BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3103
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
VHL+G E+ GPVLE + RMR + S + +PIR VA+S+++ N D+A WLG + +
Sbjct: 1055 VHLIGGEN-GPVLEVICSRMRYI--SSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTF 1111
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRK 179
+ RPV L ++GF +Q+ + ++ + I ++S KP ++F +RK
Sbjct: 1112 -NFHPNVRPVPLELHIQGFNISHTQTRL---LSMAKPVYHAITKHSPKKPVIVFVPSRK 1166
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 13/143 (9%)
Query: 50 QLFRSGYLMIL--VHLLGEESRGPVLEAVVCR-MRTVQKSQRASQPIRFVAVSATIPNIY 106
QL R L+IL +HLL ++ RGPVLEA+V R +R ++ +Q + +R + +SAT+PN
Sbjct: 206 QLVR---LIILDEIHLLHDD-RGPVLEALVARAIRNIEMTQ---EDVRLIGLSATLPNYE 258
Query: 107 DIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYS 166
D+A +L D+SFRPV L + G K + FQ + Y+ IM+++
Sbjct: 259 DVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK---IMEHA 315
Query: 167 DNKPTLIFCATRKGVEHTCTILR 189
L+F +RK T +R
Sbjct: 316 GKNQVLVFVHSRKETGKTARAIR 338
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 17 MSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+ + D+ LK+ L + +GY H G+SP +R ++EQLF SG + ++V
Sbjct: 1200 LEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVV 1244
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 24 KLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+LKD+L HHAGM+ DRT++E LF ++ +LV
Sbjct: 372 ELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLV 409
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
VHL+G E+ GPVLE + RMR + S + +PIR VA+S+++ N D+A WLG + +
Sbjct: 1055 VHLIGGEN-GPVLEVICSRMRYI--SSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTF 1111
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRK 179
+ RPV L ++GF +Q+ + ++ + I ++S KP ++F +RK
Sbjct: 1112 -NFHPNVRPVPLELHIQGFNISHTQTRL---LSMAKPVYHAITKHSPKKPVIVFVPSRK 1166
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 13/143 (9%)
Query: 50 QLFRSGYLMIL--VHLLGEESRGPVLEAVVCR-MRTVQKSQRASQPIRFVAVSATIPNIY 106
QL R L+IL +HLL ++ RGPVLEA+V R +R ++ +Q + +R + +SAT+PN
Sbjct: 206 QLVR---LIILDEIHLLHDD-RGPVLEALVARAIRNIEMTQ---EDVRLIGLSATLPNYE 258
Query: 107 DIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYS 166
D+A +L D+SFRPV L + G K + FQ + Y+ IM+++
Sbjct: 259 DVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK---IMEHA 315
Query: 167 DNKPTLIFCATRKGVEHTCTILR 189
L+F +RK T +R
Sbjct: 316 GKNQVLVFVHSRKETGKTARAIR 338
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 17 MSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+ + D+ LK+ L + +GY H G+SP +R ++EQLF SG + ++V
Sbjct: 1200 LEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVV 1244
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 24 KLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+LKD+L HHAGM+ DRT++E LF ++ +LV
Sbjct: 372 ELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLV 409
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 53.5 bits (127), Expect = 8e-08, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 18/131 (13%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HLL E RG LE +V +MR R ++ +R + +SAT PN+ +IA WL Y
Sbjct: 147 IHLLDSEKRGATLEILVTKMR------RMNKALRVIGLSATAPNVTEIAEWL---DADYY 197
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQ--FEMMLSYKLKSIIMQ-YSDNKPTLIFCAT 177
+RPV L V G + + F F K + ++ + ++N L+F +T
Sbjct: 198 VS---DWRPVPL---VEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFEST 251
Query: 178 RKGVEHTCTIL 188
R+G E T L
Sbjct: 252 RRGAEKTAVKL 262
Score = 35.4 bits (80), Expect = 0.027, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 21 MDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
M KL + +R +HHAG+ R ++E FR G + ++V
Sbjct: 287 MSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVV 327
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 47.4 bits (111), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 2 SIQTSPEVR---EIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLM 58
S+ T PE+R E+ D N + KL +R + +HHAG+ ++R ++E+ FR G +
Sbjct: 263 SLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK 322
Query: 59 ILV 61
+V
Sbjct: 323 AVV 325
Score = 46.6 bits (109), Expect = 1e-05, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 25/162 (15%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HL+G RG LE ++ M + K+Q + +SATI N ++A WL
Sbjct: 147 IHLIGSRDRGATLEVILAHM--LGKAQ-------IIGLSATIGNPEELAEWLN------A 191
Query: 121 AQIDDSFRPVKLTKIV--RGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATR 178
I +RPVKL + V +GF T S +F +I K LIF R
Sbjct: 192 ELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI----RKKKGALIFVNMR 247
Query: 179 KGVEHTCTILRQEM-SIQTSPEVR---EIVDKCMSNMMDNKL 216
+ E L +++ S+ T PE+R E+ D N + KL
Sbjct: 248 RKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKL 289
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
VH + ++ RG V E V+ + Q ++F+ +SAT+PN Y+ A W+G K
Sbjct: 156 VHYVNDQDRGVVWEEVIIML---------PQHVKFILLSATVPNTYEFANWIGRTKQKNI 206
Query: 121 AQIDDSFRPVKL 132
I RPV L
Sbjct: 207 YVISTPKRPVPL 218
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 24 KLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
K + +L I HH G+ P + +IE LF G++ +L
Sbjct: 393 KTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVL 429
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 31/135 (22%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+H L + RGPV+E+V T++ +R +A+SATI N IA WLG +P
Sbjct: 154 LHYLNDPERGPVVESV-----TIRAKRR-----NLLALSATISNYKQIAKWLG-AEP--- 199
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQF-----------EMMLSYKLKSIIMQYSDNK 169
+ ++RPV L + V K + F + +++Y L S+ S N
Sbjct: 200 --VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL----SKNG 253
Query: 170 PTLIFCATRKGVEHT 184
L+F +RK E T
Sbjct: 254 QVLVFRNSRKMAEST 268
Score = 35.0 bits (79), Expect = 0.029, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 25 LKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
LK ++ + YHHAG+S R +IE+ FR + ++V
Sbjct: 307 LKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIV 343
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 28 MLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
+LR IG HH+G+ P + +IE LF+ G+L +L
Sbjct: 502 LLRRGIGIHHSGLLPILKEVIEILFQEGFLKVL 534
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWL 112
VH + ++ RG V E + + +R+V +SATIPN + A W+
Sbjct: 299 VHYMRDKERGVVWEETIILL---------PDKVRYVFLSATIPNAMEFAEWI 341
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 28 MLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
+LR IG HH+G+ P + +IE LF+ G+L +L
Sbjct: 404 LLRRGIGIHHSGLLPILKEVIEILFQEGFLKVL 436
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWL 112
VH + ++ RG V E + + +R+V +SATIPN + A W+
Sbjct: 201 VHYMRDKERGVVWEETIILL---------PDKVRYVFLSATIPNAMEFAEWI 243
>pdb|1YZX|A Chain A, Crystal Structure Of Human Kappa Class Glutathione
Transferase
pdb|1YZX|B Chain B, Crystal Structure Of Human Kappa Class Glutathione
Transferase
Length = 226
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 5 TSPEVREIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQ---LFRSGYLMILV 61
++ + + +++K + + N+LK+ ++ Y G+ + Q LF S + +L
Sbjct: 148 SAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTHMLFGSDRMELLA 207
Query: 62 HLLGEESRGPVLEAVVCRM 80
HLLGE+ GP+ AV R+
Sbjct: 208 HLLGEKWMGPIPPAVNARL 226
>pdb|3RPN|A Chain A, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|B Chain B, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|C Chain C, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|D Chain D, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|E Chain E, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|F Chain F, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPP|A Chain A, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Apo Form
pdb|3RPP|B Chain B, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Apo Form
pdb|3RPP|C Chain C, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Apo Form
Length = 234
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 5 TSPEVREIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQ---LFRSGYLMILV 61
++ + + +++K + + N+LK+ ++ Y G+ + Q LF S + +L
Sbjct: 148 SAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTHMLFGSDRMELLA 207
Query: 62 HLLGEESRGPVLEAVVCRM 80
HLLGE+ GP+ AV R+
Sbjct: 208 HLLGEKWMGPIPPAVNARL 226
>pdb|1R4W|A Chain A, Crystal Structure Of Mitochondrial Class Kappa Glutathione
Transferase
pdb|1R4W|B Chain B, Crystal Structure Of Mitochondrial Class Kappa Glutathione
Transferase
pdb|1R4W|C Chain C, Crystal Structure Of Mitochondrial Class Kappa Glutathione
Transferase
pdb|1R4W|D Chain D, Crystal Structure Of Mitochondrial Class Kappa Glutathione
Transferase
Length = 226
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 5 TSPEVREIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSP-----EDRTIIEQLFRSGYLMI 59
+ + + +++K + ++ +KL++ ++ Y G+ + +T + LF S + +
Sbjct: 148 ATAQAQHLLNKISTELVKSKLRETTGAACKYGAFGLPTTVAHVDGKTYM--LFGSDRMEL 205
Query: 60 LVHLLGEESRGPVLEAVVCRM 80
L +LLGE+ GPV + R+
Sbjct: 206 LAYLLGEKWMGPVPPTLNARL 226
>pdb|1WFT|A Chain A, Solution Structure Of C-Terminal Fibronectin Type Iii
Domain Of Mouse 1700129l13rik Protein
Length = 123
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 130 VKLTKIVRGF------PTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEH 183
V+++K V G PT PS + ++ L+ + Q DN L+F G++
Sbjct: 14 VRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIR----TAQMQDNPSQLVFMRIYCGLKT 69
Query: 184 TCTILRQEMS 193
+CT+ +++
Sbjct: 70 SCTVTAGQLA 79
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 156 YKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEMSIQT 196
Y L+ ++ +KPT++F +++KG++ T+ + +I+T
Sbjct: 111 YTLRELVHSLGISKPTIVF-SSKKGLDKVITVQKTVTTIKT 150
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 156 YKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEMSIQT 196
Y L+ ++ +KPT++F +++KG++ T+ + +I+T
Sbjct: 111 YTLRELVHSLGISKPTIVF-SSKKGLDKVITVQKTVTTIKT 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,814,533
Number of Sequences: 62578
Number of extensions: 210593
Number of successful extensions: 577
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 29
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)