSTLAVEL-----------------EHQLVRDRRVHAYRLDGDN 64
Score = 26.1 bits (58), Expect = 9.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 204 GPSGAGKSTLLNIL 217
G S +GKSTL L
Sbjct: 32 GLSASGKSTLAVEL 45
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA
damage, DNA recombinat repair, nucleotide-binding; HET:
DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Length = 400
Score = 28.9 bits (64), Expect = 1.4
Identities = 26/136 (19%), Positives = 41/136 (30%), Gaps = 9/136 (6%)
Query: 50 GRLRSGELTAIMGPSGAGKSTL-----LNILTGYKTSGTEGSITINGHERNLSQFRKLS- 103
G + +G +T + G GKS L + G EG E R +S
Sbjct: 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSI 232
Query: 104 --CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLS 161
+ + + N+ A N L+L + + + S R S
Sbjct: 233 AQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALY-RTDFS 291
Query: 162 GPWGTFESSVLLALAM 177
G + LA M
Sbjct: 292 GRGELSARQMHLAKFM 307
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 29.0 bits (64), Expect = 1.5
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLW 227
+H +L+ + G I+G S GK++L L Y + +
Sbjct: 121 IYNLH--FMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAY 168
Score = 28.6 bits (63), Expect = 1.8
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78
N +L+ + G I+G S GK++L L Y
Sbjct: 123 NLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 28.7 bits (65), Expect = 1.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 54 SGELTAIMGPSGAGKSTLL 72
G LT + GP +GK+TL
Sbjct: 19 PGVLTQVYGPYASGKTTLA 37
Score = 28.7 bits (65), Expect = 1.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 196 SGELTAIMGPSGAGKSTLL 214
G LT + GP +GK+TL
Sbjct: 19 PGVLTQVYGPYASGKTTLA 37
>2bf1_A SIV GP120, exterior membrane glycoprotein GP120; virus protein,
envelope glycoprotein, AIDS, coat protein; HET: NAG BMA
NDG FUC MAN; 4.0A {Simian immunodeficiency virus} PDB:
3fus_A*
Length = 316
Score = 28.7 bits (65), Expect = 1.6
Identities = 6/29 (20%), Positives = 8/29 (27%), Gaps = 1/29 (3%)
Query: 6 YVNTNNT-NNTNNTNNTNNTNNTNTNTNT 33
Y N N + + TN N
Sbjct: 214 YCKMNWFLNWVEDRDVTNQRPKERHRRNY 242
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 28.5 bits (63), Expect = 1.6
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 59 AIMGPSGAGKSTLLN-ILTGYKTSG-TEGSITINGH 92
+I+G S +GK+TL+ ++ + G + + H
Sbjct: 6 SIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41
Score = 28.1 bits (62), Expect = 1.8
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 201 AIMGPSGAGKSTLLNIL 217
+I+G S +GK+TL+ +
Sbjct: 6 SIVGTSDSGKTTLITRM 22
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 29.0 bits (65), Expect = 1.7
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 177 MYNRIHEKTILKSVSGRLRSGE-LTAIMGPSGAGKSTL 213
R ++ +L I G +G GKS L
Sbjct: 126 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVL 163
Score = 27.1 bits (60), Expect = 7.1
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 57 LTAIMGPSGAGKSTL 71
I G +G GKS L
Sbjct: 149 WVTIYGMAGCGKSVL 163
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET:
GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Length = 447
Score = 28.8 bits (63), Expect = 1.7
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 31 TNTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG 85
+++ E +E IL S + R + ++ G GKS L++ + Y +
Sbjct: 40 VKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESV 97
Score = 27.7 bits (60), Expect = 3.8
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 201 AIMGPSGAGKSTLLNILTGY 220
++ G GKS L++ + Y
Sbjct: 71 SVAGAFRKGKSFLMDFMLRY 90
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 28.6 bits (64), Expect = 1.8
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 60 IMGPSGAGKSTL 71
+ G G GKST
Sbjct: 50 VFGDRGTGKSTA 61
Score = 28.6 bits (64), Expect = 1.8
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 202 IMGPSGAGKSTL 213
+ G G GKST
Sbjct: 50 VFGDRGTGKSTA 61
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 28.5 bits (63), Expect = 1.9
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222
M++ H + +++ + S ++G +GAGKS N + G +
Sbjct: 1 MHHHHHHSSGRENLYFQGESTRRLILVGRTGAGKSATGNSILGQRR 46
Score = 27.0 bits (59), Expect = 5.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 60 IMGPSGAGKSTLLNILTGYK 79
++G +GAGKS N + G +
Sbjct: 26 LVGRTGAGKSATGNSILGQR 45
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 28.8 bits (63), Expect = 1.9
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 31 TNTNNNCEPNEKT--ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSIT 88
NTN N + IL +++ + + AI+G GKS L+N L G K + GS
Sbjct: 15 ENTNGRLMANPEALKILSAITQPMV---VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTV 71
Score = 26.5 bits (57), Expect = 9.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221
IL +++ + + AI+G GKS L+N L G K
Sbjct: 30 ILSAITQPMV---VVAIVGLYRTGKSYLMNKLAGKK 62
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 28.3 bits (63), Expect = 2.1
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 52 LRSGELTAIMGPSGAGKSTL 71
+ L + G G GKST
Sbjct: 1 MGDIMLIILTGLPGVGKSTF 20
Score = 28.3 bits (63), Expect = 2.1
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 194 LRSGELTAIMGPSGAGKSTL 213
+ L + G G GKST
Sbjct: 1 MGDIMLIILTGLPGVGKSTF 20
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 28.4 bits (63), Expect = 2.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 50 GRLRSGELTAIMGPSGAGKSTL 71
G + + +T + G G+GK+ L
Sbjct: 126 GGIETQAITEVFGEFGSGKTQL 147
Score = 28.4 bits (63), Expect = 2.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 192 GRLRSGELTAIMGPSGAGKSTL 213
G + + +T + G G+GK+ L
Sbjct: 126 GGIETQAITEVFGEFGSGKTQL 147
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.4 bits (63), Expect = 2.1
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 60 IMGPSGAGKSTLLNI----LTGYKTSGTEGSITINGHERNLSQFRKLSCY 105
+MG SG+GKS++ +I + + T +I + L+ +
Sbjct: 8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLW 57
Score = 28.4 bits (63), Expect = 2.2
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 202 IMGPSGAGKSTLLNIL 217
+MG SG+GKS++ +I+
Sbjct: 8 LMGRSGSGKSSMRSII 23
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 28.6 bits (63), Expect = 2.1
Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 8/120 (6%)
Query: 62 GPSGAGKSTLLNILTGYKTSGTEGSITINGHE-----RNLSQFRKLS-CYIMQDNQLHAN 115
G G GK+T + + I E RNL+ + Y Q +L+ +
Sbjct: 19 GAYGIGKTTAAEEFLHHFAITPNRILLI--GEPLSYWRNLAGEDAICGIYGTQTRRLNGD 76
Query: 116 LTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLAL 175
++ E+A + + A + L S ++ Q + + +
Sbjct: 77 VSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIAST 136
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 28.2 bits (63), Expect = 2.2
Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 NTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 76
+ + + ++ E L S++ ++ + G GKS+ +NI++
Sbjct: 5 HHHHHHSSGRENLYFQGLPSINPHKKT---IILSGAPNVGKSSFMNIVS 50
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome
partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 28.3 bits (62), Expect = 2.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 55 GELTAIMGPSGAGKSTLLNIL 75
+T + G +GAGKST +
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAF 47
Score = 28.3 bits (62), Expect = 2.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 197 GELTAIMGPSGAGKSTLLNIL 217
+T + G +GAGKST +
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAF 47
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 28.7 bits (64), Expect = 2.3
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 33 TNNNCEPNEKTILKSV----SGRLRSGELTAIMGPSGAGKSTLLNIL 75
+ ++ + K + + G ++GPSG GK+T +
Sbjct: 882 KQRHLVTKQEWVEKILQLHQILNINHG--VMMVGPSGGGKTTSWEVY 926
Score = 27.6 bits (61), Expect = 5.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 202 IMGPSGAGKSTLLNIL 217
++GPSG GK+T +
Sbjct: 911 MVGPSGGGKTTSWEVY 926
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium,
protein STRU initiative, PSI, structural genomics, DNA
synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum}
SCOP: c.37.1.24 g.39.1.14
Length = 191
Score = 27.9 bits (63), Expect = 2.4
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 195 RSGELTAIMGPSGAGKST-LLNILTGYKILRQ 225
G + I+GP +GKS L+ + KI +Q
Sbjct: 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQ 37
Score = 26.4 bits (59), Expect = 8.0
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 53 RSGELTAIMGPSGAGKST-LLNILTGYKTSG 82
G + I+GP +GKS L+ + K +
Sbjct: 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAK 36
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 28.3 bits (62), Expect = 2.5
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 55 GELTAIMGPSGAGKSTLLN----ILTGYKTS---GTEGSITINGHERNLSQFRKL---SC 104
+T + G +GAGKST + L T R+ + KL C
Sbjct: 29 ELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVC 88
Query: 105 YIMQD 109
Y + +
Sbjct: 89 YAVLE 93
Score = 28.3 bits (62), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 197 GELTAIMGPSGAGKSTLLNIL 217
+T + G +GAGKST +
Sbjct: 29 ELVTTLSGGNGAGKSTTMAGF 49
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 28.1 bits (62), Expect = 2.9
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 60 IMGPSGAGKSTLLNIL 75
+MG GKS++ ++
Sbjct: 4 LMGVRRCGKSSICKVV 19
Score = 28.1 bits (62), Expect = 2.9
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 202 IMGPSGAGKSTLLNIL 217
+MG GKS++ ++
Sbjct: 4 LMGVRRCGKSSICKVV 19
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A*
2zuc_A* 2zud_A*
Length = 324
Score = 27.8 bits (62), Expect = 2.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 50 GRLRSGELTAIMGPSGAGKSTL 71
G + + +T G G+GK+ L
Sbjct: 102 GGIETRTMTEFFGEFGSGKTQL 123
Score = 27.8 bits (62), Expect = 2.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 192 GRLRSGELTAIMGPSGAGKSTL 213
G + + +T G G+GK+ L
Sbjct: 102 GGIETRTMTEFFGEFGSGKTQL 123
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 28.1 bits (63), Expect = 3.0
Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 57 LTAIMGPSGAGKSTLLNI 74
T+I+GP+G+GKS N+
Sbjct: 28 FTSIIGPNGSGKS---NM 42
Score = 28.1 bits (63), Expect = 3.0
Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 199 LTAIMGPSGAGKSTLLNI 216
T+I+GP+G+GKS N+
Sbjct: 28 FTSIIGPNGSGKS---NM 42
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA
replication, viral replication, nucleotide-binding;
2.10A {Kokobera virus} PDB: 2v6j_A
Length = 431
Score = 27.9 bits (62), Expect = 3.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 55 GELTAIMGPSGAGKSTLL 72
ELT + GAGK+ +
Sbjct: 2 RELTVLDLHPGAGKTRRV 19
Score = 27.9 bits (62), Expect = 3.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 197 GELTAIMGPSGAGKSTLL 214
ELT + GAGK+ +
Sbjct: 2 RELTVLDLHPGAGKTRRV 19
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 27.3 bits (60), Expect = 3.2
Identities = 10/87 (11%), Positives = 22/87 (25%), Gaps = 12/87 (13%)
Query: 54 SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN------------GHERNLSQFRK 101
++ + G G G +T + ++ + Q RK
Sbjct: 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK 61
Query: 102 LSCYIMQDNQLHANLTVEEAMNVATAL 128
+ + Q A + E +
Sbjct: 62 MDPETQKRIQKMAGRKIAEMAKESPVA 88
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding,
deoxyribonucleoside kinase, DNA synthesis, phosphate
accept nucleotide-binding; HET: THM; 2.7A {Bacillus
anthracis} PDB: 2ja1_A*
Length = 214
Score = 27.6 bits (62), Expect = 3.3
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 195 RSGELTAIMGPSGAGKST-LLNILTGYKILRQ 225
++G + I G +GKS L+ + + +Q
Sbjct: 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQ 57
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 27.3 bits (60), Expect = 3.5
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQL 226
++G +GK+TL+ K +
Sbjct: 8 QVVGYKHSGKTTLME-----KWVAAA 28
Score = 26.9 bits (59), Expect = 4.0
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 59 AIMGPSGAGKSTLLNIL 75
++G +GK+TL+
Sbjct: 8 QVVGYKHSGKTTLMEKW 24
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 27.3 bits (60), Expect = 3.8
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 55 GELTAIMGPSGAGKSTL 71
I G + GKS L
Sbjct: 16 KMGVLITGEANIGKSEL 32
Score = 27.3 bits (60), Expect = 3.8
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 197 GELTAIMGPSGAGKSTL 213
I G + GKS L
Sbjct: 16 KMGVLITGEANIGKSEL 32
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 27.1 bits (59), Expect = 4.3
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQLWLLEYSH 233
A SG GK+TLL L R + H
Sbjct: 10 AFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42
Score = 27.1 bits (59), Expect = 4.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 59 AIMGPSGAGKSTLLNIL 75
A SG GK+TLL L
Sbjct: 10 AFAAWSGTGKTTLLKKL 26
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 26.9 bits (59), Expect = 4.4
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 201 AIMGPSGAGKSTLLNIL---TGYKILRQLWLLE 230
+ G G GK+TL L +G K + L
Sbjct: 15 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAR 47
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 27.5 bits (61), Expect = 4.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 50 GRLRSGELTAIMGPSGAGKSTL 71
G + S +T G GK+ L
Sbjct: 117 GGIESMAITEAFGEFRTGKTQL 138
Score = 27.5 bits (61), Expect = 4.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 192 GRLRSGELTAIMGPSGAGKSTL 213
G + S +T G GK+ L
Sbjct: 117 GGIESMAITEAFGEFRTGKTQL 138
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 27.3 bits (61), Expect = 4.7
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 9/39 (23%)
Query: 199 LTAIMGPSGAGKSTLLNILTGYKILRQLWLL-EYSHKDL 236
+TAI+GP+G+GKS NI+ K W+ E S K+L
Sbjct: 26 VTAIVGPNGSGKS---NIIDAIK-----WVFGEQSKKEL 56
Score = 27.3 bits (61), Expect = 4.9
Identities = 11/19 (57%), Positives = 16/19 (84%), Gaps = 3/19 (15%)
Query: 57 LTAIMGPSGAGKSTLLNIL 75
+TAI+GP+G+GKS NI+
Sbjct: 26 VTAIVGPNGSGKS---NII 41
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 27.4 bits (60), Expect = 4.8
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 59 AIMGPSGAGKSTLLNIL 75
+ G G GKST ++
Sbjct: 11 YLDGVYGIGKSTTGRVM 27
Score = 27.4 bits (60), Expect = 4.8
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 201 AIMGPSGAGKSTLLNIL 217
+ G G GKST ++
Sbjct: 11 YLDGVYGIGKSTTGRVM 27
>3kta_A Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xex_A* 1xew_X*
Length = 182
Score = 26.8 bits (60), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 57 LTAIMGPSGAGKSTLLNI 74
TAI+G +G+GKS NI
Sbjct: 28 FTAIVGANGSGKS---NI 42
Score = 26.8 bits (60), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 199 LTAIMGPSGAGKSTLLNI 216
TAI+G +G+GKS NI
Sbjct: 28 FTAIVGANGSGKS---NI 42
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain,
TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma
parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Length = 223
Score = 26.8 bits (60), Expect = 5.0
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 195 RSGELTAIMGPSGAGKST-LLNILTGYKILRQ 225
+ G + I GP AGK+ L+ L +
Sbjct: 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADV 41
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 26.8 bits (60), Expect = 5.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 60 IMGPSGAGKSTLL 72
MG G+GK+ L+
Sbjct: 43 FMGAIGSGKTLLI 55
Score = 26.8 bits (60), Expect = 5.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 202 IMGPSGAGKSTLL 214
MG G+GK+ L+
Sbjct: 43 FMGAIGSGKTLLI 55
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 26.9 bits (59), Expect = 5.6
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 60 IMGPSGAGKSTLLNILTGYK 79
++G +G GKS N + +
Sbjct: 27 LVGKTGTGKSAAGNSILRKQ 46
Score = 26.9 bits (59), Expect = 5.6
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 202 IMGPSGAGKSTLLNILTGYK 221
++G +G GKS N + +
Sbjct: 27 LVGKTGTGKSAAGNSILRKQ 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 27.3 bits (60), Expect = 5.7
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 194 LRSGELTAIMGPSGAGKST-LLNILT--GYKIL 223
+S ++ + P+G+GKST + GYK+L
Sbjct: 229 PQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVL 261
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 26.8 bits (60), Expect = 5.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 60 IMGPSGAGKSTLL 72
IMG G+GK+ L+
Sbjct: 35 IMGAIGSGKTLLI 47
Score = 26.8 bits (60), Expect = 5.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 202 IMGPSGAGKSTLL 214
IMG G+GK+ L+
Sbjct: 35 IMGAIGSGKTLLI 47
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 26.8 bits (59), Expect = 6.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 57 LTAIMGPSGAGKSTL 71
L +MG +G GKS L
Sbjct: 42 LLVLMGATGTGKSRL 56
Score = 26.8 bits (59), Expect = 6.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 199 LTAIMGPSGAGKSTL 213
L +MG +G GKS L
Sbjct: 42 LLVLMGATGTGKSRL 56
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A
{Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Length = 184
Score = 26.3 bits (59), Expect = 6.3
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 196 SGELTAIMGPSGAGKST-LLNILTGYKILRQ 225
SG+LT I GP +GK+T LL+ + YK+ ++
Sbjct: 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKK 32
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.1 bits (59), Expect = 6.3
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 60 IMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTV 118
++G SG GKSTL+N + + T H + + S ++++ + LT+
Sbjct: 36 VVGESGLGKSTLIN--SLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 92
Score = 27.1 bits (59), Expect = 6.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 202 IMGPSGAGKSTLLNILTGYKILRQLWLLEYSH 233
++G SG GKSTL+N L + +
Sbjct: 36 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHR 67
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 26.9 bits (60), Expect = 6.6
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 10/40 (25%)
Query: 67 GKSTLLNILTGYKT-----SGT-----EGSITINGHERNL 96
GK+T+ N LTG + G EG + E +
Sbjct: 15 GKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLV 54
Score = 26.1 bits (58), Expect = 10.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 209 GKSTLLNILTGYK 221
GK+T+ N LTG +
Sbjct: 15 GKTTIFNALTGLR 27
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 26.5 bits (58), Expect = 6.6
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 59 AIMGPSGAGKSTL 71
I G SG GKS
Sbjct: 38 LITGDSGVGKSET 50
Score = 26.5 bits (58), Expect = 6.6
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 201 AIMGPSGAGKSTL 213
I G SG GKS
Sbjct: 38 LITGDSGVGKSET 50
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 26.7 bits (60), Expect = 6.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 59 AIMGPSGAGKSTLLNILTG 77
AI+G GKSTL N +
Sbjct: 184 AIVGRPNVGKSTLFNAILN 202
Score = 26.7 bits (60), Expect = 6.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 201 AIMGPSGAGKSTLLNILTG 219
AI+G GKSTL N +
Sbjct: 184 AIVGRPNVGKSTLFNAILN 202
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 26.2 bits (57), Expect = 7.9
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 59 AIMGPSGAGKSTLLNIL 75
I G G GK+++ ++
Sbjct: 14 LITGTPGTGKTSMAEMI 30
Score = 26.2 bits (57), Expect = 7.9
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 201 AIMGPSGAGKSTLLNIL 217
I G G GK+++ ++
Sbjct: 14 LITGTPGTGKTSMAEMI 30
>1tua_A Hypothetical protein APE0754; structural genomics, protein
structure initiative, MCSG, four layers alpha-beta
sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1
d.51.1.1
Length = 191
Score = 26.1 bits (57), Expect = 7.9
Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 1/78 (1%)
Query: 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
+ + + S I+G G + T+ +T + E + I G
Sbjct: 86 DQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEE-MTDTYINVGEYEVAIIGDY 144
Query: 94 RNLSQFRKLSCYIMQDNQ 111
++ + +
Sbjct: 145 ERAMAAKQAIEMLAEGRM 162
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in
complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo
sapiens} PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 26.0 bits (58), Expect = 8.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 62 GPSGAGKSTLLNIL 75
G SGAGK+T+ L
Sbjct: 12 GLSGAGKTTVSMAL 25
Score = 26.0 bits (58), Expect = 8.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 204 GPSGAGKSTLLNIL 217
G SGAGK+T+ L
Sbjct: 12 GLSGAGKTTVSMAL 25
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'-
(2'deoxythymidil))tetraphosphate, transferase; HET: 4TA;
2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Length = 234
Score = 26.3 bits (58), Expect = 8.5
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 195 RSGELTAIMGPSGAGKST-LLNILTGYKILRQ 225
G++ I+GP +GKST L+ + ++I +
Sbjct: 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQY 48
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural
genomics, NPPSFA, national P protein structural and
functional analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 26.0 bits (58), Expect = 8.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 62 GPSGAGKSTLLNIL 75
G G+GK+T+ L
Sbjct: 20 GLPGSGKTTIATRL 33
Score = 26.0 bits (58), Expect = 8.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 204 GPSGAGKSTLLNIL 217
G G+GK+T+ L
Sbjct: 20 GLPGSGKTTIATRL 33
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 26.7 bits (60), Expect = 8.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 59 AIMGPSGAGKSTLLNILTG 77
++G GKS+L+N + G
Sbjct: 179 CLIGRPNVGKSSLVNAMLG 197
Score = 26.7 bits (60), Expect = 8.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 201 AIMGPSGAGKSTLLNILTG 219
++G GKS+L+N + G
Sbjct: 179 CLIGRPNVGKSSLVNAMLG 197
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small
GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga
maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 26.1 bits (58), Expect = 9.1
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 67 GKSTLLNILTGYKT-----SGT-----EGSITINGHERNL 96
GK++L N LTG K G EG T G+ NL
Sbjct: 17 GKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINL 56
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron
uptake, cell inner membrane, cell GTP-binding, ION
transport, membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 26.1 bits (58), Expect = 9.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 66 AGKSTLLNILTG 77
GK+TL N LT
Sbjct: 12 CGKTTLFNALTN 23
Score = 26.1 bits (58), Expect = 9.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 208 AGKSTLLNILTG 219
GK+TL N LT
Sbjct: 12 CGKTTLFNALTN 23
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION
transport, membrane; 1.80A {Escherichia coli} PDB:
3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 26.1 bits (58), Expect = 9.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 66 AGKSTLLNILTG 77
+GK+TL N LTG
Sbjct: 14 SGKTTLFNQLTG 25
Score = 26.1 bits (58), Expect = 9.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 208 AGKSTLLNILTG 219
+GK+TL N LTG
Sbjct: 14 SGKTTLFNQLTG 25
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 26.5 bits (57), Expect = 9.5
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 201 AIMGPSGAGKSTLLNILTGYKILRQLW 227
GP G+GKS + Y L + +
Sbjct: 35 FFSGPQGSGKSFTSIQI--YNHLMEKY 59
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ehrlich chaffeensis; 2.15A
{Ehrlichia chaffeensis}
Length = 223
Score = 26.1 bits (58), Expect = 9.7
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
M + H + G G+GK+T ++L Y
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEY 44
Score = 26.1 bits (58), Expect = 9.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 62 GPSGAGKSTLLNILTGY 78
G G+GK+T ++L Y
Sbjct: 28 GIDGSGKTTQSHLLAEY 44
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation,
transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A*
2wvj_A* 2j87_A*
Length = 195
Score = 26.1 bits (58), Expect = 9.7
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 195 RSGELTAIMGPSGAGKST-LLNILTGYKILRQ 225
G++ I+GP +GKST L+ + ++I +
Sbjct: 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQY 49
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 26.4 bits (58), Expect = 9.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 58 TAIMGPSGAGKSTLLN 73
+ G +G GKS LL
Sbjct: 56 LLVNGATGTGKSVLLR 71
Score = 26.4 bits (58), Expect = 9.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 200 TAIMGPSGAGKSTLLN 215
+ G +G GKS LL
Sbjct: 56 LLVNGATGTGKSVLLR 71
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 26.0 bits (58), Expect = 9.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 62 GPSGAGKSTLLNILTGY 78
GP G+GK+T++N +
Sbjct: 9 GPEGSGKTTVINEVYHR 25
Score = 26.0 bits (58), Expect = 9.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 204 GPSGAGKSTLLNILTGY 220
GP G+GK+T++N +
Sbjct: 9 GPEGSGKTTVINEVYHR 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.127 0.360
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,204,001
Number of extensions: 172313
Number of successful extensions: 1380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1337
Number of HSP's successfully gapped: 504
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.2 bits)