BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3103
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 122/182 (67%), Gaps = 9/182 (4%)
Query: 43 EDRTIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTV------QKSQRASQPIRFV 96
+D T++ QL R +L+ VH+L EE+RG LE VV RM+T+ + ++A P+RFV
Sbjct: 266 KDNTLV-QLVRL-FLIDEVHILKEENRGATLEVVVSRMKTIYSLSHLSEDRKAFIPMRFV 323
Query: 97 AVSATIPNIYDIALWLG-FGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLS 155
AVSATIPN+ DIA WL P V ++D+S RPVKL K+V GFP QS F+F++ L+
Sbjct: 324 AVSATIPNVEDIADWLSDENSPGVCMKMDESSRPVKLRKVVLGFPCSTKQSEFKFDLTLN 383
Query: 156 YKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEMSIQTSPEVREIVDKCMSNMMDNK 215
YK+ +II YSD +PTL+FC+TRKGV+ +IL ++ S E ++ + KC +++ D+K
Sbjct: 384 YKIANIIQTYSDGRPTLVFCSTRKGVQQAASILTKDAKFVMSIEHKQRLQKCANSIKDSK 443
Query: 216 LK 217
L+
Sbjct: 444 LR 445
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 6 SPEVREIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
S E ++ + KC ++I D+KL+D+L+ +GYHHAG+ DR +IE F G L +L
Sbjct: 425 SIEHKQRLQKCANSIKDSKLRDVLQYGVGYHHAGVDISDRKVIENSFLIGDLPVL 479
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1
PE=2 SV=2
Length = 1435
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 115/169 (68%), Gaps = 7/169 (4%)
Query: 56 YLMILVHLLGEESRGPVLEAVVCRMRTVQ------KSQRASQPIRFVAVSATIPNIYDIA 109
+L+ VH++ +E+RGP LE VV RM+TVQ K+ + P+RFVAVSATIPN DIA
Sbjct: 408 FLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIA 467
Query: 110 LWLGFG-KPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDN 168
WL G +P V ++D+S RPVKL K+V GFP +Q+ F+F++ L+YK+ S+I YSD
Sbjct: 468 EWLSDGERPAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFKFDLTLNYKIASVIQMYSDQ 527
Query: 169 KPTLIFCATRKGVEHTCTILRQEMSIQTSPEVREIVDKCMSNMMDNKLK 217
KPTL+FCATRKGV+ ++L ++ + E ++ + K ++ D+KL+
Sbjct: 528 KPTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQRLQKYAYSVRDSKLR 576
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 8 EVREIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
E ++ + K ++ D+KL+D+L+ YHHAGM DR ++E F G L +L
Sbjct: 558 EQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVL 610
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 9/125 (7%)
Query: 66 EESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGK--PTVYAQI 123
+E RG LE ++ RM T+ Q IRFVA+SAT+PNI D+ALWL P
Sbjct: 274 KEKRGASLEVILTRMNTM------CQNIRFVALSATVPNIEDLALWLKTNNELPANILSF 327
Query: 124 DDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEH 183
D+S+R V+LTK V G+ ++ FQ + + + KL II +++DN+P LIFC TR
Sbjct: 328 DESYRQVQLTKFVYGYSFN-CKNDFQKDAIYNSKLIEIIEKHADNRPVLIFCPTRASTIS 386
Query: 184 TCTIL 188
T L
Sbjct: 387 TAKFL 391
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 15 KCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
+C N D L + ++ I +HHAG+S EDRT +E+ F +G + IL
Sbjct: 403 RCNHNPSDKILNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINIL 448
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 20/171 (11%)
Query: 57 LMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGK 116
+M +HLL + RGP+LE +V RM + S + QP+R + +S + N YD+A WLG
Sbjct: 1264 IMDEIHLLASD-RGPILEMIVSRMNYI--SSQTKQPVRLLGMSTAVSNAYDMAGWLGVKD 1320
Query: 117 PTVYAQIDDSFRPVKLTKIVRGFPTK----PSQSTFQFEMMLSYKLKSIIMQYSDNKPTL 172
+Y S RPV L + GFP P T + ++ K Q+S +KP L
Sbjct: 1321 HGLY-NFPSSVRPVPLKMYIDGFPDNLAFCPLMKTMNKPVFMAIK------QHSPDKPAL 1373
Query: 173 IFCATRKGVEHTCTILRQEMSIQTSP------EVREIVDKCMSNMMDNKLK 217
IF A+R+ T L ++ +P + E + +S + D+ LK
Sbjct: 1374 IFVASRRQTRLTALDLIHLCGMEDNPRRFLNIDDEEELQYYLSQVTDDTLK 1424
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 61 VHLLGEESRGPVLEAVVCR-MRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTV 119
VHLL E+ RG V+E +V R +R V+ SQ IR + +SAT+PN D+A +LG +
Sbjct: 429 VHLLHED-RGSVIETLVARTLRQVESSQSM---IRIIGLSATLPNFMDVADFLGVNRQIG 484
Query: 120 YAQIDDSFRPVKLTKIVRG 138
D SFRP L + + G
Sbjct: 485 MFYFDQSFRPKPLEQQLLG 503
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 17 MSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+S + D+ LK L+ IG HHAG+ +DR+I QLF+ + IL+
Sbjct: 1415 LSQVTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQILI 1459
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 14 DKCMSNIMDNKLKDM---LRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
DK +++ N+ KDM + G HHAGM+ DR + E++F+ G + +L
Sbjct: 573 DKYSRSLVKNRDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVL 622
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
VHL+G E+ GPVLE + RMR + S + +PIR VA+S+++ N D+A WLG + +
Sbjct: 1456 VHLIGGEN-GPVLEVICSRMRYI--SSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTF 1512
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRK 179
+ RPV L ++GF +Q+ + ++ + I ++S KP ++F +RK
Sbjct: 1513 -NFHPNVRPVPLELHIQGFNISHTQTRL---LSMAKPVYHAITKHSPKKPVIVFVPSRK 1567
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 13/143 (9%)
Query: 50 QLFRSGYLMIL--VHLLGEESRGPVLEAVVCR-MRTVQKSQRASQPIRFVAVSATIPNIY 106
QL R L+IL +HLL ++ RGPVLEA+V R +R ++ +Q + +R + +SAT+PN
Sbjct: 607 QLVR---LIILDEIHLLHDD-RGPVLEALVARAIRNIEMTQ---EDVRLIGLSATLPNYE 659
Query: 107 DIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYS 166
D+A +L D+SFRPV L + G K + FQ + Y+ IM+++
Sbjct: 660 DVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK---IMEHA 716
Query: 167 DNKPTLIFCATRKGVEHTCTILR 189
L+F +RK T +R
Sbjct: 717 GKNQVLVFVHSRKETGKTARAIR 739
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 17 MSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+ + D+ LK+ L + +GY H G+SP +R ++EQLF SG + ++V
Sbjct: 1601 LEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVV 1645
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 24 KLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+LKD+L HHAGM+ DRT++E LF ++ +LV
Sbjct: 773 ELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLV 810
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HLLGE+ RGPVLE +V R + S S+ +R V +S + N D+A WLG G+ ++
Sbjct: 1017 IHLLGED-RGPVLEVIVSRTNFI--SSHTSKTVRVVGLSTALANARDLADWLGIGQVGLF 1073
Query: 121 AQIDDSFRPVKLTKIVRGFPTK---PSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCAT 177
S RPV L ++GFP + P +T ++ + I +S KP LIF ++
Sbjct: 1074 -NFRPSVRPVPLEVHIQGFPGQHYCPRMAT------MNKPVFQAIRTHSPAKPVLIFVSS 1126
Query: 178 RKGVEHTCTILRQEMSIQTSPE 199
R+ T L ++ + P+
Sbjct: 1127 RRQTRLTALDLIAFLATEDDPK 1148
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 57 LMIL--VHLLGEESRGPVLEAVVCR-MRTVQKSQRASQPIRFVAVSATIPNIYDIALWLG 113
L+IL VHLL E RGPVLE++V R +R V+ +Q IR + +SAT+PN D+A +L
Sbjct: 205 LLILDEVHLL-HEDRGPVLESLVARTLRQVESTQSM---IRILGLSATLPNYLDVATFLH 260
Query: 114 FGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLI 173
D FRPV L + G T + Q M + ++ Q ++
Sbjct: 261 VNPFIGLFYFDSRFRPVPLGQSFVGIKT--TNKVQQLHDMEEVCYEKVLKQIKAGHQVMV 318
Query: 174 FCATRKGVEHTCTIL 188
F R T L
Sbjct: 319 FVHARNSTVRTAMSL 333
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 22 DNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+ ++++M G HHAGM +DR+++E +F GYL +LV
Sbjct: 366 NKQMREMFPDGFGIHHAGMLRQDRSLMESMFSRGYLKVLV 405
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 10 REIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
RE+ D ++ I ++ LK L IG HHAG+ DR +E+LF + + +L+
Sbjct: 1156 REMTD-IIATIRESNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLI 1206
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HLL +E RGPVLEA+V R T++ + + +R V +SAT+PN D+A +L
Sbjct: 617 IHLLHDE-RGPVLEALVAR--TIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGL 673
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKG 180
D+S+RPV L + G K + FQ + Y+ M+++ L+F +RK
Sbjct: 674 FYFDNSYRPVSLEQQYIGVTEKKALKRFQVMNEIVYE---KTMEHAGRNQVLVFVHSRKE 730
Query: 181 VEHTCTILR 189
T +R
Sbjct: 731 TGKTARAVR 739
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 65 GEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQID 124
GEE GPVLE V RMR + S + + IR VA+SA++ + D+A WLG P
Sbjct: 1460 GEE--GPVLEIVCSRMRYI--SSQIEKQIRIVALSASLTDARDVAQWLGCN-PNATFNFH 1514
Query: 125 DSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRK 179
S RP+ L ++G+ + + +S + + I++YS +KP ++F ++RK
Sbjct: 1515 PSVRPIPLELHIQGYNVTHNATRI---ATMSKPVYNAILKYSAHKPVIVFVSSRK 1566
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 11 EIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
E++ + + +LK++L HHAGM+ DRT++E LF ++ +LV
Sbjct: 760 EVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLV 810
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 11 EIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
E + + + D LK+ L + Y H G+S D ++EQLF SG + + V
Sbjct: 1594 EDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAV 1644
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HLL ++ RGPVLE++V +RT+++ ++ R V +SAT+PN D+A +L KP
Sbjct: 611 IHLLHDD-RGPVLESIV--VRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRV-KPEHL 666
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKG 180
D+S+RPV L + G K + FQ + Y IM+++ L+F +RK
Sbjct: 667 HFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVY---DKIMEHAGKSQVLVFVHSRKE 723
Query: 181 VEHTCTILR 189
T +R
Sbjct: 724 TAKTAKAIR 732
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 25 LKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
LKD+L HHAGM+ DRT++E LF ++ +L
Sbjct: 767 LKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVL 802
Score = 37.4 bits (85), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 17 MSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+++I D L++ + +G+ H G +P+D I++QLF S + + V
Sbjct: 1600 LADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCV 1644
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 23/147 (15%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HLLGEE RGPVLE +V R + S +P+R V +S + N D+A WL + ++
Sbjct: 1455 IHLLGEE-RGPVLEVIVSRTNFI--SSHTEKPVRIVGLSTALANARDLADWLNIRQMGLF 1511
Query: 121 AQIDDSFRPVKLTKIVRGFPTKP--------SQSTFQFEMMLSYKLKSIIMQYSDNKPTL 172
S RPV L ++GFP + ++ TFQ I +S KP L
Sbjct: 1512 -NFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPTFQ-----------AIRSHSPAKPVL 1559
Query: 173 IFCATRKGVEHTCTILRQEMSIQTSPE 199
IF ++R+ T L ++ + P+
Sbjct: 1560 IFVSSRRQTRLTALELIAFLATEEDPK 1586
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 57 LMIL--VHLLGEESRGPVLEAVVCR-MRTVQKSQRASQPIRFVAVSATIPNIYDIALWLG 113
L+IL VHLL E+ RGPVLE++V R +R V+ +Q IR + +SAT+PN D+A +L
Sbjct: 607 LLILDEVHLLHED-RGPVLESIVARTLRQVESTQSM---IRILGLSATLPNYLDVATFLH 662
Query: 114 FGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLI 173
D FRPV L + G K + Q M +S++ Q ++
Sbjct: 663 VNPCIGLFFFDGRFRPVPLGQTFLGI--KSANKVQQLNNMDEVCYESVLKQVKAGHQVMV 720
Query: 174 FCATRKGVEHTCTIL 188
F R T L
Sbjct: 721 FVHARNATVRTAMSL 735
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 13 VDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
++ + I D+ LK L IG HHAG+ DR +E+LF + + +L+
Sbjct: 1596 MENIIGTIRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLI 1644
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 22 DNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+ +++++ HHAGM +DR ++E LF +G++ +LV
Sbjct: 768 NRQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVLV 807
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HLLGEE RGPVLE +V R + S +P+R V +S + N D+A WL + ++
Sbjct: 1456 IHLLGEE-RGPVLEVIVSRTNFI--SSHTEKPVRIVGLSTALANARDLADWLNIKQMGLF 1512
Query: 121 AQIDDSFRPVKLTKIVRGFPTK---PSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCAT 177
S RPV L ++GFP + P ++ ++ I +S KP LIF ++
Sbjct: 1513 -NFRPSVRPVPLEVHIQGFPGQHYCPRMAS------MNKPAFQAIRSHSPAKPVLIFVSS 1565
Query: 178 RKGVEHTCTILRQEMSIQTSPEV-----REIVDKCMSNMMDNKLK 217
R+ T L ++ + P+ + +D + + D+ LK
Sbjct: 1566 RRQTRLTALELIAFLATEEDPKQWLNMDEQEMDNIIGTVRDSNLK 1610
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 57 LMIL--VHLLGEESRGPVLEAVVCR-MRTVQKSQRASQPIRFVAVSATIPNIYDIALWLG 113
L+IL VHLL E+ RGPVLE++V R +R V+ +Q IR + +SAT+PN D+A +L
Sbjct: 608 LLILDEVHLLHED-RGPVLESIVARTLRQVESTQSM---IRILGLSATLPNYLDVATFLH 663
Query: 114 FGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLI 173
D FRPV L + G K + Q M +S++ Q ++
Sbjct: 664 VNPYIGLFYFDGRFRPVPLGQTFLGI--KSTNKMQQLNNMDEVCYESVLKQVKAGHQVMV 721
Query: 174 FCATRKGVEHTCTIL 188
F R T L
Sbjct: 722 FVHARNATVRTAMSL 736
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 13 VDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+D + + D+ LK L IG HHAG+ DR +E+LF + + +L+
Sbjct: 1597 MDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLI 1645
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 22 DNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+ +++++ HHAGM +DR ++E LF +G++ +LV
Sbjct: 769 NKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLV 808
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HLLGEE RGPVLE +V R + S +P+R V +S + N D+A WL + ++
Sbjct: 1455 IHLLGEE-RGPVLEVIVSRTNFI--SSHTEKPVRIVGLSTALANARDLADWLNIKQMGLF 1511
Query: 121 AQIDDSFRPVKLTKIVRGFPTK---PSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCAT 177
S RPV L ++GFP + P ++ ++ I +S KP LIF ++
Sbjct: 1512 -NFRPSVRPVPLEVHIQGFPGQHYCPRMAS------MNKPAFQAIRSHSPAKPVLIFVSS 1564
Query: 178 RKGVEHTCTILRQEMSIQTSPE 199
R+ T L ++ + P+
Sbjct: 1565 RRQTRLTALELIAFLATEEDPK 1586
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 57 LMIL--VHLLGEESRGPVLEAVVCR-MRTVQKSQRASQPIRFVAVSATIPNIYDIALWLG 113
L+IL VHLL E+ RGPVLE++V R +R V+ +Q IR + +SAT+PN D+A +L
Sbjct: 607 LLILDEVHLLHED-RGPVLESIVARTLRQVESTQSM---IRILGLSATLPNYLDVATFLH 662
Query: 114 FGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLI 173
D FRPV L + G K + Q M ++++ Q ++
Sbjct: 663 VNPYIGLFFFDGRFRPVPLGQTFLGI--KCANKMQQLNNMDEVCYENVLKQVKAGHQVMV 720
Query: 174 FCATRKGVEHTCTIL 188
F R T L
Sbjct: 721 FVHARNATVRTAMSL 735
Score = 38.1 bits (87), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 12 IVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+ +K + + +++++ HHAGM +DR ++E LF +G++ +LV
Sbjct: 758 LAEKQVQRSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLV 807
Score = 37.7 bits (86), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 13 VDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
++ ++ + D+ LK L IG HHAG+ DR +E+LF + + +L+
Sbjct: 1596 MENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLI 1644
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 23/147 (15%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HLLG+E RGPVLE +V R + S +P+R V +S + N D+A WL + ++
Sbjct: 1464 IHLLGDE-RGPVLEVIVSRTNFI--SSHTEKPVRVVGLSTALANARDLADWLNINQMGLF 1520
Query: 121 AQIDDSFRPVKLTKIVRGFP--------TKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTL 172
S RPV L ++GFP + ++ FQ I +S KP L
Sbjct: 1521 -NFRPSVRPVPLEVHIQGFPGQHYCPRMARMNKPAFQ-----------AIRSHSPAKPVL 1568
Query: 173 IFCATRKGVEHTCTILRQEMSIQTSPE 199
IF ++R+ T L ++ + P+
Sbjct: 1569 IFVSSRRQTRLTSLDLIAFLATEDDPK 1595
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 57 LMIL--VHLLGEESRGPVLEAVVCR-MRTVQKSQRASQPIRFVAVSATIPNIYDIALWLG 113
L+IL VHLL E+ RGPVLE++V R +R V+ +Q IR + +SAT+PN D+A +L
Sbjct: 616 LLILDEVHLLHED-RGPVLESIVARTLRQVESTQSM---IRILGLSATLPNYLDVATFLH 671
Query: 114 FGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLI 173
D FRPV L + G T + Q M ++++ Q ++
Sbjct: 672 VNPYIGLFYFDSRFRPVPLGQTFIGIKT--TNKVQQLNHMDEVCYENVLKQIMAGHQVMV 729
Query: 174 FCATRKGVEHTCTILRQE 191
F R T LR++
Sbjct: 730 FVHARNATVRTAMALREK 747
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 22 DNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+ +L+++ HHAGM +DR+++E LF +G++ +LV
Sbjct: 777 NKQLRELFPDGFSIHHAGMLRQDRSLVENLFSNGHIKVLV 816
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 10 REIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
RE+ D + + D+ LK L IG HHAG+ DR +E+LF + + +L+
Sbjct: 1603 REMND-IIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLI 1653
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HL+GE RGP+LE +V RM+ + S++ IR V +S + N D++ W+G + ++
Sbjct: 1455 IHLIGE-LRGPILEVIVSRMKLI--SKQTGVNIRVVGLSTAMANAIDLSEWMGIDRVGLF 1511
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKG 180
S RPV + ++GF K Q S+ + I YS KP LIF ++R+
Sbjct: 1512 -NFRPSCRPVPIEVHIQGFQGKNYCPRMQTMNKPSF---AAIATYSPKKPVLIFVSSRRQ 1567
Query: 181 VEHTCTILRQEMSIQTSP 198
T L + + P
Sbjct: 1568 TRLTALDLISYLVVDNDP 1585
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 61 VHLLGEESRGPVLEAVVCR-MRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTV 119
+HLL EE RGPVLE +V R +R V+ +Q IR V +SAT+PN D+A ++
Sbjct: 619 IHLLHEE-RGPVLECIVARTLRQVETTQEM---IRIVGLSATLPNYKDVARFIRAPASGT 674
Query: 120 YAQIDDSFRPVKLTKIVRG 138
+ D S+RPV LT+ G
Sbjct: 675 HF-FDSSYRPVPLTQNFIG 692
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 13 VDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
++ ++ + D L+ L IG HHAG++ DRTI+E LF + IL+
Sbjct: 1595 IEPTLARVKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQILI 1643
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 15 KCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
K + +++ + + I HHAG+ DR ++E+ F +G + +LV
Sbjct: 763 KEFEKVKSKEIRSLFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLV 809
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HLLGEE RGPVLE +V R + S +P+R V +S + N D+A WL + ++
Sbjct: 1456 IHLLGEE-RGPVLEVIVSRTNFI--SSHTEKPVRIVGLSTALANARDLADWLNIKQMGLF 1512
Query: 121 AQIDDSFRPVKLTKIVRGFP 140
S RPV L ++GFP
Sbjct: 1513 -NFRPSVRPVPLEVHIQGFP 1531
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 57 LMIL--VHLLGEESRGPVLEAVVCR-MRTVQKSQRASQPIRFVAVSATIPNIYDIALWLG 113
L+IL VHLL E+ RGPVLE++V R +R V+ +Q IR + +SAT+PN D+A +L
Sbjct: 608 LLILDEVHLLHED-RGPVLESIVARTLRQVESTQSM---IRILGLSATLPNYLDVATFLH 663
Query: 114 FGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLI 173
D FRPV L + G K + Q M +S++ Q ++
Sbjct: 664 VNPYIGLFYFDGRFRPVPLGQTFLGI--KSANKMQQLNNMDEVCYESVLKQVKAGHQVMV 721
Query: 174 FCATRKGVEHTCTIL 188
F R T L
Sbjct: 722 FVHARNATVRTAMSL 736
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 22 DNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+ +++++ HHAGM +DR ++E LF +G++ +LV
Sbjct: 769 NKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLV 808
Score = 37.7 bits (86), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 13 VDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
++ ++ + D+ LK L IG HHAG+ DR +E+LF + + +L+
Sbjct: 1596 MENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLI 1644
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
VHLL +E RGPVLE++V R+ + + + +R V +SAT+PN D+A +L
Sbjct: 656 VHLLHDE-RGPVLESIVARI--FRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGL 712
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKG 180
D ++RP L + G K Q Y+ +MQ++ LIF +RK
Sbjct: 713 FYFDSTYRPCPLKQEFIGITEKTPFKRMQTTNEACYEK---VMQHAGKNQVLIFVHSRKE 769
Query: 181 VEHTCTILR----QEMSI----QTSPEVREIVDKCMSNMMDNKLK 217
T +R +E +I ++ REI+ + D LK
Sbjct: 770 TAKTARFIRDKALEEETIGHLLRSDAASREILRAEADSTSDENLK 814
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%)
Query: 10 REIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
REI+ + D LKD+L HHAGM EDR E LF G + +LV
Sbjct: 798 REILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLV 849
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HLL ++ RGPVLE++V R T S+ + R + +SAT+PN D+ +L K ++
Sbjct: 636 IHLLHDD-RGPVLESIVAR--TFWASKYGQEYPRIIGLSATLPNYEDVGRFLRVPKEGLF 692
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKG 180
D SFRP L++ G K S + + M + ++ ++ ++F +RK
Sbjct: 693 -YFDSSFRPCPLSQQFCGI--KERNSLKKLKAMNDACYEKVLESINEGNQIIVFVHSRKE 749
Query: 181 VEHTCTILRQEMS 193
T T L+ + +
Sbjct: 750 TSRTATWLKNKFA 762
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 10 REIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
++I+ +N++D L+ ++ S IG HHAG++ DR++ E LF G L +LV
Sbjct: 778 KQILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLV 829
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
H + + G V E ++ RM + + + + IRFV +S + N D W G K +Y
Sbjct: 1476 AHEISQGVYGAVYETLISRMIFI--ATQLEKKIRFVCLSNCLANARDFGEWAGMTKSNIY 1533
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 57 LMIL--VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGF 114
L+IL +HLLG + RGPVLE +V RM V + + ++ +R + +S + N D+A WL
Sbjct: 1257 LIILDEIHLLGSD-RGPVLEMIVSRMNYV--ASQTNKKVRVLGLSTAVANANDLANWLNI 1313
Query: 115 GKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIF 174
S RPV L + GFP + M ++ I +S +P LIF
Sbjct: 1314 RDGLF--NFRHSVRPVPLEIYIDGFPGRAYCPRM---MSMNKPAFQAIKTHSPTQPVLIF 1368
Query: 175 CATRKGVEHTCTILRQEMSIQTSP 198
++R+ T L ++ +P
Sbjct: 1369 VSSRRQTRLTAKDLIAFCGLEDNP 1392
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 61 VHLLGEESRGPVLEAVVCR-MRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTV 119
VH+L +E RG V+E++V R R V+ SQ Q IR V +SAT+PN D+A +LG +
Sbjct: 423 VHMLHDE-RGAVIESLVARTQRLVETSQ---QMIRIVGLSATLPNYLDVADFLGVNRYKG 478
Query: 120 YAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRK 179
+FRP + + G P + K+ +I + +IF +RK
Sbjct: 479 LFYFSSAFRPCPIEQHFIGAKGSPKIVNSNIDEACFDKVLKLIQE---GHQVMIFVHSRK 535
Query: 180 GVEHTCTILRQEM 192
++ LR++
Sbjct: 536 ETINSAKKLREQF 548
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 22 DNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
+ +LK++ + S+G H+AGM DR + E+LF G L IL
Sbjct: 577 NKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGILKIL 615
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 11 EIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
E ++ +S + D LK L I HHAG++ DR I E+LF + + IL+
Sbjct: 1401 EELEMIVSEVEDKSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQILI 1451
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 29/166 (17%)
Query: 57 LMIL--VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGF 114
LM++ +H++G+E RGP LE V+ R V R +A+SAT+ N +IA WL
Sbjct: 138 LMVIDEIHMIGDEYRGPTLETVITTARYVNPET------RIIALSATVSNASEIAEWLNA 191
Query: 115 GKPTVYAQIDDSFRPVKLTKIV----RGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKP 170
+ I SFRPV L + R F ++S +++ + D
Sbjct: 192 ------SLIKSSFRPVPLKVGILYRNRLFLDGDARSDVDINLLVKETV-------DDGGQ 238
Query: 171 TLIFCATRKGVEHTCTILRQEM----SIQTSPEVREIVDKCMSNMM 212
LIF ++RK E L Q ++ S E + D ++ M+
Sbjct: 239 VLIFVSSRKRAEDMAKNLSQLFDPINDLKVSSEDANVYDDLLNEML 284
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 18 SNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+N+ D+ L +ML + +HHAG+S E R+ IE+ FR L ++V
Sbjct: 273 ANVYDDLLNEMLPHGVSFHHAGLSNEQRSFIEKAFRHRKLKVIV 316
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 22/151 (14%)
Query: 62 HLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYA 121
H++GE +RGPV+E+ + R RT+ S +R VA+SAT+ N+ +IA WL
Sbjct: 136 HMIGEYTRGPVIESAITRARTLNPS------VRIVALSATLSNMDEIAGWLD------AR 183
Query: 122 QIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGV 181
++ +RPV L + V F LK + D TL F +TR+
Sbjct: 184 VVEHDYRPVPLHREVL------DTEMFGVREKNDVVLKVLERSLEDGSQTLAFVSTRRFT 237
Query: 182 EHTCTILRQEMSIQTSPEV----REIVDKCM 208
E + L ++S + ++ RE+ K +
Sbjct: 238 ESLASHLADKISGKIPDDMVESFREVAGKVL 268
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 24 KLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
KL + L + I +HHAG+ R IIE FR G ++++
Sbjct: 284 KLAECLEAGIAFHHAGLFNRQREIIEDEFRDGNILMI 320
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 17/162 (10%)
Query: 61 VHLLGEESRGPVLEAVVCR-MRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTV 119
+HLL +E RGPVLE +V R +R ++ +Q Q +R V +SAT+PN D+A +L V
Sbjct: 689 IHLLHDE-RGPVLECIVARTLRMIESTQ---QMVRLVGLSATLPNYEDVATFLRVEPDGV 744
Query: 120 YAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRK 179
+ D S+RP+ L + G + + Q + + + D++ LIF +R+
Sbjct: 745 FY-FDSSYRPIPLEQQYIGISDRGIK---QLQRCNDITFTKVSERVGDHQ-ILIFVHSRR 799
Query: 180 GVEHTCTILR----QEMSIQ---TSPEVREIVDKCMSNMMDN 214
T LR ++ SI P REI+ S + N
Sbjct: 800 ETAKTGKDLRDRAVEDQSIDRYIRDPASREILRATASKQIQN 841
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HL+G E GP +E VV RMR + S + +R +A+S++I N D+ LW+G T Y
Sbjct: 1528 LHLIGGE-YGPTMEIVVSRMRYI--STQTGNALRVIALSSSIANARDLVLWIGATPQTCY 1584
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRK 179
+ RP+ + ++GF F M+ K + + N+ +++F TRK
Sbjct: 1585 -NFHPNVRPIPVEYQIQGFEF----PHFNARMLAMTKPTVYEVAKNKNQQSIVFVPTRK 1638
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 7 PEVREIVDKCMS-NIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
P REI+ S I + +LKD+L IG HHAG+S DR+++E LF + +L+
Sbjct: 825 PASREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLI 880
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 25 LKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQ 84
LK L+ + ++H G++ +R ++E LFRSG + +L+ S +L+ V ++ +
Sbjct: 1682 LKQSLQMGVAFYHDGLTERERRVVEILFRSGSIRVLI---ATHSVAWLLDNVFAQLVVIM 1738
Query: 85 KSQ-RASQPIRFV 96
+Q + IR++
Sbjct: 1739 GTQLYQGKDIRYI 1751
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 35/169 (20%)
Query: 57 LMIL--VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGF 114
L++L +H +G+ESRGP LE V R V +R +A+SAT+ N ++A WL
Sbjct: 138 LLVLDEIHTIGDESRGPTLETVASIARYVNPD------VRILALSATVSNAMELASWLD- 190
Query: 115 GKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKS-------IIMQYSD 167
+ I FRPV L + ++ ++ L K +S I D
Sbjct: 191 -----ASLIKSDFRPVPLKTGI----------LYRDQLYLDGKRRSGVSINQIIRETVED 235
Query: 168 NKPTLIFCATRKGVEHTCTILRQ----EMSIQTSPEVREIVDKCMSNMM 212
N L+F ++RK E T L Q + +I+ S + + D ++ ++
Sbjct: 236 NGQVLMFVSSRKKAEDTARDLAQIFGSDANIKISSDETNVYDDMLNEIL 284
Score = 39.7 bits (91), Expect = 0.015, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 18 SNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
+N+ D+ L ++L + +HHAG+S + R IE+ FR+ + ++V
Sbjct: 273 TNVYDDMLNEILPRGVAFHHAGLSNDQRAFIEREFRARRIKVIV 316
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 5 TSPEVREIVDKCMSNIMDN----KLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
T PE R + ++ +S+I DN KLK L+ + +HHAG+S +RT+IE FR+G + ++
Sbjct: 267 TKPETRRL-EELISSIEDNPTTEKLKRALKGGVAFHHAGLSRAERTLIEDAFRNGLIKVI 325
Score = 39.7 bits (91), Expect = 0.015, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 42/167 (25%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
VHL+G RG LE ++ M + K+Q +A+SAT+ N ++A WL
Sbjct: 147 VHLIGSYDRGATLEMILTHM--LGKAQ-------ILALSATVGNAEELAEWLD------A 191
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDN------------ 168
+ + +RPV+L K V F + + I Y +N
Sbjct: 192 SLVVSDWRPVELRKGV-------------FHLGQLFWEDGKIDHYPENWESLVLDAVKKG 238
Query: 169 KPTLIFCATRKGVEHTCTILRQEMS-IQTSPEVREIVDKCMSNMMDN 214
K L+F TR+ E L ++S + T PE R + ++ +S++ DN
Sbjct: 239 KQALVFVNTRRSAEKEAISLSSKVSKLLTKPETRRL-EELISSIEDN 284
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 14/73 (19%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQ-KSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTV 119
+H LG+ RGPVLE++V ++R + K+Q F+ +SAT+ N ++A WLG
Sbjct: 145 IHYLGDPRRGPVLESIVAKLRHLGLKTQ-------FIGLSATVGNAGEVAAWLG------ 191
Query: 120 YAQIDDSFRPVKL 132
++ S+RPV L
Sbjct: 192 ARLVESSWRPVPL 204
Score = 38.1 bits (87), Expect = 0.046, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 11 EIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
E++ S I+ +L D++ + +H+AG+ E R ++E FR G L ++V
Sbjct: 282 EVLKASSSKIIGRELADLVARGVAFHNAGLELEVRRLVEDGFRRGLLKVVV 332
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 34/177 (19%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+H++GE SRG +LE T+ K S+ + + +SAT+ N+ D+ +L K Y
Sbjct: 424 LHMIGEGSRGAILEM------TLAKVLYTSKTTQIIGMSATLNNVEDLQAFL---KAEYY 474
Query: 121 AQIDDSFRPVKLTKIVRGFPT-----KPSQSTFQFEMMLSYK------------LKSIIM 163
FRPV+L + ++ T + F +LSYK L +++
Sbjct: 475 TS---QFRPVELKEFLKVNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALVT 531
Query: 164 QYSDNKPTLIFCATRKGVEHT----CTILRQEMSIQTSPEVREIVDKCMSNMMDNKL 216
+ N L+FC ++K E+ C L ++ E E++ K + N+ + K+
Sbjct: 532 EVIPNYSCLVFCPSKKNCENVAEMLCKFLSKDYLNHREKEKCEVI-KSLRNIGNGKV 587
Score = 37.4 bits (85), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 13 VDKCMSNIMDNKLKDMLRSS----IGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
V K + NI + K+ +L+ + I YHH+G++ E+R ++E+ + +G L +L
Sbjct: 575 VIKSLRNIGNGKVCPVLKRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLT 627
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 2 SIQTSPEVR---EIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLM 58
S+ T PE+R E+ D N + KL +R + +HHAG+ ++R ++E+ FR G +
Sbjct: 263 SLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK 322
Query: 59 ILV 61
+V
Sbjct: 323 AVV 325
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 25/162 (15%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HL+G RG LE ++ M + K+Q + +SATI N ++A WL
Sbjct: 147 IHLIGSRDRGATLEVILAHM--LGKAQ-------IIGLSATIGNPEELAEWLN------A 191
Query: 121 AQIDDSFRPVKLTKIV--RGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATR 178
I +RPVKL + V +GF T S +F +I K LIF R
Sbjct: 192 ELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI----RKKKGALIFVNMR 247
Query: 179 KGVEHTCTILRQEM-SIQTSPEVR---EIVDKCMSNMMDNKL 216
+ E L +++ S+ T PE+R E+ D N + KL
Sbjct: 248 RKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKL 289
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
VHL+ +E RGP LE + ++R R + ++ VA+SAT+ N ++A WL
Sbjct: 147 VHLVDDEHRGPTLEVTLAKLR------RVNPNLQVVALSATVGNAGEMAEWLD------A 194
Query: 121 AQIDDSFRPVKLTKIV 136
+D S+RP++L K V
Sbjct: 195 ELVDSSWRPIELRKGV 210
Score = 33.9 bits (76), Expect = 0.89, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 8 EVREIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFR 53
E+R + D S+ L D + +HHAG S E R+++E FR
Sbjct: 288 EIRAVSDTETSD----DLADCVEQGAAFHHAGCSSEHRSLVEDAFR 329
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 12/76 (15%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+H + + RGP+LE++V RM ++ + V +SAT+PN +IA W+G GK
Sbjct: 148 IHSVSDPKRGPILESIVSRMLA------SAGEAQLVGLSATVPNAGEIAEWIG-GKI--- 197
Query: 121 AQIDDSFRPVKLTKIV 136
++ S+RPV L + V
Sbjct: 198 --VESSWRPVPLREYV 211
Score = 37.0 bits (84), Expect = 0.10, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 24 KLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
+L ++ + I YHHAG+ P R +E+ FR+G + ++
Sbjct: 299 ELASLIAAGIAYHHAGLPPSLRKTVEEAFRAGAVKVV 335
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 24/150 (16%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRA---------SQPIRFVAVSATIPNIYDIALW 111
+H+LG+ RG +LE ++ ++ + + + S ++ V +SAT+PN+ +A W
Sbjct: 218 LHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASW 277
Query: 112 LGFGKPTVYAQIDDSFRPVKLTKIVR-GFPTKPSQSTF--QFEMMLSYKLKS---IIMQY 165
L +Y FRPV L + V+ G S +FE ML K + + Y
Sbjct: 278 L---NAELY---HTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCY 331
Query: 166 S---DNKPTLIFCATRKGVEHTCTILRQEM 192
DN L+FC ++K E I+ +E
Sbjct: 332 ETICDNHSVLLFCPSKKWCEKLADIIAREF 361
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 8 EVREIVDKC--MSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
E+ E++D+ + + +D+ L+ + + +HHAG++ E+R IIE FR G + +L
Sbjct: 386 ELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLA 441
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
VHL+ + RGP LE + ++R R + ++ VA+SATI N +A WL G
Sbjct: 147 VHLVDDGERGPTLEVTLAKLR------RLNPDLQTVALSATIGNAEALATWLDAG----- 195
Query: 121 AQIDDSFRPVKLTKIVR-GFPTKPSQSTFQ-FEMMLSYKLKSIIMQ--YSDNKPTLIFCA 176
+D +RP+ L K V G + Q + + K + I++ D+ TL+F
Sbjct: 196 -LVDSDWRPIDLQKGVHYGQALHLEDGSQQRLSVQNNEKQTAAIVRDTLEDDGSTLVFVN 254
Query: 177 TRKGVEHTCTILRQEMSIQTSPEVRE 202
+R+ E L + S E R+
Sbjct: 255 SRRNAEAAAGRLANTVRPHLSTEERD 280
Score = 31.6 bits (70), Expect = 4.7, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 8 EVREIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFR 53
E+R++ D S+ L D + +HHAG+S R ++E FR
Sbjct: 288 EIRDVSDTETSD----DLADAVADGAAFHHAGLSRGHRELVEDAFR 329
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 34/177 (19%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+H++GE SRG LE T+ K S+ + + +SAT+ N+ D+ +L + Y
Sbjct: 465 LHMIGEGSRGATLEM------TLAKILYTSKTTQIIGMSATLNNVEDLQKFL---QAEYY 515
Query: 121 AQIDDSFRPVKLTKIVRGFPT-----KPSQSTFQFEMMLSYK------------LKSIIM 163
FRPV+L + ++ T +++ F +L+YK L +++
Sbjct: 516 TS---QFRPVELKEYLKINDTIYEVDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVT 572
Query: 164 QYSDNKPTLIFCATRKGVEHT----CTILRQEMSIQTSPEVREIVDKCMSNMMDNKL 216
+ N L+FC ++K E+ C L +E E E++ K + N+ + L
Sbjct: 573 EVIPNYSCLVFCPSKKNCENVAEMICKFLSKEYLKHKEKEKCEVI-KNLKNIGNGNL 628
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 13 VDKCMSNIMDNKLKDMLRSSI----GYHHAGMSPEDRTIIEQLFRSGYLMILV 61
V K + NI + L +L+ +I YHH+G++ ++R ++E+ + +G L +
Sbjct: 616 VIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFT 668
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 31/135 (22%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+H L + RGPV+E+V T++ +R +A+SATI N IA WLG +P
Sbjct: 147 LHYLNDPERGPVVESV-----TIRAKRR-----NLLALSATISNYKQIAKWLG-AEP--- 192
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQF-----------EMMLSYKLKSIIMQYSDNK 169
+ ++RPV L + V K + T F + +++Y L S+ S N
Sbjct: 193 --VATNWRPVPLMEGVMYPERKKKEYTILFRDNTARKVHGDDAIIAYTLDSL----SKNG 246
Query: 170 PTLIFCATRKGVEHT 184
L+F +RK E T
Sbjct: 247 QVLVFRNSRKMAEST 261
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 25 LKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
LK ++ + YHHAG+S R IIE+ FR + ++V
Sbjct: 300 LKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIV 336
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 8 EVREIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
E+RE+ + N + KL L S + +HHAG+ ++R ++E FR G + ++V
Sbjct: 272 ELRELAESLEENPTNEKLAKALLSGVAFHHAGLGRDERVLVEDNFRKGLIKVVV 325
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 31/165 (18%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HL+G RG LE ++ +M + ++Q + +SATI N ++A WL
Sbjct: 147 IHLIGSRDRGATLEFIITQM--LGRAQ-------IIGLSATIGNPEELAEWLN------A 191
Query: 121 AQIDDSFRPVKLTKIV--RGF---PTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFC 175
I +RPVKL K V +GF S+ +E ++ +K K L+F
Sbjct: 192 KLIRSDWRPVKLRKGVFYQGFVFWEDGGSERYNSWEELVYDAVKK-------GKGALVFV 244
Query: 176 ATRKGVEHTCTILRQE----MSIQTSPEVREIVDKCMSNMMDNKL 216
R+ E T L ++ + + E+RE+ + N + KL
Sbjct: 245 NMRRKAEKTALELAKKVKNYLDRKELRELRELAESLEENPTNEKL 289
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
VH + ++ RG V E V+ + Q ++F+ +SAT+PN Y+ A W+G K
Sbjct: 446 VHYVNDQDRGVVWEEVIIML---------PQHVKFILLSATVPNTYEFANWIGRTKQKNI 496
Query: 121 AQIDDSFRPVKL 132
I RPV L
Sbjct: 497 YVISTPKRPVPL 508
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 24 KLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
K + +L I HH G+ P + +IE LF G++ +L
Sbjct: 683 KTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVL 719
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 8 EVREIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
E++E+ + N + KL L+ + +HHAG+ E+R ++E+ F+ G + ++V
Sbjct: 272 ELKELAESLEENPTNEKLAKALQGGVAFHHAGLGREERVLVEENFKKGLIKVVV 325
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 22/146 (15%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HL+G RG LE ++ +M + ++Q + +SATI N ++A WL
Sbjct: 147 IHLIGSRDRGATLEFIITQM--LNRAQ-------IIGLSATIGNPEELAEWLN------A 191
Query: 121 AQIDDSFRPVKLTKIV--RGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATR 178
I +RPVKL + V +GF T +F +I +K +L+F R
Sbjct: 192 KLIKSDWRPVKLRRGVFYQGFVFWEDGKTEKFNSWEELVYDAI----KRSKGSLVFVNMR 247
Query: 179 KGVEHTCTILRQEM-SIQTSPEVREI 203
+ E T L +++ + T E+RE+
Sbjct: 248 RKAEKTALELSKKIRNFLTKKELREL 273
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
VHL+ ++ RGP LE + ++R Q+ + ++ VA+SAT+ N ++A WL
Sbjct: 156 VHLVDDDHRGPTLEVTLAKLR-----QQVAD-LQVVALSATVGNAGELAAWLD------A 203
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMML---SYKLKSIIMQYSDNKPTLIFCAT 177
+D +RP++L V + Q E+ + S + +D+ TL+F +
Sbjct: 204 ELVDSDWRPIELRTGVHYGQSLHYDDGTQAELSVGSGSQTAAVVADTLADDGSTLVFVNS 263
Query: 178 RKGVE 182
R+ E
Sbjct: 264 RRNAE 268
Score = 35.0 bits (79), Expect = 0.37, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 6 SPEVREIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFR 53
+ E+R + D S+ +L D + S +HHAG++ E R ++E+ FR
Sbjct: 294 AAEIRGVSDTETSD----ELADAVASGAAFHHAGLAREHRELVEEAFR 337
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
VHL+ ++ RGP LE + ++R Q+ + ++ VA+SAT+ N ++A WL
Sbjct: 156 VHLVDDDHRGPTLEVTLAKLR-----QQVAD-LQVVALSATVGNAGELAAWLD------A 203
Query: 121 AQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMML---SYKLKSIIMQYSDNKPTLIFCAT 177
+D +RP++L V + Q E+ + S + +D+ TL+F +
Sbjct: 204 ELVDSDWRPIELRTGVHYGQSLHYDDGTQAELSVGSGSQTAAVVADTLADDGSTLVFVNS 263
Query: 178 RKGVE 182
R+ E
Sbjct: 264 RRNAE 268
Score = 35.0 bits (79), Expect = 0.37, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 6 SPEVREIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFR 53
+ E+R + D S+ +L D + S +HHAG++ E R ++E+ FR
Sbjct: 294 AAEIRGVSDTETSD----ELADAVASGAAFHHAGLAREHRELVEEAFR 337
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLG 113
+HLL ++RGP LE T+ K R + ++ VA+SAT+ N ++A WLG
Sbjct: 146 IHLLDSKNRGPTLEV------TITKLMRLNPDVQVVALSATVGNAREMADWLG 192
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 25 LKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
L + +R + +HHAG++ R ++E FR + ++
Sbjct: 298 LANCIRKGVAFHHAGLNSNHRKLVENGFRQNLIKVI 333
>sp|Q8IY21|DDX60_HUMAN Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens GN=DDX60
PE=1 SV=3
Length = 1712
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 24 KLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
+LK + IGYHH+ MS +++ ++E LFR GYL ++
Sbjct: 1252 ELKALAERGIGYHHSAMSFKEKQLVEILFRKGYLRVV 1288
>sp|Q09475|YP93_CAEEL Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans GN=C28H8.3
PE=3 SV=2
Length = 1714
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 28 MLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
+ IGYHHAG++ +R +E LFRSG L +L
Sbjct: 1277 LFERGIGYHHAGLNTVERGAVEVLFRSGNLAVL 1309
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 4 QTSPEVREIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
+ + EVRE S I+ +L +++ + +HHAG+ E R +IE+ FR G L +L
Sbjct: 284 KLAEEVRETSS---SRILAEELTGLIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVL 337
Score = 38.9 bits (89), Expect = 0.028, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+H + ++ RGP++E++V ++R + + + + +SATI N ++A WL
Sbjct: 148 IHFINDDERGPIIESIVAKLRMLNLNP------QIIGLSATIGNPEELANWLN------A 195
Query: 121 AQIDDSFRPVKLTKIV--RGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATR 178
+ +RPV L + V +G T + + + + +D L+F ++R
Sbjct: 196 KLVKSDWRPVSLREGVYHKGVVTYVNDGEKRISGQGDSLINLTVDTLNDGGQVLVFSSSR 255
Query: 179 KG 180
+G
Sbjct: 256 QG 257
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 39.3 bits (90), Expect = 0.019, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 18/156 (11%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
VHL+ +RGP LE + ++R + + ++ +A+SATI N +A W+
Sbjct: 151 VHLIDSPNRGPTLEVTLAKLRKINVN------LQILALSATIGNAKALAKWMD------A 198
Query: 121 AQIDDSFRPVKLTKIV---RGFPTKPSQSTFQFEMMLSYKLKSIIMQ-YSDNKPTLIFCA 176
A + +RP L + V R K + T ++ S++ + L+F
Sbjct: 199 ALVQSEWRPTTLKEGVFYGRAITFKKEKRTVNNAG--PDEVNSLVADTLEEGGQCLVFAN 256
Query: 177 TRKGVEHTCTILRQEMSIQTSPEVREIVDKCMSNMM 212
TRK E + + +S + P +E + K +++
Sbjct: 257 TRKSSESIAQKVARSLSKKLQPAEKEQLAKLKQDVL 292
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 1 MSIQTSPEVREIVDKCMSNIMDN-------KLKDMLRSSIGYHHAGMSPEDRTIIEQLFR 53
+S + P +E + K +++ + KL + + + + +HHAG+ E R I+E FR
Sbjct: 272 LSKKLQPAEKEQLAKLKQDVLRHAETDTCEKLAECVGNGVAFHHAGLKGEHRRIVEDGFR 331
Query: 54 SGYLMIL 60
L ++
Sbjct: 332 QNILKVI 338
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 39.3 bits (90), Expect = 0.022, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HL+G+ RG LE ++ +++ + + V +SAT+ N +IA WL
Sbjct: 145 IHLIGDNERGGTLEVILTKLKNINA--------QIVGLSATVGNPEEIANWLN------A 190
Query: 121 AQIDDSFRPVKLTK 134
+ D +RPV+L K
Sbjct: 191 KLVTDEWRPVELKK 204
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 37.7 bits (86), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 28 MLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
+LR IG HH+G+ P + +IE LF+ G+L +L
Sbjct: 467 LLRRGIGIHHSGLLPILKEVIEILFQEGFLKVL 499
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWL 112
VH + ++ RG V E + + +R+V +SATIPN + A W+
Sbjct: 264 VHYMRDKERGVVWEETIILL---------PDKVRYVFLSATIPNAMEFAEWI 306
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 37.7 bits (86), Expect = 0.067, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWL 112
VHL+ RGP LE + ++R + S + +A+SAT+ N ++A+WL
Sbjct: 146 VHLIDSPDRGPTLEVTLAKLRKMNPS------CQILALSATVGNADELAVWL 191
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 22/103 (21%)
Query: 6 SPEVREIVDKCMSNIMDNKLKDM-------LRSSIGYHHAGMSPEDRTIIEQLFRSGYLM 58
S E R + I++N D +RS +HHAG++ R ++E FR+G +
Sbjct: 272 SAEDRNALAGIADEILENSETDTSTNLAVCIRSGTAFHHAGLTTPLRELVEDGFRAGRIK 331
Query: 59 ILVHLLGEESRGPVLEA--------VVCRMRTVQKSQRASQPI 93
++ S P L A V+ R S+ QPI
Sbjct: 332 LI-------SSTPTLAAGLNLPARRVIIRNYRRYSSEDGMQPI 367
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 37.4 bits (85), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HL+ RGP LE V+ +MR+ ++ + +SATI N +A WL
Sbjct: 143 IHLIDSPDRGPTLEMVIAKMRSKNPG------MQLIGLSATIGNPKVLAGWLD------A 190
Query: 121 AQIDDSFRPVKLTKIV 136
+ S+RPV L + V
Sbjct: 191 ELVTSSWRPVDLRQGV 206
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 16 CMSNIMDNKLKDMLRS-------SIGYHHAGMSPEDRTIIEQLFRSGYL 57
C +++ +M+++ +HHAG+S ++R+I+E+ FR L
Sbjct: 275 CAERLLEGTPTEMVKTLAACVAKGAAFHHAGLSRKERSIVEEAFRKNLL 323
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 14/74 (18%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVY 120
+HL+ +E+RG LE ++ +++ ++ + +SATI N ++A WL
Sbjct: 145 IHLINDETRGGTLEILLTKLKEFN--------VQIIGLSATIGNPDELAEWLN------A 190
Query: 121 AQIDDSFRPVKLTK 134
I D +RPV+L K
Sbjct: 191 ELIVDDWRPVELKK 204
>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC694.02 PE=3 SV=1
Length = 1717
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 27 DMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
D L IG HH+G++ R I+E LFR G L +++
Sbjct: 1219 DALYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVI 1253
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 28 MLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMIL 60
+LR IG HH+G+ P + +IE LF+ G L +L
Sbjct: 515 LLRRGIGIHHSGLLPILKEVIEILFQEGLLKVL 547
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 35.8 bits (81), Expect = 0.26, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 61 VHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWL 112
VHL+ RGP LE + ++R R + + +A+SAT+ N ++A WL
Sbjct: 146 VHLIDSPDRGPTLEITLSKLR------RMNPSCQVLALSATVGNADELAAWL 191
Score = 35.0 bits (79), Expect = 0.35, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 22/103 (21%)
Query: 6 SPEVREIVDKCMSNIMDNKLKDM-------LRSSIGYHHAGMSPEDRTIIEQLFRSGYLM 58
S E RE + I++N D+ +RS +HHAG++ R ++E FR G +
Sbjct: 272 SNEDRETLAGIADEIIENSETDVSSVLATCVRSGTAFHHAGLTTPLRELVENGFREGRIK 331
Query: 59 ILVHLLGEESRGPVLEA--------VVCRMRTVQKSQRASQPI 93
I+ S P L A V+ R S QPI
Sbjct: 332 II-------SSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPI 367
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 35.0 bits (79), Expect = 0.35, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
Query: 57 LMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGF-- 114
+M VH L + RGPV E V+ ++ +R V++SAT+ N + W+
Sbjct: 130 VMDEVHFLADRMRGPVWEEVILQL---------PDDVRVVSLSATVSNAEEFGGWIQTVR 180
Query: 115 GKPTVYAQIDDSFRPVKL 132
G TV + D RPV L
Sbjct: 181 GDTTV---VVDEHRPVPL 195
Score = 32.0 bits (71), Expect = 3.7, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 5 TSPEVR----EIVDKCMSNIMDNKL--------KDMLRSSIGYHHAGMSPEDRTIIEQLF 52
TS E R E++D ++ D+ L ++ L + HHAGM P R +E+LF
Sbjct: 300 TSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELF 359
Query: 53 RSG 55
+G
Sbjct: 360 TAG 362
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,303,991
Number of Sequences: 539616
Number of extensions: 2735576
Number of successful extensions: 6560
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6342
Number of HSP's gapped (non-prelim): 158
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)