Query psy3103
Match_columns 217
No_of_seqs 150 out of 1217
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 16:34:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0952|consensus 99.9 2.1E-26 4.6E-31 217.9 13.2 152 35-192 212-373 (1230)
2 KOG0951|consensus 99.9 5.3E-24 1.1E-28 204.2 12.9 170 39-217 416-603 (1674)
3 COG1204 Superfamily II helicas 99.9 1.8E-23 3.9E-28 199.4 9.1 153 39-201 127-286 (766)
4 KOG0948|consensus 99.9 2.5E-22 5.5E-27 185.4 7.3 153 46-210 230-423 (1041)
5 PRK02362 ski2-like helicase; P 99.8 8.9E-21 1.9E-25 181.8 13.1 163 36-211 115-286 (737)
6 COG1202 Superfamily II helicas 99.8 7.6E-20 1.7E-24 165.5 9.9 148 47-209 334-487 (830)
7 KOG0947|consensus 99.8 2.1E-20 4.6E-25 176.2 6.1 152 47-210 399-607 (1248)
8 COG4581 Superfamily II RNA hel 99.8 2.1E-19 4.5E-24 173.4 10.6 135 47-191 225-402 (1041)
9 COG1201 Lhr Lhr-like helicases 99.8 6.5E-19 1.4E-23 167.5 13.8 158 46-217 144-306 (814)
10 PRK01172 ski2-like helicase; P 99.8 1.9E-18 4.1E-23 164.3 13.7 140 36-191 113-259 (674)
11 PRK09751 putative ATP-dependen 99.8 1.2E-18 2.6E-23 174.4 12.7 138 47-191 120-267 (1490)
12 PRK00254 ski2-like helicase; P 99.8 2.3E-18 4.9E-23 164.9 12.7 136 38-192 118-262 (720)
13 KOG0950|consensus 99.7 2.1E-17 4.7E-22 156.4 6.3 134 49-193 339-485 (1008)
14 PRK13767 ATP-dependent helicas 99.7 6.7E-16 1.4E-20 150.5 13.0 135 46-191 167-307 (876)
15 TIGR03817 DECH_helic helicase/ 99.7 2.1E-15 4.5E-20 144.7 15.6 142 43-191 149-294 (742)
16 KOG0952|consensus 99.7 1.7E-17 3.8E-22 158.0 1.0 167 40-217 1026-1207(1230)
17 COG1205 Distinct helicase fami 99.5 3.2E-13 6.9E-18 130.9 13.5 140 43-188 187-326 (851)
18 KOG0951|consensus 99.4 1.6E-13 3.4E-18 133.1 3.1 159 16-192 1222-1383(1674)
19 PRK11776 ATP-dependent RNA hel 99.2 1.1E-10 2.5E-15 106.4 11.0 121 49-192 145-266 (460)
20 PRK10590 ATP-dependent RNA hel 99.1 2.6E-10 5.7E-15 104.1 9.3 122 48-191 146-268 (456)
21 PTZ00110 helicase; Provisional 99.1 4.9E-10 1.1E-14 104.6 11.2 122 49-191 275-400 (545)
22 PRK01297 ATP-dependent RNA hel 99.0 8E-10 1.7E-14 101.4 9.0 125 46-191 232-358 (475)
23 PLN00206 DEAD-box ATP-dependen 99.0 1.7E-09 3.7E-14 100.3 11.0 134 35-191 247-390 (518)
24 TIGR01587 cas3_core CRISPR-ass 99.0 3.7E-09 8.1E-14 93.2 12.3 142 53-215 126-278 (358)
25 TIGR00614 recQ_fam ATP-depende 99.0 2E-09 4.3E-14 98.8 10.2 139 49-207 125-271 (470)
26 PRK11192 ATP-dependent RNA hel 99.0 3.8E-09 8.2E-14 95.7 11.5 121 49-191 145-268 (434)
27 PRK11634 ATP-dependent RNA hel 99.0 4.2E-09 9.2E-14 99.7 11.0 121 49-191 147-268 (629)
28 PRK04537 ATP-dependent RNA hel 99.0 4.1E-09 8.9E-14 98.9 10.7 123 49-192 157-281 (572)
29 PTZ00424 helicase 45; Provisio 99.0 3.8E-09 8.2E-14 94.4 9.9 123 48-191 167-290 (401)
30 TIGR03158 cas3_cyano CRISPR-as 98.9 5.8E-09 1.3E-13 92.5 10.0 130 48-191 142-295 (357)
31 TIGR01389 recQ ATP-dependent D 98.9 1.2E-08 2.6E-13 96.1 11.8 134 51-206 127-268 (591)
32 PRK04837 ATP-dependent RNA hel 98.8 1.7E-08 3.6E-13 91.3 8.8 121 49-191 155-278 (423)
33 KOG0328|consensus 98.8 1.8E-08 4E-13 85.4 7.7 144 49-214 167-315 (400)
34 PRK11057 ATP-dependent DNA hel 98.8 3.7E-08 7.9E-13 93.2 9.7 135 51-207 139-281 (607)
35 COG0513 SrmB Superfamily II DN 98.8 6.9E-08 1.5E-12 89.6 11.1 124 47-192 170-297 (513)
36 KOG0330|consensus 98.7 1.2E-07 2.7E-12 83.4 11.5 144 26-192 171-324 (476)
37 KOG0331|consensus 98.7 3.3E-08 7.2E-13 90.6 7.3 123 49-191 237-364 (519)
38 PLN03137 ATP-dependent DNA hel 98.7 8.8E-08 1.9E-12 94.6 10.4 135 52-207 582-725 (1195)
39 PHA02653 RNA helicase NPH-II; 98.7 1.8E-07 3.9E-12 89.1 10.7 127 48-191 288-418 (675)
40 KOG0326|consensus 98.6 8.2E-08 1.8E-12 82.8 7.0 123 47-192 223-346 (459)
41 TIGR01970 DEAH_box_HrpB ATP-de 98.6 2.1E-07 4.5E-12 90.5 10.4 122 48-191 110-232 (819)
42 COG0514 RecQ Superfamily II DN 98.6 3.9E-07 8.4E-12 85.0 10.3 138 51-209 131-277 (590)
43 TIGR01967 DEAH_box_HrpA ATP-de 98.6 1E-07 2.2E-12 95.6 6.9 127 47-191 175-302 (1283)
44 PRK11664 ATP-dependent RNA hel 98.6 3E-07 6.4E-12 89.5 9.5 121 48-190 113-234 (812)
45 PRK11131 ATP-dependent RNA hel 98.5 1.1E-07 2.5E-12 95.2 6.2 125 47-191 182-309 (1294)
46 KOG4150|consensus 98.5 1.9E-06 4.1E-11 79.4 13.1 143 44-191 405-548 (1034)
47 KOG0335|consensus 98.4 7.7E-07 1.7E-11 80.7 8.3 173 26-215 194-387 (482)
48 TIGR00580 mfd transcription-re 98.4 1.8E-06 4E-11 84.9 11.2 115 48-192 570-684 (926)
49 KOG0333|consensus 98.4 3.8E-06 8.2E-11 76.7 11.2 136 43-192 388-541 (673)
50 TIGR02621 cas3_GSU0051 CRISPR- 98.3 2.8E-06 6E-11 82.4 10.1 126 48-192 168-296 (844)
51 PRK10689 transcription-repair 98.2 9.9E-06 2.1E-10 81.5 10.8 113 49-192 720-833 (1147)
52 KOG0351|consensus 98.1 3.4E-05 7.3E-10 75.9 12.8 136 52-206 386-529 (941)
53 PRK10917 ATP-dependent DNA hel 98.1 6.4E-05 1.4E-09 72.2 14.4 116 48-192 380-503 (681)
54 PRK09694 helicase Cas3; Provis 98.1 1.6E-05 3.4E-10 77.9 10.2 35 158-192 550-584 (878)
55 KOG0340|consensus 98.1 1.2E-05 2.6E-10 70.4 8.2 127 42-191 144-277 (442)
56 KOG0949|consensus 98.1 2.2E-06 4.7E-11 82.9 3.6 63 39-113 620-682 (1330)
57 KOG0327|consensus 98.1 1.1E-05 2.3E-10 71.0 7.3 140 50-214 168-312 (397)
58 TIGR00643 recG ATP-dependent D 98.1 3.4E-05 7.3E-10 73.4 11.3 117 49-191 355-479 (630)
59 KOG0346|consensus 98.0 7.4E-05 1.6E-09 67.1 11.7 124 47-192 166-292 (569)
60 PF00270 DEAD: DEAD/DEAH box h 98.0 2.1E-06 4.6E-11 67.0 1.2 61 35-103 96-163 (169)
61 KOG4284|consensus 98.0 1.2E-05 2.5E-10 75.2 6.1 128 49-192 165-296 (980)
62 KOG0343|consensus 98.0 2E-05 4.3E-10 72.5 7.2 122 50-192 214-337 (758)
63 KOG0342|consensus 97.9 6.6E-05 1.4E-09 68.1 9.1 125 47-189 226-351 (543)
64 KOG0338|consensus 97.9 3.1E-05 6.6E-10 70.7 6.8 148 22-189 272-447 (691)
65 KOG0353|consensus 97.8 2E-05 4.3E-10 69.7 4.8 125 51-192 215-341 (695)
66 COG1643 HrpA HrpA-like helicas 97.8 4E-05 8.7E-10 74.5 7.0 123 46-190 157-281 (845)
67 TIGR00595 priA primosomal prot 97.8 0.00012 2.6E-09 68.0 9.5 141 24-180 44-210 (505)
68 cd00268 DEADc DEAD-box helicas 97.7 2E-05 4.3E-10 63.7 3.0 47 48-104 140-186 (203)
69 KOG0336|consensus 97.7 0.00013 2.8E-09 65.2 7.8 144 49-215 365-515 (629)
70 PHA02558 uvsW UvsW helicase; P 97.7 0.00023 4.9E-09 66.0 9.5 45 47-105 218-262 (501)
71 KOG0332|consensus 97.7 7.2E-05 1.6E-09 66.0 5.7 127 46-192 227-354 (477)
72 KOG0337|consensus 97.7 0.00011 2.3E-09 65.9 6.5 124 48-192 161-285 (529)
73 PRK09401 reverse gyrase; Revie 97.6 0.00015 3.2E-09 73.4 7.8 24 168-191 328-354 (1176)
74 KOG0339|consensus 97.6 0.00033 7.1E-09 64.2 8.8 124 48-191 367-491 (731)
75 KOG0922|consensus 97.4 0.00025 5.5E-09 66.5 5.4 122 47-192 159-282 (674)
76 KOG0926|consensus 97.3 0.00046 1E-08 66.2 6.6 133 46-194 367-507 (1172)
77 COG1203 CRISPR-associated heli 97.2 0.0029 6.4E-08 61.4 11.1 124 52-193 339-465 (733)
78 TIGR01054 rgy reverse gyrase. 97.1 0.0028 6.1E-08 64.3 9.4 24 168-191 326-352 (1171)
79 KOG0345|consensus 97.1 0.0013 2.9E-08 59.6 6.4 120 49-192 155-279 (567)
80 smart00487 DEXDc DEAD-like hel 97.0 0.00058 1.3E-08 53.5 3.0 51 49-109 127-177 (201)
81 KOG0341|consensus 97.0 0.0029 6.3E-08 56.5 7.5 134 34-191 302-444 (610)
82 PRK14701 reverse gyrase; Provi 96.9 0.0036 7.9E-08 65.3 9.1 24 168-191 330-356 (1638)
83 COG4098 comFA Superfamily II D 96.9 0.012 2.7E-07 51.8 10.5 154 23-194 162-331 (441)
84 PRK05580 primosome assembly pr 96.8 0.004 8.7E-08 59.9 8.0 78 24-110 209-311 (679)
85 TIGR00603 rad25 DNA repair hel 96.8 0.0034 7.4E-08 60.6 7.0 43 166-208 494-537 (732)
86 KOG0334|consensus 96.7 0.0022 4.8E-08 62.9 5.2 122 47-191 511-636 (997)
87 PRK13766 Hef nuclease; Provisi 96.6 0.0088 1.9E-07 58.2 8.3 26 166-191 363-388 (773)
88 COG1061 SSL2 DNA or RNA helica 96.4 0.029 6.2E-07 51.4 9.8 43 167-209 282-329 (442)
89 KOG0920|consensus 96.2 0.0076 1.7E-07 59.2 5.4 130 47-191 283-436 (924)
90 KOG0924|consensus 96.0 0.012 2.5E-07 56.1 5.5 124 45-192 462-587 (1042)
91 KOG0348|consensus 95.8 0.0088 1.9E-07 55.4 3.7 62 49-111 285-351 (708)
92 KOG0350|consensus 95.7 0.037 8.1E-07 50.9 7.0 132 48-189 292-450 (620)
93 PRK12898 secA preprotein trans 95.6 0.02 4.4E-07 54.7 5.3 85 94-192 410-497 (656)
94 KOG0329|consensus 95.6 0.0026 5.6E-08 53.9 -0.6 83 23-115 156-241 (387)
95 COG1198 PriA Primosomal protei 95.4 0.11 2.4E-06 50.3 9.6 144 23-181 263-433 (730)
96 cd00046 DEXDc DEAD-like helica 95.3 0.0095 2.1E-07 43.6 1.6 43 50-102 102-144 (144)
97 KOG0923|consensus 95.3 0.076 1.6E-06 50.6 7.8 119 50-192 377-497 (902)
98 KOG0344|consensus 95.3 0.039 8.4E-07 51.4 5.8 118 48-189 285-408 (593)
99 KOG0352|consensus 95.2 0.052 1.1E-06 49.3 6.3 86 25-116 104-202 (641)
100 KOG0354|consensus 94.6 0.018 3.8E-07 55.4 1.7 55 49-112 177-232 (746)
101 COG1111 MPH1 ERCC4-like helica 94.5 0.18 3.8E-06 46.6 7.8 58 49-116 129-190 (542)
102 TIGR00631 uvrb excinuclease AB 94.3 0.12 2.5E-06 49.8 6.7 32 160-191 434-465 (655)
103 KOG0347|consensus 94.1 0.023 5E-07 52.9 1.4 52 47-103 336-387 (731)
104 PF04851 ResIII: Type III rest 93.7 0.015 3.2E-07 45.4 -0.6 38 51-103 146-183 (184)
105 KOG0349|consensus 93.2 0.1 2.2E-06 47.6 3.8 93 6-103 315-411 (725)
106 PRK13104 secA preprotein trans 92.9 0.34 7.3E-06 47.9 7.2 86 94-192 381-468 (896)
107 COG1204 Superfamily II helicas 92.8 0.12 2.6E-06 50.5 4.0 34 17-50 301-334 (766)
108 TIGR00963 secA preprotein tran 92.5 0.26 5.5E-06 47.9 5.8 86 94-192 342-429 (745)
109 KOG0925|consensus 91.4 4.2 9.1E-05 37.9 11.8 150 18-192 112-277 (699)
110 PRK12904 preprotein translocas 91.3 0.39 8.4E-06 47.3 5.5 86 94-192 367-454 (830)
111 TIGR02562 cas3_yersinia CRISPR 90.8 0.11 2.4E-06 51.9 1.3 40 56-104 597-636 (1110)
112 COG1200 RecG RecG-like helicas 90.8 1.9 4.1E-05 41.4 9.3 133 49-210 382-531 (677)
113 TIGR01407 dinG_rel DnaQ family 90.6 2.6 5.5E-05 41.9 10.6 95 91-190 594-696 (850)
114 PRK09200 preprotein translocas 90.5 0.78 1.7E-05 45.1 6.8 85 94-192 365-452 (790)
115 PRK12906 secA preprotein trans 90.3 0.86 1.9E-05 44.7 6.9 86 94-192 377-464 (796)
116 TIGR03714 secA2 accessory Sec 90.3 1.6 3.4E-05 42.8 8.6 86 94-192 361-448 (762)
117 PRK13107 preprotein translocas 90.3 1.5 3.3E-05 43.5 8.5 86 94-192 386-473 (908)
118 PF13872 AAA_34: P-loop contai 89.6 0.3 6.5E-06 42.5 2.9 44 53-103 174-221 (303)
119 PRK11448 hsdR type I restricti 89.5 0.49 1.1E-05 48.3 4.7 24 168-191 698-721 (1123)
120 PF02399 Herpes_ori_bp: Origin 88.8 2.8 6E-05 41.2 9.0 138 47-192 138-306 (824)
121 PRK12900 secA preprotein trans 87.6 1.3 2.9E-05 44.3 6.1 86 94-192 535-622 (1025)
122 KOG0953|consensus 87.5 1.4 3E-05 41.5 5.8 120 51-206 275-401 (700)
123 cd00079 HELICc Helicase superf 87.3 2 4.3E-05 31.1 5.7 24 167-190 27-50 (131)
124 PRK00254 ski2-like helicase; P 86.7 1.1 2.3E-05 43.6 5.0 40 11-50 276-315 (720)
125 PF07652 Flavi_DEAD: Flaviviru 86.7 0.34 7.5E-06 37.7 1.3 45 49-105 93-139 (148)
126 PF00176 SNF2_N: SNF2 family N 86.4 0.33 7.2E-06 40.9 1.2 52 51-115 134-190 (299)
127 PRK14873 primosome assembly pr 84.9 5.1 0.00011 38.8 8.5 74 24-108 207-308 (665)
128 PRK11747 dinG ATP-dependent DN 81.9 17 0.00037 35.4 10.8 94 93-191 457-557 (697)
129 COG1197 Mfd Transcription-repa 81.7 11 0.00024 38.5 9.6 164 3-210 680-850 (1139)
130 PF05621 TniB: Bacterial TniB 80.8 2.2 4.7E-05 37.2 3.9 42 51-98 145-186 (302)
131 PRK02362 ski2-like helicase; P 80.3 2.4 5.1E-05 41.4 4.4 31 21-51 294-324 (737)
132 PRK08074 bifunctional ATP-depe 79.5 18 0.00039 36.5 10.4 98 92-191 672-775 (928)
133 COG1199 DinG Rad3-related DNA 79.4 9.8 0.00021 36.4 8.3 98 91-192 402-503 (654)
134 PF06733 DEAD_2: DEAD_2; Inte 78.6 0.27 5.8E-06 38.9 -2.3 33 33-66 124-159 (174)
135 COG0556 UvrB Helicase subunit 78.5 16 0.00034 34.6 8.8 128 47-192 327-470 (663)
136 PRK04914 ATP-dependent helicas 78.5 1 2.2E-05 45.2 1.3 42 168-209 493-541 (956)
137 TIGR00348 hsdR type I site-spe 76.3 0.93 2E-05 43.8 0.3 25 168-192 514-538 (667)
138 PRK05298 excinuclease ABC subu 75.0 6.6 0.00014 37.9 5.7 29 163-191 441-469 (652)
139 TIGR00604 rad3 DNA repair heli 74.5 20 0.00044 34.8 9.0 94 93-190 442-544 (705)
140 PLN03142 Probable chromatin-re 72.1 2 4.4E-05 43.5 1.5 43 166-208 485-533 (1033)
141 PRK07246 bifunctional ATP-depe 70.4 30 0.00064 34.5 9.1 93 91-190 572-669 (820)
142 PRK12326 preprotein translocas 70.4 30 0.00066 33.9 8.9 86 94-192 364-451 (764)
143 KOG0950|consensus 68.0 4.6 9.9E-05 40.3 2.9 37 18-54 510-546 (1008)
144 PRK01172 ski2-like helicase; P 67.4 5.6 0.00012 38.3 3.4 31 20-50 275-305 (674)
145 PF06862 DUF1253: Protein of u 64.1 68 0.0015 29.6 9.5 141 47-191 157-323 (442)
146 KOG0389|consensus 63.6 7.6 0.00017 38.1 3.4 62 40-113 511-575 (941)
147 KOG1000|consensus 61.8 4.1 8.9E-05 38.0 1.3 43 167-209 491-539 (689)
148 KOG4439|consensus 61.4 11 0.00024 36.6 4.1 57 48-116 458-520 (901)
149 PRK12903 secA preprotein trans 60.7 35 0.00076 34.2 7.4 86 94-192 363-450 (925)
150 PF13173 AAA_14: AAA domain 60.3 5.6 0.00012 29.5 1.6 48 52-112 62-110 (128)
151 PF00308 Bac_DnaA: Bacterial d 55.1 14 0.00031 30.3 3.3 52 44-103 90-141 (219)
152 KOG1002|consensus 54.0 4.2 9.1E-05 38.0 -0.0 58 47-116 310-373 (791)
153 PRK13103 secA preprotein trans 52.5 62 0.0014 32.6 7.7 86 94-192 386-473 (913)
154 PRK04914 ATP-dependent helicas 50.8 47 0.001 33.7 6.7 45 50-103 271-316 (956)
155 KOG0390|consensus 50.5 12 0.00027 36.7 2.5 55 47-114 372-428 (776)
156 CHL00122 secA preprotein trans 50.0 53 0.0011 32.9 6.7 86 94-192 361-448 (870)
157 PRK12899 secA preprotein trans 49.3 93 0.002 31.6 8.3 86 94-192 505-592 (970)
158 PRK12901 secA preprotein trans 48.0 69 0.0015 32.8 7.2 86 94-192 565-652 (1112)
159 COG0052 RpsB Ribosomal protein 47.8 1.1E+02 0.0024 26.0 7.4 35 158-192 53-87 (252)
160 PF05876 Terminase_GpA: Phage 47.2 13 0.00029 35.1 2.2 102 3-114 87-194 (557)
161 COG2256 MGS1 ATPase related to 46.4 23 0.0005 32.3 3.4 69 23-106 62-144 (436)
162 KOG0391|consensus 46.1 14 0.0003 38.3 2.1 26 51-78 737-762 (1958)
163 PRK06893 DNA replication initi 45.9 19 0.00042 29.6 2.7 18 48-66 88-105 (229)
164 PRK12902 secA preprotein trans 45.4 75 0.0016 32.1 6.9 86 94-192 376-463 (939)
165 smart00488 DEXDc2 DEAD-like he 44.1 3.5 7.6E-05 35.5 -2.1 14 52-66 237-250 (289)
166 smart00489 DEXDc3 DEAD-like he 44.1 3.5 7.6E-05 35.5 -2.1 14 52-66 237-250 (289)
167 PF05970 PIF1: PIF1-like helic 44.1 22 0.00047 31.6 2.9 36 44-84 95-130 (364)
168 PRK14958 DNA polymerase III su 44.0 25 0.00053 33.0 3.4 45 44-99 103-156 (509)
169 COG1111 MPH1 ERCC4-like helica 43.7 81 0.0018 29.7 6.5 27 166-192 364-390 (542)
170 PF13401 AAA_22: AAA domain; P 43.2 20 0.00044 26.0 2.2 35 54-100 90-124 (131)
171 TIGR00596 rad1 DNA repair prot 41.9 50 0.0011 32.9 5.3 57 49-115 29-92 (814)
172 KOG0298|consensus 40.9 39 0.00084 35.2 4.3 51 54-116 514-568 (1394)
173 KOG1123|consensus 38.3 7 0.00015 36.7 -1.1 27 166-192 541-567 (776)
174 KOG0385|consensus 38.1 22 0.00049 35.0 2.1 21 46-67 282-304 (971)
175 COG3855 Fbp Uncharacterized pr 38.1 49 0.0011 30.8 4.2 65 48-113 182-247 (648)
176 PRK12422 chromosomal replicati 38.0 30 0.00065 31.8 2.9 22 44-66 195-216 (445)
177 PRK00149 dnaA chromosomal repl 37.8 42 0.00092 30.6 3.9 23 44-67 204-226 (450)
178 PRK07003 DNA polymerase III su 37.6 20 0.00043 35.5 1.7 38 52-100 120-157 (830)
179 PRK12323 DNA polymerase III su 37.0 20 0.00043 34.9 1.6 38 52-100 125-162 (700)
180 PRK14087 dnaA chromosomal repl 36.3 33 0.00073 31.5 2.9 49 46-102 201-249 (450)
181 TIGR00362 DnaA chromosomal rep 36.1 43 0.00093 30.1 3.6 23 44-67 192-214 (405)
182 PRK05642 DNA replication initi 35.8 47 0.001 27.5 3.5 21 46-67 92-112 (234)
183 PRK08084 DNA replication initi 35.7 56 0.0012 27.0 4.0 20 47-67 93-112 (235)
184 KOG0387|consensus 34.6 23 0.00049 35.0 1.6 49 51-112 337-387 (923)
185 KOG0921|consensus 34.3 17 0.00037 36.5 0.7 83 21-113 448-545 (1282)
186 PF00004 AAA: ATPase family as 34.1 23 0.00049 25.5 1.2 47 53-103 60-113 (132)
187 KOG0949|consensus 33.4 31 0.00068 35.1 2.3 24 23-46 955-978 (1330)
188 PTZ00112 origin recognition co 33.3 1.2E+02 0.0027 31.0 6.3 48 52-107 870-917 (1164)
189 PF07652 Flavi_DEAD: Flaviviru 33.1 66 0.0014 25.1 3.7 30 162-191 27-56 (148)
190 PF11116 DUF2624: Protein of u 31.2 86 0.0019 22.1 3.6 38 177-214 32-69 (85)
191 PHA03368 DNA packaging termina 30.5 28 0.00061 33.9 1.5 39 51-102 352-390 (738)
192 PRK00411 cdc6 cell division co 30.1 37 0.00079 30.0 2.1 44 54-103 141-184 (394)
193 COG2812 DnaX DNA polymerase II 29.2 26 0.00056 33.0 1.0 16 51-67 119-134 (515)
194 PF06874 FBPase_2: Firmicute f 29.2 22 0.00047 34.1 0.5 64 49-113 177-241 (640)
195 COG2519 GCD14 tRNA(1-methylade 29.2 1.2E+02 0.0025 26.0 4.8 38 155-192 175-212 (256)
196 PF02617 ClpS: ATP-dependent C 29.1 78 0.0017 21.6 3.2 33 160-192 39-71 (82)
197 PRK12311 rpsB 30S ribosomal pr 29.1 2.3E+02 0.0049 25.1 6.8 32 161-192 51-82 (326)
198 TIGR02881 spore_V_K stage V sp 28.7 58 0.0012 27.3 3.0 20 46-66 98-119 (261)
199 PRK07994 DNA polymerase III su 28.3 34 0.00074 33.1 1.7 36 52-98 120-155 (647)
200 PF05707 Zot: Zonular occluden 28.2 25 0.00054 28.1 0.6 49 51-106 79-130 (193)
201 PF05872 DUF853: Bacterial pro 28.1 62 0.0013 30.2 3.2 25 51-75 254-278 (502)
202 PRK10536 hypothetical protein; 28.0 31 0.00067 29.5 1.2 32 53-98 178-209 (262)
203 TIGR03420 DnaA_homol_Hda DnaA 27.3 66 0.0014 25.8 3.0 20 47-67 86-105 (226)
204 PRK14960 DNA polymerase III su 27.1 66 0.0014 31.4 3.3 37 52-99 119-155 (702)
205 PRK14956 DNA polymerase III su 26.8 35 0.00076 31.8 1.4 14 52-66 122-135 (484)
206 PRK04296 thymidine kinase; Pro 26.4 49 0.0011 26.4 2.0 15 51-66 78-92 (190)
207 COG4626 Phage terminase-like p 26.4 37 0.00081 32.1 1.5 40 51-100 184-223 (546)
208 COG1875 NYN ribonuclease and A 26.3 37 0.0008 30.8 1.4 38 53-108 353-390 (436)
209 PF03354 Terminase_1: Phage Te 26.3 23 0.0005 32.7 0.1 39 51-100 123-161 (477)
210 PF02562 PhoH: PhoH-like prote 26.3 21 0.00046 29.3 -0.1 32 53-98 121-152 (205)
211 TIGR00596 rad1 DNA repair prot 26.3 96 0.0021 31.0 4.4 23 168-190 295-317 (814)
212 PRK14964 DNA polymerase III su 25.7 33 0.00072 32.0 1.1 38 51-99 116-153 (491)
213 PRK14951 DNA polymerase III su 25.6 59 0.0013 31.3 2.7 15 52-67 125-139 (618)
214 PF03796 DnaB_C: DnaB-like hel 25.5 44 0.00096 27.8 1.7 46 51-101 130-179 (259)
215 TIGR02606 antidote_CC2985 puta 25.1 86 0.0019 20.9 2.7 34 1-34 2-35 (69)
216 PF12846 AAA_10: AAA-like doma 25.0 47 0.001 27.6 1.8 14 53-67 222-235 (304)
217 PRK14949 DNA polymerase III su 25.0 43 0.00094 33.8 1.7 36 52-98 120-155 (944)
218 PRK08727 hypothetical protein; 24.9 73 0.0016 26.2 2.9 19 48-67 90-108 (233)
219 TIGR01011 rpsB_bact ribosomal 24.9 2.5E+02 0.0055 23.2 6.1 34 159-192 52-85 (225)
220 TIGR00678 holB DNA polymerase 23.5 44 0.00096 26.3 1.3 38 51-99 96-133 (188)
221 PHA00350 putative assembly pro 23.0 56 0.0012 29.7 2.0 17 51-68 81-97 (399)
222 PRK14961 DNA polymerase III su 23.0 43 0.00093 29.7 1.2 37 52-99 120-156 (363)
223 TIGR02880 cbbX_cfxQ probable R 22.9 1.7E+02 0.0036 25.0 4.8 19 46-65 114-134 (284)
224 KOG1513|consensus 22.9 58 0.0013 32.6 2.1 40 53-103 407-455 (1300)
225 TIGR02928 orc1/cdc6 family rep 22.8 43 0.00094 29.2 1.2 45 54-103 132-176 (365)
226 PRK15483 type III restriction- 22.7 42 0.00091 34.1 1.2 44 48-104 197-240 (986)
227 PRK14086 dnaA chromosomal repl 22.3 93 0.002 30.0 3.3 23 44-67 370-392 (617)
228 PHA03372 DNA packaging termina 22.2 47 0.001 32.0 1.3 40 50-102 298-337 (668)
229 PF09145 Ubiq-assoc: Ubiquitin 22.2 47 0.001 20.4 0.9 34 47-82 9-42 (46)
230 cd00158 RHOD Rhodanese Homolog 22.1 1.3E+02 0.0028 19.6 3.3 27 165-191 47-73 (89)
231 PRK07764 DNA polymerase III su 21.9 54 0.0012 32.7 1.7 38 51-99 120-157 (824)
232 cd01532 4RHOD_Repeat_1 Member 21.9 1.3E+02 0.0028 20.6 3.3 25 167-191 49-75 (92)
233 cd01425 RPS2 Ribosomal protein 21.5 3E+02 0.0065 22.0 5.8 34 159-192 46-79 (193)
234 PRK14952 DNA polymerase III su 21.4 37 0.00079 32.5 0.5 40 49-99 116-155 (584)
235 TIGR03117 cas_csf4 CRISPR-asso 21.4 7.6E+02 0.017 24.0 10.2 27 167-193 469-495 (636)
236 PRK04841 transcriptional regul 21.3 49 0.0011 32.6 1.4 41 54-104 124-164 (903)
237 PRK07952 DNA replication prote 21.2 1.3E+02 0.0028 25.3 3.6 33 38-71 149-181 (244)
238 PF04364 DNA_pol3_chi: DNA pol 21.0 1.7E+02 0.0037 22.1 4.0 26 163-188 24-49 (137)
239 PRK08903 DnaA regulatory inact 20.9 76 0.0017 25.7 2.2 18 48-66 87-104 (227)
240 cd01523 RHOD_Lact_B Member of 20.7 1.7E+02 0.0037 20.1 3.8 29 163-191 56-84 (100)
241 PF01637 Arch_ATPase: Archaeal 20.6 1.1E+02 0.0025 24.0 3.2 25 56-80 122-148 (234)
242 PRK08691 DNA polymerase III su 20.6 57 0.0012 32.0 1.5 38 51-99 119-156 (709)
243 PHA01735 hypothetical protein 20.5 61 0.0013 21.9 1.2 37 57-115 9-45 (76)
244 PF09848 DUF2075: Uncharacteri 20.1 36 0.00079 29.9 0.1 16 50-66 82-97 (352)
245 cd01524 RHOD_Pyr_redox Member 20.1 2.2E+02 0.0048 19.1 4.2 28 164-191 47-74 (90)
No 1
>KOG0952|consensus
Probab=99.94 E-value=2.1e-26 Score=217.91 Aligned_cols=152 Identities=28% Similarity=0.369 Sum_probs=129.5
Q ss_pred ecccCCChhHHH----------HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC
Q psy3103 35 YHHAGMSPEDRT----------IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN 104 (217)
Q Consensus 35 ~~h~~l~~~~~~----------~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n 104 (217)
+.-.++|||||+ .++..|+| |||||+|+|.| +||+++|.+++|+.++. .-....+||||||||+||
T Consensus 212 tqiiVTTPEKwDvvTRk~~~d~~l~~~V~L-viIDEVHlLhd-~RGpvlEtiVaRtlr~v--essqs~IRivgLSATlPN 287 (1230)
T KOG0952|consen 212 TQIIVTTPEKWDVVTRKSVGDSALFSLVRL-VIIDEVHLLHD-DRGPVLETIVARTLRLV--ESSQSMIRIVGLSATLPN 287 (1230)
T ss_pred cCEEEecccceeeeeeeeccchhhhhheee-EEeeeehhhcC-cccchHHHHHHHHHHHH--HhhhhheEEEEeeccCCC
Confidence 445677999995 78999999 99999999999 59999999999987664 444678999999999999
Q ss_pred HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHH
Q psy3103 105 IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHT 184 (217)
Q Consensus 105 ~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~ 184 (217)
.+|+|+||+.++..+++.|+..+||+|+++.++|.+.+. .+.+....-...+.++++.+.+|+|++|||+||+.+-++
T Consensus 288 ~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~--~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~t 365 (1230)
T KOG0952|consen 288 YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKK--NRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRT 365 (1230)
T ss_pred HHHHHHHhcCCCccceeeecccccccceeeeEEeeeccc--chhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHH
Confidence 999999999998888999999999999999999987662 222222222345677888889999999999999999999
Q ss_pred HHHHHHhc
Q psy3103 185 CTILRQEM 192 (217)
Q Consensus 185 A~~l~~~~ 192 (217)
|+.+.+.+
T Consensus 366 A~~l~~~a 373 (1230)
T KOG0952|consen 366 AKKLRERA 373 (1230)
T ss_pred HHHHHHHH
Confidence 99999887
No 2
>KOG0951|consensus
Probab=99.91 E-value=5.3e-24 Score=204.21 Aligned_cols=170 Identities=28% Similarity=0.420 Sum_probs=135.0
Q ss_pred CCChhHHH---------HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHH
Q psy3103 39 GMSPEDRT---------IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIA 109 (217)
Q Consensus 39 ~l~~~~~~---------~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a 109 (217)
..|||+|+ .+.+-+++ +|+||+|++.| +||+++|.++.|...-+ .....++|+||||||+||.+|++
T Consensus 416 V~TPEK~DiITRk~gdraY~qlvrL-lIIDEIHLLhD-dRGpvLESIVaRt~r~s--es~~e~~RlVGLSATLPNy~DV~ 491 (1674)
T KOG0951|consen 416 VTTPEKWDIITRKSGDRAYEQLVRL-LIIDEIHLLHD-DRGPVLESIVARTFRRS--ESTEEGSRLVGLSATLPNYEDVA 491 (1674)
T ss_pred EeccchhhhhhcccCchhHHHHHHH-Hhhhhhhhccc-ccchHHHHHHHHHHHHh--hhcccCceeeeecccCCchhhhH
Confidence 34888885 56667999 99999999998 59999999999976553 55667899999999999999999
Q ss_pred hhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhH-HHHHHHHHhcCCCCeEEEeCChhHHHHHHHHH
Q psy3103 110 LWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSY-KLKSIIMQYSDNKPTLIFCATRKGVEHTCTIL 188 (217)
Q Consensus 110 ~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l 188 (217)
.||++++ ...|.|++++||+|+.+.++|...+....+++ .+++ ++.++++... ..|+||||+||+.+-++|+.|
T Consensus 492 ~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~ek~~~~~~q---amNe~~yeKVm~~ag-k~qVLVFVHsRkET~ktA~aI 566 (1674)
T KOG0951|consen 492 SFLRVDP-EGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQ---AMNEACYEKVLEHAG-KNQVLVFVHSRKETAKTARAI 566 (1674)
T ss_pred HHhccCc-ccccccCcccCcCCccceEeccccCCchHHHH---HHHHHHHHHHHHhCC-CCcEEEEEEechHHHHHHHHH
Confidence 9999987 56679999999999999999988775544442 3344 4566666654 589999999999999999999
Q ss_pred HHhc-------ccc-CCHHHHHHHHHHHhhccCCCCC
Q psy3103 189 RQEM-------SIQ-TSPEVREIVDKCMSNMMDNKLK 217 (217)
Q Consensus 189 ~~~~-------~~~-l~~~e~~~l~~~~~~i~d~~lk 217 (217)
++.+ .+. ..+..++.+.-.++...|.+||
T Consensus 567 Rd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLk 603 (1674)
T KOG0951|consen 567 RDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLK 603 (1674)
T ss_pred HHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHH
Confidence 9766 111 1344567776666667777665
No 3
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.89 E-value=1.8e-23 Score=199.38 Aligned_cols=153 Identities=28% Similarity=0.348 Sum_probs=113.5
Q ss_pred CCChhHHH-------HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhh
Q psy3103 39 GMSPEDRT-------IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALW 111 (217)
Q Consensus 39 ~l~~~~~~-------~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~w 111 (217)
++|+|+|. .++.+|++ |||||+|+++|..||+.+|.+++|++.. ...+||||||||+||+.++|+|
T Consensus 127 VtT~EK~Dsl~R~~~~~~~~V~l-vViDEiH~l~d~~RG~~lE~iv~r~~~~------~~~~rivgLSATlpN~~evA~w 199 (766)
T COG1204 127 VTTPEKLDSLTRKRPSWIEEVDL-VVIDEIHLLGDRTRGPVLESIVARMRRL------NELIRIVGLSATLPNAEEVADW 199 (766)
T ss_pred EEchHHhhHhhhcCcchhhcccE-EEEeeeeecCCcccCceehhHHHHHHhh------CcceEEEEEeeecCCHHHHHHH
Confidence 34777776 45669999 9999999999988999999999999877 4669999999999999999999
Q ss_pred hcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 112 LGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 112 L~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
|+++.....+.+.+..|+++....+.+.....+ ..........+.++++.++.++|+||||+||+.|+..|+.++..
T Consensus 200 L~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k---~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~ 276 (766)
T COG1204 200 LNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK---TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIK 276 (766)
T ss_pred hCCcccccCCCCcccccCCccceEEEEecCccc---cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHH
Confidence 999854333344445555555555555443321 00011113456777788899999999999999999999999975
Q ss_pred ccccCCHHHH
Q psy3103 192 MSIQTSPEVR 201 (217)
Q Consensus 192 ~~~~l~~~e~ 201 (217)
+...+++.+.
T Consensus 277 ~~~~~~~~~~ 286 (766)
T COG1204 277 MSATLSDDEK 286 (766)
T ss_pred HhhcCChhhh
Confidence 5333333333
No 4
>KOG0948|consensus
Probab=99.86 E-value=2.5e-22 Score=185.36 Aligned_cols=153 Identities=20% Similarity=0.311 Sum_probs=117.0
Q ss_pred HHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCC
Q psy3103 46 TIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDD 125 (217)
Q Consensus 46 ~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~ 125 (217)
.++++.|.| ||+||+|++.|.+||.+||..|--| +++.|+|+||||+||+.+||+|+..-..+.|+++..
T Consensus 230 SEvmrEVaW-VIFDEIHYMRDkERGVVWEETIIll---------P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYT 299 (1041)
T KOG0948|consen 230 SEVMREVAW-VIFDEIHYMRDKERGVVWEETIILL---------PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYT 299 (1041)
T ss_pred chHhheeee-EEeeeehhccccccceeeeeeEEec---------cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEee
Confidence 378899999 9999999999999999999987643 899999999999999999999997555567889999
Q ss_pred CCccccceeEEEe---------ecCCCCCchhHHHHHh------------------------------hHHHHHHHHHh-
Q psy3103 126 SFRPVKLTKIVRG---------FPTKPSQSTFQFEMML------------------------------SYKLKSIIMQY- 165 (217)
Q Consensus 126 ~~Rp~~l~~~~~~---------~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~- 165 (217)
++||+|++++++. .+++....+.++...+ ...+++++..+
T Consensus 300 dyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~ 379 (1041)
T KOG0948|consen 300 DYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIM 379 (1041)
T ss_pred cCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHH
Confidence 9999999988652 2233222222222111 01345666544
Q ss_pred -cCCCCeEEEeCChhHHHHHHHHHHHhccccCCHHHHHHHHHHHhh
Q psy3103 166 -SDNKPTLIFCATRKGVEHTCTILRQEMSIQTSPEVREIVDKCMSN 210 (217)
Q Consensus 166 -~~~~~~LVF~~sRk~~e~~A~~l~~~~~~~l~~~e~~~l~~~~~~ 210 (217)
++..|+|||++||++||.+|.++.+. + +.+.+|++-+..+.+.
T Consensus 380 ~~~~~PVIvFSFSkkeCE~~Alqm~kl-d-fN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 380 ERNYLPVIVFSFSKKECEAYALQMSKL-D-FNTDEEKELVETIFNN 423 (1041)
T ss_pred hhcCCceEEEEecHhHHHHHHHhhccC-c-CCChhHHHHHHHHHHH
Confidence 45779999999999999999999877 3 3567778777776654
No 5
>PRK02362 ski2-like helicase; Provisional
Probab=99.85 E-value=8.9e-21 Score=181.80 Aligned_cols=163 Identities=20% Similarity=0.263 Sum_probs=118.0
Q ss_pred cccCCChhHHHH-------HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHH
Q psy3103 36 HHAGMSPEDRTI-------IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDI 108 (217)
Q Consensus 36 ~h~~l~~~~~~~-------~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~ 108 (217)
+-.+.|++++.. +++++++ ||+||+|++++++||+.+|.+++|++++ .+.+|+|+||||++|++++
T Consensus 115 ~IiV~Tpek~~~llr~~~~~l~~v~l-vViDE~H~l~d~~rg~~le~il~rl~~~------~~~~qii~lSATl~n~~~l 187 (737)
T PRK02362 115 DIIVATSEKVDSLLRNGAPWLDDITC-VVVDEVHLIDSANRGPTLEVTLAKLRRL------NPDLQVVALSATIGNADEL 187 (737)
T ss_pred CEEEECHHHHHHHHhcChhhhhhcCE-EEEECccccCCCcchHHHHHHHHHHHhc------CCCCcEEEEcccCCCHHHH
Confidence 334458887754 4568999 9999999999989999999999999876 5789999999999999999
Q ss_pred HhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCc-hhHHHH-HhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHH
Q psy3103 109 ALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQS-TFQFEM-MLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCT 186 (217)
Q Consensus 109 a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~ 186 (217)
++|+++. .+.+++||+++..++...+...... ...... .....+..+.+.+..++++||||+||+.|+.+|.
T Consensus 188 a~wl~~~------~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~ 261 (737)
T PRK02362 188 ADWLDAE------LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAK 261 (737)
T ss_pred HHHhCCC------cccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHH
Confidence 9999976 5678999999987765322110000 000000 0012233444556678999999999999999999
Q ss_pred HHHHhccccCCHHHHHHHHHHHhhc
Q psy3103 187 ILRQEMSIQTSPEVREIVDKCMSNM 211 (217)
Q Consensus 187 ~l~~~~~~~l~~~e~~~l~~~~~~i 211 (217)
.+.......+.+.+.+.+.+..+++
T Consensus 262 ~L~~~~~~~~~~~~~~~~~~~~~~l 286 (737)
T PRK02362 262 RAASALKKTLTAAERAELAELAEEI 286 (737)
T ss_pred HHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 9987764334455556666655554
No 6
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.81 E-value=7.6e-20 Score=165.47 Aligned_cols=148 Identities=20% Similarity=0.192 Sum_probs=108.4
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
..+.+++. |||||+|++.|.+||+.+.-++.|||++ .+..|+|+||||++||+++|+.|+.+ .+.-+
T Consensus 334 ~~lgdiGt-VVIDEiHtL~deERG~RLdGLI~RLr~l------~~~AQ~i~LSATVgNp~elA~~l~a~------lV~y~ 400 (830)
T COG1202 334 KDLGDIGT-VVIDEIHTLEDEERGPRLDGLIGRLRYL------FPGAQFIYLSATVGNPEELAKKLGAK------LVLYD 400 (830)
T ss_pred Ccccccce-EEeeeeeeccchhcccchhhHHHHHHHh------CCCCeEEEEEeecCChHHHHHHhCCe------eEeec
Confidence 34668999 9999999999999999999999999998 47999999999999999999999987 45668
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc----ccc--CCHHH
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM----SIQ--TSPEV 200 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~----~~~--l~~~e 200 (217)
.||||++.+++...+.....+. -..+.+.=+.......-.+|+|||++||+.|..+|..|.... ++. ++-.+
T Consensus 401 ~RPVplErHlvf~~~e~eK~~i--i~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~e 478 (830)
T COG1202 401 ERPVPLERHLVFARNESEKWDI--IARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKE 478 (830)
T ss_pred CCCCChhHeeeeecCchHHHHH--HHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHH
Confidence 9999999998765432111111 000111001111111224799999999999999999997443 332 56667
Q ss_pred HHHHHHHHh
Q psy3103 201 REIVDKCMS 209 (217)
Q Consensus 201 ~~~l~~~~~ 209 (217)
+..++...+
T Consensus 479 Rk~vE~~F~ 487 (830)
T COG1202 479 RKSVERAFA 487 (830)
T ss_pred HHHHHHHHh
Confidence 777666544
No 7
>KOG0947|consensus
Probab=99.81 E-value=2.1e-20 Score=176.17 Aligned_cols=152 Identities=22% Similarity=0.295 Sum_probs=113.1
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
.+++++.+ ||+||+|+++|.+||.+||.+|--| +.++++|+||||+||+.+||+|+|..+...++++...
T Consensus 399 dliRDvE~-VIFDEVHYiND~eRGvVWEEViIMl---------P~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~ 468 (1248)
T KOG0947|consen 399 DLIRDVEF-VIFDEVHYINDVERGVVWEEVIIML---------PRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTS 468 (1248)
T ss_pred chhhccce-EEEeeeeecccccccccceeeeeec---------cccceEEEEeccCCChHHHHHHhhhccCceEEEEecC
Confidence 56789999 9999999999999999999998643 8999999999999999999999999887888899999
Q ss_pred CccccceeEEEe----ec---CC------------CCC---chhHH---------HH-----------Hh----------
Q psy3103 127 FRPVKLTKIVRG----FP---TK------------PSQ---STFQF---------EM-----------ML---------- 154 (217)
Q Consensus 127 ~Rp~~l~~~~~~----~~---~~------------~~~---~~~~~---------~~-----------~~---------- 154 (217)
.||||++++++. ++ .. ... ..+.. +. ..
T Consensus 469 kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~n 548 (1248)
T KOG0947|consen 469 KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKN 548 (1248)
T ss_pred CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCccccccccc
Confidence 999999998872 11 00 000 00000 00 00
Q ss_pred -h--HHHHHHHHHh--cCCCCeEEEeCChhHHHHHHHHHHHhccccCCHHHHHHHHHHHhh
Q psy3103 155 -S--YKLKSIIMQY--SDNKPTLIFCATRKGVEHTCTILRQEMSIQTSPEVREIVDKCMSN 210 (217)
Q Consensus 155 -~--~~~~~~~~~~--~~~~~~LVF~~sRk~~e~~A~~l~~~~~~~l~~~e~~~l~~~~~~ 210 (217)
. .....++..+ ++--|++|||+||+.|+..|+.+... + +.+..|+.++.-++++
T Consensus 549 rr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~-n-L~~~~EKseV~lfl~k 607 (1248)
T KOG0947|consen 549 RRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNL-N-LTDSKEKSEVHLFLSK 607 (1248)
T ss_pred ccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhcc-C-cccchhHHHHHHHHHH
Confidence 0 0123334333 33569999999999999999999855 2 3566677787777665
No 8
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=2.1e-19 Score=173.44 Aligned_cols=135 Identities=24% Similarity=0.350 Sum_probs=100.9
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
.+++.+.+ ||+||+|+|+|.+||.+||.++.-+ +.++|+|+||||+||+.+|++|++......++++..+
T Consensus 225 ~~~~~i~~-ViFDEvHyi~D~eRG~VWEE~Ii~l---------P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~ 294 (1041)
T COG4581 225 ESLRDIEW-VVFDEVHYIGDRERGVVWEEVIILL---------PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTE 294 (1041)
T ss_pred ccccccce-EEEEeeeeccccccchhHHHHHHhc---------CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeec
Confidence 56779999 9999999999999999999998643 7899999999999999999999997666777889999
Q ss_pred CccccceeEEEe-------ecCCCCC--chhHHH--HHh-------------------h-----------HHHHHHHHHh
Q psy3103 127 FRPVKLTKIVRG-------FPTKPSQ--STFQFE--MML-------------------S-----------YKLKSIIMQY 165 (217)
Q Consensus 127 ~Rp~~l~~~~~~-------~~~~~~~--~~~~~~--~~~-------------------~-----------~~~~~~~~~~ 165 (217)
+||+|+.++++. ++++.+. ..++.. ... . ..-..++..+
T Consensus 295 ~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l 374 (1041)
T COG4581 295 HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKL 374 (1041)
T ss_pred CCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhh
Confidence 999999998873 2222110 000000 000 0 0002233322
Q ss_pred --cCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 166 --SDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 166 --~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+.-|+|+|+.||+.|+..|..+...
T Consensus 375 ~~~~~lP~I~F~FSr~~Ce~~a~~~~~l 402 (1041)
T COG4581 375 DKDNLLPAIVFSFSRRGCEEAAQILSTL 402 (1041)
T ss_pred hhhcCCceEEEEEchhhHHHHHHHhccc
Confidence 34679999999999999999999754
No 9
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.80 E-value=6.5e-19 Score=167.52 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=109.3
Q ss_pred HHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCC-CCeeeecC
Q psy3103 46 TIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGK-PTVYAQID 124 (217)
Q Consensus 46 ~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~-~~~~~~~~ 124 (217)
+..|.+|++ ||+||+|.+.+++||.++...+.||+.++ +.+|.||||||+++++++++||+... +..+...
T Consensus 144 r~~l~~vr~-VIVDEiHel~~sKRG~~Lsl~LeRL~~l~------~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~- 215 (814)
T COG1201 144 RELLRDVRY-VIVDEIHALAESKRGVQLALSLERLRELA------GDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDV- 215 (814)
T ss_pred HHHhcCCcE-EEeehhhhhhccccchhhhhhHHHHHhhC------cccEEEeehhccCCHHHHHHHhcCCCCceEEEEc-
Confidence 588999999 99999999999999999999999999884 49999999999999999999998764 3333222
Q ss_pred CCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc--cc--cCCHHH
Q psy3103 125 DSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM--SI--QTSPEV 200 (217)
Q Consensus 125 ~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~--~~--~l~~~e 200 (217)
+..++..++......+... . .......+..+.+.+++.+++|||+|||.+||.++..|.+.. +. ..++-.
T Consensus 216 ~~~k~~~i~v~~p~~~~~~-~-----~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlS 289 (814)
T COG1201 216 SAAKKLEIKVISPVEDLIY-D-----EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLS 289 (814)
T ss_pred ccCCcceEEEEecCCcccc-c-----cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeeccccc
Confidence 2234333332221111000 0 011123455566667777899999999999999999998875 11 122333
Q ss_pred HHHHHHHHhhccCCCCC
Q psy3103 201 REIVDKCMSNMMDNKLK 217 (217)
Q Consensus 201 ~~~l~~~~~~i~d~~lk 217 (217)
+++..+..++++.+.||
T Consensus 290 re~R~~vE~~lk~G~lr 306 (814)
T COG1201 290 RELRLEVEERLKEGELK 306 (814)
T ss_pred HHHHHHHHHHHhcCCce
Confidence 34444455555566664
No 10
>PRK01172 ski2-like helicase; Provisional
Probab=99.78 E-value=1.9e-18 Score=164.35 Aligned_cols=140 Identities=26% Similarity=0.332 Sum_probs=103.9
Q ss_pred cccCCChhHHHH-------HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHH
Q psy3103 36 HHAGMSPEDRTI-------IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDI 108 (217)
Q Consensus 36 ~h~~l~~~~~~~-------~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~ 108 (217)
+..+.|++++.. +++++++ ||+||+|+++++.||..+|.++++++++ .++.|+|+||||++|++++
T Consensus 113 dIiv~Tpek~~~l~~~~~~~l~~v~l-vViDEaH~l~d~~rg~~le~ll~~~~~~------~~~~riI~lSATl~n~~~l 185 (674)
T PRK01172 113 DVVILTSEKADSLIHHDPYIINDVGL-IVADEIHIIGDEDRGPTLETVLSSARYV------NPDARILALSATVSNANEL 185 (674)
T ss_pred CEEEECHHHHHHHHhCChhHHhhcCE-EEEecchhccCCCccHHHHHHHHHHHhc------CcCCcEEEEeCccCCHHHH
Confidence 445567876653 4778999 9999999999999999999999998766 5789999999999999999
Q ss_pred HhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHH
Q psy3103 109 ALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTIL 188 (217)
Q Consensus 109 a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l 188 (217)
++|+++. .+.+.+||+|++..+.......... . .+.. ......+.+...+++++||||+||+.|+.+|..+
T Consensus 186 a~wl~~~------~~~~~~r~vpl~~~i~~~~~~~~~~-~-~~~~-~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L 256 (674)
T PRK01172 186 AQWLNAS------LIKSNFRPVPLKLGILYRKRLILDG-Y-ERSQ-VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEML 256 (674)
T ss_pred HHHhCCC------ccCCCCCCCCeEEEEEecCeeeecc-c-cccc-ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHH
Confidence 9999976 4678899999987655322110000 0 0000 0111122233467889999999999999999998
Q ss_pred HHh
Q psy3103 189 RQE 191 (217)
Q Consensus 189 ~~~ 191 (217)
...
T Consensus 257 ~~~ 259 (674)
T PRK01172 257 IQH 259 (674)
T ss_pred HHh
Confidence 765
No 11
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.78 E-value=1.2e-18 Score=174.42 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=97.0
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
.+++++++ |||||+|.|.+.+||.+++.+++||+.++ +.++|+||||||++|++++++||+...+..+ +..+.
T Consensus 120 ~~L~~Vr~-VIVDE~H~L~g~kRG~~Lel~LeRL~~l~-----~~~~QrIgLSATI~n~eevA~~L~g~~pv~I-v~~~~ 192 (1490)
T PRK09751 120 ETLRGVET-VIIDEVHAVAGSKRGAHLALSLERLDALL-----HTSAQRIGLSATVRSASDVAAFLGGDRPVTV-VNPPA 192 (1490)
T ss_pred hhhccCCE-EEEecHHHhcccccccHHHHHHHHHHHhC-----CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEE-ECCCC
Confidence 46889999 99999999999899999999999998774 5789999999999999999999987543333 22445
Q ss_pred CccccceeEEEeecCCC-C-------CchhHH-HHHhhHH-HHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 FRPVKLTKIVRGFPTKP-S-------QSTFQF-EMMLSYK-LKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~-~-------~~~~~~-~~~~~~~-~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.++.+++..+...+... . ...... ...+... ...++..+..+.++|||||||+.||.++..|.+.
T Consensus 193 ~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~ 267 (1490)
T PRK09751 193 MRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNEL 267 (1490)
T ss_pred CcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHh
Confidence 67766654433211000 0 000000 0111111 1234455556789999999999999999998754
No 12
>PRK00254 ski2-like helicase; Provisional
Probab=99.77 E-value=2.3e-18 Score=164.86 Aligned_cols=136 Identities=24% Similarity=0.303 Sum_probs=98.5
Q ss_pred cCCChhHHHH-------HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHh
Q psy3103 38 AGMSPEDRTI-------IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIAL 110 (217)
Q Consensus 38 ~~l~~~~~~~-------~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~ 110 (217)
.+.|++++.. +++++++ ||+||+|++++.+||..+|.+++++ ..++|+|+||||++|++++++
T Consensus 118 iV~Tpe~~~~ll~~~~~~l~~l~l-vViDE~H~l~~~~rg~~le~il~~l---------~~~~qiI~lSATl~n~~~la~ 187 (720)
T PRK00254 118 IIATAEKFDSLLRHGSSWIKDVKL-VVADEIHLIGSYDRGATLEMILTHM---------LGRAQILGLSATVGNAEELAE 187 (720)
T ss_pred EEEcHHHHHHHHhCCchhhhcCCE-EEEcCcCccCCccchHHHHHHHHhc---------CcCCcEEEEEccCCCHHHHHH
Confidence 3457776653 4678999 9999999999989999999999885 367899999999999999999
Q ss_pred hhcCCCCCeeeecCCCCccccceeEEE--eecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHH
Q psy3103 111 WLGFGKPTVYAQIDDSFRPVKLTKIVR--GFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTIL 188 (217)
Q Consensus 111 wL~~~~~~~~~~~~~~~Rp~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l 188 (217)
|+++. .+.+++||+++...++ ++..............+. ..+.+.+..++++||||+||+.|+.+|..+
T Consensus 188 wl~~~------~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l 258 (720)
T PRK00254 188 WLNAE------LVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWE---SLVYDAVKKGKGALVFVNTRRSAEKEALEL 258 (720)
T ss_pred HhCCc------cccCCCCCCcceeeEecCCeeeccCcchhcchHHHH---HHHHHHHHhCCCEEEEEcChHHHHHHHHHH
Confidence 99976 4567899999865433 111110000000001111 222334456889999999999999999888
Q ss_pred HHhc
Q psy3103 189 RQEM 192 (217)
Q Consensus 189 ~~~~ 192 (217)
.+.+
T Consensus 259 ~~~~ 262 (720)
T PRK00254 259 AKKI 262 (720)
T ss_pred HHHH
Confidence 7654
No 13
>KOG0950|consensus
Probab=99.69 E-value=2.1e-17 Score=156.38 Aligned_cols=134 Identities=19% Similarity=0.376 Sum_probs=99.0
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCc
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
+..+++ ||+||.|+++|.+||..+|.+++++.+.++ ...+|+||+|||++|..+++.||.+. ++...+|
T Consensus 339 ~~~~g~-vvVdElhmi~d~~rg~~lE~~l~k~~y~~~----~~~~~iIGMSATi~N~~lL~~~L~A~------~y~t~fR 407 (1008)
T KOG0950|consen 339 LDFLGM-VVVDELHMIGDKGRGAILELLLAKILYENL----ETSVQIIGMSATIPNNSLLQDWLDAF------VYTTRFR 407 (1008)
T ss_pred ccccCc-EEEeeeeeeeccccchHHHHHHHHHHHhcc----ccceeEeeeecccCChHHHHHHhhhh------heecccC
Confidence 447899 999999999999999999999999988752 23378999999999999999999975 6778899
Q ss_pred cccceeEEE-eecCCCCCchhHHHHHh----------h-HH-HHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhcc
Q psy3103 129 PVKLTKIVR-GFPTKPSQSTFQFEMML----------S-YK-LKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEMS 193 (217)
Q Consensus 129 p~~l~~~~~-~~~~~~~~~~~~~~~~~----------~-~~-~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~~ 193 (217)
|||+..++. |.........-..+... + +. +..+.+.+.++.++||||++|++||.+|..+....+
T Consensus 408 Pv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vp 485 (1008)
T KOG0950|consen 408 PVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVP 485 (1008)
T ss_pred cccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhh
Confidence 999988765 22211110000000000 0 11 222344566788899999999999999988877663
No 14
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.66 E-value=6.7e-16 Score=150.50 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=90.3
Q ss_pred HHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCC----CCeee
Q psy3103 46 TIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGK----PTVYA 121 (217)
Q Consensus 46 ~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~----~~~~~ 121 (217)
+..++++++ ||+||+|.+.+++||.+++.++.||+.+. .+.+|+|+||||++|++++++|++... +..+.
T Consensus 167 ~~~l~~l~~-VVIDE~H~l~~~~RG~~l~~~L~rL~~l~-----~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~ 240 (876)
T PRK13767 167 REKLRTVKW-VIVDEIHSLAENKRGVHLSLSLERLEELA-----GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCE 240 (876)
T ss_pred HHHHhcCCE-EEEechhhhccCccHHHHHHHHHHHHHhc-----CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceE
Confidence 356789999 99999999999999999999999998774 468999999999999999999997531 11111
Q ss_pred ecCCC-CccccceeEEEeecCCCCCchhHHHHHhhHH-HHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 122 QIDDS-FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYK-LKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 122 ~~~~~-~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+... .++..+... .+... .... ........ ...+.+.+..++++|||||||+.|+.++..|.+.
T Consensus 241 iv~~~~~k~~~i~v~---~p~~~-l~~~-~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 241 IVDARFVKPFDIKVI---SPVDD-LIHT-PAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred EEccCCCccceEEEe---ccCcc-cccc-ccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 22221 222222211 11000 0000 00011112 2233344566889999999999999999999874
No 15
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.66 E-value=2.1e-15 Score=144.73 Aligned_cols=142 Identities=17% Similarity=0.109 Sum_probs=97.0
Q ss_pred hHHHHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeee
Q psy3103 43 EDRTIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQ 122 (217)
Q Consensus 43 ~~~~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~ 122 (217)
.+|+.+++++++ ||+||+|.+.+ .+|.+++.++.||++++ .+.+.++|++++|||++|+.++++|+...+ +..
T Consensus 149 ~~~~~~l~~l~~-vViDEah~~~g-~fg~~~~~il~rL~ri~--~~~g~~~q~i~~SATi~n~~~~~~~l~g~~---~~~ 221 (742)
T TIGR03817 149 ARWARFLRRLRY-VVIDECHSYRG-VFGSHVALVLRRLRRLC--ARYGASPVFVLASATTADPAAAASRLIGAP---VVA 221 (742)
T ss_pred hHHHHHHhcCCE-EEEeChhhccC-ccHHHHHHHHHHHHHHH--HhcCCCCEEEEEecCCCCHHHHHHHHcCCC---eEE
Confidence 467788999999 99999999987 59999999999998886 455678999999999999999998886543 224
Q ss_pred cCCCCccccceeEEEeecCCC---CCchhHHH-HHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 123 IDDSFRPVKLTKIVRGFPTKP---SQSTFQFE-MMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 123 ~~~~~Rp~~l~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
+..+..|..........+... .......+ .........+...+..+.++||||+||+.||.++..+.+.
T Consensus 222 i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~ 294 (742)
T TIGR03817 222 VTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRL 294 (742)
T ss_pred ECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 455555544332222111100 00000000 0001222333334456789999999999999999988764
No 16
>KOG0952|consensus
Probab=99.65 E-value=1.7e-17 Score=157.98 Aligned_cols=167 Identities=29% Similarity=0.417 Sum_probs=140.8
Q ss_pred CChhHH---------HHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHh
Q psy3103 40 MSPEDR---------TIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIAL 110 (217)
Q Consensus 40 l~~~~~---------~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~ 110 (217)
+|+++| +++++++++ +|+||+|.+++ +||+++|.+.+|+.+++ .+.++.+|+++||.-+.|..++++
T Consensus 1026 ttpek~dgi~Rsw~~r~~v~~v~~-iv~de~hllg~-~rgPVle~ivsr~n~~s--~~t~~~vr~~glsta~~na~dla~ 1101 (1230)
T KOG0952|consen 1026 TTPEKWDGISRSWQTRKYVQSVSL-IVLDEIHLLGE-DRGPVLEVIVSRMNYIS--SQTEEPVRYLGLSTALANANDLAD 1101 (1230)
T ss_pred cccccccCccccccchhhhccccc-eeecccccccC-CCcceEEEEeeccccCc--cccCcchhhhhHhhhhhccHHHHH
Confidence 366666 477779999 99999999998 59999999999998755 677889999999999999999999
Q ss_pred hhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHH
Q psy3103 111 WLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQ 190 (217)
Q Consensus 111 wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~ 190 (217)
||+..+. ++|.++-||+|++.++.+||...+-+ -...+++|..++++..+..+|+|||+.+|+++...|..+..
T Consensus 1102 wl~~~~~---~nf~~svrpvp~~~~i~gfp~~~~cp---rm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~ 1175 (1230)
T KOG0952|consen 1102 WLNIKDM---YNFRPSVRPVPLEVHIDGFPGQHYCP---RMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIA 1175 (1230)
T ss_pred HhCCCCc---CCCCcccccCCceEeecCCCchhcch---hhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHh
Confidence 9998763 58899999999999999998743212 23456788999999999999999999999999999998887
Q ss_pred hc------cccCCHHHHHHHHHHHhhccCCCCC
Q psy3103 191 EM------SIQTSPEVREIVDKCMSNMMDNKLK 217 (217)
Q Consensus 191 ~~------~~~l~~~e~~~l~~~~~~i~d~~lk 217 (217)
.+ .-++... ..+++..+.+++|.+||
T Consensus 1176 ~~~~~~~p~~fl~~d-e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1176 SCATEDNPKQFLNMD-ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred hccCCCCchhccCCC-HHHHHHHHHHhcccchh
Confidence 66 1124444 46899999999999997
No 17
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.49 E-value=3.2e-13 Score=130.91 Aligned_cols=140 Identities=19% Similarity=0.139 Sum_probs=98.5
Q ss_pred hHHHHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeee
Q psy3103 43 EDRTIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQ 122 (217)
Q Consensus 43 ~~~~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~ 122 (217)
..|..+++++++ ||+||+|.|.+ .+|+++..++.||+.++ ...+.++|+|+.|||++|+.++++-+....... .
T Consensus 187 ~~~~~~~~~Lk~-lVvDElHtYrG-v~GS~vA~llRRL~~~~--~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~--~ 260 (851)
T COG1205 187 DAWLWLLRNLKY-LVVDELHTYRG-VQGSEVALLLRRLLRRL--RRYGSPLQIICTSATLANPGEFAEELFGRDFEV--P 260 (851)
T ss_pred chHHHHHhcCcE-EEEecceeccc-cchhHHHHHHHHHHHHH--hccCCCceEEEEeccccChHHHHHHhcCCccee--e
Confidence 488899999999 99999999998 59999999999999886 667789999999999999999888775432111 1
Q ss_pred cCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHH
Q psy3103 123 IDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTIL 188 (217)
Q Consensus 123 ~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l 188 (217)
+..+..|-.....+...++...................+...+.++.++|+|+.||+.+|.++...
T Consensus 261 v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~ 326 (851)
T COG1205 261 VDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSP 326 (851)
T ss_pred ccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhch
Confidence 556666666655544433221111100001111111222335678999999999999999997433
No 18
>KOG0951|consensus
Probab=99.38 E-value=1.6e-13 Score=133.07 Aligned_cols=159 Identities=23% Similarity=0.330 Sum_probs=125.9
Q ss_pred HhhhhcChHHHHHhhhhheecccCCChhHHHH--HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCc
Q psy3103 16 CMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTI--IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPI 93 (217)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~h~~l~~~~~~~--~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~ 93 (217)
-++.+.|.+|..+=++++. ||++|.. ..+.+.+ .|.||+|++++ .-|+.+|.+++ +|+++ +|..+++
T Consensus 1222 ~ge~s~~lkl~~~~~vii~------tpe~~d~lq~iQ~v~l-~i~d~lh~igg-~~g~v~evi~S-~r~ia--~q~~k~i 1290 (1674)
T KOG0951|consen 1222 TGETSLDLKLLQKGQVIIS------TPEQWDLLQSIQQVDL-FIVDELHLIGG-VYGAVYEVICS-MRYIA--SQLEKKI 1290 (1674)
T ss_pred CCccccchHHhhhcceEEe------chhHHHHHhhhhhcce-Eeeehhhhhcc-cCCceEEEEee-HHHHH--HHHHhhe
Confidence 3467778777777666555 4456643 6789999 99999999995 79999999999 99998 7889999
Q ss_pred eEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHH-HHHHHHHhcCCCCeE
Q psy3103 94 RFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYK-LKSIIMQYSDNKPTL 172 (217)
Q Consensus 94 riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L 172 (217)
|+|+||..+.|+.++ +|+.+ ..+++|.++.||+|+..++.+++..+....+ ..+.++ +..+.....+++|++
T Consensus 1291 r~v~ls~~lana~d~---ig~s~-~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~---~am~~~~~~ai~~~a~~~k~~~ 1363 (1674)
T KOG0951|consen 1291 RVVALSSSLANARDL---IGASS-SGVFNFSPSVRPVPLEIHIQSVDISHFESRM---LAMTKPTYTAIVRHAGNRKPAI 1363 (1674)
T ss_pred eEEEeehhhccchhh---ccccc-cceeecCcccCCCceeEEEEEeccchhHHHH---HHhhhhHHHHHHHHhcCCCCeE
Confidence 999999999999999 77765 4567999999999999999998865432211 122344 344444456789999
Q ss_pred EEeCChhHHHHHHHHHHHhc
Q psy3103 173 IFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 173 VF~~sRk~~e~~A~~l~~~~ 192 (217)
||+++||.|..+|..+...+
T Consensus 1364 vf~p~rk~~~~~a~~~~~~s 1383 (1674)
T KOG0951|consen 1364 VFLPTRKHARLVAVDLVTFS 1383 (1674)
T ss_pred EEeccchhhhhhhhccchhh
Confidence 99999999999998887665
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.20 E-value=1.1e-10 Score=106.45 Aligned_cols=121 Identities=11% Similarity=0.175 Sum_probs=81.2
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
++++++ ||+||+|.+.+.+++..++.++.++ +...|++++|||+++ ...++..+..++ ..+ .+....
T Consensus 145 l~~l~~-lViDEad~~l~~g~~~~l~~i~~~~---------~~~~q~ll~SAT~~~~~~~l~~~~~~~~-~~i-~~~~~~ 212 (460)
T PRK11776 145 LDALNT-LVLDEADRMLDMGFQDAIDAIIRQA---------PARRQTLLFSATYPEGIAAISQRFQRDP-VEV-KVESTH 212 (460)
T ss_pred HHHCCE-EEEECHHHHhCcCcHHHHHHHHHhC---------CcccEEEEEEecCcHHHHHHHHHhcCCC-EEE-EECcCC
Confidence 678999 9999999999988888888777653 677899999999984 456666654443 122 233333
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
....+.++++..+... . ...+..++.. ....++||||+|++.|+.++..|....
T Consensus 213 ~~~~i~~~~~~~~~~~---k-------~~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~~ 266 (460)
T PRK11776 213 DLPAIEQRFYEVSPDE---R-------LPALQRLLLH-HQPESCVVFCNTKKECQEVADALNAQG 266 (460)
T ss_pred CCCCeeEEEEEeCcHH---H-------HHHHHHHHHh-cCCCceEEEECCHHHHHHHHHHHHhCC
Confidence 3334555554433211 0 1223333322 235689999999999999999998654
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.11 E-value=2.6e-10 Score=104.09 Aligned_cols=122 Identities=15% Similarity=0.093 Sum_probs=77.2
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
.++++++ ||+||+|.+.+.++...++.++.++ +...|++++|||+++ ..+++.++..++. .+......
T Consensus 146 ~l~~v~~-lViDEah~ll~~~~~~~i~~il~~l---------~~~~q~l~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~ 214 (456)
T PRK10590 146 KLDQVEI-LVLDEADRMLDMGFIHDIRRVLAKL---------PAKRQNLLFSATFSDDIKALAEKLLHNPL-EIEVARRN 214 (456)
T ss_pred ccccceE-EEeecHHHHhccccHHHHHHHHHhC---------CccCeEEEEeCCCcHHHHHHHHHHcCCCe-EEEEeccc
Confidence 3678999 9999999999877777766665542 577899999999996 6778888765542 11121112
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..+..+.+++...+.. + ....+..++.. ....++||||+|+..|+.++..|.+.
T Consensus 215 ~~~~~i~~~~~~~~~~----~------k~~~l~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~ 268 (456)
T PRK10590 215 TASEQVTQHVHFVDKK----R------KRELLSQMIGK-GNWQQVLVFTRTKHGANHLAEQLNKD 268 (456)
T ss_pred ccccceeEEEEEcCHH----H------HHHHHHHHHHc-CCCCcEEEEcCcHHHHHHHHHHHHHC
Confidence 2222233332222110 0 01112222221 23568999999999999999999764
No 21
>PTZ00110 helicase; Provisional
Probab=99.11 E-value=4.9e-10 Score=104.56 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=76.6
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
++++++ ||+||+|.+.+.++...+..++.++ .+..|++++|||++. ...+++++-...+..+ .+....
T Consensus 275 l~~v~~-lViDEAd~mld~gf~~~i~~il~~~---------~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i-~vg~~~ 343 (545)
T PTZ00110 275 LRRVTY-LVLDEADRMLDMGFEPQIRKIVSQI---------RPDRQTLMWSATWPKEVQSLARDLCKEEPVHV-NVGSLD 343 (545)
T ss_pred hhhCcE-EEeehHHhhhhcchHHHHHHHHHhC---------CCCCeEEEEEeCCCHHHHHHHHHHhccCCEEE-EECCCc
Confidence 678999 9999999999987777777666543 577899999999984 5667777653221111 111110
Q ss_pred -c-cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHh-cCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 128 -R-PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQY-SDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 128 -R-p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
. ...+.+.+...+.. .. ...+..++..+ ..+.++||||+|++.|+.++..|...
T Consensus 344 l~~~~~i~q~~~~~~~~---~k-------~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~ 400 (545)
T PTZ00110 344 LTACHNIKQEVFVVEEH---EK-------RGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD 400 (545)
T ss_pred cccCCCeeEEEEEEech---hH-------HHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc
Confidence 0 11122222222211 00 11233334333 25789999999999999999999754
No 22
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.04 E-value=8e-10 Score=101.35 Aligned_cols=125 Identities=10% Similarity=0.100 Sum_probs=74.5
Q ss_pred HHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC-CHHHHHhhhcCCCCCeeeecC
Q psy3103 46 TIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP-NIYDIALWLGFGKPTVYAQID 124 (217)
Q Consensus 46 ~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~-n~~~~a~wL~~~~~~~~~~~~ 124 (217)
..+++++++ |||||+|.+.+.++...+..++..+ ......|++++|||++ +...+++++..++ ..+.+.
T Consensus 232 ~~~l~~l~~-lViDEah~l~~~~~~~~l~~i~~~~-------~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~--~~v~~~ 301 (475)
T PRK01297 232 EVHLDMVEV-MVLDEADRMLDMGFIPQVRQIIRQT-------PRKEERQTLLFSATFTDDVMNLAKQWTTDP--AIVEIE 301 (475)
T ss_pred CcccccCce-EEechHHHHHhcccHHHHHHHHHhC-------CCCCCceEEEEEeecCHHHHHHHHHhccCC--EEEEec
Confidence 345778999 9999999999866666555554432 1123579999999987 5666766655443 111222
Q ss_pred CCC-ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 125 DSF-RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 125 ~~~-Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
... ....+.++++..... .. ...+..++.. ....++||||++++.|+.++..+...
T Consensus 302 ~~~~~~~~~~~~~~~~~~~---~k-------~~~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~~ 358 (475)
T PRK01297 302 PENVASDTVEQHVYAVAGS---DK-------YKLLYNLVTQ-NPWERVMVFANRKDEVRRIEERLVKD 358 (475)
T ss_pred cCcCCCCcccEEEEEecch---hH-------HHHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 211 111223333332211 11 1112222222 23568999999999999999999755
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.03 E-value=1.7e-09 Score=100.35 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=81.6
Q ss_pred ecccCCChhHHHHH-------HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HH
Q psy3103 35 YHHAGMSPEDRTII-------EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IY 106 (217)
Q Consensus 35 ~~h~~l~~~~~~~~-------l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~ 106 (217)
++-.+.||+..-.+ ++++++ ||+||+|.+.+.++...+..++.. -+..|++++|||+++ .+
T Consensus 247 ~~IiV~TPgrL~~~l~~~~~~l~~v~~-lViDEad~ml~~gf~~~i~~i~~~----------l~~~q~l~~SATl~~~v~ 315 (518)
T PLN00206 247 VELIVGTPGRLIDLLSKHDIELDNVSV-LVLDEVDCMLERGFRDQVMQIFQA----------LSQPQVLLFSATVSPEVE 315 (518)
T ss_pred CCEEEECHHHHHHHHHcCCccchheeE-EEeecHHHHhhcchHHHHHHHHHh----------CCCCcEEEEEeeCCHHHH
Confidence 44455577654333 668999 999999999986666655554443 256899999999985 56
Q ss_pred HHHhhhcCCCCCeeeecCCCCcccc-ceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhc-CCCCeEEEeCChhHHHHH
Q psy3103 107 DIALWLGFGKPTVYAQIDDSFRPVK-LTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYS-DNKPTLIFCATRKGVEHT 184 (217)
Q Consensus 107 ~~a~wL~~~~~~~~~~~~~~~Rp~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~LVF~~sRk~~e~~ 184 (217)
.++.++..+. ....+....++.. +.+.+...+.. .. ...+..++.... ...++||||+||..|+.+
T Consensus 316 ~l~~~~~~~~--~~i~~~~~~~~~~~v~q~~~~~~~~---~k-------~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l 383 (518)
T PLN00206 316 KFASSLAKDI--ILISIGNPNRPNKAVKQLAIWVETK---QK-------KQKLFDILKSKQHFKPPAVVFVSSRLGADLL 383 (518)
T ss_pred HHHHHhCCCC--EEEEeCCCCCCCcceeEEEEeccch---hH-------HHHHHHHHHhhcccCCCEEEEcCCchhHHHH
Confidence 6888876553 2223333333322 22222222211 00 112233333222 245899999999999999
Q ss_pred HHHHHHh
Q psy3103 185 CTILRQE 191 (217)
Q Consensus 185 A~~l~~~ 191 (217)
+..+...
T Consensus 384 ~~~L~~~ 390 (518)
T PLN00206 384 ANAITVV 390 (518)
T ss_pred HHHHhhc
Confidence 9998753
No 24
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.02 E-value=3.7e-09 Score=93.20 Aligned_cols=142 Identities=11% Similarity=0.092 Sum_probs=76.8
Q ss_pred hhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCccc-c
Q psy3103 53 RSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFRPV-K 131 (217)
Q Consensus 53 ~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~Rp~-~ 131 (217)
++ ||+||+|.+.+..+|. +..++..+. ..+.|++++|||+| +.+.+|+........ .......+. .
T Consensus 126 ~~-iViDE~h~~~~~~~~~-l~~~l~~l~--------~~~~~~i~~SATlp--~~l~~~~~~~~~~~~-~~~~~~~~~~~ 192 (358)
T TIGR01587 126 SL-LIFDEVHFYDEYTLAL-ILAVLEVLK--------DNDVPILLMSATLP--KFLKEYAEKIGYVEF-NEPLDLKEERR 192 (358)
T ss_pred CE-EEEeCCCCCCHHHHHH-HHHHHHHHH--------HcCCCEEEEecCch--HHHHHHHhcCCCccc-ccCCCCccccc
Confidence 78 9999999999865554 444444432 35789999999998 446666532210000 000000000 0
Q ss_pred c-eeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhccc--------cCCHHHHH
Q psy3103 132 L-TKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEMSI--------QTSPEVRE 202 (217)
Q Consensus 132 l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~~~--------~l~~~e~~ 202 (217)
. .+.+....... ... ...+..++.....++++||||+|++.|+.++..|.+.... .+++.+++
T Consensus 193 ~~~~~~~~~~~~~-~~~-------~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~ 264 (358)
T TIGR01587 193 FERHRFIKIESDK-VGE-------ISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRA 264 (358)
T ss_pred cccccceeecccc-ccC-------HHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHH
Confidence 0 01111011100 000 1123334445556889999999999999999999775421 13455665
Q ss_pred HH-HHHHhhccCCC
Q psy3103 203 IV-DKCMSNMMDNK 215 (217)
Q Consensus 203 ~l-~~~~~~i~d~~ 215 (217)
.. .+.++..++++
T Consensus 265 ~~~~~~~~~f~~~~ 278 (358)
T TIGR01587 265 KKEAELLEEMKKNE 278 (358)
T ss_pred HHHHHHHHHhcCCC
Confidence 44 34455554443
No 25
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=2e-09 Score=98.75 Aligned_cols=139 Identities=19% Similarity=0.184 Sum_probs=82.9
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH--HHHHhhhcCCCCCeeeecCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI--YDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~--~~~a~wL~~~~~~~~~~~~~~ 126 (217)
..++.+ |||||+|.+.+ +|..+...+.+|..+. ...+..++++||||.++. .++.++++...+.. ...+.
T Consensus 125 ~~~i~~-iViDEaH~i~~--~g~~fr~~~~~l~~l~---~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~--~~~s~ 196 (470)
T TIGR00614 125 RKGITL-IAVDEAHCISQ--WGHDFRPDYKALGSLK---QKFPNVPIMALTATASPSVREDILRQLNLKNPQI--FCTSF 196 (470)
T ss_pred cCCcCE-EEEeCCcccCc--cccccHHHHHHHHHHH---HHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcE--EeCCC
Confidence 457899 99999999985 6766666655554332 224678999999999864 67889988654322 11222
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc----cc--cCCHHH
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM----SI--QTSPEV 200 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~----~~--~l~~~e 200 (217)
.|| .+...+. ... ... ...+...+.....++.+||||+|++.|+.++..|.+.. .+ .+++++
T Consensus 197 ~r~-nl~~~v~---~~~--~~~------~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~e 264 (470)
T TIGR00614 197 DRP-NLYYEVR---RKT--PKI------LEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISA 264 (470)
T ss_pred CCC-CcEEEEE---eCC--ccH------HHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHH
Confidence 233 2222211 111 000 11122222222346677999999999999999997653 11 135666
Q ss_pred HHHHHHH
Q psy3103 201 REIVDKC 207 (217)
Q Consensus 201 ~~~l~~~ 207 (217)
|+++.+.
T Consensus 265 R~~i~~~ 271 (470)
T TIGR00614 265 RDDVHHK 271 (470)
T ss_pred HHHHHHH
Confidence 6554443
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.99 E-value=3.8e-09 Score=95.71 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=76.5
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC--HHHHHhhhcCCCCCeeeecCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN--IYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n--~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
++++++ ||+||+|.+.+.+++..++.+...+ ....|++++|||+++ ..++++|+..++. .+ ...+.
T Consensus 145 ~~~v~~-lViDEah~~l~~~~~~~~~~i~~~~---------~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~-~i-~~~~~ 212 (434)
T PRK11192 145 CRAVET-LILDEADRMLDMGFAQDIETIAAET---------RWRKQTLLFSATLEGDAVQDFAERLLNDPV-EV-EAEPS 212 (434)
T ss_pred cccCCE-EEEECHHHHhCCCcHHHHHHHHHhC---------ccccEEEEEEeecCHHHHHHHHHHHccCCE-EE-EecCC
Confidence 567899 9999999999988888888776553 456799999999974 6889999876541 11 22222
Q ss_pred Cccc-cceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 FRPV-KLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 ~Rp~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+.. .+.+.+...+.. .. ....+..++.. ....++||||+|+..|+.++..|...
T Consensus 213 ~~~~~~i~~~~~~~~~~----~~-----k~~~l~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~ 268 (434)
T PRK11192 213 RRERKKIHQWYYRADDL----EH-----KTALLCHLLKQ-PEVTRSIVFVRTRERVHELAGWLRKA 268 (434)
T ss_pred cccccCceEEEEEeCCH----HH-----HHHHHHHHHhc-CCCCeEEEEeCChHHHHHHHHHHHhC
Confidence 1111 122222211110 00 01112222221 23578999999999999999999764
No 27
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.96 E-value=4.2e-09 Score=99.74 Aligned_cols=121 Identities=11% Similarity=0.043 Sum_probs=74.9
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
++++++ ||+||+|.+.+..+...++.++..+ +...|++++|||+|+ ...++..+..++. .+.......
T Consensus 147 l~~l~~-lVlDEAd~ml~~gf~~di~~Il~~l---------p~~~q~llfSAT~p~~i~~i~~~~l~~~~-~i~i~~~~~ 215 (629)
T PRK11634 147 LSKLSG-LVLDEADEMLRMGFIEDVETIMAQI---------PEGHQTALFSATMPEAIRRITRRFMKEPQ-EVRIQSSVT 215 (629)
T ss_pred hhhceE-EEeccHHHHhhcccHHHHHHHHHhC---------CCCCeEEEEEccCChhHHHHHHHHcCCCe-EEEccCccc
Confidence 678999 9999999998877777777776553 678899999999996 4455555543331 221111111
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
....+.+.++..... .. ...+..++.. ....++||||+|++.|+.++..|.+.
T Consensus 216 ~~~~i~q~~~~v~~~---~k-------~~~L~~~L~~-~~~~~~IVF~~tk~~a~~l~~~L~~~ 268 (629)
T PRK11634 216 TRPDISQSYWTVWGM---RK-------NEALVRFLEA-EDFDAAIIFVRTKNATLEVAEALERN 268 (629)
T ss_pred cCCceEEEEEEechh---hH-------HHHHHHHHHh-cCCCCEEEEeccHHHHHHHHHHHHhC
Confidence 111222332222211 00 1122233322 23568999999999999999999765
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.96 E-value=4.1e-09 Score=98.90 Aligned_cols=123 Identities=12% Similarity=0.114 Sum_probs=73.1
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHH-hhhcCCCCCeeeecCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIA-LWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a-~wL~~~~~~~~~~~~~~ 126 (217)
+..+++ |||||+|.+.+.+++..++.++.++.. ....|++++|||+++ ..++. .++.. + ..+..-...
T Consensus 157 l~~v~~-lViDEAh~lld~gf~~~i~~il~~lp~-------~~~~q~ll~SATl~~~v~~l~~~~l~~-p-~~i~v~~~~ 226 (572)
T PRK04537 157 LHACEI-CVLDEADRMFDLGFIKDIRFLLRRMPE-------RGTRQTLLFSATLSHRVLELAYEHMNE-P-EKLVVETET 226 (572)
T ss_pred hhheee-eEecCHHHHhhcchHHHHHHHHHhccc-------ccCceEEEEeCCccHHHHHHHHHHhcC-C-cEEEecccc
Confidence 557789 999999999988888888887776421 136799999999985 33333 44432 2 112111112
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
..+..+.+.++. ... ... ...+..++. ...+.++||||+|++.|+.++..|.+..
T Consensus 227 ~~~~~i~q~~~~-~~~--~~k-------~~~L~~ll~-~~~~~k~LVF~nt~~~ae~l~~~L~~~g 281 (572)
T PRK04537 227 ITAARVRQRIYF-PAD--EEK-------QTLLLGLLS-RSEGARTMVFVNTKAFVERVARTLERHG 281 (572)
T ss_pred ccccceeEEEEe-cCH--HHH-------HHHHHHHHh-cccCCcEEEEeCCHHHHHHHHHHHHHcC
Confidence 222223333221 111 000 011122221 2347799999999999999999997653
No 29
>PTZ00424 helicase 45; Provisional
Probab=98.96 E-value=3.8e-09 Score=94.39 Aligned_cols=123 Identities=11% Similarity=0.127 Sum_probs=70.8
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-HHHHhhhcCCCCCeeeecCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI-YDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~-~~~a~wL~~~~~~~~~~~~~~ 126 (217)
.++++++ ||+||+|.+.+.+++..+..++.++ ++..|++++|||+++. .++...+..++ ..+......
T Consensus 167 ~l~~i~l-vViDEah~~~~~~~~~~~~~i~~~~---------~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~ 235 (401)
T PTZ00424 167 RVDDLKL-FILDEADEMLSRGFKGQIYDVFKKL---------PPDVQVALFSATMPNEILELTTKFMRDP-KRILVKKDE 235 (401)
T ss_pred ccccccE-EEEecHHHHHhcchHHHHHHHHhhC---------CCCcEEEEEEecCCHHHHHHHHHHcCCC-EEEEeCCCC
Confidence 4778999 9999999999866665555554432 6789999999999963 33333332222 111111111
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.....+...+...+. ..+. ...+..++... ...++||||+|++.|+.++..+...
T Consensus 236 ~~~~~~~~~~~~~~~----~~~~-----~~~l~~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~ 290 (401)
T PTZ00424 236 LTLEGIRQFYVAVEK----EEWK-----FDTLCDLYETL-TITQAIIYCNTRRKVDYLTKKMHER 290 (401)
T ss_pred cccCCceEEEEecCh----HHHH-----HHHHHHHHHhc-CCCeEEEEecCcHHHHHHHHHHHHC
Confidence 111222222222211 1110 11222233222 3568999999999999999999765
No 30
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.93 E-value=5.8e-09 Score=92.54 Aligned_cols=130 Identities=21% Similarity=0.197 Sum_probs=70.7
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCC--CCCeeeecCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFG--KPTVYAQIDD 125 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~--~~~~~~~~~~ 125 (217)
++.++++ ||+||+|.+.. ..+..+...+..+..+. ......++++||||++. .+.++|... ....+..+..
T Consensus 142 ~~~~~~~-iV~DE~H~~~~-~~~~~~~~~l~~~~~~~---~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g 214 (357)
T TIGR03158 142 FYTKFST-VIFDEFHLYDA-KQLVGMLFLLAYMQLIR---FFECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAPIDG 214 (357)
T ss_pred hhcCCCE-EEEecccccCc-ccchhhhhhhHHHHHHH---hhhcCCcEEEEecCCCH--HHHHHHHhccccCceeeeecC
Confidence 5689999 99999999986 34444454444443331 11235799999999874 333333210 0001101111
Q ss_pred ------------------CCccc--cceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHh--cCCCCeEEEeCChhHHHH
Q psy3103 126 ------------------SFRPV--KLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQY--SDNKPTLIFCATRKGVEH 183 (217)
Q Consensus 126 ------------------~~Rp~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sRk~~e~ 183 (217)
++||+ +++..+.. ... +.. ..+...+..+.+.+ ..++++||||+|++.|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-----~~~-~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~ 287 (357)
T TIGR03158 215 EKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APD-----FKE-EELSELAEEVIERFRQLPGERGAIILDSLDEVNR 287 (357)
T ss_pred cccccCCChhhhccccccccceeccceEEEEEe-CCc-----hhH-HHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHH
Confidence 23433 33333222 111 111 11112223333333 246789999999999999
Q ss_pred HHHHHHHh
Q psy3103 184 TCTILRQE 191 (217)
Q Consensus 184 ~A~~l~~~ 191 (217)
++..|.+.
T Consensus 288 l~~~L~~~ 295 (357)
T TIGR03158 288 LSDLLQQQ 295 (357)
T ss_pred HHHHHhhh
Confidence 99999864
No 31
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.91 E-value=1.2e-08 Score=96.10 Aligned_cols=134 Identities=19% Similarity=0.171 Sum_probs=82.8
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC--HHHHHhhhcCCCCCeeeecCCCCc
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN--IYDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n--~~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
++.+ |||||+|.+.+ +|..++-...+|..+. .. .++..+++||||.+. ..++.+|++...+.. .+.+..|
T Consensus 127 ~l~~-iViDEaH~i~~--~g~~frp~y~~l~~l~--~~-~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~--~~~~~~r 198 (591)
T TIGR01389 127 PIAL-VAVDEAHCVSQ--WGHDFRPEYQRLGSLA--ER-FPQVPRIALTATADAETRQDIRELLRLADANE--FITSFDR 198 (591)
T ss_pred CCCE-EEEeCCccccc--ccCccHHHHHHHHHHH--Hh-CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCe--EecCCCC
Confidence 6789 99999999985 7877777766665543 12 234559999999984 467999998654332 2233334
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc----ccc--CCHHHHH
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM----SIQ--TSPEVRE 202 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~----~~~--l~~~e~~ 202 (217)
| .+...+.. .. .. ...+...+... .+.++||||+||+.|+.++..|.... .+. ++.++++
T Consensus 199 ~-nl~~~v~~--~~---~~-------~~~l~~~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~ 264 (591)
T TIGR01389 199 P-NLRFSVVK--KN---NK-------QKFLLDYLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRA 264 (591)
T ss_pred C-CcEEEEEe--CC---CH-------HHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHH
Confidence 4 22222211 11 11 11122222222 36789999999999999999997643 111 4566665
Q ss_pred HHHH
Q psy3103 203 IVDK 206 (217)
Q Consensus 203 ~l~~ 206 (217)
.+.+
T Consensus 265 ~i~~ 268 (591)
T TIGR01389 265 ENQE 268 (591)
T ss_pred HHHH
Confidence 5543
No 32
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.81 E-value=1.7e-08 Score=91.33 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=70.2
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHH-hhhcCCCCCeeeecCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIA-LWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a-~wL~~~~~~~~~~~~~~ 126 (217)
++++++ +|+||+|.+.+.+++..++.++.++. .....+.+++|||++. ..+++ .++. ++ . ...+.+.
T Consensus 155 l~~v~~-lViDEad~l~~~~f~~~i~~i~~~~~-------~~~~~~~~l~SAT~~~~~~~~~~~~~~-~p-~-~i~v~~~ 223 (423)
T PRK04837 155 LGAIQV-VVLDEADRMFDLGFIKDIRWLFRRMP-------PANQRLNMLFSATLSYRVRELAFEHMN-NP-E-YVEVEPE 223 (423)
T ss_pred cccccE-EEEecHHHHhhcccHHHHHHHHHhCC-------CccceeEEEEeccCCHHHHHHHHHHCC-CC-E-EEEEcCC
Confidence 457999 99999999998778788777766531 1234567899999984 34444 3333 22 1 1122222
Q ss_pred Cc-cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 FR-PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 ~R-p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.. ...+...+. ++.. .. . ...+..++.. ....++||||+|++.|+.++..|...
T Consensus 224 ~~~~~~i~~~~~-~~~~----~~---k--~~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~ 278 (423)
T PRK04837 224 QKTGHRIKEELF-YPSN----EE---K--MRLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLAAD 278 (423)
T ss_pred CcCCCceeEEEE-eCCH----HH---H--HHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHhC
Confidence 21 112222211 1110 00 0 1122223322 23578999999999999999999764
No 33
>KOG0328|consensus
Probab=98.79 E-value=1.8e-08 Score=85.44 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=93.8
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC-CHHHHHhhhcCCCCCeeeecCCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP-NIYDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~-n~~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
.+.+++ +|+||++.+.+..+|.++--+.. ++ ++..|.|.+|||+| ...++.+.+..++.. + .+..+.
T Consensus 167 tr~vkm-lVLDEaDemL~kgfk~Qiydiyr---~l------p~~~Qvv~~SATlp~eilemt~kfmtdpvr-i-lvkrde 234 (400)
T KOG0328|consen 167 TRAVKM-LVLDEADEMLNKGFKEQIYDIYR---YL------PPGAQVVLVSATLPHEILEMTEKFMTDPVR-I-LVKRDE 234 (400)
T ss_pred ccceeE-EEeccHHHHHHhhHHHHHHHHHH---hC------CCCceEEEEeccCcHHHHHHHHHhcCCcee-E-EEecCC
Confidence 458999 99999999998767766555543 34 78999999999999 577777777666533 2 334444
Q ss_pred cccc-ceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc---cccCCHHHHHH
Q psy3103 128 RPVK-LTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM---SIQTSPEVREI 203 (217)
Q Consensus 128 Rp~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~---~~~l~~~e~~~ 203 (217)
.+.. ++++++..+.. . ..| +.+..+.+.+. -.+++||||||+.+.-+.+.+.+.- .......+.++
T Consensus 235 ltlEgIKqf~v~ve~E-e-wKf-------dtLcdLYd~Lt-ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkE 304 (400)
T KOG0328|consen 235 LTLEGIKQFFVAVEKE-E-WKF-------DTLCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKE 304 (400)
T ss_pred Cchhhhhhheeeechh-h-hhH-------hHHHHHhhhhe-hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhH
Confidence 4433 55555544321 1 111 23344444443 4589999999999999888887543 22234556666
Q ss_pred HHHHHhhccCC
Q psy3103 204 VDKCMSNMMDN 214 (217)
Q Consensus 204 l~~~~~~i~d~ 214 (217)
.++++++.+.+
T Consensus 305 Rd~im~dFRsg 315 (400)
T KOG0328|consen 305 RDKIMNDFRSG 315 (400)
T ss_pred HHHHHHHhhcC
Confidence 77777665544
No 34
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.76 E-value=3.7e-08 Score=93.15 Aligned_cols=135 Identities=21% Similarity=0.280 Sum_probs=77.9
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH--HHHHhhhcCCCCCeeeecCCCCc
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI--YDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~--~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
++.+ |||||+|.+.+ +|..+.-.+.+|..+. ...++.++++||||.++. .++.++++...+.. .+.+..|
T Consensus 139 ~l~~-iVIDEaH~i~~--~G~~fr~~y~~L~~l~---~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~--~~~~~~r 210 (607)
T PRK11057 139 NPAL-LAVDEAHCISQ--WGHDFRPEYAALGQLR---QRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI--QISSFDR 210 (607)
T ss_pred CCCE-EEEeCcccccc--ccCcccHHHHHHHHHH---HhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEE--EECCCCC
Confidence 5789 99999999986 5554443333333331 224678999999999865 46788887543221 2223334
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc----cc--cCCHHHHH
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM----SI--QTSPEVRE 202 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~----~~--~l~~~e~~ 202 (217)
| .+...+. . .. .. ...+...+.. ..++++||||+||+.|+.++..|.+.. .+ .+++++++
T Consensus 211 ~-nl~~~v~--~-~~--~~-------~~~l~~~l~~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~ 276 (607)
T PRK11057 211 P-NIRYTLV--E-KF--KP-------LDQLMRYVQE-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRA 276 (607)
T ss_pred C-cceeeee--e-cc--ch-------HHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHH
Confidence 3 2211111 1 10 00 0111222222 357899999999999999999998653 11 13566665
Q ss_pred HHHHH
Q psy3103 203 IVDKC 207 (217)
Q Consensus 203 ~l~~~ 207 (217)
++.+.
T Consensus 277 ~i~~~ 281 (607)
T PRK11057 277 DVQEA 281 (607)
T ss_pred HHHHH
Confidence 44433
No 35
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=6.9e-08 Score=89.56 Aligned_cols=124 Identities=12% Similarity=0.090 Sum_probs=81.3
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-HHHHhhhcCCCCCeeeecC-
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI-YDIALWLGFGKPTVYAQID- 124 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~-~~~a~wL~~~~~~~~~~~~- 124 (217)
-.+..+++ +|+||++.+.|.++...++.++..+ +...|.+++|||+++. .+++.-+-.++. .+ .+.
T Consensus 170 l~l~~v~~-lVlDEADrmLd~Gf~~~i~~I~~~~---------p~~~qtllfSAT~~~~i~~l~~~~l~~p~-~i-~v~~ 237 (513)
T COG0513 170 LDLSGVET-LVLDEADRMLDMGFIDDIEKILKAL---------PPDRQTLLFSATMPDDIRELARRYLNDPV-EI-EVSV 237 (513)
T ss_pred cchhhcCE-EEeccHhhhhcCCCHHHHHHHHHhC---------CcccEEEEEecCCCHHHHHHHHHHccCCc-EE-EEcc
Confidence 34678999 9999999999999999999888763 5689999999999972 233333333332 22 222
Q ss_pred CCC--ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 125 DSF--RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 125 ~~~--Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
... .+..+.+.++..+... .. ...+..++... ...++||||+|++.|+.++..+....
T Consensus 238 ~~~~~~~~~i~q~~~~v~~~~--~k-------~~~L~~ll~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g 297 (513)
T COG0513 238 EKLERTLKKIKQFYLEVESEE--EK-------LELLLKLLKDE-DEGRVIVFVRTKRLVEELAESLRKRG 297 (513)
T ss_pred ccccccccCceEEEEEeCCHH--HH-------HHHHHHHHhcC-CCCeEEEEeCcHHHHHHHHHHHHHCC
Confidence 122 3344555554443221 00 12334444333 23469999999999999999998773
No 36
>KOG0330|consensus
Probab=98.74 E-value=1.2e-07 Score=83.37 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=96.2
Q ss_pred HHHhhhhheecccCCChh-HHHHH-------HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEE
Q psy3103 26 KDMLRSSIGYHHAGMSPE-DRTII-------EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVA 97 (217)
Q Consensus 26 ~~~~~~~~~~~h~~l~~~-~~~~~-------l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~ 97 (217)
.-+...+-.+|-.+-||. -|..+ ++.+++ +|+||++.+.|.+|+..+..++.++ +.+.|.+.
T Consensus 171 ~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~-LVlDEADrlLd~dF~~~ld~ILk~i---------p~erqt~L 240 (476)
T KOG0330|consen 171 LQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKF-LVLDEADRLLDMDFEEELDYILKVI---------PRERQTFL 240 (476)
T ss_pred HHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHH-HhhchHHhhhhhhhHHHHHHHHHhc---------CccceEEE
Confidence 344555555665555664 55544 468999 9999999999999999999998874 78999999
Q ss_pred EeccCC-CHHHHHhhhcCCCCCeeeecCCCCcccc-ceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEe
Q psy3103 98 VSATIP-NIYDIALWLGFGKPTVYAQIDDSFRPVK-LTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFC 175 (217)
Q Consensus 98 LSATl~-n~~~~a~wL~~~~~~~~~~~~~~~Rp~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~ 175 (217)
+|||++ +...+..- ..+.+..+ ...+.++.++ +++++..++.+++ ...+..+++.. .+.++||||
T Consensus 241 fsATMt~kv~kL~ra-sl~~p~~v-~~s~ky~tv~~lkQ~ylfv~~k~K----------~~yLV~ll~e~-~g~s~iVF~ 307 (476)
T KOG0330|consen 241 FSATMTKKVRKLQRA-SLDNPVKV-AVSSKYQTVDHLKQTYLFVPGKDK----------DTYLVYLLNEL-AGNSVIVFC 307 (476)
T ss_pred EEeecchhhHHHHhh-ccCCCeEE-eccchhcchHHhhhheEecccccc----------chhHHHHHHhh-cCCcEEEEE
Confidence 999998 45555522 22222333 3344444443 3344444554432 11233344443 368999999
Q ss_pred CChhHHHHHHHHHHHhc
Q psy3103 176 ATRKGVEHTCTILRQEM 192 (217)
Q Consensus 176 ~sRk~~e~~A~~l~~~~ 192 (217)
+|-..+..+|..+....
T Consensus 308 ~t~~tt~~la~~L~~lg 324 (476)
T KOG0330|consen 308 NTCNTTRFLALLLRNLG 324 (476)
T ss_pred eccchHHHHHHHHHhcC
Confidence 99999999999998664
No 37
>KOG0331|consensus
Probab=98.71 E-value=3.3e-08 Score=90.56 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=76.9
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC-CHHHHHhhhcCCCCCeeeecCCC-
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP-NIYDIALWLGFGKPTVYAQIDDS- 126 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~-n~~~~a~wL~~~~~~~~~~~~~~- 126 (217)
++.+++ +|+||++.+.|.++.+.++.++.++- ++..|.+..|||.| ..+.+|.=+-.++ ..+.....+
T Consensus 237 l~~v~y-lVLDEADrMldmGFe~qI~~Il~~i~--------~~~rQtlm~saTwp~~v~~lA~~fl~~~-~~i~ig~~~~ 306 (519)
T KOG0331|consen 237 LSRVTY-LVLDEADRMLDMGFEPQIRKILSQIP--------RPDRQTLMFSATWPKEVRQLAEDFLNNP-IQINVGNKKE 306 (519)
T ss_pred ccceeE-EEeccHHhhhccccHHHHHHHHHhcC--------CCcccEEEEeeeccHHHHHHHHHHhcCc-eEEEecchhh
Confidence 568999 99999999999999999999998751 23348999999999 5666766543343 111111010
Q ss_pred -CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhc--CCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 -FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYS--DNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 -~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..--.+.+.+..++. . .-...+..++..+. .+.++||||+|++.|+.++..+...
T Consensus 307 ~~a~~~i~qive~~~~------~----~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~ 364 (519)
T KOG0331|consen 307 LKANHNIRQIVEVCDE------T----AKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK 364 (519)
T ss_pred hhhhcchhhhhhhcCH------H----HHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc
Confidence 000011111111110 0 00122334444443 4669999999999999999999875
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.70 E-value=8.8e-08 Score=94.56 Aligned_cols=135 Identities=21% Similarity=0.259 Sum_probs=79.0
Q ss_pred hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC--HHHHHhhhcCCCCCeeeecCCCC-c
Q psy3103 52 FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN--IYDIALWLGFGKPTVYAQIDDSF-R 128 (217)
Q Consensus 52 v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n--~~~~a~wL~~~~~~~~~~~~~~~-R 128 (217)
+.+ |||||+|.+.+ +|..+.-...+|..+. +..+..++++||||.+. .+++.+.|+.... . .+..++ |
T Consensus 582 Lsl-IVIDEAHcVSq--WGhDFRpdYr~L~~Lr---~~fp~vPilALTATAT~~V~eDI~~~L~l~~~-~--vfr~Sf~R 652 (1195)
T PLN03137 582 LAR-FVIDEAHCVSQ--WGHDFRPDYQGLGILK---QKFPNIPVLALTATATASVKEDVVQALGLVNC-V--VFRQSFNR 652 (1195)
T ss_pred cce-eccCcchhhhh--cccchHHHHHHHHHHH---HhCCCCCeEEEEecCCHHHHHHHHHHcCCCCc-E--EeecccCc
Confidence 788 99999999986 6655544444433331 22467889999999983 4678888876432 1 333333 4
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc----cc--cCCHHHHH
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM----SI--QTSPEVRE 202 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~----~~--~l~~~e~~ 202 (217)
| .+...+. + +. .. . ...+...+.....+.+.||||+||+.|+.+|..|.+.. .+ .+++++|+
T Consensus 653 p-NL~y~Vv--~-k~--kk-----~-le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~ 720 (1195)
T PLN03137 653 P-NLWYSVV--P-KT--KK-----C-LEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRA 720 (1195)
T ss_pred c-ceEEEEe--c-cc--hh-----H-HHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHH
Confidence 4 3322222 1 11 00 0 11122222222235679999999999999999998653 11 14566665
Q ss_pred HHHHH
Q psy3103 203 IVDKC 207 (217)
Q Consensus 203 ~l~~~ 207 (217)
...+.
T Consensus 721 ~vqe~ 725 (1195)
T PLN03137 721 FVQKQ 725 (1195)
T ss_pred HHHHH
Confidence 54433
No 39
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.65 E-value=1.8e-07 Score=89.11 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=73.8
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC-CHHHHHhhhcCCCCCeeeecCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP-NIYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~-n~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
.++++++ ||+||+|.... .|..+..++.++ . ....|++.+|||++ +.+.+.+|++.. ..+ .+.
T Consensus 288 ~L~~v~~-VVIDEaHEr~~--~~DllL~llk~~---~-----~~~rq~ILmSATl~~dv~~l~~~~~~p--~~I-~I~-- 351 (675)
T PHA02653 288 KLFDYGT-VIIDEVHEHDQ--IGDIIIAVARKH---I-----DKIRSLFLMTATLEDDRDRIKEFFPNP--AFV-HIP-- 351 (675)
T ss_pred ccccCCE-EEccccccCcc--chhHHHHHHHHh---h-----hhcCEEEEEccCCcHhHHHHHHHhcCC--cEE-EeC--
Confidence 4788999 99999999976 455554444332 1 23348999999998 677898888632 122 222
Q ss_pred Cc-cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHh--cCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 FR-PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQY--SDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 ~R-p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+ ..|+++++................. ...+...+... ..++++||||+++++|+.++..|.+.
T Consensus 352 grt~~pV~~~yi~~~~~~~~~~~y~~~~-k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~ 418 (675)
T PHA02653 352 GGTLFPISEVYVKNKYNPKNKRAYIEEE-KKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKR 418 (675)
T ss_pred CCcCCCeEEEEeecCcccccchhhhHHH-HHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhh
Confidence 23 2455554432111100000000000 11112222222 23568999999999999999999865
No 40
>KOG0326|consensus
Probab=98.63 E-value=8.2e-08 Score=82.77 Aligned_cols=123 Identities=12% Similarity=0.071 Sum_probs=83.6
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDD 125 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~ 125 (217)
.-++++.. +|+||++-+.+.+++..+|.++.-| ++..|++..|||.|. ...|-+-.-.+|..+ +.-.
T Consensus 223 a~ls~c~~-lV~DEADKlLs~~F~~~~e~li~~l---------P~~rQillySATFP~tVk~Fm~~~l~kPy~I--NLM~ 290 (459)
T KOG0326|consen 223 ADLSDCVI-LVMDEADKLLSVDFQPIVEKLISFL---------PKERQILLYSATFPLTVKGFMDRHLKKPYEI--NLME 290 (459)
T ss_pred ccchhceE-EEechhhhhhchhhhhHHHHHHHhC---------CccceeeEEecccchhHHHHHHHhccCccee--ehhh
Confidence 44678999 9999999999999999999998864 899999999999995 344444333333222 2223
Q ss_pred CCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 126 SFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 126 ~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
...+..+++++-...+..+ ..++..+...+. -.+.||||||-+.+|.+|+.|.+..
T Consensus 291 eLtl~GvtQyYafV~e~qK----------vhCLntLfskLq-INQsIIFCNS~~rVELLAkKITelG 346 (459)
T KOG0326|consen 291 ELTLKGVTQYYAFVEERQK----------VHCLNTLFSKLQ-INQSIIFCNSTNRVELLAKKITELG 346 (459)
T ss_pred hhhhcchhhheeeechhhh----------hhhHHHHHHHhc-ccceEEEeccchHhHHHHHHHHhcc
Confidence 3445555554333332210 123333333333 4589999999999999999998664
No 41
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.62 E-value=2.1e-07 Score=90.51 Aligned_cols=122 Identities=12% Similarity=0.116 Sum_probs=72.6
Q ss_pred HHHHhhhhhHhhhhhh-hcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCC
Q psy3103 48 IEQLFRSGYLMILVHL-LGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~-l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
.++++++ |||||+|. ..+.++|..+. ..+.. ...++.|+|.||||+++. .+.++++..+ .+...
T Consensus 110 ~L~~v~~-VIiDEaHER~L~~Dl~L~ll---~~i~~-----~lr~dlqlIlmSATl~~~-~l~~~l~~~~-----vI~~~ 174 (819)
T TIGR01970 110 ELDGVGA-LIFDEFHERSLDADLGLALA---LDVQS-----SLREDLKILAMSATLDGE-RLSSLLPDAP-----VVESE 174 (819)
T ss_pred ccccCCE-EEEeccchhhhccchHHHHH---HHHHH-----hcCCCceEEEEeCCCCHH-HHHHHcCCCc-----EEEec
Confidence 3568999 99999995 55555654332 12111 125789999999999864 4788886322 22233
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.|..|+++++...+.. ..+ ...+...+..++. ...+++|||++++++++.++..|.+.
T Consensus 175 gr~~pVe~~y~~~~~~---~~~--~~~v~~~l~~~l~--~~~g~iLVFlpg~~eI~~l~~~L~~~ 232 (819)
T TIGR01970 175 GRSFPVEIRYLPLRGD---QRL--EDAVSRAVEHALA--SETGSILVFLPGQAEIRRVQEQLAER 232 (819)
T ss_pred CcceeeeeEEeecchh---hhH--HHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHhh
Confidence 4555555554332211 111 1111111222221 23578999999999999999999874
No 42
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.57 E-value=3.9e-07 Score=84.96 Aligned_cols=138 Identities=22% Similarity=0.188 Sum_probs=86.6
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC--HHHHHhhhcCCCCCeeeecCCCCc
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN--IYDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n--~~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
.+.+ +||||+|.+.+ +|..+.=-..+|..+. ..-+++.+++|+||-.. -.|+-+-|+...... ...+-.|
T Consensus 131 ~i~l-~vIDEAHCiSq--WGhdFRP~Y~~lg~l~---~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~--~~~sfdR 202 (590)
T COG0514 131 PISL-VAIDEAHCISQ--WGHDFRPDYRRLGRLR---AGLPNPPVLALTATATPRVRDDIREQLGLQDANI--FRGSFDR 202 (590)
T ss_pred CCce-EEechHHHHhh--cCCccCHhHHHHHHHH---hhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcce--EEecCCC
Confidence 5667 99999999996 8877766666665542 33458899999999875 467888888764322 2233345
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHH-hcCCCCeEEEeCChhHHHHHHHHHHHhc----cc--cCCHHHH
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQ-YSDNKPTLIFCATRKGVEHTCTILRQEM----SI--QTSPEVR 201 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LVF~~sRk~~e~~A~~l~~~~----~~--~l~~~e~ 201 (217)
| .+...+...+ + . ...+..+.+. ...+++.||||.||++||.+|..|.... .+ .++.++|
T Consensus 203 p-Ni~~~v~~~~---~-~--------~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR 269 (590)
T COG0514 203 P-NLALKVVEKG---E-P--------SDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEER 269 (590)
T ss_pred c-hhhhhhhhcc---c-H--------HHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHH
Confidence 4 2211111111 0 0 1111122211 2345679999999999999999998773 22 2577788
Q ss_pred HHHHHHHh
Q psy3103 202 EIVDKCMS 209 (217)
Q Consensus 202 ~~l~~~~~ 209 (217)
+.+.+...
T Consensus 270 ~~~q~~f~ 277 (590)
T COG0514 270 ERVQQAFL 277 (590)
T ss_pred HHHHHHHh
Confidence 77766543
No 43
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.57 E-value=1e-07 Score=95.64 Aligned_cols=127 Identities=11% Similarity=0.095 Sum_probs=71.6
Q ss_pred HHHHHhhhhhHhhhhhh-hcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCC
Q psy3103 47 IIEQLFRSGYLMILVHL-LGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDD 125 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~-l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~ 125 (217)
.++.++++ |||||+|. ..+.++ . ..++.++.. ..+..|+|++|||+. .+.|+++++..+ ++.+
T Consensus 175 ~~L~~~~~-IIIDEaHERsL~~D~--L-L~lLk~il~------~rpdLKlIlmSATld-~~~fa~~F~~ap---vI~V-- 238 (1283)
T TIGR01967 175 RFLSRYDT-IIIDEAHERSLNIDF--L-LGYLKQLLP------RRPDLKIIITSATID-PERFSRHFNNAP---IIEV-- 238 (1283)
T ss_pred cccccCcE-EEEcCcchhhccchh--H-HHHHHHHHh------hCCCCeEEEEeCCcC-HHHHHHHhcCCC---EEEE--
Confidence 45789999 99999994 444322 1 112222211 136789999999994 788999997543 2222
Q ss_pred CCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 126 SFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 126 ~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..|..|++..+.................+...+..++. ...+.+|||++++++++.++..|.+.
T Consensus 239 ~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~--~~~GdILVFLpg~~EI~~l~~~L~~~ 302 (1283)
T TIGR01967 239 SGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA--EGPGDILIFLPGEREIRDAAEILRKR 302 (1283)
T ss_pred CCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh--hCCCCEEEeCCCHHHHHHHHHHHHhc
Confidence 23444444443322111100000010111111222211 23578999999999999999999865
No 44
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.56 E-value=3e-07 Score=89.47 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=70.1
Q ss_pred HHHHhhhhhHhhhhhhh-cCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCC
Q psy3103 48 IEQLFRSGYLMILVHLL-GEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l-~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
.++++++ ||+||+|.. .+.+. .+..+...++ ...++.|+|.||||+++. .++++++..+ .+...
T Consensus 113 ~L~~v~~-IIlDEaHER~l~~Dl--~L~ll~~i~~------~lr~~lqlilmSATl~~~-~l~~~~~~~~-----~I~~~ 177 (812)
T PRK11664 113 ELSGVGL-VILDEFHERSLQADL--ALALLLDVQQ------GLRDDLKLLIMSATLDND-RLQQLLPDAP-----VIVSE 177 (812)
T ss_pred CcCcCcE-EEEcCCCccccccch--HHHHHHHHHH------hCCccceEEEEecCCCHH-HHHHhcCCCC-----EEEec
Confidence 3578999 999999973 22211 1222211111 225789999999999764 5788885322 22333
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHH
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQ 190 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~ 190 (217)
.|..|+++++...+.. .. ....+...+..++. ...+.+|||++++++++.++..|.+
T Consensus 178 gr~~pV~~~y~~~~~~---~~--~~~~v~~~l~~~l~--~~~g~iLVFlpg~~ei~~l~~~L~~ 234 (812)
T PRK11664 178 GRSFPVERRYQPLPAH---QR--FDEAVARATAELLR--QESGSLLLFLPGVGEIQRVQEQLAS 234 (812)
T ss_pred CccccceEEeccCchh---hh--HHHHHHHHHHHHHH--hCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 4555665554432211 11 11111111222221 2367899999999999999999986
No 45
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.54 E-value=1.1e-07 Score=95.19 Aligned_cols=125 Identities=10% Similarity=0.068 Sum_probs=71.9
Q ss_pred HHHHHhhhhhHhhhhhh-hcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCC
Q psy3103 47 IIEQLFRSGYLMILVHL-LGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDD 125 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~-l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~ 125 (217)
.+++++++ |||||+|. ..+.++ .+. .+.+ +. ...++.|+|++|||+ +++.|+++++..+ ++.+.
T Consensus 182 ~~Ls~~~~-IIIDEAHERsLn~Df--LLg-~Lk~---lL---~~rpdlKvILmSATi-d~e~fs~~F~~ap---vI~V~- 246 (1294)
T PRK11131 182 RLLMQYDT-IIIDEAHERSLNIDF--ILG-YLKE---LL---PRRPDLKVIITSATI-DPERFSRHFNNAP---IIEVS- 246 (1294)
T ss_pred CccccCcE-EEecCccccccccch--HHH-HHHH---hh---hcCCCceEEEeeCCC-CHHHHHHHcCCCC---EEEEc-
Confidence 45889999 99999994 444322 221 2222 21 113578999999999 4788999887543 22333
Q ss_pred CCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHh--cCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 126 SFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQY--SDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 126 ~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.|..|++..+............ .. ...+...+..+ ...+.+|||++++++++.++..|.+.
T Consensus 247 -Gr~~pVei~y~p~~~~~~~~~~---d~-l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~ 309 (1294)
T PRK11131 247 -GRTYPVEVRYRPIVEEADDTER---DQ-LQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKL 309 (1294)
T ss_pred -CccccceEEEeecccccchhhH---HH-HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhc
Confidence 3334444443322211100000 00 11111222211 33578999999999999999999864
No 46
>KOG4150|consensus
Probab=98.52 E-value=1.9e-06 Score=79.42 Aligned_cols=143 Identities=10% Similarity=-0.040 Sum_probs=101.8
Q ss_pred HHHHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhh-hcCCCCCeeee
Q psy3103 44 DRTIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALW-LGFGKPTVYAQ 122 (217)
Q Consensus 44 ~~~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~w-L~~~~~~~~~~ 122 (217)
.|+.++=...+ +++||+|.+... +|++....+.||..++...+.+.+++++..|||+.++-.+-.- .|.+. +..
T Consensus 405 ~~~~~~~~~~~-~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E---~~L 479 (1034)
T KOG4150|consen 405 CYNVPVFEELC-KDTNSCALYLFP-TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSE---LEL 479 (1034)
T ss_pred ccccHHHHHHH-hcccceeeeecc-hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcc---eEE
Confidence 88999999999 999999999986 9999999999999988877888999999999999988775444 45542 223
Q ss_pred cCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 123 IDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 123 ~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
+.-+..|..-+..+..-|+...+.+-.-...+.+......+.+..+-.+|.||++|+-||.+....+..
T Consensus 480 i~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I 548 (1034)
T KOG4150|consen 480 VTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREI 548 (1034)
T ss_pred EEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHH
Confidence 444556766655544322221111111112233333444556677889999999999999987666544
No 47
>KOG0335|consensus
Probab=98.43 E-value=7.7e-07 Score=80.72 Aligned_cols=173 Identities=12% Similarity=0.121 Sum_probs=103.6
Q ss_pred HHHhhhhheecccCCChhHH-------HHHHHHhhhhhHhhhhhhhcC-CCchhHHHHHHHHHHhHHHhhcCCCCceEEE
Q psy3103 26 KDMLRSSIGYHHAGMSPEDR-------TIIEQLFRSGYLMILVHLLGE-ESRGPVLEAVVCRMRTVQKSQRASQPIRFVA 97 (217)
Q Consensus 26 ~~~~~~~~~~~h~~l~~~~~-------~~~l~~v~l~vViDEiH~l~~-~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~ 97 (217)
+....+.=+++-..-|+.+- .--++++++ +|+||++.+.| .+||+.+..++.++... .....|.+.
T Consensus 194 ~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~-~vLDEADrMlD~mgF~p~Ir~iv~~~~~~-----~~~~~qt~m 267 (482)
T KOG0335|consen 194 AQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKF-LVLDEADRMLDEMGFEPQIRKIVEQLGMP-----PKNNRQTLL 267 (482)
T ss_pred hhhhhhccCccEEEecCchhhhhhhcceeehhhCcE-EEecchHHhhhhccccccHHHHhcccCCC-----CccceeEEE
Confidence 44445555566666565432 344779999 99999999999 79999999999875322 135789999
Q ss_pred EeccCC-CHHHHHhhhcCCCCCeeeecC-CCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhc---CC----
Q psy3103 98 VSATIP-NIYDIALWLGFGKPTVYAQID-DSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYS---DN---- 168 (217)
Q Consensus 98 LSATl~-n~~~~a~wL~~~~~~~~~~~~-~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---- 168 (217)
+|||.| +...++..+-.+.. +...+. -...+..+.+.+..++..++ ...+..++.... ..
T Consensus 268 FSAtfp~~iq~l~~~fl~~~y-i~laV~rvg~~~~ni~q~i~~V~~~~k----------r~~Lldll~~~~~~~~~~~~~ 336 (482)
T KOG0335|consen 268 FSATFPKEIQRLAADFLKDNY-IFLAVGRVGSTSENITQKILFVNEMEK----------RSKLLDLLNKDDGPPSDGEPK 336 (482)
T ss_pred EeccCChhhhhhHHHHhhccc-eEEEEeeeccccccceeEeeeecchhh----------HHHHHHHhhcccCCcccCCcc
Confidence 999999 55555554433311 111110 01112233333333332221 111222221111 12
Q ss_pred -CCeEEEeCChhHHHHHHHHHHHhc-c--ccCCHHHHHHHHHHHhhccCCC
Q psy3103 169 -KPTLIFCATRKGVEHTCTILRQEM-S--IQTSPEVREIVDKCMSNMMDNK 215 (217)
Q Consensus 169 -~~~LVF~~sRk~~e~~A~~l~~~~-~--~~l~~~e~~~l~~~~~~i~d~~ 215 (217)
..++|||.|++.|-.++..+.... + ....+..+.+..+.++..++++
T Consensus 337 ~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~ 387 (482)
T KOG0335|consen 337 WEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGK 387 (482)
T ss_pred cceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCC
Confidence 279999999999999999998664 1 1245666777777777666654
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.42 E-value=1.8e-06 Score=84.93 Aligned_cols=115 Identities=10% Similarity=0.078 Sum_probs=67.5
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
.++++++ +||||+|.++. .... +|+.+ ..++++++|||| |.++.+...+............+..
T Consensus 570 ~f~~L~l-lVIDEahrfgv-----~~~~---~L~~~------~~~~~vL~~SAT-piprtl~~~l~g~~d~s~I~~~p~~ 633 (926)
T TIGR00580 570 KFKDLGL-LIIDEEQRFGV-----KQKE---KLKEL------RTSVDVLTLSAT-PIPRTLHMSMSGIRDLSIIATPPED 633 (926)
T ss_pred CcccCCE-EEeecccccch-----hHHH---HHHhc------CCCCCEEEEecC-CCHHHHHHHHhcCCCcEEEecCCCC
Confidence 4689999 99999999653 2222 22222 577999999999 4555555444322111111111222
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
| .++..++..++ . . .....+...+.++++++|||++.+.++.++..+.+..
T Consensus 634 R-~~V~t~v~~~~-----~-----~---~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~ 684 (926)
T TIGR00580 634 R-LPVRTFVMEYD-----P-----E---LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELV 684 (926)
T ss_pred c-cceEEEEEecC-----H-----H---HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhC
Confidence 2 23333332221 0 0 0112233345678899999999999999999998753
No 49
>KOG0333|consensus
Probab=98.38 E-value=3.8e-06 Score=76.66 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=89.0
Q ss_pred hHHHHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHh--------------hcCCCC--ceEEEEeccCCC-H
Q psy3103 43 EDRTIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKS--------------QRASQP--IRFVAVSATIPN-I 105 (217)
Q Consensus 43 ~~~~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~--------------~~~~~~--~riv~LSATl~n-~ 105 (217)
+.+.-.++.+.+ ||+||+..+.|.++-+.+..+|+.|=.-..- .....+ .|.+.+|||+|. .
T Consensus 388 enr~lvl~qcty-vvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~v 466 (673)
T KOG0333|consen 388 ENRYLVLNQCTY-VVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAV 466 (673)
T ss_pred HHHHHHhccCce-EeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHH
Confidence 345567889999 9999999999999999999999875211000 001111 689999999985 4
Q ss_pred HHHHhhhcCCCCCeeeecCCCCccccceeE-EEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHH
Q psy3103 106 YDIALWLGFGKPTVYAQIDDSFRPVKLTKI-VRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHT 184 (217)
Q Consensus 106 ~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~ 184 (217)
+-+|.-+-.++ .+..+.+-.+|+|.... ++..+... + ...+..+++.. ...|+|||+|+++.|+.+
T Consensus 467 erlar~ylr~p--v~vtig~~gk~~~rveQ~v~m~~ed~---k-------~kkL~eil~~~-~~ppiIIFvN~kk~~d~l 533 (673)
T KOG0333|consen 467 ERLARSYLRRP--VVVTIGSAGKPTPRVEQKVEMVSEDE---K-------RKKLIEILESN-FDPPIIIFVNTKKGADAL 533 (673)
T ss_pred HHHHHHHhhCC--eEEEeccCCCCccchheEEEEecchH---H-------HHHHHHHHHhC-CCCCEEEEEechhhHHHH
Confidence 45665554443 22245556677765443 33333221 1 12333444433 357899999999999999
Q ss_pred HHHHHHhc
Q psy3103 185 CTILRQEM 192 (217)
Q Consensus 185 A~~l~~~~ 192 (217)
|+.|.+..
T Consensus 534 Ak~LeK~g 541 (673)
T KOG0333|consen 534 AKILEKAG 541 (673)
T ss_pred HHHHhhcc
Confidence 99998775
No 50
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.34 E-value=2.8e-06 Score=82.37 Aligned_cols=126 Identities=19% Similarity=0.142 Sum_probs=69.8
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
.+.++++ +|+||+| + +..+-..++.++..+... ....+.|++++|||++. ..+++..+..++. .+ .+...
T Consensus 168 ~L~~v~~-LVLDEAD-L-d~gF~~~l~~Il~~l~rp----~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~-~i-~V~~~ 238 (844)
T TIGR02621 168 FLGQDAL-IVHDEAH-L-EPAFQELLKQIMNEQQRP----PDFLPLRVVELTATSRTDGPDRTTLLSAEDY-KH-PVLKK 238 (844)
T ss_pred hhccceE-EEEehhh-h-ccccHHHHHHHHHhcccC----cccccceEEEEecCCCccHHHHHHHHccCCc-ee-ecccc
Confidence 3789999 9999999 3 445777777776653100 00123699999999984 4556666554331 11 11111
Q ss_pred Cccc-cceeEEEeecCCCCCchhHHHHHhhHHHHHHHHH-hcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 127 FRPV-KLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQ-YSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 127 ~Rp~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
.... .+.+ ++ +... .... ...+..+... ...++++||||||++.|+.++..|.+..
T Consensus 239 ~l~a~ki~q-~v--~v~~---e~Kl----~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g 296 (844)
T TIGR02621 239 RLAAKKIVK-LV--PPSD---EKFL----STMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK 296 (844)
T ss_pred cccccceEE-EE--ecCh---HHHH----HHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC
Confidence 1111 1111 11 1110 1001 1111111111 2346789999999999999999998654
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.20 E-value=9.9e-06 Score=81.50 Aligned_cols=113 Identities=11% Similarity=0.136 Sum_probs=66.0
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccC-CCHHHHHhhhcCCCCCeeeecCCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATI-PNIYDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl-~n~~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
++++++ +||||.|.++. .. ..+++.+ ..+.+++++|||. +....++.....+. ..+ ...+..
T Consensus 720 ~~~L~l-LVIDEahrfG~-----~~---~e~lk~l------~~~~qvLl~SATpiprtl~l~~~gl~d~-~~I-~~~p~~ 782 (1147)
T PRK10689 720 WKDLGL-LIVDEEHRFGV-----RH---KERIKAM------RADVDILTLTATPIPRTLNMAMSGMRDL-SII-ATPPAR 782 (1147)
T ss_pred HhhCCE-EEEechhhcch-----hH---HHHHHhc------CCCCcEEEEcCCCCHHHHHHHHhhCCCc-EEE-ecCCCC
Confidence 579999 99999999843 11 2233333 5789999999995 44444433221221 111 222222
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
| .++...+..+.. . .....++..+.++++++||||+++.++.++..|.+..
T Consensus 783 r-~~v~~~~~~~~~------~-------~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~ 833 (1147)
T PRK10689 783 R-LAVKTFVREYDS------L-------VVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 (1147)
T ss_pred C-CCceEEEEecCc------H-------HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 2 233333222210 0 0012233445568899999999999999999998774
No 52
>KOG0351|consensus
Probab=98.14 E-value=3.4e-05 Score=75.90 Aligned_cols=136 Identities=21% Similarity=0.277 Sum_probs=90.3
Q ss_pred hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC--CHHHHHhhhcCCCCCeeeecCCCCcc
Q psy3103 52 FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP--NIYDIALWLGFGKPTVYAQIDDSFRP 129 (217)
Q Consensus 52 v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~--n~~~~a~wL~~~~~~~~~~~~~~~Rp 129 (217)
+.+ +||||+|.+.. +|..+.-.-.+|..+. +..+..-+++|+||.. --+|+.+-|+...+. .+.+++-+
T Consensus 386 lal-~vIDEAHCVSq--WgHdFRp~Yk~l~~l~---~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~---~~~~sfnR 456 (941)
T KOG0351|consen 386 LAL-FVIDEAHCVSQ--WGHDFRPSYKRLGLLR---IRFPGVPFIALTATATERVREDVIRSLGLRNPE---LFKSSFNR 456 (941)
T ss_pred eEE-EEecHHHHhhh--hcccccHHHHHHHHHH---hhCCCCCeEEeehhccHHHHHHHHHHhCCCCcc---eecccCCC
Confidence 678 99999999995 8888887777765542 2234488999999985 467899999875422 45666655
Q ss_pred ccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc---cc---cCCHHHHHH
Q psy3103 130 VKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM---SI---QTSPEVREI 203 (217)
Q Consensus 130 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~---~~---~l~~~e~~~ 203 (217)
..+...|..-.... . ......-+.....+.+.||+|.+|+.||.++..|.... .+ .+++.+|+.
T Consensus 457 ~NL~yeV~~k~~~~--~--------~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~ 526 (941)
T KOG0351|consen 457 PNLKYEVSPKTDKD--A--------LLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERET 526 (941)
T ss_pred CCceEEEEeccCcc--c--------hHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHH
Confidence 56655443211110 0 01122223344568899999999999999999998665 11 146666655
Q ss_pred HHH
Q psy3103 204 VDK 206 (217)
Q Consensus 204 l~~ 206 (217)
+.+
T Consensus 527 Vq~ 529 (941)
T KOG0351|consen 527 VQK 529 (941)
T ss_pred HHH
Confidence 544
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.13 E-value=6.4e-05 Score=72.20 Aligned_cols=116 Identities=14% Similarity=0.062 Sum_probs=60.4
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
.++++++ ||+||+|.++...|+ .++. .+..+++++||||. .+..++-.+-.+-......-.+..
T Consensus 380 ~~~~l~l-vVIDE~Hrfg~~qr~--------~l~~------~~~~~~iL~~SATp-~prtl~~~~~g~~~~s~i~~~p~~ 443 (681)
T PRK10917 380 EFHNLGL-VIIDEQHRFGVEQRL--------ALRE------KGENPHVLVMTATP-IPRTLAMTAYGDLDVSVIDELPPG 443 (681)
T ss_pred hhcccce-EEEechhhhhHHHHH--------HHHh------cCCCCCEEEEeCCC-CHHHHHHHHcCCCceEEEecCCCC
Confidence 3679999 999999998643222 1111 14568999999994 344443322111111110101111
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCC--------hhHHHHHHHHHHHhc
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCAT--------RKGVEHTCTILRQEM 192 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s--------Rk~~e~~A~~l~~~~ 192 (217)
|. |+...+.. .. . . ...+..+.+.+.++.+++|||+. .+.++.++..+.+..
T Consensus 444 r~-~i~~~~~~--~~---~-~------~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~ 503 (681)
T PRK10917 444 RK-PITTVVIP--DS---R-R------DEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF 503 (681)
T ss_pred CC-CcEEEEeC--cc---c-H------HHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHC
Confidence 21 33332221 10 0 0 11123333445678899999994 455667777777654
No 54
>PRK09694 helicase Cas3; Provisional
Probab=98.12 E-value=1.6e-05 Score=77.93 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 158 LKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 158 ~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
+..+++.+.+++++||||||.+.|+.+++.|.+..
T Consensus 550 l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~ 584 (878)
T PRK09694 550 LQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELN 584 (878)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhC
Confidence 34455556678999999999999999999998753
No 55
>KOG0340|consensus
Probab=98.11 E-value=1.2e-05 Score=70.38 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=79.5
Q ss_pred hhHHHHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-HHHHhhhcCCCCC-e
Q psy3103 42 PEDRTIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI-YDIALWLGFGKPT-V 119 (217)
Q Consensus 42 ~~~~~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~-~~~a~wL~~~~~~-~ 119 (217)
+..-...++.+++ +|+||++.+.+..+-..++.+.+-+ +.+.|.+.+|||+.+. .++ .++.... .
T Consensus 144 ~~~~~~~~~rlkf-lVlDEADrvL~~~f~d~L~~i~e~l---------P~~RQtLlfSATitd~i~ql---~~~~i~k~~ 210 (442)
T KOG0340|consen 144 LGVCSWIFQRLKF-LVLDEADRVLAGCFPDILEGIEECL---------PKPRQTLLFSATITDTIKQL---FGCPITKSI 210 (442)
T ss_pred Cccchhhhhceee-EEecchhhhhccchhhHHhhhhccC---------CCccceEEEEeehhhHHHHh---hcCCccccc
Confidence 3445688999999 9999999999988988988887653 5667999999999853 332 2332110 1
Q ss_pred eeec---CCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcC--CCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 120 YAQI---DDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSD--NKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 120 ~~~~---~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+.+ ++...+-.+.+.++..+.. .....++.++..+++ ++.++||+++.+.|+.++..+...
T Consensus 211 a~~~e~~~~vstvetL~q~yI~~~~~----------vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l 277 (442)
T KOG0340|consen 211 AFELEVIDGVSTVETLYQGYILVSID----------VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL 277 (442)
T ss_pred ceEEeccCCCCchhhhhhheeecchh----------hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh
Confidence 1111 1111122222222222211 011123444555544 789999999999999999988754
No 56
>KOG0949|consensus
Probab=98.10 E-value=2.2e-06 Score=82.88 Aligned_cols=63 Identities=30% Similarity=0.413 Sum_probs=55.3
Q ss_pred CCChhHHHHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhc
Q psy3103 39 GMSPEDRTIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLG 113 (217)
Q Consensus 39 ~l~~~~~~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~ 113 (217)
.++|.....+...++. ||+||+|.+|..+-|..||.++.- .++-+++||||++|+..+..|++
T Consensus 620 Llspp~~q~~cerIRy-iIfDEVH~iG~~ed~l~~Eqll~l-----------i~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 620 LLSPPHHQKFCERIRY-IIFDEVHLIGNEEDGLLWEQLLLL-----------IPCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred hcCchhhhhhhhcceE-EEechhhhccccccchHHHHHHHh-----------cCCCeeEEecccCCHHHHHHHHH
Confidence 4466777899999999 999999999999899999888752 45678999999999999999997
No 57
>KOG0327|consensus
Probab=98.08 E-value=1.1e-05 Score=71.05 Aligned_cols=140 Identities=12% Similarity=0.129 Sum_probs=84.4
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC-CHHHHHhhhcCCCCCeeeecCCCC-
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP-NIYDIALWLGFGKPTVYAQIDDSF- 127 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~-n~~~~a~wL~~~~~~~~~~~~~~~- 127 (217)
+.+++ +|+||+..+..-++-..++.+...+ +++.|.+.+|||+| ...++++-+..++. .+ ....+.
T Consensus 168 ~~iKm-fvlDEaDEmLs~gfkdqI~~if~~l---------p~~vQv~l~SAT~p~~vl~vt~~f~~~pv-~i-~vkk~~l 235 (397)
T KOG0327|consen 168 DGIKM-FVLDEADEMLSRGFKDQIYDIFQEL---------PSDVQVVLLSATMPSDVLEVTKKFMREPV-RI-LVKKDEL 235 (397)
T ss_pred cceeE-EeecchHhhhccchHHHHHHHHHHc---------CcchhheeecccCcHHHHHHHHHhccCce-EE-Eecchhh
Confidence 45999 9999999999867777777777664 78999999999999 56777766665541 11 111111
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc---cccCCHHHHHHH
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM---SIQTSPEVREIV 204 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~---~~~l~~~e~~~l 204 (217)
.--.+++.++..... .. ..++..+.+ +-.+++||||||+.+..+...|.... .......+..+.
T Consensus 236 tl~gikq~~i~v~k~---~k-------~~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R 302 (397)
T KOG0327|consen 236 TLEGIKQFYINVEKE---EK-------LDTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNER 302 (397)
T ss_pred hhhheeeeeeecccc---cc-------ccHHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhh
Confidence 111111111111111 00 123344433 56789999999999999999995443 111233344455
Q ss_pred HHHHhhccCC
Q psy3103 205 DKCMSNMMDN 214 (217)
Q Consensus 205 ~~~~~~i~d~ 214 (217)
+..+.+.+.+
T Consensus 303 ~~~~~ef~~g 312 (397)
T KOG0327|consen 303 DTLMREFRSG 312 (397)
T ss_pred hHHHHHhhcC
Confidence 5555555443
No 58
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.08 E-value=3.4e-05 Score=73.44 Aligned_cols=117 Identities=14% Similarity=0.018 Sum_probs=58.6
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCc
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
++++++ ||+||+|.++...|+..+ ... .....++++++|||.. ++.++-.+..+-........+..|
T Consensus 355 ~~~l~l-vVIDEaH~fg~~qr~~l~----~~~-------~~~~~~~~l~~SATp~-prtl~l~~~~~l~~~~i~~~p~~r 421 (630)
T TIGR00643 355 FKRLAL-VIIDEQHRFGVEQRKKLR----EKG-------QGGFTPHVLVMSATPI-PRTLALTVYGDLDTSIIDELPPGR 421 (630)
T ss_pred ccccce-EEEechhhccHHHHHHHH----Hhc-------ccCCCCCEEEEeCCCC-cHHHHHHhcCCcceeeeccCCCCC
Confidence 468899 999999998754333211 110 0013689999999943 333332221110000000001111
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCCh--------hHHHHHHHHHHHh
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATR--------KGVEHTCTILRQE 191 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sR--------k~~e~~A~~l~~~ 191 (217)
.|+...+... . . . ...+..+.+.+.++.+++|||+.. +.++.++..+.+.
T Consensus 422 -~~i~~~~~~~--~---~-~------~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~ 479 (630)
T TIGR00643 422 -KPITTVLIKH--D---E-K------DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA 479 (630)
T ss_pred -CceEEEEeCc--c---h-H------HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhh
Confidence 1332322211 0 0 0 112333444556788999999875 4566777777654
No 59
>KOG0346|consensus
Probab=98.03 E-value=7.4e-05 Score=67.14 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=78.7
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC-CHHHHHhhhcCCCCCeeeecCC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP-NIYDIALWLGFGKPTVYAQIDD 125 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~-n~~~~a~wL~~~~~~~~~~~~~ 125 (217)
..+..+++ +|+||++++.. +|.. .=+.++. ...++..|.+.+|||+. |...+.+.+-.+| .+ .-+..
T Consensus 166 ~~~~~l~~-LVvDEADLlls--fGYe--edlk~l~-----~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nP-vi-Lkl~e 233 (569)
T KOG0346|consen 166 EYLDSLSF-LVVDEADLLLS--FGYE--EDLKKLR-----SHLPRIYQCFLMSATLSDDVQALKKLFLHNP-VI-LKLTE 233 (569)
T ss_pred hhhhheee-EEechhhhhhh--cccH--HHHHHHH-----HhCCchhhheeehhhhhhHHHHHHHHhccCC-eE-EEecc
Confidence 55678999 99999999996 6654 2233332 33488999999999998 6777777766554 22 23333
Q ss_pred CCc--cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 126 SFR--PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 126 ~~R--p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
..- |-.+.++.+...+. +.|. .++.++++---.+++|||+||-..|..+-..+....
T Consensus 234 ~el~~~dqL~Qy~v~cse~---DKfl-------llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFG 292 (569)
T KOG0346|consen 234 GELPNPDQLTQYQVKCSEE---DKFL-------LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFG 292 (569)
T ss_pred ccCCCcccceEEEEEeccc---hhHH-------HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhC
Confidence 333 34455665555532 2221 122222211124689999999999999988876553
No 60
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=97.99 E-value=2.1e-06 Score=67.03 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=46.1
Q ss_pred ecccCCChhHHHHHHHH-------hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 35 YHHAGMSPEDRTIIEQL-------FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 35 ~~h~~l~~~~~~~~l~~-------v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
.+-.+.|++.....+.. +++ ||+||+|.+.+..++..+..++.+++. ..+.+++++|||++
T Consensus 96 ~~ilv~T~~~l~~~~~~~~~~~~~~~~-iViDE~h~l~~~~~~~~~~~i~~~~~~-------~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 96 ADILVTTPEQLLDLISNGKINISRLSL-IVIDEAHHLSDETFRAMLKSILRRLKR-------FKNIQIILLSATLP 163 (169)
T ss_dssp SSEEEEEHHHHHHHHHTTSSTGTTESE-EEEETHHHHHHTTHHHHHHHHHHHSHT-------TTTSEEEEEESSST
T ss_pred ccccccCcchhhcccccccccccccee-eccCcccccccccHHHHHHHHHHHhcC-------CCCCcEEEEeeCCC
Confidence 34444455555555544 899 999999999987788888888887543 24689999999998
No 61
>KOG4284|consensus
Probab=97.99 E-value=1.2e-05 Score=75.23 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=80.3
Q ss_pred HHHhhhhhHhhhhhhhcCC-CchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC-CHHH-HHhhhcCCCCCeeeecCC
Q psy3103 49 EQLFRSGYLMILVHLLGEE-SRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP-NIYD-IALWLGFGKPTVYAQIDD 125 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~-~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~-n~~~-~a~wL~~~~~~~~~~~~~ 125 (217)
...+++ +|+||++-|.+. .+-..+-.++..| +...|++++|||.| |.+. ++.++.... -+..-..
T Consensus 165 ~s~vrl-fVLDEADkL~~t~sfq~~In~ii~sl---------P~~rQv~a~SATYp~nLdn~Lsk~mrdp~--lVr~n~~ 232 (980)
T KOG4284|consen 165 MSHVRL-FVLDEADKLMDTESFQDDINIIINSL---------PQIRQVAAFSATYPRNLDNLLSKFMRDPA--LVRFNAD 232 (980)
T ss_pred ccceeE-EEeccHHhhhchhhHHHHHHHHHHhc---------chhheeeEEeccCchhHHHHHHHHhcccc--eeecccC
Confidence 458999 999999999984 4666666666654 77889999999999 6544 777775321 1111111
Q ss_pred CCccccceeEEEeecCCCC-CchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 126 SFRPVKLTKIVRGFPTKPS-QSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 126 ~~Rp~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
+.--..++++++..+.... ...+ ......+..+...+ +..++||||+....|+.+|..|....
T Consensus 233 d~~L~GikQyv~~~~s~nnsveem---rlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG 296 (980)
T KOG4284|consen 233 DVQLFGIKQYVVAKCSPNNSVEEM---RLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSG 296 (980)
T ss_pred CceeechhheeeeccCCcchHHHH---HHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccC
Confidence 2223355566554332211 1111 11112333444444 36689999999999999999997554
No 62
>KOG0343|consensus
Probab=97.98 E-value=2e-05 Score=72.53 Aligned_cols=122 Identities=15% Similarity=0.060 Sum_probs=90.1
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC-CHHHHHhhhcCCCCCe-eeecCCCC
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP-NIYDIALWLGFGKPTV-YAQIDDSF 127 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~-n~~~~a~wL~~~~~~~-~~~~~~~~ 127 (217)
.++.. +|+||++.+.|.++-..+..+++.| +++.|.+.+|||-. +..++++.--.+|... ++.-....
T Consensus 214 ~~lQm-LvLDEADR~LDMGFk~tL~~Ii~~l---------P~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~a 283 (758)
T KOG0343|consen 214 SNLQM-LVLDEADRMLDMGFKKTLNAIIENL---------PKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAA 283 (758)
T ss_pred CcceE-EEeccHHHHHHHhHHHHHHHHHHhC---------ChhheeeeeecccchhHHHHHHhhcCCCcEEEEecccccc
Confidence 37899 9999999999999999999999864 89999999999998 6788998644444211 11122244
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
.|..+.++++.++-..+ ...++..+... ...+.|||..|-+++..++...+++-
T Consensus 284 tP~~L~Q~y~~v~l~~K----------i~~L~sFI~sh-lk~K~iVF~SscKqvkf~~e~F~rlr 337 (758)
T KOG0343|consen 284 TPSNLQQSYVIVPLEDK----------IDMLWSFIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLR 337 (758)
T ss_pred ChhhhhheEEEEehhhH----------HHHHHHHHHhc-cccceEEEEehhhHHHHHHHHHHhcC
Confidence 67778777776664422 12234444443 36789999999999999999998776
No 63
>KOG0342|consensus
Probab=97.90 E-value=6.6e-05 Score=68.11 Aligned_cols=125 Identities=17% Similarity=0.207 Sum_probs=77.8
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC-CHHHHHhhhcCCCCCeeeecCC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP-NIYDIALWLGFGKPTVYAQIDD 125 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~-n~~~~a~wL~~~~~~~~~~~~~ 125 (217)
-+++++++ +|+||++.+.|.+|-.-++.++.-+ +...|..++|||++ -.++++.-.-.. ...+.+...
T Consensus 226 f~~r~~k~-lvlDEADrlLd~GF~~di~~Ii~~l---------pk~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d 294 (543)
T KOG0342|consen 226 FLFRNLKC-LVLDEADRLLDIGFEEDVEQIIKIL---------PKQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDD 294 (543)
T ss_pred chhhccce-eEeecchhhhhcccHHHHHHHHHhc---------cccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCC
Confidence 45678899 9999999999988877777777543 78899999999998 467777655322 122222222
Q ss_pred CCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHH
Q psy3103 126 SFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILR 189 (217)
Q Consensus 126 ~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~ 189 (217)
...+...+..-.++-......+| ..++..+......+++||||+|-..+...|..+.
T Consensus 295 ~~~~~The~l~Qgyvv~~~~~~f-------~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~ 351 (543)
T KOG0342|consen 295 GGERETHERLEQGYVVAPSDSRF-------SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLN 351 (543)
T ss_pred CCCcchhhcccceEEeccccchH-------HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHh
Confidence 22222221111111111111122 1234444444445899999999999999888887
No 64
>KOG0338|consensus
Probab=97.89 E-value=3.1e-05 Score=70.70 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=95.2
Q ss_pred ChHHHHHhhhhheecccCCChhHHH--------------------------HHHHHhhhhhHhhhhhhhcCCCchhHHHH
Q psy3103 22 DNKLKDMLRSSIGYHHAGMSPEDRT--------------------------IIEQLFRSGYLMILVHLLGEESRGPVLEA 75 (217)
Q Consensus 22 ~~~~~~~~~~~~~~~h~~l~~~~~~--------------------------~~l~~v~l~vViDEiH~l~~~~RG~~lE~ 75 (217)
.++|+--..+-+|+--++|.-+.-. -.+.++.. +|+||++.+.+..|-..+-.
T Consensus 272 ~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEV-LvlDEADRMLeegFademnE 350 (691)
T KOG0338|consen 272 TKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEV-LVLDEADRMLEEGFADEMNE 350 (691)
T ss_pred HHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeE-EEechHHHHHHHHHHHHHHH
Confidence 3556666666666666666543221 12568899 99999999999777777766
Q ss_pred HHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHh
Q psy3103 76 VVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMML 154 (217)
Q Consensus 76 ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~ 154 (217)
++. +| +.+.|.+.+|||+.. .++++.. ..++|..+|+-.+..++..|.+.++-..+.....+.
T Consensus 351 ii~----lc-----pk~RQTmLFSATMteeVkdL~sl-SL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRe------ 414 (691)
T KOG0338|consen 351 IIR----LC-----PKNRQTMLFSATMTEEVKDLASL-SLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDRE------ 414 (691)
T ss_pred HHH----hc-----cccccceeehhhhHHHHHHHHHh-hcCCCeEEEeCCccccchhhhHHHheeccccccccH------
Confidence 663 33 789999999999984 6777764 444455555444445666666666544433211110
Q ss_pred hHHHHHH-HHHhcCCCCeEEEeCChhHHHHHHHHHH
Q psy3103 155 SYKLKSI-IMQYSDNKPTLIFCATRKGVEHTCTILR 189 (217)
Q Consensus 155 ~~~~~~~-~~~~~~~~~~LVF~~sRk~~e~~A~~l~ 189 (217)
.-+..+ .+.+ ...++||+.|+++|..+-..+.
T Consensus 415 -a~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllG 447 (691)
T KOG0338|consen 415 -AMLASLITRTF--QDRTIVFVRTKKQAHRLRILLG 447 (691)
T ss_pred -HHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHH
Confidence 012222 2333 4579999999999999876664
No 65
>KOG0353|consensus
Probab=97.85 E-value=2e-05 Score=69.71 Aligned_cols=125 Identities=17% Similarity=0.203 Sum_probs=77.6
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC--HHHHHhhhcCCCCCeeeecCCCCc
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN--IYDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n--~~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
.+++ |-+||+|.-.. +|..+.--..-|.-+ .+.-++..++||+||-.| .++..+.|+... ++.|...+.
T Consensus 215 ~~~~-iaidevhccsq--wghdfr~dy~~l~il---krqf~~~~iigltatatn~vl~d~k~il~ie~---~~tf~a~fn 285 (695)
T KOG0353|consen 215 FFKL-IAIDEVHCCSQ--WGHDFRPDYKALGIL---KRQFKGAPIIGLTATATNHVLDDAKDILCIEA---AFTFRAGFN 285 (695)
T ss_pred eeEE-Eeecceeehhh--hCcccCcchHHHHHH---HHhCCCCceeeeehhhhcchhhHHHHHHhHHh---hheeecccC
Confidence 5678 99999999885 555443222222211 122477889999999886 677888887653 346666664
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
...+...+..-|.. .+++ .+.+.+.+..--.|+.-||||.|+++||++|..|....
T Consensus 286 r~nl~yev~qkp~n--~dd~------~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~g 341 (695)
T KOG0353|consen 286 RPNLKYEVRQKPGN--EDDC------IEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHG 341 (695)
T ss_pred CCCceeEeeeCCCC--hHHH------HHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcC
Confidence 44665554433322 1111 11223333222247789999999999999999997654
No 66
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.83 E-value=4e-05 Score=74.53 Aligned_cols=123 Identities=12% Similarity=0.154 Sum_probs=81.9
Q ss_pred HHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCC
Q psy3103 46 TIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDD 125 (217)
Q Consensus 46 ~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~ 125 (217)
+..+..+.. ||+||+|. |-.....++.-|+.+. ....+..++|.+|||+ |.+.|+.+++.-+ ++..
T Consensus 157 D~~Ls~ys~-vIiDEaHE-----RSl~tDilLgllk~~~--~~rr~DLKiIimSATl-d~~rfs~~f~~ap-----vi~i 222 (845)
T COG1643 157 DPLLSGYSV-VIIDEAHE-----RSLNTDILLGLLKDLL--ARRRDDLKLIIMSATL-DAERFSAYFGNAP-----VIEI 222 (845)
T ss_pred CcccccCCE-EEEcchhh-----hhHHHHHHHHHHHHHH--hhcCCCceEEEEeccc-CHHHHHHHcCCCC-----EEEe
Confidence 455789999 99999995 4455555555554432 3335569999999997 5677999998433 5556
Q ss_pred CCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHh--cCCCCeEEEeCChhHHHHHHHHHHH
Q psy3103 126 SFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQY--SDNKPTLIFCATRKGVEHTCTILRQ 190 (217)
Q Consensus 126 ~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sRk~~e~~A~~l~~ 190 (217)
+.|..|++..+..-.. .++. +...+..++... ...+.+|||-+..++-+.++..|.+
T Consensus 223 ~GR~fPVei~Y~~~~~----~d~~----l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~ 281 (845)
T COG1643 223 EGRTYPVEIRYLPEAE----ADYI----LLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEK 281 (845)
T ss_pred cCCccceEEEecCCCC----cchh----HHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHh
Confidence 6777777665421111 1111 123334444332 3467899999999999999999987
No 67
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.81 E-value=0.00012 Score=68.03 Aligned_cols=141 Identities=17% Similarity=0.098 Sum_probs=75.1
Q ss_pred HHHHHhhhhheecccCCChhHHHH----------------------HHHHhhhhhHhhhhhhhcCC-CchhHHHHH-HHH
Q psy3103 24 KLKDMLRSSIGYHHAGMSPEDRTI----------------------IEQLFRSGYLMILVHLLGEE-SRGPVLEAV-VCR 79 (217)
Q Consensus 24 ~~~~~~~~~~~~~h~~l~~~~~~~----------------------~l~~v~l~vViDEiH~l~~~-~RG~~lE~l-l~R 79 (217)
++.+.++..+.+-|+.++..++.. -++++++ |||||.|...-. ..++.+..- +..
T Consensus 44 ~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf~p~~~l~l-IIVDEeh~~sykq~~~p~y~ar~~a~ 122 (505)
T TIGR00595 44 RFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALFLPFKNLGL-IIVDEEHDSSYKQEEGPRYHARDVAV 122 (505)
T ss_pred HHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHcCcccCCCE-EEEECCCccccccccCCCCcHHHHHH
Confidence 444555566778888887754311 1568899 999999987632 234433210 111
Q ss_pred HHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecC--CCCccccceeEEEeecCCCCCchhHHHHHhhHH
Q psy3103 80 MRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQID--DSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYK 157 (217)
Q Consensus 80 L~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~--~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (217)
++.. ..+.++|++||| |.++.+.......- ...... ...++.| ...++..........+ ....
T Consensus 123 ~ra~------~~~~~vil~SAT-Psles~~~~~~g~~--~~~~l~~r~~~~~~p-~v~vid~~~~~~~~~l-----s~~l 187 (505)
T TIGR00595 123 YRAK------KFNCPVVLGSAT-PSLESYHNAKQKAY--RLLVLTRRVSGRKPP-EVKLIDMRKEPRQSFL-----SPEL 187 (505)
T ss_pred HHHH------hcCCCEEEEeCC-CCHHHHHHHhcCCe--EEeechhhhcCCCCC-eEEEEecccccccCCc-----cHHH
Confidence 1111 367899999999 88877665543210 000000 0112222 2333333221100001 0122
Q ss_pred HHHHHHHhcCCCCeEEEeCChhH
Q psy3103 158 LKSIIMQYSDNKPTLIFCATRKG 180 (217)
Q Consensus 158 ~~~~~~~~~~~~~~LVF~~sRk~ 180 (217)
+..+.+.+.+++|+|||+|+|-.
T Consensus 188 ~~~i~~~l~~g~qvLvflnrrGy 210 (505)
T TIGR00595 188 ITAIEQTLAAGEQSILFLNRRGY 210 (505)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcC
Confidence 34444567888999999999975
No 68
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=97.75 E-value=2e-05 Score=63.71 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=40.3
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN 104 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n 104 (217)
.++++.+ +|+||+|.+.+..+|..++.++.++ ..+.+++++|||+++
T Consensus 140 ~~~~l~~-lIvDE~h~~~~~~~~~~~~~~~~~l---------~~~~~~~~~SAT~~~ 186 (203)
T cd00268 140 DLSKVKY-LVLDEADRMLDMGFEDQIREILKLL---------PKDRQTLLFSATMPK 186 (203)
T ss_pred ChhhCCE-EEEeChHHhhccChHHHHHHHHHhC---------CcccEEEEEeccCCH
Confidence 3578899 9999999999877899988888764 468999999999994
No 69
>KOG0336|consensus
Probab=97.72 E-value=0.00013 Score=65.21 Aligned_cols=144 Identities=11% Similarity=0.061 Sum_probs=89.8
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
++.+.+ +|+||++.+.|.++.+.+..++--+ .+..|.+..|||.|. ...++.-+..++. . ++..+.
T Consensus 365 l~siTY-lVlDEADrMLDMgFEpqIrkilldi---------RPDRqtvmTSATWP~~VrrLa~sY~Kep~-~--v~vGsL 431 (629)
T KOG0336|consen 365 LASITY-LVLDEADRMLDMGFEPQIRKILLDI---------RPDRQTVMTSATWPEGVRRLAQSYLKEPM-I--VYVGSL 431 (629)
T ss_pred eeeeEE-EEecchhhhhcccccHHHHHHhhhc---------CCcceeeeecccCchHHHHHHHHhhhCce-E--EEeccc
Confidence 568899 9999999999999999988887654 488999999999994 6677776655541 1 222222
Q ss_pred cccc---ceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc---cccCCHHHH
Q psy3103 128 RPVK---LTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM---SIQTSPEVR 201 (217)
Q Consensus 128 Rp~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~---~~~l~~~e~ 201 (217)
--+. .++.++ .+.. .+. ...+...+...+.+.++||||..+--|..+...++-.. ..+....++
T Consensus 432 dL~a~~sVkQ~i~-v~~d---~~k------~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q 501 (629)
T KOG0336|consen 432 DLVAVKSVKQNII-VTTD---SEK------LEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQ 501 (629)
T ss_pred ceeeeeeeeeeEE-eccc---HHH------HHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhh
Confidence 1111 112221 1110 111 12334455566778899999999999988887775332 223334444
Q ss_pred HHHHHHHhhccCCC
Q psy3103 202 EIVDKCMSNMMDNK 215 (217)
Q Consensus 202 ~~l~~~~~~i~d~~ 215 (217)
-..++.++.++.+.
T Consensus 502 ~DrE~al~~~ksG~ 515 (629)
T KOG0336|consen 502 SDREMALEDFKSGE 515 (629)
T ss_pred hhHHHHHHhhhcCc
Confidence 44455555554443
No 70
>PHA02558 uvsW UvsW helicase; Provisional
Probab=97.69 E-value=0.00023 Score=66.04 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=33.7
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI 105 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~ 105 (217)
.+++++++ ||+||+|.+.+. .++.++.++ ++..+++|||||..+.
T Consensus 218 ~~~~~~~~-iIvDEaH~~~~~----~~~~il~~~---------~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 218 EWFDQFGM-VIVDECHLFTGK----SLTSIITKL---------DNCKFKFGLTGSLRDG 262 (501)
T ss_pred hhccccCE-EEEEchhcccch----hHHHHHHhh---------hccceEEEEeccCCCc
Confidence 46789999 999999999863 345555442 3456899999999753
No 71
>KOG0332|consensus
Probab=97.69 E-value=7.2e-05 Score=66.01 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=72.1
Q ss_pred HHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-HHHHhhhcCCCCCeeeecC
Q psy3103 46 TIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI-YDIALWLGFGKPTVYAQID 124 (217)
Q Consensus 46 ~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~-~~~a~wL~~~~~~~~~~~~ 124 (217)
..-++.++. +|+||+..+.+. +|..= -..|+... .+++.|++.+|||.... ..|+.-+-.++.... .-.
T Consensus 227 ~id~~kikv-fVlDEAD~Mi~t-qG~~D--~S~rI~~~-----lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~-Lk~ 296 (477)
T KOG0332|consen 227 CIDLEKIKV-FVLDEADVMIDT-QGFQD--QSIRIMRS-----LPRNQQLLLFSATFVEKVAAFALKIVPNANVII-LKR 296 (477)
T ss_pred hhChhhceE-EEecchhhhhhc-ccccc--cchhhhhh-----cCCcceEEeeechhHHHHHHHHHHhcCCCceee-eeh
Confidence 444678899 999999988874 44321 11233222 26799999999999864 457766655432211 111
Q ss_pred CCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 125 DSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 125 ~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
....--++++++.-++.. .+.|. .+..+...+ .-+++||||.||+.|..++..+.+..
T Consensus 297 eel~L~~IkQlyv~C~~~--~~K~~-------~l~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~G 354 (477)
T KOG0332|consen 297 EELALDNIKQLYVLCACR--DDKYQ-------ALVNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEG 354 (477)
T ss_pred hhccccchhhheeeccch--hhHHH-------HHHHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcC
Confidence 111111233332222211 11121 111122222 24689999999999999999998775
No 72
>KOG0337|consensus
Probab=97.67 E-value=0.00011 Score=65.85 Aligned_cols=124 Identities=23% Similarity=0.208 Sum_probs=71.6
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
-++.|++ ||+||+..|.+.++-..+..+++|+ +...|.+.+|||+|+ .-++++- |..++..+. .+-+
T Consensus 161 ~l~svey-VVfdEadrlfemgfqeql~e~l~rl---------~~~~QTllfSatlp~~lv~faka-Gl~~p~lVR-ldve 228 (529)
T KOG0337|consen 161 TLSSVEY-VVFDEADRLFEMGFQEQLHEILSRL---------PESRQTLLFSATLPRDLVDFAKA-GLVPPVLVR-LDVE 228 (529)
T ss_pred cccceee-eeehhhhHHHhhhhHHHHHHHHHhC---------CCcceEEEEeccCchhhHHHHHc-cCCCCceEE-eehh
Confidence 3678999 9999999999877778888888875 566799999999995 4555542 222111110 0000
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
.+-.+..+.. .+... + ..-...+..++...-..++++|||.|+..+|-+...+.+.-
T Consensus 229 tkise~lk~~-f~~~~---~-----a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g 285 (529)
T KOG0337|consen 229 TKISELLKVR-FFRVR---K-----AEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFG 285 (529)
T ss_pred hhcchhhhhh-eeeec---c-----HHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcC
Confidence 0000000000 00000 0 00011222223222335689999999999999988887654
No 73
>PRK09401 reverse gyrase; Reviewed
Probab=97.64 E-value=0.00015 Score=73.42 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.1
Q ss_pred CCCeEEEeCChhH---HHHHHHHHHHh
Q psy3103 168 NKPTLIFCATRKG---VEHTCTILRQE 191 (217)
Q Consensus 168 ~~~~LVF~~sRk~---~e~~A~~l~~~ 191 (217)
+.++||||+|++. |+.++..|...
T Consensus 328 ~~~~LIFv~t~~~~~~ae~l~~~L~~~ 354 (1176)
T PRK09401 328 GDGGLIFVPSDKGKEYAEELAEYLEDL 354 (1176)
T ss_pred CCCEEEEEecccChHHHHHHHHHHHHC
Confidence 4589999999888 99999999875
No 74
>KOG0339|consensus
Probab=97.60 E-value=0.00033 Score=64.18 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=76.5
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC-CHHHHHhhhcCCCCCeeeecCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP-NIYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~-n~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
.+.++.+ +|+||+..+.+.++-+.+..+...+ .+..|.+.+|||++ ..+.+++-+-.++...+ ..+-.
T Consensus 367 n~~rvS~-LV~DEadrmfdmGfe~qVrSI~~hi---------rpdrQtllFsaTf~~kIe~lard~L~dpVrvV-qg~vg 435 (731)
T KOG0339|consen 367 NLSRVSY-LVLDEADRMFDMGFEPQVRSIKQHI---------RPDRQTLLFSATFKKKIEKLARDILSDPVRVV-QGEVG 435 (731)
T ss_pred cceeeeE-EEEechhhhhccccHHHHHHHHhhc---------CCcceEEEeeccchHHHHHHHHHHhcCCeeEE-Eeehh
Confidence 3668999 9999999999988888877776653 58899999999998 56666665544432211 11111
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..--.+++.+.-++... ... .-.+..+. .+...+++|+|+.-+..+|+++..|...
T Consensus 436 ean~dITQ~V~V~~s~~--~Kl------~wl~~~L~-~f~S~gkvlifVTKk~~~e~i~a~Lklk 491 (731)
T KOG0339|consen 436 EANEDITQTVSVCPSEE--KKL------NWLLRHLV-EFSSEGKVLIFVTKKADAEEIAANLKLK 491 (731)
T ss_pred ccccchhheeeeccCcH--HHH------HHHHHHhh-hhccCCcEEEEEeccCCHHHHHHHhccc
Confidence 11112222222222110 011 11111111 2344679999999999999999888644
No 75
>KOG0922|consensus
Probab=97.39 E-value=0.00025 Score=66.49 Aligned_cols=122 Identities=12% Similarity=0.223 Sum_probs=81.0
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
..+..... ||+||+|. |-.+-..++--|+.+. +..+..++|.+|||+ |++.|++|++.-+ .+.-.
T Consensus 159 p~LskYsv-IIlDEAHE-----Rsl~TDiLlGlLKki~---~~R~~LklIimSATl-da~kfS~yF~~a~-----i~~i~ 223 (674)
T KOG0922|consen 159 PLLSKYSV-IILDEAHE-----RSLHTDILLGLLKKIL---KKRPDLKLIIMSATL-DAEKFSEYFNNAP-----ILTIP 223 (674)
T ss_pred CccccccE-EEEechhh-----hhhHHHHHHHHHHHHH---hcCCCceEEEEeeee-cHHHHHHHhcCCc-----eEeec
Confidence 34678889 99999994 6666666666666553 445779999999997 4888999997643 22334
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHH--hcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQ--YSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
.|--|+++.+...+ ..+|- ...+..++.. -...+-+|||-+++.+-|..+..+.+..
T Consensus 224 GR~fPVei~y~~~p----~~dYv-----~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~ 282 (674)
T KOG0922|consen 224 GRTFPVEILYLKEP----TADYV-----DAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERA 282 (674)
T ss_pred CCCCceeEEeccCC----chhhH-----HHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 55556655543322 12231 1222223222 2445679999999999999999998775
No 76
>KOG0926|consensus
Probab=97.34 E-value=0.00046 Score=66.18 Aligned_cols=133 Identities=13% Similarity=0.235 Sum_probs=77.2
Q ss_pred HHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHH-h---hcCCCCceEEEEeccCC--CHHHHHhhhcCCCCCe
Q psy3103 46 TIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQK-S---QRASQPIRFVAVSATIP--NIYDIALWLGFGKPTV 119 (217)
Q Consensus 46 ~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~-~---~~~~~~~riv~LSATl~--n~~~~a~wL~~~~~~~ 119 (217)
+-++..... ||+||+|.=.= .-..+-.+++|+-.+.. . ...-.+.++|.||||+. +..+-...+-..++
T Consensus 367 DflL~kYSv-IIlDEAHERSv--nTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP-- 441 (1172)
T KOG0926|consen 367 DFLLTKYSV-IILDEAHERSV--NTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP-- 441 (1172)
T ss_pred hHhhhhcee-EEechhhhccc--hHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCc--
Confidence 455677888 99999996442 22344555666544431 0 01223789999999986 22222222222222
Q ss_pred eeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhc--CCCCeEEEeCChhHHHHHHHHHHHhccc
Q psy3103 120 YAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYS--DNKPTLIFCATRKGVEHTCTILRQEMSI 194 (217)
Q Consensus 120 ~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sRk~~e~~A~~l~~~~~~ 194 (217)
++.-+-|..|..+++- -.. ..+| +.+++.+.+.-.+ ..+.+|||+.....+..+.+.|++..+.
T Consensus 442 --likVdARQfPVsIHF~---krT-~~DY-----i~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~ 507 (1172)
T KOG0926|consen 442 --LIKVDARQFPVSIHFN---KRT-PDDY-----IAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPE 507 (1172)
T ss_pred --eeeeecccCceEEEec---cCC-CchH-----HHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCcc
Confidence 2233455555555532 111 1222 2344555554332 3578999999999999999999999753
No 77
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.24 E-value=0.0029 Score=61.36 Aligned_cols=124 Identities=17% Similarity=0.136 Sum_probs=67.9
Q ss_pred hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH--HHHHhhhcCCCCCeeeecCCCCcc
Q psy3103 52 FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI--YDIALWLGFGKPTVYAQIDDSFRP 129 (217)
Q Consensus 52 v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~--~~~a~wL~~~~~~~~~~~~~~~Rp 129 (217)
-.+ +|+||+|++.+..-=..++.++.. +. ..+..+|.+|||+|.. +.+...++.... . ..... .
T Consensus 339 ~S~-vIlDE~h~~~~~~~~~~l~~~i~~---l~-----~~g~~ill~SATlP~~~~~~l~~~~~~~~~--~-~~~~~--~ 404 (733)
T COG1203 339 TSL-VILDEVHLYADETMLAALLALLEA---LA-----EAGVPVLLMSATLPPFLKEKLKKALGKGRE--V-VENAK--F 404 (733)
T ss_pred hhc-hhhccHHhhcccchHHHHHHHHHH---HH-----hCCCCEEEEecCCCHHHHHHHHHHHhcccc--e-ecccc--c
Confidence 456 999999999986311222333333 22 4678999999999964 335555544321 0 11000 1
Q ss_pred ccceeEEEeecCCCCCchhHHHHHh-hHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhcc
Q psy3103 130 VKLTKIVRGFPTKPSQSTFQFEMML-SYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEMS 193 (217)
Q Consensus 130 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~~ 193 (217)
.+..... .+..... ....... ......+......+++++|-|||.+.|..+...+....+
T Consensus 405 ~~~~~e~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~ 465 (733)
T COG1203 405 CPKEDEP-GLKRKER---VDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP 465 (733)
T ss_pred ccccccc-ccccccc---hhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC
Confidence 1100000 0000000 0000000 011233344567789999999999999999999998875
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.07 E-value=0.0028 Score=64.32 Aligned_cols=24 Identities=8% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCCeEEEeCCh---hHHHHHHHHHHHh
Q psy3103 168 NKPTLIFCATR---KGVEHTCTILRQE 191 (217)
Q Consensus 168 ~~~~LVF~~sR---k~~e~~A~~l~~~ 191 (217)
+.++||||+|+ +.|+.++..|.+.
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~ 352 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENH 352 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhC
Confidence 46899999999 9999999999865
No 79
>KOG0345|consensus
Probab=97.07 E-value=0.0013 Score=59.64 Aligned_cols=120 Identities=14% Similarity=0.063 Sum_probs=80.7
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCC-
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDS- 126 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~- 126 (217)
++++.+ +|+||++.+.|.++-..+..++++| +...|.=.+|||... .++++..--.++ ..+-+-..+
T Consensus 155 ~rsLe~-LVLDEADrLldmgFe~~~n~ILs~L---------PKQRRTGLFSATq~~~v~dL~raGLRNp-v~V~V~~k~~ 223 (567)
T KOG0345|consen 155 FRSLEI-LVLDEADRLLDMGFEASVNTILSFL---------PKQRRTGLFSATQTQEVEDLARAGLRNP-VRVSVKEKSK 223 (567)
T ss_pred ccccce-EEecchHhHhcccHHHHHHHHHHhc---------ccccccccccchhhHHHHHHHHhhccCc-eeeeeccccc
Confidence 448999 9999999999999999999999885 677788888999985 455665544443 222111111
Q ss_pred -CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHh--cCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 127 -FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQY--SDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 127 -~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
..|..+..++..+++. +.+..+++.+ ...+++|||-+|=..++-.+..+....
T Consensus 224 ~~tPS~L~~~Y~v~~a~-------------eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l 279 (567)
T KOG0345|consen 224 SATPSSLALEYLVCEAD-------------EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL 279 (567)
T ss_pred ccCchhhcceeeEecHH-------------HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHh
Confidence 2555566555544422 1122222222 235789999999999999998887664
No 80
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.98 E-value=0.00058 Score=53.47 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=38.6
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHH
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIA 109 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a 109 (217)
...+.+ +|+||+|.+....++..+..++.++ .+..+++++|||.++..+..
T Consensus 127 ~~~~~~-iIiDE~h~~~~~~~~~~~~~~~~~~---------~~~~~~v~~saT~~~~~~~~ 177 (201)
T smart00487 127 LSNVDL-VILDEAHRLLDGGFGDQLEKLLKLL---------PKNVQLLLLSATPPEEIENL 177 (201)
T ss_pred HhHCCE-EEEECHHHHhcCCcHHHHHHHHHhC---------CccceEEEEecCCchhHHHH
Confidence 335669 9999999999755777777776653 46789999999998554433
No 81
>KOG0341|consensus
Probab=96.98 E-value=0.0029 Score=56.47 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=80.8
Q ss_pred eecccCCChhHHH-------HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-H
Q psy3103 34 GYHHAGMSPEDRT-------IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-I 105 (217)
Q Consensus 34 ~~~h~~l~~~~~~-------~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~ 105 (217)
++|-.+-||..-. -.+.-+++ +.+||++.+.|.++...+..+.+-+ ....|.+.+|||+|. .
T Consensus 302 GvHivVATPGRL~DmL~KK~~sLd~CRy-L~lDEADRmiDmGFEddir~iF~~F---------K~QRQTLLFSATMP~KI 371 (610)
T KOG0341|consen 302 GVHIVVATPGRLMDMLAKKIMSLDACRY-LTLDEADRMIDMGFEDDIRTIFSFF---------KGQRQTLLFSATMPKKI 371 (610)
T ss_pred CeeEEEcCcchHHHHHHHhhccHHHHHH-hhhhhHHHHhhccchhhHHHHHHHH---------hhhhheeeeeccccHHH
Confidence 4455555654332 34567899 9999999999999988888888765 366899999999994 4
Q ss_pred HHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcC-CCCeEEEeCChhHHHHH
Q psy3103 106 YDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSD-NKPTLIFCATRKGVEHT 184 (217)
Q Consensus 106 ~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~LVF~~sRk~~e~~ 184 (217)
.-||+--- .+|+.++..--|-..-+-..+..+-.. ...+.++++-+.+ .-|+||||..+.++..+
T Consensus 372 Q~FAkSAL-------------VKPvtvNVGRAGAAsldViQevEyVkq-EaKiVylLeCLQKT~PpVLIFaEkK~DVD~I 437 (610)
T KOG0341|consen 372 QNFAKSAL-------------VKPVTVNVGRAGAASLDVIQEVEYVKQ-EAKIVYLLECLQKTSPPVLIFAEKKADVDDI 437 (610)
T ss_pred HHHHHhhc-------------ccceEEecccccccchhHHHHHHHHHh-hhhhhhHHHHhccCCCceEEEeccccChHHH
Confidence 44554322 234443332111110000000000000 0123344454433 56899999999999999
Q ss_pred HHHHHHh
Q psy3103 185 CTILRQE 191 (217)
Q Consensus 185 A~~l~~~ 191 (217)
..+|.-.
T Consensus 438 hEYLLlK 444 (610)
T KOG0341|consen 438 HEYLLLK 444 (610)
T ss_pred HHHHHHc
Confidence 9888533
No 82
>PRK14701 reverse gyrase; Provisional
Probab=96.95 E-value=0.0036 Score=65.31 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.2
Q ss_pred CCCeEEEeCChhHH---HHHHHHHHHh
Q psy3103 168 NKPTLIFCATRKGV---EHTCTILRQE 191 (217)
Q Consensus 168 ~~~~LVF~~sRk~~---e~~A~~l~~~ 191 (217)
+.+.||||+|++.+ +.+|..|.+.
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~ 356 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLED 356 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHC
Confidence 56899999999875 7889999865
No 83
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.012 Score=51.75 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=87.2
Q ss_pred hHHHHHhh-hhheecccCCChhHH-----------HHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCC
Q psy3103 23 NKLKDMLR-SSIGYHHAGMSPEDR-----------TIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRAS 90 (217)
Q Consensus 23 ~~~~~~~~-~~~~~~h~~l~~~~~-----------~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~ 90 (217)
++|+..+. +++...|+.-.+.-+ -.+-+.+.+ +||||++.+-=. -...++..+..-+ .
T Consensus 162 ~Rlk~aF~~~~I~~Lyg~S~~~fr~plvVaTtHQLlrFk~aFD~-liIDEVDAFP~~-~d~~L~~Av~~ar--------k 231 (441)
T COG4098 162 PRLKQAFSNCDIDLLYGDSDSYFRAPLVVATTHQLLRFKQAFDL-LIIDEVDAFPFS-DDQSLQYAVKKAR--------K 231 (441)
T ss_pred HHHHHhhccCCeeeEecCCchhccccEEEEehHHHHHHHhhccE-EEEecccccccc-CCHHHHHHHHHhh--------c
Confidence 57777777 888888877654432 256678899 999999998642 3345555555421 3
Q ss_pred CCceEEEEeccCCCHHHHHhhhcCCCCCeee---ecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHH-Hhc
Q psy3103 91 QPIRFVAVSATIPNIYDIALWLGFGKPTVYA---QIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIM-QYS 166 (217)
Q Consensus 91 ~~~riv~LSATl~n~~~~a~wL~~~~~~~~~---~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 166 (217)
..--+|.||||-++--+ .+-+..+. ..+. .| ..+|.|+-..++..+-.. .. -+.-+...+...++ ...
T Consensus 232 ~~g~~IylTATp~k~l~-r~~~~g~~-~~~klp~Rf--H~~pLpvPkf~w~~~~~k---~l-~r~kl~~kl~~~lekq~~ 303 (441)
T COG4098 232 KEGATIYLTATPTKKLE-RKILKGNL-RILKLPARF--HGKPLPVPKFVWIGNWNK---KL-QRNKLPLKLKRWLEKQRK 303 (441)
T ss_pred ccCceEEEecCChHHHH-HHhhhCCe-eEeecchhh--cCCCCCCCceEEeccHHH---Hh-hhccCCHHHHHHHHHHHh
Confidence 55667999999764221 11111110 0000 11 224444444444322110 00 00001112233333 446
Q ss_pred CCCCeEEEeCChhHHHHHHHHHHHhccc
Q psy3103 167 DNKPTLIFCATRKGVEHTCTILRQEMSI 194 (217)
Q Consensus 167 ~~~~~LVF~~sRk~~e~~A~~l~~~~~~ 194 (217)
.+.|++||+++-...|++|..+.+..+.
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~ 331 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPK 331 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCc
Confidence 6899999999999999999999777643
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.85 E-value=0.004 Score=59.95 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=48.1
Q ss_pred HHHHHhhhhheecccCCChhHHHH----------------------HHHHhhhhhHhhhhhhhcCC-CchhHH--HHHHH
Q psy3103 24 KLKDMLRSSIGYHHAGMSPEDRTI----------------------IEQLFRSGYLMILVHLLGEE-SRGPVL--EAVVC 78 (217)
Q Consensus 24 ~~~~~~~~~~~~~h~~l~~~~~~~----------------------~l~~v~l~vViDEiH~l~~~-~RG~~l--E~ll~ 78 (217)
++...++..+..-|+.++..++.. -++++++ ||+||.|..+-. ..++.+ ..+.
T Consensus 209 ~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~l-iVvDEeh~~s~~~~~~p~y~~r~va- 286 (679)
T PRK05580 209 RFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGL-IIVDEEHDSSYKQQEGPRYHARDLA- 286 (679)
T ss_pred HHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCE-EEEECCCccccccCcCCCCcHHHHH-
Confidence 344445566778888887754321 1457899 999999987642 234433 2221
Q ss_pred HHHhHHHhhcCCCCceEEEEeccCCCHHHHHh
Q psy3103 79 RMRTVQKSQRASQPIRFVAVSATIPNIYDIAL 110 (217)
Q Consensus 79 RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~ 110 (217)
.++.. ..+.+++++||| |.++.+..
T Consensus 287 ~~ra~------~~~~~~il~SAT-ps~~s~~~ 311 (679)
T PRK05580 287 VVRAK------LENIPVVLGSAT-PSLESLAN 311 (679)
T ss_pred HHHhh------ccCCCEEEEcCC-CCHHHHHH
Confidence 11111 477899999999 66665544
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.79 E-value=0.0034 Score=60.55 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=29.5
Q ss_pred cCCCCeEEEeCChhHHHHHHHHHHHhc-cccCCHHHHHHHHHHH
Q psy3103 166 SDNKPTLIFCATRKGVEHTCTILRQEM-SIQTSPEVREIVDKCM 208 (217)
Q Consensus 166 ~~~~~~LVF~~sRk~~e~~A~~l~~~~-~~~l~~~e~~~l~~~~ 208 (217)
.++.++||||.+...++.++..+.... ....+..+|+++-+..
T Consensus 494 ~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~F 537 (732)
T TIGR00603 494 QRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNF 537 (732)
T ss_pred hcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHH
Confidence 367899999999999999999884222 1124566665554444
No 86
>KOG0334|consensus
Probab=96.72 E-value=0.0022 Score=62.92 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=79.6
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDD 125 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~ 125 (217)
..++.+.+ +|+||++.+.|..+-++.-.+|.++ .+..|.|.+|||++. ...+|.-+--.| ..+ .+.
T Consensus 511 tnlrR~t~-lv~deaDrmfdmgfePq~~~Ii~nl---------rpdrQtvlfSatfpr~m~~la~~vl~~P-vei-iv~- 577 (997)
T KOG0334|consen 511 TNLRRVTY-LVLDEADRMFDMGFEPQITRILQNL---------RPDRQTVLFSATFPRSMEALARKVLKKP-VEI-IVG- 577 (997)
T ss_pred ccccccce-eeechhhhhheeccCcccchHHhhc---------chhhhhhhhhhhhhHHHHHHHHHhhcCC-eeE-EEc-
Confidence 55778889 9999999999988888887777765 588999999999996 455776554433 222 111
Q ss_pred CCccc---cceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 126 SFRPV---KLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 126 ~~Rp~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+.+ .+++.+.-.+.. ...| ..+..++....+..++||||.+...|-.+...|.+.
T Consensus 578 -~~svV~k~V~q~v~V~~~e--~eKf-------~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a 636 (997)
T KOG0334|consen 578 -GRSVVCKEVTQVVRVCAIE--NEKF-------LKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA 636 (997)
T ss_pred -cceeEeccceEEEEEecCc--hHHH-------HHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc
Confidence 1111 111222222211 0111 223444445556889999999999999999999744
No 87
>PRK13766 Hef nuclease; Provisional
Probab=96.58 E-value=0.0088 Score=58.24 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.5
Q ss_pred cCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 166 SDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 166 ~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..+.++||||.+++.|+.++..|...
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~ 388 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKE 388 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhC
Confidence 35779999999999999999999543
No 88
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=96.36 E-value=0.029 Score=51.39 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=32.1
Q ss_pred CCCCeEEEeCChhHHHHHHHHHHHh----c-cccCCHHHHHHHHHHHh
Q psy3103 167 DNKPTLIFCATRKGVEHTCTILRQE----M-SIQTSPEVREIVDKCMS 209 (217)
Q Consensus 167 ~~~~~LVF~~sRk~~e~~A~~l~~~----~-~~~l~~~e~~~l~~~~~ 209 (217)
++.+++|||.+...++.++..+... . ....+..|++.+-+..+
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFR 329 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHH
Confidence 5779999999999999999999755 2 33346667766655544
No 89
>KOG0920|consensus
Probab=96.20 E-value=0.0076 Score=59.24 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=73.5
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
..+.+++. ||+||+|.=.-+ ...+..++..+. ...++.++|.||||+. .+.|.+|+|..+ ++.-.
T Consensus 283 ~~l~~vth-iivDEVHER~i~--~DflLi~lk~lL------~~~p~LkvILMSAT~d-ae~fs~YF~~~p-----vi~i~ 347 (924)
T KOG0920|consen 283 PTLSGVTH-IIVDEVHERSIN--TDFLLILLKDLL------PRNPDLKVILMSATLD-AELFSDYFGGCP-----VITIP 347 (924)
T ss_pred cccccCce-eeeeeEEEccCC--cccHHHHHHHHh------hhCCCceEEEeeeecc-hHHHHHHhCCCc-----eEeec
Confidence 45778999 999999975532 223333333332 2259999999999987 888999998543 22223
Q ss_pred CccccceeEEE-------eecCCCCCch----hH---------HHHHhh-HHHHHHHHHh---cCCCCeEEEeCChhHHH
Q psy3103 127 FRPVKLTKIVR-------GFPTKPSQST----FQ---------FEMMLS-YKLKSIIMQY---SDNKPTLIFCATRKGVE 182 (217)
Q Consensus 127 ~Rp~~l~~~~~-------~~~~~~~~~~----~~---------~~~~~~-~~~~~~~~~~---~~~~~~LVF~~sRk~~e 182 (217)
.|.-|+..++. .+........ .. +...+. ..+..++..+ ...+.+|||-++-....
T Consensus 348 grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~ 427 (924)
T KOG0920|consen 348 GRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEIL 427 (924)
T ss_pred CCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHH
Confidence 34344444332 1111000000 00 000001 1122222222 34678999999999999
Q ss_pred HHHHHHHHh
Q psy3103 183 HTCTILRQE 191 (217)
Q Consensus 183 ~~A~~l~~~ 191 (217)
.+...|...
T Consensus 428 ~~~~~L~~~ 436 (924)
T KOG0920|consen 428 QLKELLEVN 436 (924)
T ss_pred HHHHHhhhc
Confidence 999888653
No 90
>KOG0924|consensus
Probab=96.02 E-value=0.012 Score=56.05 Aligned_cols=124 Identities=15% Similarity=0.225 Sum_probs=72.8
Q ss_pred HHHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecC
Q psy3103 45 RTIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQID 124 (217)
Q Consensus 45 ~~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~ 124 (217)
.+..+..... ||+||+|.=. .+...++--|+.. -......++|..|||+ |++.|+.|+|.-+ .|++
T Consensus 462 ~d~~L~kYSv-iImDEAHERs-----lNtDilfGllk~~---larRrdlKliVtSATm-~a~kf~nfFgn~p---~f~I- 527 (1042)
T KOG0924|consen 462 KDRDLDKYSV-IIMDEAHERS-----LNTDILFGLLKKV---LARRRDLKLIVTSATM-DAQKFSNFFGNCP---QFTI- 527 (1042)
T ss_pred hhhhhhheeE-EEechhhhcc-----cchHHHHHHHHHH---HHhhccceEEEeeccc-cHHHHHHHhCCCc---eeee-
Confidence 3566778899 9999999643 2222222222211 1113689999999997 6888999999433 2233
Q ss_pred CCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHH-h-cCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 125 DSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQ-Y-SDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 125 ~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
..|..|++..+-..+ ..+| ...++.+.+.- + ...+-.|||...+.+.|-++..|...+
T Consensus 528 -pGRTyPV~~~~~k~p----~eDY-----Veaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l 587 (1042)
T KOG0924|consen 528 -PGRTYPVEIMYTKTP----VEDY-----VEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKL 587 (1042)
T ss_pred -cCCccceEEEeccCc----hHHH-----HHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHH
Confidence 345555444322211 1222 11123333221 1 234679999999999999888887554
No 91
>KOG0348|consensus
Probab=95.84 E-value=0.0088 Score=55.37 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=45.9
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhh----cCCCCceEEEEeccCCC-HHHHHhh
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQ----RASQPIRFVAVSATIPN-IYDIALW 111 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~----~~~~~~riv~LSATl~n-~~~~a~w 111 (217)
++.++| +|+||++.|.|-+++..+..++.-+....... ..+...|-+.||||+.+ ...+++.
T Consensus 285 ~s~LRw-lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~ 351 (708)
T KOG0348|consen 285 FSRLRW-LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADL 351 (708)
T ss_pred eeeeeE-EEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhc
Confidence 557999 99999999999999999999998764322111 12234678999999984 5556654
No 92
>KOG0350|consensus
Probab=95.66 E-value=0.037 Score=50.90 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=68.5
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHh-------------------------hcCCCCceEEEEeccC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKS-------------------------QRASQPIRFVAVSATI 102 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~-------------------------~~~~~~~riv~LSATl 102 (217)
-++++++ +||||++.|.+..|-.++-.+++-++..-.+ -...++...+.+|||+
T Consensus 292 ~Lk~Lrf-LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satL 370 (620)
T KOG0350|consen 292 DLKHLRF-LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATL 370 (620)
T ss_pred chhhceE-EEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhh
Confidence 4789999 9999999999866655554444432211000 0123344567778888
Q ss_pred C-CHHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHH-HhhHHHHHHHHHhcCCCCeEEEeCChhH
Q psy3103 103 P-NIYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEM-MLSYKLKSIIMQYSDNKPTLIFCATRKG 180 (217)
Q Consensus 103 ~-n~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LVF~~sRk~ 180 (217)
. +|..+.+.--..| ..+.+..+ -...+..+..-......... .-...++..+.. .+..++|+|++|-..
T Consensus 371 sqdP~Kl~~l~l~~P-rl~~v~~~-------~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~-~k~~r~lcf~~S~~s 441 (620)
T KOG0350|consen 371 SQDPSKLKDLTLHIP-RLFHVSKP-------LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS-NKLNRTLCFVNSVSS 441 (620)
T ss_pred hcChHHHhhhhcCCC-ceEEeecc-------cceeeecChhhhhceeecccccchHhHHHHHHH-hhcceEEEEecchHH
Confidence 7 6766666533222 11111110 00111112110000000000 001123334433 357799999999999
Q ss_pred HHHHHHHHH
Q psy3103 181 VEHTCTILR 189 (217)
Q Consensus 181 ~e~~A~~l~ 189 (217)
+-.++..|.
T Consensus 442 a~Rl~~~L~ 450 (620)
T KOG0350|consen 442 ANRLAHVLK 450 (620)
T ss_pred HHHHHHHHH
Confidence 999999987
No 93
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=95.59 E-value=0.02 Score=54.68 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=51.8
Q ss_pred eEEEEeccCCCH-HHHHhhhcCCCCCeeeecCCCCcccccee-EEEeecCCCCCchhHHHHHhhHHHHHHHHH-hcCCCC
Q psy3103 94 RFVAVSATIPNI-YDIALWLGFGKPTVYAQIDDSFRPVKLTK-IVRGFPTKPSQSTFQFEMMLSYKLKSIIMQ-YSDNKP 170 (217)
Q Consensus 94 riv~LSATl~n~-~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 170 (217)
++.|||||.+.. +++.++++.+. ...+..+|..-.. ..+-+... ... ...+...+.. ...+.|
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~v-----v~IPt~kp~~r~~~~~~v~~t~----~~K-----~~aL~~~i~~~~~~~~p 475 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPV-----VRIPTNRPSQRRHLPDEVFLTA----AAK-----WAAVAARVRELHAQGRP 475 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCe-----EEeCCCCCccceecCCEEEeCH----HHH-----HHHHHHHHHHHHhcCCC
Confidence 688999999864 57999998763 3334455542111 11111110 000 1223333333 234789
Q ss_pred eEEEeCChhHHHHHHHHHHHhc
Q psy3103 171 TLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 171 ~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
+||||+|.+.|+.++..|.+..
T Consensus 476 vLIft~t~~~se~L~~~L~~~g 497 (656)
T PRK12898 476 VLVGTRSVAASERLSALLREAG 497 (656)
T ss_pred EEEEeCcHHHHHHHHHHHHHCC
Confidence 9999999999999999998664
No 94
>KOG0329|consensus
Probab=95.59 E-value=0.0026 Score=53.89 Aligned_cols=83 Identities=11% Similarity=0.099 Sum_probs=48.0
Q ss_pred hHHHHHhhhhheecccCCChh-HHHHHHHHhhhhhHhhhhhhhcCC-CchhHHHHHHHHHHhHHHhhcCCCCceEEEEec
Q psy3103 23 NKLKDMLRSSIGYHHAGMSPE-DRTIIEQLFRSGYLMILVHLLGEE-SRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSA 100 (217)
Q Consensus 23 ~~~~~~~~~~~~~~h~~l~~~-~~~~~l~~v~l~vViDEiH~l~~~-~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSA 100 (217)
..|+.|+++-|+..--++... ++.-.+++++. +|+||++.+.+. +--..++.+. .-.+..-|.+.+||
T Consensus 156 e~lk~~PhivVgTPGrilALvr~k~l~lk~vkh-FvlDEcdkmle~lDMrRDvQEif---------r~tp~~KQvmmfsa 225 (387)
T KOG0329|consen 156 ELLKNCPHIVVGTPGRILALVRNRSLNLKNVKH-FVLDECDKMLEQLDMRRDVQEIF---------RMTPHEKQVMMFSA 225 (387)
T ss_pred HHHhCCCeEEEcCcHHHHHHHHhccCchhhcce-eehhhHHHHHHHHHHHHHHHHHh---------hcCcccceeeeeee
Confidence 445556555555544444332 34456789999 999999976642 1101111111 11367789999999
Q ss_pred cCCC-HHHHHhhhcCC
Q psy3103 101 TIPN-IYDIALWLGFG 115 (217)
Q Consensus 101 Tl~n-~~~~a~wL~~~ 115 (217)
|+++ .+.+..-+--+
T Consensus 226 tlskeiRpvC~kFmQd 241 (387)
T KOG0329|consen 226 TLSKEIRPVCHKFMQD 241 (387)
T ss_pred ecchhhHHHHHhhhcC
Confidence 9984 45555444333
No 95
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.39 E-value=0.11 Score=50.28 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=80.3
Q ss_pred hHHHHHhhhhheecccCCChhHH-HHH---------------------HHHhhhhhHhhhhhhhc--CCC--chhHHHHH
Q psy3103 23 NKLKDMLRSSIGYHHAGMSPEDR-TII---------------------EQLFRSGYLMILVHLLG--EES--RGPVLEAV 76 (217)
Q Consensus 23 ~~~~~~~~~~~~~~h~~l~~~~~-~~~---------------------l~~v~l~vViDEiH~l~--~~~--RG~~lE~l 76 (217)
.++..-++..+..-|+.|++.++ +.| |+++++ ||+||=|--. ..+ |=..=+..
T Consensus 263 ~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGL-IIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 263 ARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGL-IIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred HHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccE-EEEeccccccccCCcCCCcCHHHHH
Confidence 46777788899999999998644 222 669999 9999999643 322 22222233
Q ss_pred HHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCC-ccccceeEEEeecCCCCCchhHHHHHhh
Q psy3103 77 VCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSF-RPVKLTKIVRGFPTKPSQSTFQFEMMLS 155 (217)
Q Consensus 77 l~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~-Rp~~l~~~~~~~~~~~~~~~~~~~~~~~ 155 (217)
+.|- ...++.+|.=||| |..+.+..-.... ........-. +..+.+..++............+ ..
T Consensus 342 ~~Ra--------~~~~~pvvLgSAT-PSLES~~~~~~g~--y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~l---S~ 407 (730)
T COG1198 342 VLRA--------KKENAPVVLGSAT-PSLESYANAESGK--YKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSL---SP 407 (730)
T ss_pred HHHH--------HHhCCCEEEecCC-CCHHHHHhhhcCc--eEEEEccccccccCCCcceEEeccccccccCccC---CH
Confidence 3331 1367889999999 6666555443221 1111111111 22233444444332211111001 12
Q ss_pred HHHHHHHHHhcCCCCeEEEeCChhHH
Q psy3103 156 YKLKSIIMQYSDNKPTLIFCATRKGV 181 (217)
Q Consensus 156 ~~~~~~~~~~~~~~~~LVF~~sRk~~ 181 (217)
..+..+-+.+.++.|+|+|.|.|--+
T Consensus 408 ~Ll~~i~~~l~~geQ~llflnRRGys 433 (730)
T COG1198 408 ALLEAIRKTLERGEQVLLFLNRRGYA 433 (730)
T ss_pred HHHHHHHHHHhcCCeEEEEEccCCcc
Confidence 23444555778899999999998654
No 96
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.28 E-value=0.0095 Score=43.62 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=29.5
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccC
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATI 102 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl 102 (217)
.+..+ +|+||+|.+......... .... .......+++++|||.
T Consensus 102 ~~~~~-iiiDE~h~~~~~~~~~~~---~~~~------~~~~~~~~~i~~saTp 144 (144)
T cd00046 102 KKLDL-LILDEAHRLLNQGFGLLG---LKIL------LKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCE-EEEeCHHHHhhcchHHHH---HHHH------hhCCccceEEEEeccC
Confidence 37888 999999999986443332 1111 1125778999999994
No 97
>KOG0923|consensus
Probab=95.28 E-value=0.076 Score=50.56 Aligned_cols=119 Identities=11% Similarity=0.140 Sum_probs=74.2
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCcc
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFRP 129 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~Rp 129 (217)
..-.. |||||+|. |--+...++.-++.++ +..+..+++..|||+ |++.|..|++.-+ +|. -..|-
T Consensus 377 asYSV-iiiDEAHE-----RTL~TDILfgLvKDIa---r~RpdLKllIsSAT~-DAekFS~fFDdap---IF~--iPGRR 441 (902)
T KOG0923|consen 377 ASYSV-IIVDEAHE-----RTLHTDILFGLVKDIA---RFRPDLKLLISSATM-DAEKFSAFFDDAP---IFR--IPGRR 441 (902)
T ss_pred cceeE-EEeehhhh-----hhhhhhHHHHHHHHHH---hhCCcceEEeecccc-CHHHHHHhccCCc---EEe--ccCcc
Confidence 35567 99999995 4444455555444443 335899999999995 7888999998654 333 34455
Q ss_pred ccceeEEEeecCCCCCchhHHHHHhhHHHHHHHH--HhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 130 VKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIM--QYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 130 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
.|+..++-..|+. +| +..++..++. .-...+-+|||-.....-|.....|...+
T Consensus 442 yPVdi~Yt~~PEA----dY-----ldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~ 497 (902)
T KOG0923|consen 442 YPVDIFYTKAPEA----DY-----LDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERC 497 (902)
T ss_pred cceeeecccCCch----hH-----HHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHH
Confidence 5655553333322 12 1112222221 22456789999999998888777776555
No 98
>KOG0344|consensus
Probab=95.28 E-value=0.039 Score=51.44 Aligned_cols=118 Identities=18% Similarity=0.109 Sum_probs=62.7
Q ss_pred HHHHhhhhhHhhhhhhhcCC-CchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEE-SRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~-~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
-+.+|.+ +|+||.+++.++ .+=-++..+++- | ..+.+++=++|||++ ..+.+|......... .+.-.
T Consensus 285 dl~~V~~-lV~dEaD~lfe~~~f~~Qla~I~sa----c----~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~-~vivg 352 (593)
T KOG0344|consen 285 DLSKVEW-LVVDEADLLFEPEFFVEQLADIYSA----C----QSPDIRVALFSATIS--VYVEEWAELIKSDLK-RVIVG 352 (593)
T ss_pred hhheeee-EeechHHhhhChhhHHHHHHHHHHH----h----cCcchhhhhhhcccc--HHHHHHHHHhhccce-eEEEe
Confidence 3678999 999999999986 333333333332 2 257888889999987 334455543211000 00001
Q ss_pred Ccccc---ceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcC--CCCeEEEeCChhHHHHHHHHHH
Q psy3103 127 FRPVK---LTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSD--NKPTLIFCATRKGVEHTCTILR 189 (217)
Q Consensus 127 ~Rp~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~LVF~~sRk~~e~~A~~l~ 189 (217)
.++.- +.+...+.- +. ...+..+...+.. .-|+|||+.|...|..+...|.
T Consensus 353 ~~~sa~~~V~QelvF~g-se-----------~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~ 408 (593)
T KOG0344|consen 353 LRNSANETVDQELVFCG-SE-----------KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELE 408 (593)
T ss_pred cchhHhhhhhhhheeee-cc-----------hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhh
Confidence 11111 111111000 00 0111222223333 4589999999999999999884
No 99
>KOG0352|consensus
Probab=95.21 E-value=0.052 Score=49.26 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=51.4
Q ss_pred HHHHhhhhheecccCCChhH-HHHHHH----------HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCc
Q psy3103 25 LKDMLRSSIGYHHAGMSPED-RTIIEQ----------LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPI 93 (217)
Q Consensus 25 ~~~~~~~~~~~~h~~l~~~~-~~~~l~----------~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~ 93 (217)
+++.-+..-++-..-+|||. ....|+ .+.+ +|+||+|.+.. +|..+.--..+|-.+. ...++.
T Consensus 104 ~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y-~vVDEAHCVSQ--WGHDFRPDYL~LG~LR---S~~~~v 177 (641)
T KOG0352|consen 104 MGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRY-IVVDEAHCVSQ--WGHDFRPDYLTLGSLR---SVCPGV 177 (641)
T ss_pred HHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeee-EEechhhhHhh--hccccCcchhhhhhHH---hhCCCC
Confidence 34444455555555566762 223332 4678 99999999985 6665443333333331 124778
Q ss_pred eEEEEeccCCC--HHHHHhhhcCCC
Q psy3103 94 RFVAVSATIPN--IYDIALWLGFGK 116 (217)
Q Consensus 94 riv~LSATl~n--~~~~a~wL~~~~ 116 (217)
--|+|+||-.- -+|+..-|....
T Consensus 178 pwvALTATA~~~VqEDi~~qL~L~~ 202 (641)
T KOG0352|consen 178 PWVALTATANAKVQEDIAFQLKLRN 202 (641)
T ss_pred ceEEeecccChhHHHHHHHHHhhcC
Confidence 88999999763 355666665543
No 100
>KOG0354|consensus
Probab=94.55 E-value=0.018 Score=55.40 Aligned_cols=55 Identities=7% Similarity=0.061 Sum_probs=37.1
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC-CHHHHHhhh
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP-NIYDIALWL 112 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~-n~~~~a~wL 112 (217)
|..+.+ +||||+|.-.+. ..+-.++..+.... ....|++|||||.+ +.+++.+.+
T Consensus 177 ls~fs~-iv~DE~Hra~kn---~~Y~~Vmr~~l~~k-----~~~~qILgLTASpG~~~~~v~~~I 232 (746)
T KOG0354|consen 177 LSDFSL-IVFDECHRTSKN---HPYNNIMREYLDLK-----NQGNQILGLTASPGSKLEQVQNVI 232 (746)
T ss_pred cceEEE-EEEccccccccc---ccHHHHHHHHHHhh-----hccccEEEEecCCCccHHHHHHHH
Confidence 778999 999999998764 34444444332221 34449999999998 455555544
No 101
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=94.47 E-value=0.18 Score=46.61 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=40.0
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC----HHHHHhhhcCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN----IYDIALWLGFGK 116 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n----~~~~a~wL~~~~ 116 (217)
+.++.+ +||||+|.=-++ ..+-.+..... +.+.+++++|||||=++ ..++.+-||.+.
T Consensus 129 ~~dv~~-lifDEAHRAvGn---yAYv~Va~~y~------~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~ 190 (542)
T COG1111 129 LDDVSL-LIFDEAHRAVGN---YAYVFVAKEYL------RSAKNPLILGLTASPGSDLEKIQEVVENLGIEK 190 (542)
T ss_pred hHHceE-EEechhhhccCc---chHHHHHHHHH------HhccCceEEEEecCCCCCHHHHHHHHHhCCcce
Confidence 568999 999999997764 23333333321 23689999999999874 344666667653
No 102
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.31 E-value=0.12 Score=49.76 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=26.5
Q ss_pred HHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 160 SIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 160 ~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+.....++.++||||+|++.|+.++..|.+.
T Consensus 434 eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~ 465 (655)
T TIGR00631 434 EIRQRVARNERVLVTTLTKKMAEDLTDYLKEL 465 (655)
T ss_pred HHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh
Confidence 33334567889999999999999999999876
No 103
>KOG0347|consensus
Probab=94.12 E-value=0.023 Score=52.88 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=37.3
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
.-++++++ +|+||++.+.+.+-=..++.++..|. -.+.....|.+.+|||+.
T Consensus 336 ~~~k~vkc-LVlDEaDRmvekghF~Els~lL~~L~----e~~~~~qrQTlVFSATlt 387 (731)
T KOG0347|consen 336 GNFKKVKC-LVLDEADRMVEKGHFEELSKLLKHLN----EEQKNRQRQTLVFSATLT 387 (731)
T ss_pred hhhhhceE-EEEccHHHHhhhccHHHHHHHHHHhh----hhhcccccceEEEEEEee
Confidence 45779999 99999999997432233444444442 145567889999999997
No 104
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=93.68 E-value=0.015 Score=45.39 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=26.6
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
...+ ||+||+|.+.+... +..++. .+...+++||||-.
T Consensus 146 ~~~~-vI~DEaH~~~~~~~---~~~i~~-----------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 146 KFDL-VIIDEAHHYPSDSS---YREIIE-----------FKAAFILGLTATPF 183 (184)
T ss_dssp SESE-EEEETGGCTHHHHH---HHHHHH-----------SSCCEEEEEESS-S
T ss_pred cCCE-EEEehhhhcCCHHH---HHHHHc-----------CCCCeEEEEEeCcc
Confidence 4568 99999999997421 333332 36788999999953
No 105
>KOG0349|consensus
Probab=93.20 E-value=0.1 Score=47.56 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHh--hhhcChHHHHHhhhhheecccCCCh-hHHHHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHh
Q psy3103 6 SPEVREIVDKCM--SNIMDNKLKDMLRSSIGYHHAGMSP-EDRTIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRT 82 (217)
Q Consensus 6 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~l~~-~~~~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~ 82 (217)
.|||++++..-+ .+-+-..+.++.++-|+..--.+-+ .+.--.+..+++ +|+||+..+.+.. +...|-|+..
T Consensus 315 np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF-lvlDead~lL~qg----y~d~I~r~h~ 389 (725)
T KOG0349|consen 315 NPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF-LVLDEADLLLGQG----YDDKIYRFHG 389 (725)
T ss_pred ChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE-EEecchhhhhhcc----cHHHHHHHhc
Confidence 577777666554 2223345555444444332221111 011123556999 9999999998632 2344444422
Q ss_pred -HHHhhcCCCCceEEEEeccCC
Q psy3103 83 -VQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 83 -l~~~~~~~~~~riv~LSATl~ 103 (217)
+..+...+.++|.+..|||+.
T Consensus 390 qip~~tsdg~rlq~~vCsatlh 411 (725)
T KOG0349|consen 390 QIPHMTSDGFRLQSPVCSATLH 411 (725)
T ss_pred cchhhhcCCcccccceeeeEEe
Confidence 111234557789999999997
No 106
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=92.88 E-value=0.34 Score=47.93 Aligned_cols=86 Identities=10% Similarity=0.109 Sum_probs=53.2
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCC-CchhHHHHHhhHHHHHHHHHhcCCCCe
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPS-QSTFQFEMMLSYKLKSIIMQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (217)
++-||++|... ..+|.+.++.+- +..|..||+.-.- .++.-. .....+ ...+..+.+....+.|+
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~V-----v~IPtnkp~~R~d----~~d~v~~t~~~k~----~av~~~i~~~~~~g~PV 447 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLEV-----VVIPTNRSMIRKD----EADLVYLTQADKF----QAIIEDVRECGVRKQPV 447 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCCE-----EECCCCCCcceec----CCCeEEcCHHHHH----HHHHHHHHHHHhCCCCE
Confidence 57889999874 566777777651 4456667654211 111100 000111 11233444556789999
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||||+|...+|.++..|.+..
T Consensus 448 LVgt~Sie~sE~ls~~L~~~g 468 (896)
T PRK13104 448 LVGTVSIEASEFLSQLLKKEN 468 (896)
T ss_pred EEEeCcHHHHHHHHHHHHHcC
Confidence 999999999999999998765
No 107
>COG1204 Superfamily II helicase [General function prediction only]
Probab=92.80 E-value=0.12 Score=50.49 Aligned_cols=34 Identities=29% Similarity=0.663 Sum_probs=28.1
Q ss_pred hhhhcChHHHHHhhhhheecccCCChhHHHHHHH
Q psy3103 17 MSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQ 50 (217)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~h~~l~~~~~~~~l~ 50 (217)
...+.+..|++|+..|+++||++|++++|...-+
T Consensus 301 ~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~ 334 (766)
T COG1204 301 TPTSEDEELAELVLRGVAFHHAGLPREDRQLVED 334 (766)
T ss_pred ccccchHHHHHHHHhCccccccCCCHHHHHHHHH
Confidence 3455668999999999999999999998765443
No 108
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=92.55 E-value=0.26 Score=47.91 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=52.5
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCC-CchhHHHHHhhHHHHHHHHHhcCCCCe
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPS-QSTFQFEMMLSYKLKSIIMQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (217)
++.|||+|... .++|.+.++.+- +..|..+|+.-.- .++.-. ...-.+ ...+..+.+....+.|+
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~v-----v~IPtnkp~~R~d----~~d~i~~t~~~k~----~ai~~~i~~~~~~grpv 408 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLEV-----VVVPTNRPVIRKD----LSDLVYKTEEEKW----KAVVDEIKERHAKGQPV 408 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCCE-----EEeCCCCCeeeee----CCCeEEcCHHHHH----HHHHHHHHHHHhcCCCE
Confidence 58899999974 456777777651 3446666643211 111100 000011 11223344455779999
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||||+|...+|.++..|.+..
T Consensus 409 LV~t~si~~se~ls~~L~~~g 429 (745)
T TIGR00963 409 LVGTTSVEKSELLSNLLKERG 429 (745)
T ss_pred EEEeCcHHHHHHHHHHHHHcC
Confidence 999999999999999998754
No 109
>KOG0925|consensus
Probab=91.38 E-value=4.2 Score=37.94 Aligned_cols=150 Identities=14% Similarity=0.266 Sum_probs=85.7
Q ss_pred hhhcChHHHHHhhhhheecccCCChh--HH------------HHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhH
Q psy3103 18 SNIMDNKLKDMLRSSIGYHHAGMSPE--DR------------TIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTV 83 (217)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~h~~l~~~--~~------------~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l 83 (217)
+.-||-+|.+-.+-+|.+..-..+.. ++ ..++...+. ||+||+|.=. ..-..++--|+..
T Consensus 112 adEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~v-iiLDeahERt-----lATDiLmGllk~v 185 (699)
T KOG0925|consen 112 ADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGV-IILDEAHERT-----LATDILMGLLKEV 185 (699)
T ss_pred HHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccE-EEechhhhhh-----HHHHHHHHHHHHH
Confidence 55677777776666666665444333 11 134557788 9999999532 2222232222222
Q ss_pred HHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHH
Q psy3103 84 QKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIM 163 (217)
Q Consensus 84 ~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (217)
. ...+..++|.+|||+- +..|..|++..+ +..+ +..-|+.+ + .+++. .+++ + ..++..+++
T Consensus 186 ~---~~rpdLk~vvmSatl~-a~Kfq~yf~n~P---ll~v-pg~~PvEi--~--Yt~e~--erDy-l----EaairtV~q 246 (699)
T KOG0925|consen 186 V---RNRPDLKLVVMSATLD-AEKFQRYFGNAP---LLAV-PGTHPVEI--F--YTPEP--ERDY-L----EAAIRTVLQ 246 (699)
T ss_pred H---hhCCCceEEEeecccc-hHHHHHHhCCCC---eeec-CCCCceEE--E--ecCCC--ChhH-H----HHHHHHHHH
Confidence 1 1247999999999975 555778887543 2122 22334332 2 12222 1222 1 223333433
Q ss_pred H--hcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 164 Q--YSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 164 ~--~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
. -...+-+|||-.+..+-|..++.|....
T Consensus 247 ih~~ee~GDilvFLtgeeeIe~aC~~i~re~ 277 (699)
T KOG0925|consen 247 IHMCEEPGDILVFLTGEEEIEDACRKISREV 277 (699)
T ss_pred HHhccCCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 2 2346789999999999999998887655
No 110
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=91.29 E-value=0.39 Score=47.25 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=50.6
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHH-HHHHHHhcCCCCe
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKL-KSIIMQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 171 (217)
++.|||.|... .++|.+.++.+- +..|..+|+.-.- .++.- |.....-...+ ..+.+....+.|+
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~v-----v~IPtnkp~~r~d----~~d~i----~~t~~~K~~aI~~~I~~~~~~grpV 433 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLDV-----VVIPTNRPMIRID----HPDLI----YKTEKEKFDAVVEDIKERHKKGQPV 433 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCCE-----EEcCCCCCeeeee----CCCeE----EECHHHHHHHHHHHHHHHHhcCCCE
Confidence 58899999974 455777776651 3445566643211 11100 00000001122 2223334678899
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||||+|...+|.++..|.+..
T Consensus 434 LIft~Si~~se~Ls~~L~~~g 454 (830)
T PRK12904 434 LVGTVSIEKSELLSKLLKKAG 454 (830)
T ss_pred EEEeCcHHHHHHHHHHHHHCC
Confidence 999999999999999998764
No 111
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=90.77 E-value=0.11 Score=51.94 Aligned_cols=40 Identities=23% Similarity=0.117 Sum_probs=27.3
Q ss_pred hHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC
Q psy3103 56 YLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN 104 (217)
Q Consensus 56 vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n 104 (217)
|||||+|.+... .-..+..++.-+ ..-+.+++.||||+|.
T Consensus 597 lVlDEVHaYD~~-~~~~L~rlL~w~--------~~lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 597 LILDEPDDYEPE-DLPALLRLVQLA--------GLLGSRVLLSSATLPP 636 (1110)
T ss_pred EEEECCccCCHH-HHHHHHHHHHHH--------HHcCCCEEEEeCCCCH
Confidence 999999999863 222233333321 2467899999999995
No 112
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.76 E-value=1.9 Score=41.40 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=69.6
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCC-CceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQ-PIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~-~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
|+++.+ ||+||=|.++= -.|++... -+. .+..+.|||| |=|+-+|=-.-.+-..-++.=-+..
T Consensus 382 F~~LgL-VIiDEQHRFGV----------~QR~~L~~----KG~~~Ph~LvMTAT-PIPRTLAlt~fgDldvS~IdElP~G 445 (677)
T COG1200 382 FHNLGL-VIIDEQHRFGV----------HQRLALRE----KGEQNPHVLVMTAT-PIPRTLALTAFGDLDVSIIDELPPG 445 (677)
T ss_pred ecceeE-EEEeccccccH----------HHHHHHHH----hCCCCCcEEEEeCC-CchHHHHHHHhccccchhhccCCCC
Confidence 568999 99999999883 34543332 244 6899999999 3333332111111000000000111
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhH--------HHHHHHHHHHhcccc----
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKG--------VEHTCTILRQEMSIQ---- 195 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~--------~e~~A~~l~~~~~~~---- 195 (217)
| .|+..+++..+ +. .+-+..+.+.+.+|.|+.+-|+==.+ |+.++..+....+..
T Consensus 446 R-kpI~T~~i~~~------~~------~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL 512 (677)
T COG1200 446 R-KPITTVVIPHE------RR------PEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGL 512 (677)
T ss_pred C-CceEEEEeccc------cH------HHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEE
Confidence 1 24444433211 11 12334555567789999999986544 445555555333221
Q ss_pred ----CCHHHHHHHHHHHhh
Q psy3103 196 ----TSPEVREIVDKCMSN 210 (217)
Q Consensus 196 ----l~~~e~~~l~~~~~~ 210 (217)
..++|++++.+..++
T Consensus 513 ~HGrm~~~eKd~vM~~Fk~ 531 (677)
T COG1200 513 VHGRMKPAEKDAVMEAFKE 531 (677)
T ss_pred EecCCChHHHHHHHHHHHc
Confidence 256777777666553
No 113
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=90.59 E-value=2.6 Score=41.91 Aligned_cols=95 Identities=14% Similarity=0.181 Sum_probs=50.2
Q ss_pred CCceEEEEeccCC---CHHHHHhhhcCCCCCeeeecCCCCccccc--eeEEEe---ecCCCCCchhHHHHHhhHHHHHHH
Q psy3103 91 QPIRFVAVSATIP---NIYDIALWLGFGKPTVYAQIDDSFRPVKL--TKIVRG---FPTKPSQSTFQFEMMLSYKLKSII 162 (217)
Q Consensus 91 ~~~riv~LSATl~---n~~~~a~wL~~~~~~~~~~~~~~~Rp~~l--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 162 (217)
....+|++|||+. +.+-+.+.+|.+.. .+..+. ..|-+. +..++. .+.....+.......+...+..++
T Consensus 594 ~~~~~il~SATL~~~~~~~~~~~~lGl~~~-~~~~~~--~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~ 670 (850)
T TIGR01407 594 KFKSLIFTSATLKFSHSFESFPQLLGLTDV-HFNTIE--PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEIT 670 (850)
T ss_pred cCCeEEEEecccccCCChHHHHHhcCCCcc-ccceec--CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 3456899999998 67889999997531 111221 111121 112221 111110111111111122222222
Q ss_pred HHhcCCCCeEEEeCChhHHHHHHHHHHH
Q psy3103 163 MQYSDNKPTLIFCATRKGVEHTCTILRQ 190 (217)
Q Consensus 163 ~~~~~~~~~LVF~~sRk~~e~~A~~l~~ 190 (217)
. ..++++|||++|.+..+.++..+..
T Consensus 671 ~--~~~g~~LVlftS~~~l~~v~~~L~~ 696 (850)
T TIGR01407 671 A--ITSPKILVLFTSYEMLHMVYDMLNE 696 (850)
T ss_pred H--hcCCCEEEEeCCHHHHHHHHHHHhh
Confidence 2 2356899999999999999999875
No 114
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=90.54 E-value=0.78 Score=45.05 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=49.4
Q ss_pred eEEEEeccCCCH-HHHHhhhcCCCCCeeeecCCCCccccceeE-EEeecCCCCCchhHHHHHhhHHHHHHHH-HhcCCCC
Q psy3103 94 RFVAVSATIPNI-YDIALWLGFGKPTVYAQIDDSFRPVKLTKI-VRGFPTKPSQSTFQFEMMLSYKLKSIIM-QYSDNKP 170 (217)
Q Consensus 94 riv~LSATl~n~-~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 170 (217)
++.|||.|.... ++|.+.++.+ + +..|..+|+.-.-. -..+... ... ...+...+. ....+.|
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l~----v-~~IPt~kp~~r~d~~~~i~~~~----~~K-----~~al~~~i~~~~~~~~p 430 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNME----V-VQIPTNRPIIRIDYPDKVFVTL----DEK-----YKAVIEEVKERHETGRP 430 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCCc----E-EECCCCCCcccccCCCeEEcCH----HHH-----HHHHHHHHHHHHhcCCC
Confidence 588999998643 4576666654 1 33455666432111 0001100 000 112222222 3356889
Q ss_pred eEEEeCChhHHHHHHHHHHHhc
Q psy3103 171 TLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 171 ~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
+||||+|++.|+.++..|.+..
T Consensus 431 vLIf~~t~~~se~l~~~L~~~g 452 (790)
T PRK09200 431 VLIGTGSIEQSETFSKLLDEAG 452 (790)
T ss_pred EEEEeCcHHHHHHHHHHHHHCC
Confidence 9999999999999999998753
No 115
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=90.31 E-value=0.86 Score=44.70 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=51.1
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHH-HHHHHHhcCCCCe
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKL-KSIIMQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 171 (217)
++.|||.|.+. ..+|.+..+.+ + +..|..+|+.-.- .++.- |.....-...+ ..+......+.|+
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~----v-v~IPtnkp~~r~d----~~d~i----~~t~~~K~~al~~~i~~~~~~g~pv 443 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME----V-ITIPTNRPVIRKD----SPDLL----YPTLDSKFNAVVKEIKERHAKGQPV 443 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC----E-EEcCCCCCeeeee----CCCeE----EcCHHHHHHHHHHHHHHHHhCCCCE
Confidence 68899999874 45577766654 1 3456666643211 11110 00000001122 2222344678999
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||||+|...++.++..|.+..
T Consensus 444 LI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 444 LVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred EEEeCcHHHHHHHHHHHHHCC
Confidence 999999999999999998764
No 116
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=90.27 E-value=1.6 Score=42.79 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=50.3
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHH-HHHHhcCCCCe
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKS-IIMQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 171 (217)
++.||++|... ..+|.+.++.+ + +..|..+|+.-.-+ ++.- |.....-...+.. +......+.|+
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~l~----v-~~IPt~kp~~r~d~----~d~i----~~~~~~K~~ai~~~i~~~~~~~~pv 427 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYSLS----V-VKIPTNKPIIRIDY----PDKI----YATLPEKLMATLEDVKEYHETGQPV 427 (762)
T ss_pred hhcccCCCChhHHHHHHHHhCCC----E-EEcCCCCCeeeeeC----CCeE----EECHHHHHHHHHHHHHHHhhCCCCE
Confidence 58899999753 45677766654 1 44566676543211 1100 0000000112222 22334668899
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||||+|+..++.++..|.+..
T Consensus 428 LIft~s~~~se~ls~~L~~~g 448 (762)
T TIGR03714 428 LLITGSVEMSEIYSELLLREG 448 (762)
T ss_pred EEEECcHHHHHHHHHHHHHCC
Confidence 999999999999999998653
No 117
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=90.26 E-value=1.5 Score=43.50 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=52.7
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCC-CchhHHHHHhhHHHHHHHHHhcCCCCe
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPS-QSTFQFEMMLSYKLKSIIMQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (217)
++.||+.|... ..+|.+.++.+- +..|..||+.-.- .++.-. .....+ ..-+..+.+....|.|+
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~V-----v~IPTnkp~~R~d----~~d~iy~t~~~K~----~Aii~ei~~~~~~GrpV 452 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLDT-----VVVPTNRPMVRKD----MADLVYLTADEKY----QAIIKDIKDCRERGQPV 452 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCCE-----EECCCCCCcccee----CCCcEEeCHHHHH----HHHHHHHHHHHHcCCCE
Confidence 57899999874 455777777651 4456667643221 111100 001111 11233444456789999
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||||.|...+|.++..|....
T Consensus 453 LV~t~sv~~se~ls~~L~~~g 473 (908)
T PRK13107 453 LVGTVSIEQSELLARLMVKEK 473 (908)
T ss_pred EEEeCcHHHHHHHHHHHHHCC
Confidence 999999999999999998654
No 118
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=89.62 E-value=0.3 Score=42.47 Aligned_cols=44 Identities=18% Similarity=0.004 Sum_probs=32.1
Q ss_pred hhhhHhhhhhhhcCCCc----hhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 53 RSGYLMILVHLLGEESR----GPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 53 ~l~vViDEiH~l~~~~R----G~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
.+ ||+||+|...+..- +......+..|... -++.|+|-.|||-.
T Consensus 174 gv-ivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~------LP~ARvvY~SATga 221 (303)
T PF13872_consen 174 GV-IVFDECHKAKNLSSGSKKPSKTGIAVLELQNR------LPNARVVYASATGA 221 (303)
T ss_pred ce-EEeccchhcCCCCccCccccHHHHHHHHHHHh------CCCCcEEEeccccc
Confidence 35 99999999997643 35556666665433 48899999999943
No 119
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=89.47 E-value=0.49 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.9
Q ss_pred CCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 168 NKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 168 ~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+++||||.|+..|+.++..+.+.
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHH
Confidence 468999999999999999887754
No 120
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=88.79 E-value=2.8 Score=41.21 Aligned_cols=138 Identities=8% Similarity=0.034 Sum_probs=71.8
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCch---hHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-HHHHhhhcCCCCCeeee
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRG---PVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI-YDIALWLGFGKPTVYAQ 122 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG---~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~-~~~a~wL~~~~~~~~~~ 122 (217)
..+.+.++ ||+||+-.+..--+. .+.+.++..|+.+. ..-.++|++-|++.+. -+|-+-+..+ ..+++
T Consensus 138 ~~l~~yDv-VIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI-----~~ak~VI~~DA~ln~~tvdFl~~~Rp~--~~i~v 209 (824)
T PF02399_consen 138 SLLDRYDV-VIIDEVMSVLNQLFSPTMRQREEVDNLLKELI-----RNAKTVIVMDADLNDQTVDFLASCRPD--ENIHV 209 (824)
T ss_pred ccccccCE-EEEehHHHHHHHHhHHHHhhHHHHHHHHHHHH-----HhCCeEEEecCCCCHHHHHHHHHhCCC--CcEEE
Confidence 34667899 999997544321111 14455555555443 4567899999999963 3333333222 23334
Q ss_pred cCCCCcccccee---EEE---e-------ecCC-CC-Cch------------hHHHHHhhHHHHHHHHHhcCCCCeEEEe
Q psy3103 123 IDDSFRPVKLTK---IVR---G-------FPTK-PS-QST------------FQFEMMLSYKLKSIIMQYSDNKPTLIFC 175 (217)
Q Consensus 123 ~~~~~Rp~~l~~---~~~---~-------~~~~-~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~~LVF~ 175 (217)
+.+.+....... .+. + ..+. .. ... .............+...+..|+.+.||+
T Consensus 210 I~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIcvfs 289 (824)
T PF02399_consen 210 IVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNAGKNICVFS 289 (824)
T ss_pred EEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhCCCcEEEEe
Confidence 434332211100 010 0 0000 00 000 0000000122345556778899999999
Q ss_pred CChhHHHHHHHHHHHhc
Q psy3103 176 ATRKGVEHTCTILRQEM 192 (217)
Q Consensus 176 ~sRk~~e~~A~~l~~~~ 192 (217)
.|.+.++.++......-
T Consensus 290 St~~~~~~v~~~~~~~~ 306 (824)
T PF02399_consen 290 STVSFAEIVARFCARFT 306 (824)
T ss_pred ChHHHHHHHHHHHHhcC
Confidence 99999999988887554
No 121
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=87.59 E-value=1.3 Score=44.32 Aligned_cols=86 Identities=9% Similarity=0.079 Sum_probs=50.3
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHH-HHhcCCCCe
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSII-MQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 171 (217)
++-||+.|... ..+|.+.++.+ + +..|..||+.-.- .++.- |.....-...+...+ .....+.|+
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L~----V-v~IPTnrP~~R~D----~~d~v----y~t~~eK~~Ali~~I~~~~~~grpV 601 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKLD----V-VVIPTNKPIVRKD----MDDLV----YKTRREKYNAIVLKVEELQKKGQPV 601 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCCc----E-EECCCCCCcceec----CCCeE----ecCHHHHHHHHHHHHHHHhhCCCCE
Confidence 47788888863 55677766654 1 4456667654211 11110 100000011222222 334568999
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||||+|+..+|.++..|.+..
T Consensus 602 LIft~Sve~sE~Ls~~L~~~g 622 (1025)
T PRK12900 602 LVGTASVEVSETLSRMLRAKR 622 (1025)
T ss_pred EEEeCcHHHHHHHHHHHHHcC
Confidence 999999999999999998664
No 122
>KOG0953|consensus
Probab=87.50 E-value=1.4 Score=41.49 Aligned_cols=120 Identities=10% Similarity=0.093 Sum_probs=68.5
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCccc
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFRPV 130 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~Rp~ 130 (217)
..+. .|||||+|+.|+.||+.|--.+.=+ + ...+.+.|=-|-++=.+.+.+-.|-+ + .+..-.|-.
T Consensus 275 ~yeV-AViDEIQmm~Dp~RGwAWTrALLGl---~-----AdEiHLCGepsvldlV~~i~k~TGd~----v-ev~~YeRl~ 340 (700)
T KOG0953|consen 275 PYEV-AVIDEIQMMRDPSRGWAWTRALLGL---A-----ADEIHLCGEPSVLDLVRKILKMTGDD----V-EVREYERLS 340 (700)
T ss_pred ceEE-EEehhHHhhcCcccchHHHHHHHhh---h-----hhhhhccCCchHHHHHHHHHhhcCCe----e-EEEeecccC
Confidence 4567 8999999999999999987766442 1 45666666555555556666554432 1 111222333
Q ss_pred cceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhccc-------cCCHHHHHH
Q psy3103 131 KLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEMSI-------QTSPEVREI 203 (217)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~~~-------~l~~~e~~~ 203 (217)
|+... +.+..-+..++. +-+ |-|+||++-..+...|-+.... .|+|+-+-+
T Consensus 341 pL~v~--------------------~~~~~sl~nlk~-GDC-vV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~a 398 (700)
T KOG0953|consen 341 PLVVE--------------------ETALGSLSNLKP-GDC-VVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLA 398 (700)
T ss_pred cceeh--------------------hhhhhhhccCCC-CCe-EEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHH
Confidence 33211 111111122222 233 4478999999888888766522 367776544
Q ss_pred HHH
Q psy3103 204 VDK 206 (217)
Q Consensus 204 l~~ 206 (217)
-+.
T Consensus 399 QA~ 401 (700)
T KOG0953|consen 399 QAA 401 (700)
T ss_pred HHH
Confidence 333
No 123
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=87.28 E-value=2 Score=31.15 Aligned_cols=24 Identities=29% Similarity=0.652 Sum_probs=22.1
Q ss_pred CCCCeEEEeCChhHHHHHHHHHHH
Q psy3103 167 DNKPTLIFCATRKGVEHTCTILRQ 190 (217)
Q Consensus 167 ~~~~~LVF~~sRk~~e~~A~~l~~ 190 (217)
.+.++||||+++..++.++..+.+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~ 50 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK 50 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh
Confidence 578999999999999999999976
No 124
>PRK00254 ski2-like helicase; Provisional
Probab=86.69 E-value=1.1 Score=43.62 Aligned_cols=40 Identities=38% Similarity=0.684 Sum_probs=30.5
Q ss_pred HHHHHHhhhhcChHHHHHhhhhheecccCCChhHHHHHHH
Q psy3103 11 EIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQ 50 (217)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~~~~~~l~ 50 (217)
++.........+..|++++..||++||++|++++|+.+.+
T Consensus 276 ~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~ 315 (720)
T PRK00254 276 ELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIED 315 (720)
T ss_pred HHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHH
Confidence 3333333445678999999999999999999999875544
No 125
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=86.65 E-value=0.34 Score=37.69 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHH--HHHhHHHhhcCCCCceEEEEeccCCCH
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVC--RMRTVQKSQRASQPIRFVAVSATIPNI 105 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~--RL~~l~~~~~~~~~~riv~LSATl~n~ 105 (217)
..+.++ ||+||+|...- ..+.. .|+.++ .....++|.+|||=|.-
T Consensus 93 ~~~yd~-II~DEcH~~Dp-------~sIA~rg~l~~~~----~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 93 LKNYDV-IIMDECHFTDP-------TSIAARGYLRELA----ESGEAKVIFMTATPPGS 139 (148)
T ss_dssp TTS-SE-EEECTTT--SH-------HHHHHHHHHHHHH----HTTS-EEEEEESS-TT-
T ss_pred ccCccE-EEEeccccCCH-------HHHhhheeHHHhh----hccCeeEEEEeCCCCCC
Confidence 358899 99999999653 12221 122222 13557899999997643
No 126
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=86.42 E-value=0.33 Score=40.94 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=29.5
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccC-C-CHHHHHh---hhcCC
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATI-P-NIYDIAL---WLGFG 115 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl-~-n~~~~a~---wL~~~ 115 (217)
+..+ ||+||+|.+.+. .+.... .+..+ .....++||||- . ++.++.. +|+.+
T Consensus 134 ~~~~-vIvDEaH~~k~~-~s~~~~-~l~~l----------~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~ 190 (299)
T PF00176_consen 134 KWDR-VIVDEAHRLKNK-DSKRYK-ALRKL----------RARYRWLLSGTPIQNSLEDLYSLLRFLNPD 190 (299)
T ss_dssp EEEE-EEETTGGGGTTT-TSHHHH-HHHCC----------CECEEEEE-SS-SSSGSHHHHHHHHHHCTT
T ss_pred ccee-EEEecccccccc-cccccc-ccccc----------ccceEEeeccccccccccccccchheeecc
Confidence 4777 999999999753 222222 22221 356778899993 2 4555444 55443
No 127
>PRK14873 primosome assembly protein PriA; Provisional
Probab=84.92 E-value=5.1 Score=38.78 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=45.6
Q ss_pred HHHHHhh-hhheecccCCChhHH-HHH---------------------HHHhhhhhHhhhhhhh--cCCCchhHH---HH
Q psy3103 24 KLKDMLR-SSIGYHHAGMSPEDR-TII---------------------EQLFRSGYLMILVHLL--GEESRGPVL---EA 75 (217)
Q Consensus 24 ~~~~~~~-~~~~~~h~~l~~~~~-~~~---------------------l~~v~l~vViDEiH~l--~~~~RG~~l---E~ 75 (217)
++..-++ ..+..-|+.+++.++ +.| ++++++ ||+||=|-- .+ .+++.+ +.
T Consensus 207 rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvFaP~~~LgL-IIvdEEhd~sykq-~~~p~yhaRdv 284 (665)
T PRK14873 207 ALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVFAPVEDLGL-VAIWDDGDDLLAE-PRAPYPHAREV 284 (665)
T ss_pred HHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEEeccCCCCE-EEEEcCCchhhcC-CCCCCccHHHH
Confidence 3444444 558889999999744 333 348899 999997743 33 345442 23
Q ss_pred HHHHHHhHHHhhcCCCCceEEEEeccCCCHHHH
Q psy3103 76 VVCRMRTVQKSQRASQPIRFVAVSATIPNIYDI 108 (217)
Q Consensus 76 ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~ 108 (217)
.+.|- - ..+..+|.-||| |..+.+
T Consensus 285 A~~Ra--~------~~~~~lvLgSaT-PSles~ 308 (665)
T PRK14873 285 ALLRA--H------QHGCALLIGGHA-RTAEAQ 308 (665)
T ss_pred HHHHH--H------HcCCcEEEECCC-CCHHHH
Confidence 33331 1 367889999999 444443
No 128
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=81.88 E-value=17 Score=35.39 Aligned_cols=94 Identities=15% Similarity=0.248 Sum_probs=47.8
Q ss_pred ceEEEEeccCCC---HHHHHhhhcCCC--CCeeeecCCCCcccccee-EEEeecCCC-CCchhHHHHHhhHHHHHHHHHh
Q psy3103 93 IRFVAVSATIPN---IYDIALWLGFGK--PTVYAQIDDSFRPVKLTK-IVRGFPTKP-SQSTFQFEMMLSYKLKSIIMQY 165 (217)
Q Consensus 93 ~riv~LSATl~n---~~~~a~wL~~~~--~~~~~~~~~~~Rp~~l~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 165 (217)
...|++|||+.. .+.+.+.+|.+. ......+.+.+-.-.... ++....... ..+.+ ...+...+..++.
T Consensus 457 ~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~--~~~~~~~i~~l~~-- 532 (697)
T PRK11747 457 PGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAH--TAEMAEFLPELLE-- 532 (697)
T ss_pred CEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHH--HHHHHHHHHHHHh--
Confidence 457899999974 456677778652 122223333221111111 111111110 11111 1222233333333
Q ss_pred cCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 166 SDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 166 ~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.++.+|||.+|.+.-+.++..+...
T Consensus 533 -~~gg~LVlFtSy~~l~~v~~~l~~~ 557 (697)
T PRK11747 533 -KHKGSLVLFASRRQMQKVADLLPRD 557 (697)
T ss_pred -cCCCEEEEeCcHHHHHHHHHHHHHh
Confidence 3445899999999999999888643
No 129
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=81.75 E-value=11 Score=38.50 Aligned_cols=164 Identities=13% Similarity=0.196 Sum_probs=92.3
Q ss_pred ccCChhHHHHHHHHhhhhcChHHHHHhhhhheecccCCCh-hHHHHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHH
Q psy3103 3 IQTSPEVREIVDKCMSNIMDNKLKDMLRSSIGYHHAGMSP-EDRTIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMR 81 (217)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~-~~~~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~ 81 (217)
.+++.|..+++....+-..| +=|++| ..|+. -+ |++++| +||||=|.+|=. + =.+|+
T Consensus 680 F~s~kE~~~il~~la~G~vD--------IvIGTH-rLL~kdv~----FkdLGL-lIIDEEqRFGVk----~----KEkLK 737 (1139)
T COG1197 680 FRSAKEQKEILKGLAEGKVD--------IVIGTH-RLLSKDVK----FKDLGL-LIIDEEQRFGVK----H----KEKLK 737 (1139)
T ss_pred cCCHHHHHHHHHHHhcCCcc--------EEEech-HhhCCCcE----EecCCe-EEEechhhcCcc----H----HHHHH
Confidence 34566777766655554444 223443 33433 24 789999 999999998842 1 13555
Q ss_pred hHHHhhcCCCCceEEEEecc-CCCHHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHH
Q psy3103 82 TVQKSQRASQPIRFVAVSAT-IPNIYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKS 160 (217)
Q Consensus 82 ~l~~~~~~~~~~riv~LSAT-l~n~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (217)
.+ ..++-++.|||| +|-.-.++ ..|...-..+ -.+-.+-.|++.++..+++. .+. ..
T Consensus 738 ~L------r~~VDvLTLSATPIPRTL~Ms-m~GiRdlSvI--~TPP~~R~pV~T~V~~~d~~----------~ir---eA 795 (1139)
T COG1197 738 EL------RANVDVLTLSATPIPRTLNMS-LSGIRDLSVI--ATPPEDRLPVKTFVSEYDDL----------LIR---EA 795 (1139)
T ss_pred HH------hccCcEEEeeCCCCcchHHHH-Hhcchhhhhc--cCCCCCCcceEEEEecCChH----------HHH---HH
Confidence 55 488999999999 33222222 1222210000 01111222444444333311 111 22
Q ss_pred HHHHhcCCCCeEEEeCChhHHHHHHHHHHHhcccc-----CCHHHHHHHHHHHhh
Q psy3103 161 IIMQYSDNKPTLIFCATRKGVEHTCTILRQEMSIQ-----TSPEVREIVDKCMSN 210 (217)
Q Consensus 161 ~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~~~~-----l~~~e~~~l~~~~~~ 210 (217)
+...+.+|+|+-.-+|.-.+-++++..|....+.. .+.....++++.+..
T Consensus 796 I~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~ 850 (1139)
T COG1197 796 ILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLD 850 (1139)
T ss_pred HHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHH
Confidence 34567789999888999999999999999888543 333333455555443
No 130
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=80.77 E-value=2.2 Score=37.20 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=30.0
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEE
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAV 98 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~L 98 (217)
++++ +||||+|.+..+ .+..=+.++.-||+++. .-.+-+||.
T Consensus 145 ~vrm-LIIDE~H~lLaG-s~~~qr~~Ln~LK~L~N----eL~ipiV~v 186 (302)
T PF05621_consen 145 GVRM-LIIDEFHNLLAG-SYRKQREFLNALKFLGN----ELQIPIVGV 186 (302)
T ss_pred CCcE-EEeechHHHhcc-cHHHHHHHHHHHHHHhh----ccCCCeEEe
Confidence 6778 999999998763 66667788888888851 234455554
No 131
>PRK02362 ski2-like helicase; Provisional
Probab=80.30 E-value=2.4 Score=41.40 Aligned_cols=31 Identities=32% Similarity=0.624 Sum_probs=27.0
Q ss_pred cChHHHHHhhhhheecccCCChhHHHHHHHH
Q psy3103 21 MDNKLKDMLRSSIGYHHAGMSPEDRTIIEQL 51 (217)
Q Consensus 21 ~~~~~~~~~~~~~~~~h~~l~~~~~~~~l~~ 51 (217)
.+..|++|+..||++||++|++++|+.+.+.
T Consensus 294 ~~~~L~~~l~~gva~hHagl~~~eR~~ve~~ 324 (737)
T PRK02362 294 TSKDLADCVAKGAAFHHAGLSREHRELVEDA 324 (737)
T ss_pred ccHHHHHHHHhCEEeecCCCCHHHHHHHHHH
Confidence 5688999999999999999999999766553
No 132
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=79.48 E-value=18 Score=36.45 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=50.2
Q ss_pred CceEEEEeccCC---CHHHHHhhhcCCCCC-eeeecCCCCcccc-ceeEEEe-ecCCCCCchhHHHHHhhHHHHHHHHHh
Q psy3103 92 PIRFVAVSATIP---NIYDIALWLGFGKPT-VYAQIDDSFRPVK-LTKIVRG-FPTKPSQSTFQFEMMLSYKLKSIIMQY 165 (217)
Q Consensus 92 ~~riv~LSATl~---n~~~~a~wL~~~~~~-~~~~~~~~~Rp~~-l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (217)
...+|++|||+. +.+-+.+.+|.+... ....+.+.+..-. ...++.. .+.....+.......+...+..++.
T Consensus 672 ~~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~-- 749 (928)
T PRK08074 672 KKSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAK-- 749 (928)
T ss_pred CCcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHH--
Confidence 346889999998 556678889875311 1223333222111 1111211 2211111111111111222222221
Q ss_pred cCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 166 SDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 166 ~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..++++|||.+|.+.-+.++..+...
T Consensus 750 ~~~g~~LVLFtSy~~l~~v~~~l~~~ 775 (928)
T PRK08074 750 ATKGRMLVLFTSYEMLKKTYYNLKNE 775 (928)
T ss_pred hCCCCEEEEECCHHHHHHHHHHHhhc
Confidence 24578999999999999999998754
No 133
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=79.43 E-value=9.8 Score=36.42 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=50.7
Q ss_pred CCceEEEEeccCCCHHHHHhhhcCCCCCee---eecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHh-c
Q psy3103 91 QPIRFVAVSATIPNIYDIALWLGFGKPTVY---AQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQY-S 166 (217)
Q Consensus 91 ~~~riv~LSATl~n~~~~a~wL~~~~~~~~---~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 166 (217)
...-.|++|||+.....+..+++..+.... ..+.+.+.... ......+........ ..........+.+.+ .
T Consensus 402 ~~~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~--~~~~~v~~~~~~~~~--~~~~~~~~~~i~~~~~~ 477 (654)
T COG1199 402 KVASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEE--QGQLYVPTDLPEPRE--PELLAKLAAYLREILKA 477 (654)
T ss_pred hcCcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhh--cceEeccccCCCCCC--hHHHHHHHHHHHHHHhh
Confidence 345689999999988888888876542221 11111111111 111111111111110 011122222222222 2
Q ss_pred CCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 167 DNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 167 ~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
..+++|||++|.+..+.++..+.+..
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~ 503 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDER 503 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcC
Confidence 24489999999999999999988654
No 134
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=78.55 E-value=0.27 Score=38.90 Aligned_cols=33 Identities=15% Similarity=-0.028 Sum_probs=21.9
Q ss_pred heecccCCChhHHHHHH---HHhhhhhHhhhhhhhcC
Q psy3103 33 IGYHHAGMSPEDRTIIE---QLFRSGYLMILVHLLGE 66 (217)
Q Consensus 33 ~~~~h~~l~~~~~~~~l---~~v~l~vViDEiH~l~~ 66 (217)
|..+|..+.+.-+..+. .+-.+ |||||+|.|.+
T Consensus 124 i~~y~yl~~~~~~~~~~~~~~~~~i-vI~DEAHNL~~ 159 (174)
T PF06733_consen 124 ICNYNYLFDPSIRKSLFGIDLKDNI-VIFDEAHNLED 159 (174)
T ss_dssp EEETHHHHSHHHHHHHCT--CCCEE-EEETTGGGCGG
T ss_pred EeCHHHHhhHHHHhhhccccccCcE-EEEecccchHH
Confidence 44555566665554442 34467 99999999987
No 135
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=78.54 E-value=16 Score=34.65 Aligned_cols=128 Identities=16% Similarity=0.047 Sum_probs=68.4
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHH----h------------hcCCCCceEEEEeccCCCHHHHHh
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQK----S------------QRASQPIRFVAVSATIPNIYDIAL 110 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~----~------------~~~~~~~riv~LSATl~n~~~~a~ 110 (217)
.+|..=-+ +||||-|.-.---+|. +..--+|=..+.. + .......|+|..|||=++.+ +..
T Consensus 327 DYfp~d~L-l~IDESHvTvPQi~gM-ynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~~q~i~VSATPg~~E-~e~ 403 (663)
T COG0556 327 DYFPDDFL-LFIDESHVTVPQIGGM-YNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKIPQTIYVSATPGDYE-LEQ 403 (663)
T ss_pred HhCCcceE-EEEeccccchHhhhch-hcccHHHHHHHHHhcCcCcccccCCCCCHHHHHHhcCCEEEEECCCChHH-HHh
Confidence 55566678 9999999764322221 1111122111100 0 00123468999999955443 322
Q ss_pred hhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHH
Q psy3103 111 WLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQ 190 (217)
Q Consensus 111 wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~ 190 (217)
- .. . +++.-.||+.+--=.+...+...+ +.+.+..+-....++..+||-+-|++.||.++.++..
T Consensus 404 s--~~--~---vveQiIRPTGLlDP~ievRp~~~Q--------vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e 468 (663)
T COG0556 404 S--GG--N---VVEQIIRPTGLLDPEIEVRPTKGQ--------VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKE 468 (663)
T ss_pred c--cC--c---eeEEeecCCCCCCCceeeecCCCc--------HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHh
Confidence 1 11 1 233335676652111112222111 1233444445667789999999999999999999987
Q ss_pred hc
Q psy3103 191 EM 192 (217)
Q Consensus 191 ~~ 192 (217)
..
T Consensus 469 ~g 470 (663)
T COG0556 469 LG 470 (663)
T ss_pred cC
Confidence 65
No 136
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=78.47 E-value=1 Score=45.18 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=29.3
Q ss_pred CCCeEEEeCChhHHHHHHHHHHHhc--c---c--cCCHHHHHHHHHHHh
Q psy3103 168 NKPTLIFCATRKGVEHTCTILRQEM--S---I--QTSPEVREIVDKCMS 209 (217)
Q Consensus 168 ~~~~LVF~~sRk~~e~~A~~l~~~~--~---~--~l~~~e~~~l~~~~~ 209 (217)
+.++||||+++..|..++..|.... + + ..+..+|++..+..+
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~ 541 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA 541 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh
Confidence 6789999999999999999996432 1 1 135566655544443
No 137
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=76.32 E-value=0.93 Score=43.75 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=21.9
Q ss_pred CCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 168 NKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 168 ~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
+++++|||.+|..|..+...+.+..
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~ 538 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEEL 538 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhc
Confidence 4789999999999999999887654
No 138
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=75.03 E-value=6.6 Score=37.87 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=25.2
Q ss_pred HHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 163 MQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 163 ~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
....++.+++|||+|++.|+.++..+.+.
T Consensus 441 ~~~~~g~~viIf~~t~~~ae~L~~~L~~~ 469 (652)
T PRK05298 441 KRVAKGERVLVTTLTKRMAEDLTDYLKEL 469 (652)
T ss_pred HHHhCCCEEEEEeCCHHHHHHHHHHHhhc
Confidence 34467889999999999999999999876
No 139
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.48 E-value=20 Score=34.82 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=48.2
Q ss_pred ceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCcccc---ceeEEEee-cCCCC-CchhHHH--HHhhHHHHHHH-HH
Q psy3103 93 IRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFRPVK---LTKIVRGF-PTKPS-QSTFQFE--MMLSYKLKSII-MQ 164 (217)
Q Consensus 93 ~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~Rp~~---l~~~~~~~-~~~~~-~~~~~~~--~~~~~~~~~~~-~~ 164 (217)
-.+|++|||+.-.+.+...||.+.+... ....+++ +...++.. +.+.. ...+..+ ......+...+ +.
T Consensus 442 ~svil~SgTL~p~~~~~~~Lg~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~ 517 (705)
T TIGR00604 442 RSVILASGTLSPLDAFPRNLGFNPVSQD----SPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEF 517 (705)
T ss_pred CEEEEecccCCcHHHHHHHhCCCCccce----ecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHH
Confidence 3588999999999999999997542211 1111122 11222211 11000 0001000 00111222222 22
Q ss_pred hc-CCCCeEEEeCChhHHHHHHHHHHH
Q psy3103 165 YS-DNKPTLIFCATRKGVEHTCTILRQ 190 (217)
Q Consensus 165 ~~-~~~~~LVF~~sRk~~e~~A~~l~~ 190 (217)
.+ -.+.+|||.+|...-+.++..+.+
T Consensus 518 ~~~~pgg~lvfFpSy~~l~~v~~~~~~ 544 (705)
T TIGR00604 518 SKIIPDGIVVFFPSYSYLENIVSTWKE 544 (705)
T ss_pred hhcCCCcEEEEccCHHHHHHHHHHHHh
Confidence 22 246799999999999988877654
No 140
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=72.07 E-value=2 Score=43.47 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=26.6
Q ss_pred cCCCCeEEEeCChhHHHHHHHHHHHhc------cccCCHHHHHHHHHHH
Q psy3103 166 SDNKPTLIFCATRKGVEHTCTILRQEM------SIQTSPEVREIVDKCM 208 (217)
Q Consensus 166 ~~~~~~LVF~~sRk~~e~~A~~l~~~~------~~~l~~~e~~~l~~~~ 208 (217)
..+.++|||+........+...+.... +...+..+|+..-+..
T Consensus 485 ~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~F 533 (1033)
T PLN03142 485 ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAF 533 (1033)
T ss_pred hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHh
Confidence 457899999998877777766665332 2224556665444444
No 141
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=70.45 E-value=30 Score=34.47 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=47.3
Q ss_pred CCceEEEEeccCC--CHHHHHhhhcCCCCCeeeecCCCCccccceeEEE---eecCCCCCchhHHHHHhhHHHHHHHHHh
Q psy3103 91 QPIRFVAVSATIP--NIYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVR---GFPTKPSQSTFQFEMMLSYKLKSIIMQY 165 (217)
Q Consensus 91 ~~~riv~LSATl~--n~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (217)
....+|+.|||++ +..++.+.+|.+... .......+ .-+..++ ..+.....++......+...+..+ .
T Consensus 572 ~~~~~i~tSATL~v~~~f~~~~~lGl~~~~-~~~~~~~~---~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~---~ 644 (820)
T PRK07246 572 ETCKTYFVSATLQISPRVSLADLLGFEEYL-FHKIEKDK---KQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEEL---K 644 (820)
T ss_pred cCCeEEEEecccccCCCCcHHHHcCCCccc-eecCCCCh---HHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHH---H
Confidence 3457899999995 223488889875321 11111111 1111222 122111111111111122222222 2
Q ss_pred cCCCCeEEEeCChhHHHHHHHHHHH
Q psy3103 166 SDNKPTLIFCATRKGVEHTCTILRQ 190 (217)
Q Consensus 166 ~~~~~~LVF~~sRk~~e~~A~~l~~ 190 (217)
..++++|||.+|.+.-+.++..+..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~ 669 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQ 669 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhh
Confidence 4478999999999999999888864
No 142
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=70.44 E-value=30 Score=33.95 Aligned_cols=86 Identities=10% Similarity=0.036 Sum_probs=53.5
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCC-CchhHHHHHhhHHHHHHHHHhcCCCCe
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPS-QSTFQFEMMLSYKLKSIIMQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (217)
++-||+.|... .++|.+.++.+- +..|..+|+.-.- .++.-. .....+ ..-+..+.+..+.|.|+
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~V-----v~IPtnkp~~R~d----~~d~iy~t~~~k~----~Aii~ei~~~~~~GrPV 430 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLGV-----SVIPPNKPNIRED----EADRVYATAAEKN----DAIVEHIAEVHETGQPV 430 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCcE-----EECCCCCCceeec----CCCceEeCHHHHH----HHHHHHHHHHHHcCCCE
Confidence 58899999874 566888777651 3445666653211 111100 000011 11233344456789999
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||.|.|-..+|.++..|.+..
T Consensus 431 LVgt~sI~~SE~ls~~L~~~g 451 (764)
T PRK12326 431 LVGTHDVAESEELAERLRAAG 451 (764)
T ss_pred EEEeCCHHHHHHHHHHHHhCC
Confidence 999999999999999998774
No 143
>KOG0950|consensus
Probab=68.01 E-value=4.6 Score=40.27 Aligned_cols=37 Identities=41% Similarity=0.754 Sum_probs=30.9
Q ss_pred hhhcChHHHHHhhhhheecccCCChhHHHHHHHHhhh
Q psy3103 18 SNIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRS 54 (217)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~h~~l~~~~~~~~l~~v~l 54 (217)
..+.|.-++..+..|++|||++||.+.|..+-...+-
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~ 546 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFRE 546 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHHHh
Confidence 6678899999999999999999999988765544444
No 144
>PRK01172 ski2-like helicase; Provisional
Probab=67.37 E-value=5.6 Score=38.34 Aligned_cols=31 Identities=42% Similarity=0.840 Sum_probs=26.9
Q ss_pred hcChHHHHHhhhhheecccCCChhHHHHHHH
Q psy3103 20 IMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQ 50 (217)
Q Consensus 20 ~~~~~~~~~~~~~~~~~h~~l~~~~~~~~l~ 50 (217)
..++.|++++..||++||++|++++|..+.+
T Consensus 275 ~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~ 305 (674)
T PRK01172 275 VYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred cccHHHHHHHhcCEEEecCCCCHHHHHHHHH
Confidence 4578899999999999999999999876655
No 145
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=64.11 E-value=68 Score=29.61 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=67.3
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHh---------------HHHhhcCCCCceEEEEeccCC-CHHHHHh
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRT---------------VQKSQRASQPIRFVAVSATIP-NIYDIAL 110 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~---------------l~~~~~~~~~~riv~LSATl~-n~~~~a~ 110 (217)
.+++.+++ +|+|.++.+.=-.+ .|++.++..|.. ...-.+...-.|.|.+|+... +...+-.
T Consensus 157 DFLSSIEv-~iiD~ad~l~MQNW-~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~ 234 (442)
T PF06862_consen 157 DFLSSIEV-LIIDQADVLLMQNW-EHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFN 234 (442)
T ss_pred chhheeee-EeechhhHHHHhhH-HHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHH
Confidence 67899999 99999999875323 344444444322 211111223357888887654 2333221
Q ss_pred h-h-cCCCCCeeeecCC-----CCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhc---CCCCeEEEeCChhH
Q psy3103 111 W-L-GFGKPTVYAQIDD-----SFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYS---DNKPTLIFCATRKG 180 (217)
Q Consensus 111 w-L-~~~~~~~~~~~~~-----~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~sRk~ 180 (217)
- . +......+..... ..-.+++.+.+..++....... .......-...++..+. ....+|||++|--+
T Consensus 235 ~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~--~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfD 312 (442)
T PF06862_consen 235 RHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADD--PDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFD 312 (442)
T ss_pred hhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchh--hhHHHHHHHHHHHHHhhhccCCCcEEEEecchhh
Confidence 1 1 1110000000000 1122344455554543321111 11111222233333333 45689999999887
Q ss_pred HHHHHHHHHHh
Q psy3103 181 VEHTCTILRQE 191 (217)
Q Consensus 181 ~e~~A~~l~~~ 191 (217)
=..+=..+.+.
T Consensus 313 fVRlRN~lk~~ 323 (442)
T PF06862_consen 313 FVRLRNYLKKE 323 (442)
T ss_pred hHHHHHHHHhc
Confidence 77777766643
No 146
>KOG0389|consensus
Probab=63.61 E-value=7.6 Score=38.14 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=38.6
Q ss_pred CChhHHHHHHHH--hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC-CHHHHHhhhc
Q psy3103 40 MSPEDRTIIEQL--FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP-NIYDIALWLG 113 (217)
Q Consensus 40 l~~~~~~~~l~~--v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~-n~~~~a~wL~ 113 (217)
.+.++=+.+|++ +.+ +|+||.|+|.+. -...|..+++ .+.+.|++....++- |..++-..|.
T Consensus 511 ~~~kdDRsflk~~~~n~-viyDEgHmLKN~-~SeRy~~LM~----------I~An~RlLLTGTPLQNNL~ELiSLL~ 575 (941)
T KOG0389|consen 511 ASSKDDRSFLKNQKFNY-VIYDEGHMLKNR-TSERYKHLMS----------INANFRLLLTGTPLQNNLKELISLLA 575 (941)
T ss_pred cCChHHHHHHHhccccE-EEecchhhhhcc-chHHHHHhcc----------ccccceEEeeCCcccccHHHHHHHHH
Confidence 355566788885 556 999999999973 1122332222 256677666555554 7887666554
No 147
>KOG1000|consensus
Probab=61.78 E-value=4.1 Score=38.02 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=26.6
Q ss_pred CCCCeEEEeCChhHHHHHHHHHHHhc------cccCCHHHHHHHHHHHh
Q psy3103 167 DNKPTLIFCATRKGVEHTCTILRQEM------SIQTSPEVREIVDKCMS 209 (217)
Q Consensus 167 ~~~~~LVF~~sRk~~e~~A~~l~~~~------~~~l~~~e~~~l~~~~~ 209 (217)
...+.+|||+-..--+.+-..+++.- +...++.+|+-+.+...
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ 539 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQ 539 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhc
Confidence 34577888887777777777776554 32344556655555443
No 148
>KOG4439|consensus
Probab=61.44 E-value=11 Score=36.63 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=35.0
Q ss_pred HHHHhhh-hhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccC-CC----HHHHHhhhcCCC
Q psy3103 48 IEQLFRS-GYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATI-PN----IYDIALWLGFGK 116 (217)
Q Consensus 48 ~l~~v~l-~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl-~n----~~~~a~wL~~~~ 116 (217)
.+..+.| +||+||+|.+.+ +-..-...+.+|+.. -.+|||+|= -| .-.+-.||++.+
T Consensus 458 pL~~I~W~RVILDEAH~IrN--~~tq~S~AVC~L~a~----------~RWclTGTPiqNn~~DvysLlrFLr~~p 520 (901)
T KOG4439|consen 458 PLARIAWSRVILDEAHNIRN--SNTQCSKAVCKLSAK----------SRWCLTGTPIQNNLWDVYSLLRFLRCPP 520 (901)
T ss_pred HHHHhhHHHhhhhhhhhhcc--cchhHHHHHHHHhhc----------ceeecccCccccchhHHHHHHHHhcCCC
Confidence 3444444 299999999997 445555556665322 348888773 22 344667777654
No 149
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=60.68 E-value=35 Score=34.20 Aligned_cols=86 Identities=13% Similarity=0.112 Sum_probs=51.7
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCC-CCchhHHHHHhhHHHHHHHHHhcCCCCe
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKP-SQSTFQFEMMLSYKLKSIIMQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (217)
++.|||+|... ..+|.+.++.+- +..|..+|+.-.- .++.- ....-.+ ..-+..+.+....|.|+
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~l~V-----v~IPTnkP~~R~D----~~d~iy~t~~~K~----~Aii~ei~~~~~~gqPV 429 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYNMRV-----NVVPTNKPVIRKD----EPDSIFGTKHAKW----KAVVKEVKRVHKKGQPI 429 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhCCCE-----EECCCCCCeeeee----CCCcEEEcHHHHH----HHHHHHHHHHHhcCCCE
Confidence 57899999764 345776666541 4456666643211 11110 0001111 11223344455779999
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||.|.|-..+|.++..|.+..
T Consensus 430 LVgT~SIe~SE~ls~~L~~~g 450 (925)
T PRK12903 430 LIGTAQVEDSETLHELLLEAN 450 (925)
T ss_pred EEEeCcHHHHHHHHHHHHHCC
Confidence 999999999999999998764
No 150
>PF13173 AAA_14: AAA domain
Probab=60.30 E-value=5.6 Score=29.50 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=27.4
Q ss_pred hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-HHHHhhh
Q psy3103 52 FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI-YDIALWL 112 (217)
Q Consensus 52 v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~-~~~a~wL 112 (217)
-.+ |++||+|.+.+ + ...+..+.. ..++.+++..+-..... .+.++.+
T Consensus 62 ~~~-i~iDEiq~~~~--~----~~~lk~l~d------~~~~~~ii~tgS~~~~l~~~~~~~l 110 (128)
T PF13173_consen 62 KKY-IFIDEIQYLPD--W----EDALKFLVD------NGPNIKIILTGSSSSLLSKDIAESL 110 (128)
T ss_pred CcE-EEEehhhhhcc--H----HHHHHHHHH------hccCceEEEEccchHHHhhcccccC
Confidence 477 99999999964 3 334433211 13567777665544433 3344444
No 151
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=55.09 E-value=14 Score=30.32 Aligned_cols=52 Identities=8% Similarity=0.021 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 44 DRTIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 44 ~~~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
+....++...+ ++||.+|.+.+. ...-+.+..-+..+. ..+.++|..|...|
T Consensus 90 ~~~~~~~~~Dl-L~iDDi~~l~~~--~~~q~~lf~l~n~~~-----~~~k~li~ts~~~P 141 (219)
T PF00308_consen 90 EFKDRLRSADL-LIIDDIQFLAGK--QRTQEELFHLFNRLI-----ESGKQLILTSDRPP 141 (219)
T ss_dssp HHHHHHCTSSE-EEEETGGGGTTH--HHHHHHHHHHHHHHH-----HTTSEEEEEESS-T
T ss_pred hhhhhhhcCCE-EEEecchhhcCc--hHHHHHHHHHHHHHH-----hhCCeEEEEeCCCC
Confidence 44566778999 999999999863 333345554444442 34567777776655
No 152
>KOG1002|consensus
Probab=53.98 E-value=4.2 Score=38.02 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=36.7
Q ss_pred HHHHHhhh-hhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccC-CC----HHHHHhhhcCCC
Q psy3103 47 IIEQLFRS-GYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATI-PN----IYDIALWLGFGK 116 (217)
Q Consensus 47 ~~l~~v~l-~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl-~n----~~~~a~wL~~~~ 116 (217)
+++..+++ +||+||+|.|.+ |-+...-.+--| ...+.+|||.|= -| .-.+-+||..+|
T Consensus 310 SlLHsi~~~RiIlDEAH~IK~--R~snTArAV~~L----------~tt~rw~LSGTPLQNrigElySLiRFL~i~P 373 (791)
T KOG1002|consen 310 SLLHSIKFYRIILDEAHNIKD--RQSNTARAVFAL----------ETTYRWCLSGTPLQNRIGELYSLIRFLNINP 373 (791)
T ss_pred chhhhceeeeeehhhhccccc--ccccHHHHHHhh----------HhhhhhhccCCcchhhHHHHHHHHHHHccCc
Confidence 45666655 389999999997 555554444433 224558899873 22 334667777765
No 153
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=52.54 E-value=62 Score=32.59 Aligned_cols=86 Identities=15% Similarity=0.226 Sum_probs=53.8
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCC-CchhHHHHHhhHHHHHHHHHhcCCCCe
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPS-QSTFQFEMMLSYKLKSIIMQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (217)
++-||+.|... ..+|.+.++.+- +..|..||+.-.- +++.-. .....+ ..-+..+.+....|.|+
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~V-----v~IPTnkP~~R~D----~~d~vy~t~~eK~----~Ai~~ei~~~~~~GrPV 452 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLDV-----VVIPPNKPLARKD----FNDLVYLTAEEKY----AAIITDIKECMALGRPV 452 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCCE-----EECCCCCCccccc----CCCeEEcCHHHHH----HHHHHHHHHHHhCCCCE
Confidence 57899999874 456777777652 4456667754211 111100 000111 12234444556789999
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||-+.|-...|.++..|.+..
T Consensus 453 LVGT~SVe~SE~ls~~L~~~g 473 (913)
T PRK13103 453 LVGTATIETSEHMSNLLKKEG 473 (913)
T ss_pred EEEeCCHHHHHHHHHHHHHcC
Confidence 999999999999999998665
No 154
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=50.82 E-value=47 Score=33.72 Aligned_cols=45 Identities=13% Similarity=-0.059 Sum_probs=26.4
Q ss_pred HHhhhhhHhhhhhhhcCCC-chhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 50 QLFRSGYLMILVHLLGEES-RGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~-RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
..+.+ ||+||+|.+.... .....-..+.. ++ ......++||||=-
T Consensus 271 ~~wdl-vIvDEAH~lk~~~~~~s~~y~~v~~---La-----~~~~~~LLLTATP~ 316 (956)
T PRK04914 271 AEWDL-LVVDEAHHLVWSEEAPSREYQVVEQ---LA-----EVIPGVLLLTATPE 316 (956)
T ss_pred cCCCE-EEEechhhhccCCCCcCHHHHHHHH---Hh-----hccCCEEEEEcCcc
Confidence 36788 9999999997421 11111112222 32 23356788999963
No 155
>KOG0390|consensus
Probab=50.49 E-value=12 Score=36.73 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=37.4
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC--CHHHHHhhhcC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP--NIYDIALWLGF 114 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~--n~~~~a~wL~~ 114 (217)
.....+++ +|.||.|.+.+. ....+ ..+.++ ...|.|.||.|.- |..++-..|..
T Consensus 372 il~~~~gl-LVcDEGHrlkN~-~s~~~-kaL~~l----------~t~rRVLLSGTp~QNdl~EyFnlL~f 428 (776)
T KOG0390|consen 372 ILLIRPGL-LVCDEGHRLKNS-DSLTL-KALSSL----------KTPRRVLLTGTPIQNDLKEYFNLLDF 428 (776)
T ss_pred HhcCCCCe-EEECCCCCccch-hhHHH-HHHHhc----------CCCceEEeeCCcccccHHHHHHHHhh
Confidence 34457889 999999999984 33332 233332 5578899999974 77777666653
No 156
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=49.97 E-value=53 Score=32.91 Aligned_cols=86 Identities=10% Similarity=0.092 Sum_probs=54.0
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEE-EeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCe
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIV-RGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (217)
++.||+.|... .++|.+.++.+- +..|..+|+.-.-.- .-|.. ....+ ..-+..+......|.|+
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~l~v-----v~IPtnkp~~R~d~~d~v~~t----~~~K~----~AI~~ei~~~~~~grPV 427 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYNLEV-----VCIPTHRPMLRKDLPDLIYKD----ELSKW----RAIADECLQMHQTGRPI 427 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCE-----EECCCCCCccceeCCCeEEeC----HHHHH----HHHHHHHHHHHhcCCCE
Confidence 58899999975 346777777652 445667775432210 00110 10111 11233445566789999
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||-|.|-..+|.++..|.+..
T Consensus 428 LIgT~SIe~SE~ls~~L~~~g 448 (870)
T CHL00122 428 LIGTTTIEKSELLSQLLKEYR 448 (870)
T ss_pred EEeeCCHHHHHHHHHHHHHcC
Confidence 999999999999999998664
No 157
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=49.30 E-value=93 Score=31.61 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=53.7
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHH-HhhHHHHHHHHHhcCCCCe
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEM-MLSYKLKSIIMQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 171 (217)
++.||+.|... ..+|.+.++.+ + +..|..+|+...- .++.- |.... -....+..+.+....|.|+
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~----v-~~iPt~kp~~r~d----~~d~i----y~t~~~k~~ai~~ei~~~~~~grPv 571 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLY----V-LQVPTFKPCLRID----HNDEF----YMTEREKYHAIVAEIASIHRKGNPI 571 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC----E-EECCCCCCceeee----CCCcE----ecCHHHHHHHHHHHHHHHHhCCCCE
Confidence 68899999875 45577777664 1 4456677744321 11110 10000 0112234455566789999
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||-|.|-...|.++..|.+..
T Consensus 572 Ligt~si~~se~ls~~L~~~g 592 (970)
T PRK12899 572 LIGTESVEVSEKLSRILRQNR 592 (970)
T ss_pred EEEeCcHHHHHHHHHHHHHcC
Confidence 999999999999999998654
No 158
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=47.97 E-value=69 Score=32.85 Aligned_cols=86 Identities=9% Similarity=0.075 Sum_probs=53.0
Q ss_pred eEEEEeccCC-CHHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCC-CCchhHHHHHhhHHHHHHHHHhcCCCCe
Q psy3103 94 RFVAVSATIP-NIYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKP-SQSTFQFEMMLSYKLKSIIMQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~-n~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (217)
++-||+.|.. ...+|.+.++.+ + +..|..||+.-.- .++.- ......+ ..-+..+.+....|.|+
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~----V-v~IPTnrP~~R~D----~~D~vy~t~~eK~----~Aii~ei~~~~~~GrPV 631 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLD----V-VVIPTNRPIARKD----KEDLVYKTKREKY----NAVIEEITELSEAGRPV 631 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC----E-EECCCCCCcceec----CCCeEecCHHHHH----HHHHHHHHHHHHCCCCE
Confidence 4778888886 356677777765 1 4456667653211 11110 0000111 12234455566789999
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||-|.|-...|.++..|.+..
T Consensus 632 LVGT~SVe~SE~lS~~L~~~g 652 (1112)
T PRK12901 632 LVGTTSVEISELLSRMLKMRK 652 (1112)
T ss_pred EEEeCcHHHHHHHHHHHHHcC
Confidence 999999999999999998654
No 159
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=47.76 E-value=1.1e+02 Score=26.03 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 158 LKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 158 ~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
.+..+..+..++..+.||.||+++.......++.+
T Consensus 53 A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~r~ 87 (252)
T COG0052 53 AYKFLRRIAANGGKILFVGTKKQAQEPVKEFAERT 87 (252)
T ss_pred HHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHh
Confidence 34555666667788999999999999988888776
No 160
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=47.19 E-value=13 Score=35.10 Aligned_cols=102 Identities=18% Similarity=0.149 Sum_probs=63.9
Q ss_pred ccCChhHHHHHHHHh-hhhcChHHHHHhhhhheecccCCC-hhHHHHHHHHhhhhhHhhhhhhhcC--CCchhHHHHHHH
Q psy3103 3 IQTSPEVREIVDKCM-SNIMDNKLKDMLRSSIGYHHAGMS-PEDRTIIEQLFRSGYLMILVHLLGE--ESRGPVLEAVVC 78 (217)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~l~-~~~~~~~l~~v~l~vViDEiH~l~~--~~RG~~lE~ll~ 78 (217)
|..+|.|+..+.... ++.-|+.+..-++ |-.+.-.+-+ +...+ -..+++ +++||+..+.+ ++-|.-++..-.
T Consensus 87 i~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~~l~--s~~~r~-~~~DEvD~~p~~~~~eGdp~~la~~ 162 (557)
T PF05876_consen 87 IRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPSNLR--SRPARY-LLLDEVDRYPDDVGGEGDPVELAEK 162 (557)
T ss_pred HHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCCcccc--cCCcCE-EEEechhhccccCccCCCHHHHHHH
Confidence 567888888887744 4444555555555 5555554443 22311 236788 99999999954 468999999999
Q ss_pred HHHhHHHhhcCCCCceEEEEe-ccCCCHHH-HHhhhcC
Q psy3103 79 RMRTVQKSQRASQPIRFVAVS-ATIPNIYD-IALWLGF 114 (217)
Q Consensus 79 RL~~l~~~~~~~~~~riv~LS-ATl~n~~~-~a~wL~~ 114 (217)
|.+.. .....++..| .|+..... -+.|...
T Consensus 163 R~~tf------~~~~K~~~~STPt~~~~~~I~~~~~~s 194 (557)
T PF05876_consen 163 RTKTF------GSNRKILRISTPTIEGTSRIERLYEES 194 (557)
T ss_pred HHhhh------ccCcEEEEeCCCCCCCCCHHHHHHHhC
Confidence 97544 3445555555 66664333 3444443
No 161
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=46.45 E-value=23 Score=32.30 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=38.3
Q ss_pred hHHHHHhhhhheecc----cCCCh-hHHHHHHHHh---------hhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhc
Q psy3103 23 NKLKDMLRSSIGYHH----AGMSP-EDRTIIEQLF---------RSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQR 88 (217)
Q Consensus 23 ~~~~~~~~~~~~~~h----~~l~~-~~~~~~l~~v---------~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~ 88 (217)
++|+..+...+..+. ++.+. ++-+.++..- .+ +.+||+|.++-..- ..++--
T Consensus 62 TTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~ti-LflDEIHRfnK~QQ----D~lLp~--------- 127 (436)
T COG2256 62 TTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTI-LFLDEIHRFNKAQQ----DALLPH--------- 127 (436)
T ss_pred HHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceE-EEEehhhhcChhhh----hhhhhh---------
Confidence 445555544444443 33333 3555555543 45 88999999995322 222222
Q ss_pred CCCCceEEEEeccCCCHH
Q psy3103 89 ASQPIRFVAVSATIPNIY 106 (217)
Q Consensus 89 ~~~~~riv~LSATl~n~~ 106 (217)
-.+-.++++-||-.||.
T Consensus 128 -vE~G~iilIGATTENPs 144 (436)
T COG2256 128 -VENGTIILIGATTENPS 144 (436)
T ss_pred -hcCCeEEEEeccCCCCC
Confidence 14456788888887753
No 162
>KOG0391|consensus
Probab=46.09 E-value=14 Score=38.29 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=22.2
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHH
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVC 78 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~ 78 (217)
++++ +|+||+|.|.+- +..+|+.++.
T Consensus 737 rWqy-LvLDEaqnIKnf-ksqrWQAlln 762 (1958)
T KOG0391|consen 737 RWQY-LVLDEAQNIKNF-KSQRWQALLN 762 (1958)
T ss_pred ccce-eehhhhhhhcch-hHHHHHHHhc
Confidence 6788 999999999984 7788888874
No 163
>PRK06893 DNA replication initiation factor; Validated
Probab=45.94 E-value=19 Score=29.63 Aligned_cols=18 Identities=0% Similarity=-0.363 Sum_probs=14.8
Q ss_pred HHHHhhhhhHhhhhhhhcC
Q psy3103 48 IEQLFRSGYLMILVHLLGE 66 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~ 66 (217)
.+.+..+ +++||+|.+.+
T Consensus 88 ~~~~~dl-LilDDi~~~~~ 105 (229)
T PRK06893 88 NLEQQDL-VCLDDLQAVIG 105 (229)
T ss_pred hcccCCE-EEEeChhhhcC
Confidence 3457789 99999999975
No 164
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=45.39 E-value=75 Score=32.08 Aligned_cols=86 Identities=9% Similarity=0.132 Sum_probs=53.6
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCC-CchhHHHHHhhHHHHHHHHHhcCCCCe
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPS-QSTFQFEMMLSYKLKSIIMQYSDNKPT 171 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (217)
++.||++|... ..+|.+.++.+- +..|..+|+.-.- .++.-. ...-.+ ..-+..+.+....|.|+
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~l~V-----v~IPTnkP~~R~d----~~d~vy~t~~~K~----~Ai~~ei~~~~~~GrPV 442 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYKLEV-----TVIPTNRPRRRQD----WPDQVYKTEIAKW----RAVANETAEMHKQGRPV 442 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhCCcE-----EEcCCCCCeeeec----CCCeEEcCHHHHH----HHHHHHHHHHHhCCCCE
Confidence 68899999874 455777777651 4456667654321 111100 001111 11233444556789999
Q ss_pred EEEeCChhHHHHHHHHHHHhc
Q psy3103 172 LIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 172 LVF~~sRk~~e~~A~~l~~~~ 192 (217)
||-|.|-...|.++..|.+..
T Consensus 443 LIgT~SVe~SE~ls~~L~~~g 463 (939)
T PRK12902 443 LVGTTSVEKSELLSALLQEQG 463 (939)
T ss_pred EEeeCCHHHHHHHHHHHHHcC
Confidence 999999999999999998764
No 165
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=44.14 E-value=3.5 Score=35.55 Aligned_cols=14 Identities=14% Similarity=-0.038 Sum_probs=12.1
Q ss_pred hhhhhHhhhhhhhcC
Q psy3103 52 FRSGYLMILVHLLGE 66 (217)
Q Consensus 52 v~l~vViDEiH~l~~ 66 (217)
-.. +||||+|.+.+
T Consensus 237 ~~~-lIiDEAHnL~d 250 (289)
T smart00488 237 DSI-VIFDEAHNLDN 250 (289)
T ss_pred ccE-EEEeCccChHH
Confidence 467 99999999986
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=44.14 E-value=3.5 Score=35.55 Aligned_cols=14 Identities=14% Similarity=-0.038 Sum_probs=12.1
Q ss_pred hhhhhHhhhhhhhcC
Q psy3103 52 FRSGYLMILVHLLGE 66 (217)
Q Consensus 52 v~l~vViDEiH~l~~ 66 (217)
-.. +||||+|.+.+
T Consensus 237 ~~~-lIiDEAHnL~d 250 (289)
T smart00489 237 DSI-VIFDEAHNLDN 250 (289)
T ss_pred ccE-EEEeCccChHH
Confidence 467 99999999986
No 167
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=44.07 E-value=22 Score=31.62 Aligned_cols=36 Identities=11% Similarity=0.156 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHH
Q psy3103 44 DRTIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQ 84 (217)
Q Consensus 44 ~~~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~ 84 (217)
..+..++.+++ +|+||+=|+.. ..++.+=.||+.+.
T Consensus 95 ~~~~~l~~~~~-lIiDEism~~~----~~l~~i~~~lr~i~ 130 (364)
T PF05970_consen 95 RLRERLRKADV-LIIDEISMVSA----DMLDAIDRRLRDIR 130 (364)
T ss_pred hhhhhhhhhee-eecccccchhH----HHHHHHHHhhhhhh
Confidence 45688999999 99999999986 35666666777664
No 168
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.03 E-value=25 Score=32.98 Aligned_cols=45 Identities=18% Similarity=0.379 Sum_probs=28.1
Q ss_pred HHHHHHHHh---------hhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEe
Q psy3103 44 DRTIIEQLF---------RSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVS 99 (217)
Q Consensus 44 ~~~~~l~~v---------~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LS 99 (217)
+.+.++.++ +. +||||+|++... ....++.- + ...++++.+|+.+
T Consensus 103 ~iR~l~~~~~~~p~~~~~kV-~iIDE~~~ls~~----a~naLLk~---L---Eepp~~~~fIlat 156 (509)
T PRK14958 103 DTRELLDNIPYAPTKGRFKV-YLIDEVHMLSGH----SFNALLKT---L---EEPPSHVKFILAT 156 (509)
T ss_pred HHHHHHHHHhhccccCCcEE-EEEEChHhcCHH----HHHHHHHH---H---hccCCCeEEEEEE
Confidence 456666543 58 999999999853 22333332 2 3445677777765
No 169
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=43.69 E-value=81 Score=29.65 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=23.3
Q ss_pred cCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 166 SDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 166 ~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
..+..+|||++-|..||.++..|.+..
T Consensus 364 ~~~~RvIVFT~yRdTae~i~~~L~~~~ 390 (542)
T COG1111 364 NGDSRVIVFTEYRDTAEEIVNFLKKIG 390 (542)
T ss_pred CCCceEEEEehhHhHHHHHHHHHHhcC
Confidence 345689999999999999999998665
No 170
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=43.20 E-value=20 Score=25.97 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=20.9
Q ss_pred hhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEec
Q psy3103 54 SGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSA 100 (217)
Q Consensus 54 l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSA 100 (217)
+ |||||+|.+. + ...+..|+.+. . ..++++|..+.
T Consensus 90 ~-lviDe~~~l~-~------~~~l~~l~~l~---~-~~~~~vvl~G~ 124 (131)
T PF13401_consen 90 L-LVIDEADHLF-S------DEFLEFLRSLL---N-ESNIKVVLVGT 124 (131)
T ss_dssp E-EEEETTHHHH-T------HHHHHHHHHHT---C-SCBEEEEEEES
T ss_pred E-EEEeChHhcC-C------HHHHHHHHHHH---h-CCCCeEEEEEC
Confidence 7 9999999985 1 33444444442 1 45566665543
No 171
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=41.93 E-value=50 Score=32.91 Aligned_cols=57 Identities=16% Similarity=0.075 Sum_probs=39.4
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-------HHHHHhhhcCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-------IYDIALWLGFG 115 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-------~~~~a~wL~~~ 115 (217)
+.++.. +||||+|.+.+. .-|..|.|+ | .+.++..-+.|+||.-+. .+.+.+-|+..
T Consensus 29 ~~~itg-iiv~~Ahr~~~~----~~eaFI~rl-y----r~~n~~gfIkafSdsP~~~~~g~~~l~~vmk~L~i~ 92 (814)
T TIGR00596 29 PELITG-ILVLRADRIIES----SQEAFILRL-Y----RQKNKTGFIKAFSDNPEAFTMGFSPLETKMRNLFLR 92 (814)
T ss_pred HHHccE-EEEeeccccccc----ccHHHHHHH-H----HHhCCCcceEEecCCCcccccchHHHHHHHHHhCcC
Confidence 567888 999999999754 335556554 2 123677889999998663 45566666655
No 172
>KOG0298|consensus
Probab=40.93 E-value=39 Score=35.15 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=38.2
Q ss_pred hhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEecc----CCCHHHHHhhhcCCC
Q psy3103 54 SGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSAT----IPNIYDIALWLGFGK 116 (217)
Q Consensus 54 l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSAT----l~n~~~~a~wL~~~~ 116 (217)
|+|++||++|+.. --+.....+.|| +....+|.|+| +.|.--+-.+|+..|
T Consensus 514 WRIclDEaQMves--ssS~~a~M~~rL----------~~in~W~VTGTPiq~Iddl~~Ll~fLk~~P 568 (1394)
T KOG0298|consen 514 WRICLDEAQMVES--SSSAAAEMVRRL----------HAINRWCVTGTPIQKIDDLFPLLEFLKLPP 568 (1394)
T ss_pred HHHhhhHHHhhcc--hHHHHHHHHHHh----------hhhceeeecCCchhhhhhhHHHHHHhcCCC
Confidence 3599999999996 345555555554 45667999999 778777888888765
No 173
>KOG1123|consensus
Probab=38.33 E-value=7 Score=36.68 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=19.9
Q ss_pred cCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 166 SDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 166 ~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
++|-++|||...--.-..+|..+.+.+
T Consensus 541 ~RgDKiIVFsDnvfALk~YAikl~Kpf 567 (776)
T KOG1123|consen 541 RRGDKIIVFSDNVFALKEYAIKLGKPF 567 (776)
T ss_pred hcCCeEEEEeccHHHHHHHHHHcCCce
Confidence 467899999887766666776666554
No 174
>KOG0385|consensus
Probab=38.11 E-value=22 Score=35.02 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=16.8
Q ss_pred HHHHH--HhhhhhHhhhhhhhcCC
Q psy3103 46 TIIEQ--LFRSGYLMILVHLLGEE 67 (217)
Q Consensus 46 ~~~l~--~v~l~vViDEiH~l~~~ 67 (217)
..+++ ++++ +||||+|.|.+.
T Consensus 282 k~~lk~~~W~y-lvIDEaHRiKN~ 304 (971)
T KOG0385|consen 282 KSFLKKFNWRY-LVIDEAHRIKNE 304 (971)
T ss_pred HHHHhcCCceE-EEechhhhhcch
Confidence 46666 5667 999999999984
No 175
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=38.06 E-value=49 Score=30.82 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=46.1
Q ss_pred HHHHhhhhhHhhhhhhhcCC-CchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhc
Q psy3103 48 IEQLFRSGYLMILVHLLGEE-SRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLG 113 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~-~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~ 113 (217)
+...++- +|+|-+|.++|- +||+.-..++.+|-....+--...+--++.+.|-.++.--+|..+.
T Consensus 182 la~~iqr-LvVDhLHiVGDIyDRGP~pd~Imd~L~~yhsvDiQWGNHDilWmgA~sGs~vc~aNvIR 247 (648)
T COG3855 182 LAYLIQR-LVVDHLHIVGDIYDRGPYPDKIMDTLINYHSVDIQWGNHDILWMGAASGSKVCMANVIR 247 (648)
T ss_pred HHHHHHH-HhhhheeeecccccCCCCchHHHHHHhhcccccccccCcceEEeecccCChHHHHHHHH
Confidence 3446666 999999999995 6999999999987544322223344568888887777666666554
No 176
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=38.04 E-value=30 Score=31.83 Aligned_cols=22 Identities=0% Similarity=-0.046 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhhhHhhhhhhhcC
Q psy3103 44 DRTIIEQLFRSGYLMILVHLLGE 66 (217)
Q Consensus 44 ~~~~~l~~v~l~vViDEiH~l~~ 66 (217)
.++..++.+.+ ++|||+|.+.+
T Consensus 195 ~f~~~~~~~dv-LiIDDiq~l~~ 216 (445)
T PRK12422 195 RFRQFYRNVDA-LFIEDIEVFSG 216 (445)
T ss_pred HHHHHcccCCE-EEEcchhhhcC
Confidence 34455667889 99999999986
No 177
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=37.77 E-value=42 Score=30.64 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhhhHhhhhhhhcCC
Q psy3103 44 DRTIIEQLFRSGYLMILVHLLGEE 67 (217)
Q Consensus 44 ~~~~~l~~v~l~vViDEiH~l~~~ 67 (217)
+....++++.+ ++|||+|.+.+.
T Consensus 204 ~~~~~~~~~dl-LiiDDi~~l~~~ 226 (450)
T PRK00149 204 EFKEKYRSVDV-LLIDDIQFLAGK 226 (450)
T ss_pred HHHHHHhcCCE-EEEehhhhhcCC
Confidence 34455667889 999999999863
No 178
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=37.65 E-value=20 Score=35.49 Aligned_cols=38 Identities=18% Similarity=0.515 Sum_probs=23.3
Q ss_pred hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEec
Q psy3103 52 FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSA 100 (217)
Q Consensus 52 v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSA 100 (217)
.++ +||||+|+|... -...++.-| ...+.+.+||+.+.
T Consensus 120 ~KV-IIIDEah~LT~~----A~NALLKtL------EEPP~~v~FILaTt 157 (830)
T PRK07003 120 FKV-YMIDEVHMLTNH----AFNAMLKTL------EEPPPHVKFILATT 157 (830)
T ss_pred ceE-EEEeChhhCCHH----HHHHHHHHH------HhcCCCeEEEEEEC
Confidence 478 999999999862 123333222 33356677777653
No 179
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.98 E-value=20 Score=34.88 Aligned_cols=38 Identities=21% Similarity=0.546 Sum_probs=24.1
Q ss_pred hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEec
Q psy3103 52 FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSA 100 (217)
Q Consensus 52 v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSA 100 (217)
.+. +||||+|+|... ....++. .+ ...+.++.||+.+.
T Consensus 125 ~KV-iIIDEah~Ls~~----AaNALLK---TL---EEPP~~v~FILaTt 162 (700)
T PRK12323 125 FKV-YMIDEVHMLTNH----AFNAMLK---TL---EEPPEHVKFILATT 162 (700)
T ss_pred ceE-EEEEChHhcCHH----HHHHHHH---hh---ccCCCCceEEEEeC
Confidence 468 999999999853 1222222 22 44456778887764
No 180
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=36.26 E-value=33 Score=31.52 Aligned_cols=49 Identities=8% Similarity=-0.096 Sum_probs=27.9
Q ss_pred HHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccC
Q psy3103 46 TIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATI 102 (217)
Q Consensus 46 ~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl 102 (217)
...++++.+ +|+||+|.+.+. ....|.+..-+..+. ..+.++|..|-..
T Consensus 201 ~~~~~~~dv-LiIDDiq~l~~k--~~~~e~lf~l~N~~~-----~~~k~iIltsd~~ 249 (450)
T PRK14087 201 KNEICQNDV-LIIDDVQFLSYK--EKTNEIFFTIFNNFI-----ENDKQLFFSSDKS 249 (450)
T ss_pred HHHhccCCE-EEEeccccccCC--HHHHHHHHHHHHHHH-----HcCCcEEEECCCC
Confidence 334567889 999999999852 233344444333332 2334655554433
No 181
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=36.08 E-value=43 Score=30.05 Aligned_cols=23 Identities=9% Similarity=-0.011 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhhhHhhhhhhhcCC
Q psy3103 44 DRTIIEQLFRSGYLMILVHLLGEE 67 (217)
Q Consensus 44 ~~~~~l~~v~l~vViDEiH~l~~~ 67 (217)
.....++++.+ ++|||+|.+.+.
T Consensus 192 ~~~~~~~~~dl-LiiDDi~~l~~~ 214 (405)
T TIGR00362 192 EFKEKYRSVDL-LLIDDIQFLAGK 214 (405)
T ss_pred HHHHHHHhCCE-EEEehhhhhcCC
Confidence 34455677889 999999999863
No 182
>PRK05642 DNA replication initiation factor; Validated
Probab=35.78 E-value=47 Score=27.47 Aligned_cols=21 Identities=0% Similarity=-0.110 Sum_probs=16.4
Q ss_pred HHHHHHhhhhhHhhhhhhhcCC
Q psy3103 46 TIIEQLFRSGYLMILVHLLGEE 67 (217)
Q Consensus 46 ~~~l~~v~l~vViDEiH~l~~~ 67 (217)
...+.++.+ +|+|++|.+.+.
T Consensus 92 ~~~~~~~d~-LiiDDi~~~~~~ 112 (234)
T PRK05642 92 LDNLEQYEL-VCLDDLDVIAGK 112 (234)
T ss_pred HHhhhhCCE-EEEechhhhcCC
Confidence 345667789 999999999763
No 183
>PRK08084 DNA replication initiation factor; Provisional
Probab=35.68 E-value=56 Score=26.99 Aligned_cols=20 Identities=0% Similarity=-0.149 Sum_probs=15.3
Q ss_pred HHHHHhhhhhHhhhhhhhcCC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEE 67 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~ 67 (217)
..+..+.+ ++|||+|.+.+.
T Consensus 93 ~~~~~~dl-liiDdi~~~~~~ 112 (235)
T PRK08084 93 EGMEQLSL-VCIDNIECIAGD 112 (235)
T ss_pred HHhhhCCE-EEEeChhhhcCC
Confidence 34455678 999999999863
No 184
>KOG0387|consensus
Probab=34.56 E-value=23 Score=35.03 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=30.3
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccC--CCHHHHHhhh
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATI--PNIYDIALWL 112 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl--~n~~~~a~wL 112 (217)
++.+ +|+||.|.|.+++- .+...+.. + +..+.+.||.|- .|..++-..+
T Consensus 337 ~W~y-~ILDEGH~IrNpns--~islackk---i-------~T~~RiILSGTPiQNnL~ELwsLf 387 (923)
T KOG0387|consen 337 LWDY-VILDEGHRIRNPNS--KISLACKK---I-------RTVHRIILSGTPIQNNLTELWSLF 387 (923)
T ss_pred cccE-EEecCcccccCCcc--HHHHHHHh---c-------cccceEEeeCccccchHHHHHHHh
Confidence 5677 99999999998642 22223322 2 445566677664 3677765433
No 185
>KOG0921|consensus
Probab=34.28 E-value=17 Score=36.51 Aligned_cols=83 Identities=12% Similarity=0.015 Sum_probs=52.4
Q ss_pred cChHHHHHhhhhheecccCCChhHH---------------HHHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHH
Q psy3103 21 MDNKLKDMLRSSIGYHHAGMSPEDR---------------TIIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQK 85 (217)
Q Consensus 21 ~~~~~~~~~~~~~~~~h~~l~~~~~---------------~~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~ 85 (217)
.++.=+.|=-+|.+++...-++.-+ ..-+..+.+ +++||+|+.-- -|..+..++.-|+..
T Consensus 448 ~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~glrg~sh-~i~deiherdv--~~dfll~~lr~m~~t-- 522 (1282)
T KOG0921|consen 448 NERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENGLRGISH-VIIDEIHERDV--DTDFVLIVLREMIST-- 522 (1282)
T ss_pred HhhHHhhcccccccccccccccccccceeeeccchhhhhhhhccccccc-ccchhhhhhcc--chHHHHHHHHhhhcc--
Confidence 3355555656666666555444322 244668889 99999999863 567777777666544
Q ss_pred hhcCCCCceEEEEeccCCCHHHHHhhhc
Q psy3103 86 SQRASQPIRFVAVSATIPNIYDIALWLG 113 (217)
Q Consensus 86 ~~~~~~~~riv~LSATl~n~~~~a~wL~ 113 (217)
.+..+.+.+|||+. .+-|..+++
T Consensus 523 ----y~dl~v~lmsatId-Td~f~~~f~ 545 (1282)
T KOG0921|consen 523 ----YRDLRVVLMSATID-TDLFTNFFS 545 (1282)
T ss_pred ----chhhhhhhhhcccc-hhhhhhhhc
Confidence 46778888888863 333444444
No 186
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=34.09 E-value=23 Score=25.52 Aligned_cols=47 Identities=9% Similarity=0.076 Sum_probs=26.0
Q ss_pred hhhhHhhhhhhhcCCC---c----hhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 53 RSGYLMILVHLLGEES---R----GPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 53 ~l~vViDEiH~l~~~~---R----G~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
.. +++||+|.+.... . ...+..++..+... .....++.+|+.|.+..
T Consensus 60 ~v-l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~---~~~~~~~~vI~ttn~~~ 113 (132)
T PF00004_consen 60 CV-LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNP---SSKNSRVIVIATTNSPD 113 (132)
T ss_dssp EE-EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTT---TTTSSSEEEEEEESSGG
T ss_pred ee-eeeccchhcccccccccccccccccceeeeccccc---ccccccceeEEeeCChh
Confidence 46 9999999999753 1 22334444433222 11223466667666643
No 187
>KOG0949|consensus
Probab=33.43 E-value=31 Score=35.07 Aligned_cols=24 Identities=42% Similarity=0.657 Sum_probs=21.2
Q ss_pred hHHHHHhhhhheecccCCChhHHH
Q psy3103 23 NKLKDMLRSSIGYHHAGMSPEDRT 46 (217)
Q Consensus 23 ~~~~~~~~~~~~~~h~~l~~~~~~ 46 (217)
-.+.+|+-.|+++||++|+...|.
T Consensus 955 ~~~id~lyRGiG~HHaglNr~yR~ 978 (1330)
T KOG0949|consen 955 FEFIDMLYRGIGVHHAGLNRKYRS 978 (1330)
T ss_pred HHHHHHHHhcccccccccchHHHH
Confidence 678999999999999999987664
No 188
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=33.35 E-value=1.2e+02 Score=30.99 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=26.2
Q ss_pred hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHH
Q psy3103 52 FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYD 107 (217)
Q Consensus 52 v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~ 107 (217)
+.+ ||+||+|.|... +. .+|-.|-.+. ......+-+||.|.++..+..
T Consensus 870 v~I-IILDEID~L~kK--~Q---DVLYnLFR~~--~~s~SKLiLIGISNdlDLper 917 (1164)
T PTZ00112 870 VSI-LIIDEIDYLITK--TQ---KVLFTLFDWP--TKINSKLVLIAISNTMDLPER 917 (1164)
T ss_pred ceE-EEeehHhhhCcc--HH---HHHHHHHHHh--hccCCeEEEEEecCchhcchh
Confidence 347 999999999863 32 2222222221 112344556677766654443
No 189
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=33.06 E-value=66 Score=25.07 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=24.0
Q ss_pred HHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 162 IMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 162 ~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+.++++.++||..+||--+++++++|...
T Consensus 27 ~~~i~~~~rvLvL~PTRvva~em~~aL~~~ 56 (148)
T PF07652_consen 27 REAIKRRLRVLVLAPTRVVAEEMYEALKGL 56 (148)
T ss_dssp HHHHHTT--EEEEESSHHHHHHHHHHTTTS
T ss_pred HHHHHccCeEEEecccHHHHHHHHHHHhcC
Confidence 345678899999999999999999999754
No 190
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=31.22 E-value=86 Score=22.08 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHHHHhccccCCHHHHHHHHHHHhhccCC
Q psy3103 177 TRKGVEHTCTILRQEMSIQTSPEVREIVDKCMSNMMDN 214 (217)
Q Consensus 177 sRk~~e~~A~~l~~~~~~~l~~~e~~~l~~~~~~i~d~ 214 (217)
|+++|+.++..++..---...++++.++-+.++.++|+
T Consensus 32 t~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p 69 (85)
T PF11116_consen 32 TKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSP 69 (85)
T ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCH
Confidence 78888888888876531124566777777777777664
No 191
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=30.46 E-value=28 Score=33.88 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=28.7
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccC
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATI 102 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl 102 (217)
++.+ +|+||++.|.++ .++.++=- +. ..++++|.+|-|-
T Consensus 352 tfDL-LIVDEAqFIk~~----al~~ilp~---l~-----~~n~k~I~ISS~N 390 (738)
T PHA03368 352 DFNL-LFVDEANFIRPD----AVQTIMGF---LN-----QTNCKIIFVSSTN 390 (738)
T ss_pred cccE-EEEechhhCCHH----HHHHHHHH---Hh-----ccCccEEEEecCC
Confidence 7999 999999999983 45555532 21 3588999998773
No 192
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=30.09 E-value=37 Score=30.05 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=22.9
Q ss_pred hhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 54 SGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 54 l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
+ |||||+|.+.+......+..++.-+.. ....++-+|+.+....
T Consensus 141 v-iviDE~d~l~~~~~~~~l~~l~~~~~~-----~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 141 I-VALDDINYLFEKEGNDVLYSLLRAHEE-----YPGARIGVIGISSDLT 184 (394)
T ss_pred E-EEECCHhHhhccCCchHHHHHHHhhhc-----cCCCeEEEEEEECCcc
Confidence 6 899999999832222233333221111 1122455777776654
No 193
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=29.25 E-value=26 Score=32.95 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=13.1
Q ss_pred HhhhhhHhhhhhhhcCC
Q psy3103 51 LFRSGYLMILVHLLGEE 67 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~ 67 (217)
+-+. +||||+||+.-.
T Consensus 119 ryKV-yiIDEvHMLS~~ 134 (515)
T COG2812 119 RYKV-YIIDEVHMLSKQ 134 (515)
T ss_pred cceE-EEEecHHhhhHH
Confidence 4567 899999999853
No 194
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=29.19 E-value=22 Score=34.11 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=43.0
Q ss_pred HHHhhhhhHhhhhhhhcCC-CchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhc
Q psy3103 49 EQLFRSGYLMILVHLLGEE-SRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLG 113 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~-~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~ 113 (217)
-.-++- ++||.+|.+||- +||+.-..++.+|...-.+--...+=-++-|.|-.+|..-+|.-+.
T Consensus 177 ~~lIqr-L~VDhLHIvGDIyDRGp~pd~ImD~Lm~~hsvDIQWGNHDIlWMGAa~Gs~acianviR 241 (640)
T PF06874_consen 177 SELIQR-LAVDHLHIVGDIYDRGPRPDKIMDRLMNYHSVDIQWGNHDILWMGAAAGSEACIANVIR 241 (640)
T ss_pred HHHHHH-HhhhheeecccccCCCCChhHHHHHHhcCCCccccccchHHHHHHHhhCCHHHHHHHHH
Confidence 346677 999999999995 7999999999997543211111222335666666677666666664
No 195
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=29.17 E-value=1.2e+02 Score=25.96 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 155 SYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 155 ~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
+..+..+.+.++.++.+.+|+++-.|++++...+.+..
T Consensus 175 W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g 212 (256)
T COG2519 175 WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERG 212 (256)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcC
Confidence 34567777788889999999999999999999999883
No 196
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=29.08 E-value=78 Score=21.60 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=25.0
Q ss_pred HHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 160 SIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 160 ~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
.+.......+..+|++.++..||..+..+....
T Consensus 39 ~~a~~v~~~G~avv~~~~~e~ae~~~~~l~~~g 71 (82)
T PF02617_consen 39 QIAMEVHREGRAVVGTGSREEAEEYAEKLQRAG 71 (82)
T ss_dssp HHHHHHHHHSEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHcCCEeeeeCCHHHHHHHHHHHHHHh
Confidence 333444445669999999999999999987654
No 197
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=29.06 E-value=2.3e+02 Score=25.09 Aligned_cols=32 Identities=6% Similarity=0.146 Sum_probs=23.8
Q ss_pred HHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 161 IIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 161 ~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
.+..+...+..+.||+||+++..+-...+..+
T Consensus 51 ~i~~~~~~gg~iLfVgTk~~~~~~V~~~A~~~ 82 (326)
T PRK12311 51 AVSDTVAKGGRVLFVGTKRQAQDAVADAAKRS 82 (326)
T ss_pred HHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHh
Confidence 33444456678899999999888887777666
No 198
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=28.70 E-value=58 Score=27.27 Aligned_cols=20 Identities=5% Similarity=-0.192 Sum_probs=14.2
Q ss_pred HHHHHH--hhhhhHhhhhhhhcC
Q psy3103 46 TIIEQL--FRSGYLMILVHLLGE 66 (217)
Q Consensus 46 ~~~l~~--v~l~vViDEiH~l~~ 66 (217)
..+++. -.. ++|||+|.+..
T Consensus 98 ~~~~~~a~~~V-L~IDE~~~L~~ 119 (261)
T TIGR02881 98 REVIKKALGGV-LFIDEAYSLAR 119 (261)
T ss_pred HHHHHhccCCE-EEEechhhhcc
Confidence 344543 356 99999999974
No 199
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=28.34 E-value=34 Score=33.11 Aligned_cols=36 Identities=25% Similarity=0.557 Sum_probs=21.6
Q ss_pred hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEE
Q psy3103 52 FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAV 98 (217)
Q Consensus 52 v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~L 98 (217)
.+. +||||+|+|... ....++. .+ ...+.++.||+.
T Consensus 120 ~KV-~IIDEah~Ls~~----a~NALLK---tL---EEPp~~v~FIL~ 155 (647)
T PRK07994 120 FKV-YLIDEVHMLSRH----SFNALLK---TL---EEPPEHVKFLLA 155 (647)
T ss_pred CEE-EEEechHhCCHH----HHHHHHH---HH---HcCCCCeEEEEe
Confidence 357 999999999852 2233332 22 334556666665
No 200
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=28.23 E-value=25 Score=28.10 Aligned_cols=49 Identities=4% Similarity=-0.086 Sum_probs=24.6
Q ss_pred HhhhhhHhhhhhhhcCCCchh---HHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHH
Q psy3103 51 LFRSGYLMILVHLLGEESRGP---VLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIY 106 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~---~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~ 106 (217)
.-.+ +|+||+|.+... |+. .....+.-|.. .--.+..+++++=.....+
T Consensus 79 ~~~l-iviDEa~~~~~~-r~~~~~~~~~~~~~l~~-----hRh~g~diiliTQ~~~~id 130 (193)
T PF05707_consen 79 KGSL-IVIDEAQNFFPS-RSWKGKKVPEIIEFLAQ-----HRHYGWDIILITQSPSQID 130 (193)
T ss_dssp TT-E-EEETTGGGTSB----T-T----HHHHGGGG-----CCCTT-EEEEEES-GGGB-
T ss_pred CCcE-EEEECChhhcCC-CccccccchHHHHHHHH-----hCcCCcEEEEEeCCHHHHh
Confidence 4568 999999999875 333 23333333322 2244577888876655443
No 201
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=28.13 E-value=62 Score=30.16 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=16.9
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHH
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEA 75 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ 75 (217)
+-++.+.|||+|++.++---..++.
T Consensus 254 kPklVfFfDEAHLLF~da~kall~~ 278 (502)
T PF05872_consen 254 KPKLVFFFDEAHLLFNDAPKALLDK 278 (502)
T ss_pred CceEEEEEechhhhhcCCCHHHHHH
Confidence 4466356999999998655444443
No 202
>PRK10536 hypothetical protein; Provisional
Probab=27.98 E-value=31 Score=29.53 Aligned_cols=32 Identities=3% Similarity=0.122 Sum_probs=23.2
Q ss_pred hhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEE
Q psy3103 53 RSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAV 98 (217)
Q Consensus 53 ~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~L 98 (217)
.+ ||+||++++.- ..+..+++|+ +.+.++|.+
T Consensus 178 ~~-vIvDEaqn~~~----~~~k~~ltR~---------g~~sk~v~~ 209 (262)
T PRK10536 178 AV-VILDEAQNVTA----AQMKMFLTRL---------GENVTVIVN 209 (262)
T ss_pred CE-EEEechhcCCH----HHHHHHHhhc---------CCCCEEEEe
Confidence 67 99999999884 4566666664 567776665
No 203
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=27.29 E-value=66 Score=25.78 Aligned_cols=20 Identities=5% Similarity=-0.253 Sum_probs=15.6
Q ss_pred HHHHHhhhhhHhhhhhhhcCC
Q psy3103 47 IIEQLFRSGYLMILVHLLGEE 67 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~ 67 (217)
..++...+ +||||+|.+...
T Consensus 86 ~~~~~~~l-LvIDdi~~l~~~ 105 (226)
T TIGR03420 86 EGLEQADL-VCLDDVEAIAGQ 105 (226)
T ss_pred hhcccCCE-EEEeChhhhcCC
Confidence 34556678 999999999863
No 204
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.05 E-value=66 Score=31.43 Aligned_cols=37 Identities=22% Similarity=0.526 Sum_probs=22.1
Q ss_pred hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEe
Q psy3103 52 FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVS 99 (217)
Q Consensus 52 v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LS 99 (217)
.++ +||||+|+|... ....++.-| ...+.+..+|+.+
T Consensus 119 ~KV-~IIDEVh~LS~~----A~NALLKtL------EEPP~~v~FILaT 155 (702)
T PRK14960 119 FKV-YLIDEVHMLSTH----SFNALLKTL------EEPPEHVKFLFAT 155 (702)
T ss_pred cEE-EEEechHhcCHH----HHHHHHHHH------hcCCCCcEEEEEE
Confidence 368 999999999853 122333322 2334566777654
No 205
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.84 E-value=35 Score=31.82 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=11.9
Q ss_pred hhhhhHhhhhhhhcC
Q psy3103 52 FRSGYLMILVHLLGE 66 (217)
Q Consensus 52 v~l~vViDEiH~l~~ 66 (217)
.+. +||||+|++..
T Consensus 122 ~KV-~IIDEah~Ls~ 135 (484)
T PRK14956 122 YKV-YIIDEVHMLTD 135 (484)
T ss_pred CEE-EEEechhhcCH
Confidence 357 99999999985
No 206
>PRK04296 thymidine kinase; Provisional
Probab=26.35 E-value=49 Score=26.37 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=12.6
Q ss_pred HhhhhhHhhhhhhhcC
Q psy3103 51 LFRSGYLMILVHLLGE 66 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~ 66 (217)
+..+ |||||+|++..
T Consensus 78 ~~dv-viIDEaq~l~~ 92 (190)
T PRK04296 78 KIDC-VLIDEAQFLDK 92 (190)
T ss_pred CCCE-EEEEccccCCH
Confidence 5688 99999999854
No 207
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=26.35 E-value=37 Score=32.06 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=26.2
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEec
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSA 100 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSA 100 (217)
+..+ .|+||+|..++ +|..+..+..-| ...++.++++.|.
T Consensus 184 ~~~~-~I~DEih~f~~--~~~~~~~~~~g~-------~ar~~~l~~~ITT 223 (546)
T COG4626 184 NSVG-AIIDELHLFGK--QEDMYSEAKGGL-------GARPEGLVVYITT 223 (546)
T ss_pred Ccce-EEEehhhhhcC--HHHHHHHHHhhh-------ccCcCceEEEEec
Confidence 5567 99999999997 433333333222 2247788899987
No 208
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=26.34 E-value=37 Score=30.76 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=27.4
Q ss_pred hhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHH
Q psy3103 53 RSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDI 108 (217)
Q Consensus 53 ~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~ 108 (217)
.+ |||||++.+-- ..+-.+++|. +...+||++ +|+.++
T Consensus 353 ~F-iIIDEaQNLTp----heikTiltR~---------G~GsKIVl~----gd~aQi 390 (436)
T COG1875 353 SF-IIIDEAQNLTP----HELKTILTRA---------GEGSKIVLT----GDPAQI 390 (436)
T ss_pred ce-EEEehhhccCH----HHHHHHHHhc---------cCCCEEEEc----CCHHHc
Confidence 46 99999999985 3555666663 888999986 555543
No 209
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.33 E-value=23 Score=32.67 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=25.2
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEec
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSA 100 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSA 100 (217)
+..+ +|+||+|.+.+. ..++.+-+-+ ...++++++.+|.
T Consensus 123 ~~~~-~i~DE~h~~~~~---~~~~~l~~g~-------~~r~~pl~~~IST 161 (477)
T PF03354_consen 123 NPSL-AIFDELHAHKDD---ELYDALESGM-------GARPNPLIIIIST 161 (477)
T ss_pred CCce-EEEeCCCCCCCH---HHHHHHHhhh-------ccCCCceEEEEeC
Confidence 6788 999999999873 1333333322 1246778888764
No 210
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=26.28 E-value=21 Score=29.27 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=19.3
Q ss_pred hhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEE
Q psy3103 53 RSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAV 98 (217)
Q Consensus 53 ~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~L 98 (217)
.+ ||+||++.+.- ..+..+++|+ +.+.++|++
T Consensus 121 ~~-iIvDEaQN~t~----~~~k~ilTR~---------g~~skii~~ 152 (205)
T PF02562_consen 121 AF-IIVDEAQNLTP----EELKMILTRI---------GEGSKIIIT 152 (205)
T ss_dssp EE-EEE-SGGG--H----HHHHHHHTTB----------TT-EEEEE
T ss_pred eE-EEEecccCCCH----HHHHHHHccc---------CCCcEEEEe
Confidence 77 99999999985 3455566553 677787776
No 211
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=26.27 E-value=96 Score=30.96 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.5
Q ss_pred CCCeEEEeCChhHHHHHHHHHHH
Q psy3103 168 NKPTLIFCATRKGVEHTCTILRQ 190 (217)
Q Consensus 168 ~~~~LVF~~sRk~~e~~A~~l~~ 190 (217)
.+++||||+.++.|..+...|..
T Consensus 295 ~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 295 PGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCcEEEEEcchHHHHHHHHHHHh
Confidence 46799999999999999998865
No 212
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.75 E-value=33 Score=32.02 Aligned_cols=38 Identities=21% Similarity=0.525 Sum_probs=23.5
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEe
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVS 99 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LS 99 (217)
..++ +||||+|++... ....++. ++ ...+++..+|+.+
T Consensus 116 ~~KV-vIIDEah~Ls~~----A~NaLLK---~L---EePp~~v~fIlat 153 (491)
T PRK14964 116 KFKV-YIIDEVHMLSNS----AFNALLK---TL---EEPAPHVKFILAT 153 (491)
T ss_pred CceE-EEEeChHhCCHH----HHHHHHH---HH---hCCCCCeEEEEEe
Confidence 4468 999999999862 2333433 33 3345666666654
No 213
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.64 E-value=59 Score=31.33 Aligned_cols=15 Identities=27% Similarity=0.631 Sum_probs=13.0
Q ss_pred hhhhhHhhhhhhhcCC
Q psy3103 52 FRSGYLMILVHLLGEE 67 (217)
Q Consensus 52 v~l~vViDEiH~l~~~ 67 (217)
.++ +||||+|+|...
T Consensus 125 ~KV-~IIDEvh~Ls~~ 139 (618)
T PRK14951 125 FKV-FMIDEVHMLTNT 139 (618)
T ss_pred ceE-EEEEChhhCCHH
Confidence 678 999999999863
No 214
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=25.51 E-value=44 Score=27.83 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=34.6
Q ss_pred HhhhhhHhhhhhhhcCC----CchhHHHHHHHHHHhHHHhhcCCCCceEEEEecc
Q psy3103 51 LFRSGYLMILVHLLGEE----SRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSAT 101 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~----~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSAT 101 (217)
++.+ ||||=+|.+..+ ++...+..+..+|+.+++ ..++-+|++|-.
T Consensus 130 ~~~~-v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~----~~~i~vi~~sQl 179 (259)
T PF03796_consen 130 KVDV-VFIDYLQLLKSEDSSDNRRQEIGEISRELKALAK----ELNIPVIALSQL 179 (259)
T ss_dssp TEEE-EEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHH----HHTSEEEEEEEB
T ss_pred CCCE-EEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHH----HcCCeEEEcccc
Confidence 5678 999999999874 466778888999998863 345667776653
No 215
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=25.08 E-value=86 Score=20.88 Aligned_cols=34 Identities=6% Similarity=0.156 Sum_probs=26.5
Q ss_pred CCccCChhHHHHHHHHhhhhcChHHHHHhhhhhe
Q psy3103 1 MSIQTSPEVREIVDKCMSNIMDNKLKDMLRSSIG 34 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (217)
|+|..+|++++.|...++++.-.-..+-++-++-
T Consensus 2 ~~isL~~~~~~~i~~~V~sG~Y~s~SEVir~aLR 35 (69)
T TIGR02606 2 TSVSLGEHLESFIRSQVQSGRYGSASEVVRAALR 35 (69)
T ss_pred ceeecCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 7899999999999999988876655555555543
No 216
>PF12846 AAA_10: AAA-like domain
Probab=25.04 E-value=47 Score=27.57 Aligned_cols=14 Identities=7% Similarity=-0.005 Sum_probs=11.9
Q ss_pred hhhhHhhhhhhhcCC
Q psy3103 53 RSGYLMILVHLLGEE 67 (217)
Q Consensus 53 ~l~vViDEiH~l~~~ 67 (217)
.+ +++||+|.+.+.
T Consensus 222 ~~-i~iDEa~~~~~~ 235 (304)
T PF12846_consen 222 KI-IVIDEAHNFLSN 235 (304)
T ss_pred EE-EEeCCccccccc
Confidence 45 899999999985
No 217
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.95 E-value=43 Score=33.77 Aligned_cols=36 Identities=22% Similarity=0.530 Sum_probs=22.2
Q ss_pred hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEE
Q psy3103 52 FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAV 98 (217)
Q Consensus 52 v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~L 98 (217)
.++ +||||+|+|... ....++.- + ...+.+++||+.
T Consensus 120 ~KV-iIIDEAh~LT~e----AqNALLKt---L---EEPP~~vrFILa 155 (944)
T PRK14949 120 FKV-YLIDEVHMLSRS----SFNALLKT---L---EEPPEHVKFLLA 155 (944)
T ss_pred cEE-EEEechHhcCHH----HHHHHHHH---H---hccCCCeEEEEE
Confidence 458 999999999742 22333322 2 334566777775
No 218
>PRK08727 hypothetical protein; Validated
Probab=24.88 E-value=73 Score=26.24 Aligned_cols=19 Identities=0% Similarity=-0.263 Sum_probs=15.5
Q ss_pred HHHHhhhhhHhhhhhhhcCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEE 67 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~ 67 (217)
.+.+..+ +|+||+|.+.+.
T Consensus 90 ~l~~~dl-LiIDDi~~l~~~ 108 (233)
T PRK08727 90 ALEGRSL-VALDGLESIAGQ 108 (233)
T ss_pred HHhcCCE-EEEeCcccccCC
Confidence 4566789 999999999863
No 219
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=24.87 E-value=2.5e+02 Score=23.23 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 159 KSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 159 ~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
..++..+...+..+.|++|+.++..+-+..++.+
T Consensus 52 ~~~i~~~~~~~g~iLfV~tk~~~~~~v~~~a~~~ 85 (225)
T TIGR01011 52 YNFVKDVAANGGKILFVGTKKQAKEIIKEEAERC 85 (225)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 3344444456778899999999988888777665
No 220
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=23.52 E-value=44 Score=26.26 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=22.7
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEe
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVS 99 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LS 99 (217)
..++ |||||+|.+... ..+.++.-| ...++...+|+++
T Consensus 96 ~~kv-iiide~~~l~~~----~~~~Ll~~l------e~~~~~~~~il~~ 133 (188)
T TIGR00678 96 GRRV-VIIEDAERMNEA----AANALLKTL------EEPPPNTLFILIT 133 (188)
T ss_pred CeEE-EEEechhhhCHH----HHHHHHHHh------cCCCCCeEEEEEE
Confidence 4567 999999999863 233444333 2334556666654
No 221
>PHA00350 putative assembly protein
Probab=23.00 E-value=56 Score=29.70 Aligned_cols=17 Identities=6% Similarity=-0.045 Sum_probs=13.5
Q ss_pred HhhhhhHhhhhhhhcCCC
Q psy3103 51 LFRSGYLMILVHLLGEES 68 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~ 68 (217)
.=.+ |||||+|.+-...
T Consensus 81 ~gaL-IViDEaq~~~p~r 97 (399)
T PHA00350 81 RGAL-YVIDEAQMIFPKR 97 (399)
T ss_pred CCCE-EEEECchhhcCCC
Confidence 4458 9999999998653
No 222
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.00 E-value=43 Score=29.71 Aligned_cols=37 Identities=27% Similarity=0.569 Sum_probs=22.4
Q ss_pred hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEe
Q psy3103 52 FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVS 99 (217)
Q Consensus 52 v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LS 99 (217)
.++ +||||+|.+.+. ..+.++.-| ...++..++|+.+
T Consensus 120 ~kv-iIIDEa~~l~~~----a~naLLk~l------Ee~~~~~~fIl~t 156 (363)
T PRK14961 120 FKV-YLIDEVHMLSRH----SFNALLKTL------EEPPQHIKFILAT 156 (363)
T ss_pred ceE-EEEEChhhcCHH----HHHHHHHHH------hcCCCCeEEEEEc
Confidence 458 999999999752 233343332 2334566677654
No 223
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=22.90 E-value=1.7e+02 Score=25.04 Aligned_cols=19 Identities=11% Similarity=-0.183 Sum_probs=13.4
Q ss_pred HHHHHHh--hhhhHhhhhhhhc
Q psy3103 46 TIIEQLF--RSGYLMILVHLLG 65 (217)
Q Consensus 46 ~~~l~~v--~l~vViDEiH~l~ 65 (217)
+..++.. .+ ++|||+|.+.
T Consensus 114 ~~~~~~a~~gv-L~iDEi~~L~ 134 (284)
T TIGR02880 114 KEILKRAMGGV-LFIDEAYYLY 134 (284)
T ss_pred HHHHHHccCcE-EEEechhhhc
Confidence 3445443 56 8999999994
No 224
>KOG1513|consensus
Probab=22.88 E-value=58 Score=32.61 Aligned_cols=40 Identities=18% Similarity=0.055 Sum_probs=27.2
Q ss_pred hhhhHhhhhhhhcC---------CCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 53 RSGYLMILVHLLGE---------ESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 53 ~l~vViDEiH~l~~---------~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
.+ ||+||+|.-.+ .+-|..+-.+=.. -++.|.|-.|||=.
T Consensus 407 Gv-IvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~----------LP~ARVVYASATGA 455 (1300)
T KOG1513|consen 407 GV-IVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKK----------LPNARVVYASATGA 455 (1300)
T ss_pred ee-EEehhhhhhcccccccCCCcCcccHhHHHHHHh----------CCCceEEEeeccCC
Confidence 45 99999998764 2355543333222 48899999999964
No 225
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=22.79 E-value=43 Score=29.19 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=23.5
Q ss_pred hhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 54 SGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 54 l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
+ |||||+|.+.+.... .+..+ .|+.... ...+.++.+|+++....
T Consensus 132 v-lvIDE~d~L~~~~~~-~L~~l-~~~~~~~--~~~~~~v~lI~i~n~~~ 176 (365)
T TIGR02928 132 I-IVLDEIDYLVGDDDD-LLYQL-SRARSNG--DLDNAKVGVIGISNDLK 176 (365)
T ss_pred E-EEECchhhhccCCcH-HHHhH-hcccccc--CCCCCeEEEEEEECCcc
Confidence 6 899999999742222 22222 2221010 11125677888886643
No 226
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=22.68 E-value=42 Score=34.07 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=27.6
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN 104 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n 104 (217)
.++..+-.||+||-|.+..+ |..|+.+ .+ + +| .-++-.|||.++
T Consensus 197 ~i~~~~PivIiDEPh~~~~~--~k~~~~i-~~---l------np-l~~lrysAT~~~ 240 (986)
T PRK15483 197 ALAATRPVVIIDEPHRFPRD--NKFYQAI-EA---L------KP-QMIIRFGATFPD 240 (986)
T ss_pred HHHhCCCEEEEECCCCCCcc--hHHHHHH-Hh---c------Cc-ccEEEEeeecCC
Confidence 45555555899999999763 3344433 32 2 23 234569999986
No 227
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=22.31 E-value=93 Score=30.02 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhhhHhhhhhhhcCC
Q psy3103 44 DRTIIEQLFRSGYLMILVHLLGEE 67 (217)
Q Consensus 44 ~~~~~l~~v~l~vViDEiH~l~~~ 67 (217)
.+...+.++.+ ++||++|.+.+.
T Consensus 370 ~f~~~y~~~DL-LlIDDIq~l~gk 392 (617)
T PRK14086 370 SFRRRYREMDI-LLVDDIQFLEDK 392 (617)
T ss_pred HHHHHhhcCCE-EEEehhccccCC
Confidence 34455677899 999999999864
No 228
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=22.22 E-value=47 Score=32.05 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=27.9
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccC
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATI 102 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl 102 (217)
++..+ +++||+|.+.-+ .+..++-- +. ..+..+|..|-|-
T Consensus 298 Q~fnl-l~VDEA~FI~~~----a~~tilgf---m~-----q~~~KiIfISS~N 337 (668)
T PHA03372 298 QNFHL-LLVDEAHFIKKD----AFNTILGF---LA-----QNTTKIIFISSTN 337 (668)
T ss_pred CCCCE-EEEehhhccCHH----HHHHhhhh---hc-----ccCceEEEEeCCC
Confidence 37889 999999999853 33333332 32 5778899998773
No 229
>PF09145 Ubiq-assoc: Ubiquitin-associated; InterPro: IPR015228 Ubiquitin-associated domains contain approximately 40 residues and bind ubiquitin noncovalently. They adopt a secondary structure consisting of three alpha-helices, and have been identified in various modular proteins involved in protein trafficking, clathrin assembly/disassembly, DNA repair, proteasomal degradation, and cell cycle regulation []. ; PDB: 1PGY_A.
Probab=22.22 E-value=47 Score=20.41 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=22.4
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHh
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRT 82 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~ 82 (217)
++.+--.+|+=||++-.+-+ +|..+|.++..++.
T Consensus 9 EiAkLMSLGLsid~A~~yYe--~Gi~Ye~~~~~~~~ 42 (46)
T PF09145_consen 9 EIAKLMSLGLSIDKANDYYE--RGILYEDLIEKLRK 42 (46)
T ss_dssp HHHHHHHH---SHHHHHHHH--HH-SSHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHH--cCchHHHHHHHHHH
Confidence 34455566788899887775 99999999988754
No 230
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=22.07 E-value=1.3e+02 Score=19.61 Aligned_cols=27 Identities=19% Similarity=0.598 Sum_probs=22.3
Q ss_pred hcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 165 YSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 165 ~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..++.+++++|.+...+...+..+...
T Consensus 47 ~~~~~~vv~~c~~~~~a~~~~~~l~~~ 73 (89)
T cd00158 47 LDKDKPIVVYCRSGNRSARAAKLLRKA 73 (89)
T ss_pred cCCCCeEEEEeCCCchHHHHHHHHHHh
Confidence 356789999999988888888888765
No 231
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.92 E-value=54 Score=32.72 Aligned_cols=38 Identities=11% Similarity=0.357 Sum_probs=23.4
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEe
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVS 99 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LS 99 (217)
..++ +||||+|+|... -...++.- + ...+.++.||+++
T Consensus 120 ~~KV-~IIDEad~lt~~----a~NaLLK~---L---EEpP~~~~fIl~t 157 (824)
T PRK07764 120 RYKI-FIIDEAHMVTPQ----GFNALLKI---V---EEPPEHLKFIFAT 157 (824)
T ss_pred CceE-EEEechhhcCHH----HHHHHHHH---H---hCCCCCeEEEEEe
Confidence 4568 999999999862 12233322 2 3345667777665
No 232
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=21.85 E-value=1.3e+02 Score=20.58 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=18.8
Q ss_pred CCCCeEEEeCC--hhHHHHHHHHHHHh
Q psy3103 167 DNKPTLIFCAT--RKGVEHTCTILRQE 191 (217)
Q Consensus 167 ~~~~~LVF~~s--Rk~~e~~A~~l~~~ 191 (217)
+..+++++|.+ |..+...+..|...
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~ 75 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSEL 75 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHc
Confidence 36789999999 66677777777654
No 233
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=21.47 E-value=3e+02 Score=22.03 Aligned_cols=34 Identities=9% Similarity=0.224 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 159 KSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 159 ~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
..++..+...+..+.|++||.....+-+..++.+
T Consensus 46 ~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~ 79 (193)
T cd01425 46 LNFIANIAAKGGKILFVGTKPQAQRAVKKFAERT 79 (193)
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 3444555556778899999998888777777665
No 234
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.43 E-value=37 Score=32.48 Aligned_cols=40 Identities=13% Similarity=0.326 Sum_probs=25.3
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEe
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVS 99 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LS 99 (217)
....++ +||||+|++... ....++. .+ ...+.++.+|+++
T Consensus 116 ~~~~KV-vIIDEah~Lt~~----A~NALLK---~L---EEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRI-FIVDEAHMVTTA----GFNALLK---IV---EEPPEHLIFIFAT 155 (584)
T ss_pred cCCceE-EEEECCCcCCHH----HHHHHHH---HH---hcCCCCeEEEEEe
Confidence 345678 999999999853 2333433 23 3445677777765
No 235
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=21.38 E-value=7.6e+02 Score=24.01 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=23.3
Q ss_pred CCCCeEEEeCChhHHHHHHHHHHHhcc
Q psy3103 167 DNKPTLIFCATRKGVEHTCTILRQEMS 193 (217)
Q Consensus 167 ~~~~~LVF~~sRk~~e~~A~~l~~~~~ 193 (217)
.++.++|...|++..+.++..+....+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~ 495 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIP 495 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcC
Confidence 467899999999999999999977653
No 236
>PRK04841 transcriptional regulator MalT; Provisional
Probab=21.32 E-value=49 Score=32.60 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=26.8
Q ss_pred hhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC
Q psy3103 54 SGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN 104 (217)
Q Consensus 54 l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n 104 (217)
+ +|+|++|.+.++..-..+..++.+ .+++..+|..|=+.+.
T Consensus 124 ~-lvlDD~h~~~~~~~~~~l~~l~~~---------~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 124 Y-LVIDDYHLITNPEIHEAMRFFLRH---------QPENLTLVVLSRNLPP 164 (903)
T ss_pred E-EEEeCcCcCCChHHHHHHHHHHHh---------CCCCeEEEEEeCCCCC
Confidence 5 999999999765332333333332 3678888888876543
No 237
>PRK07952 DNA replication protein DnaC; Validated
Probab=21.19 E-value=1.3e+02 Score=25.33 Aligned_cols=33 Identities=9% Similarity=-0.130 Sum_probs=22.7
Q ss_pred cCCChhHHHHHHHHhhhhhHhhhhhhhcCCCchh
Q psy3103 38 AGMSPEDRTIIEQLFRSGYLMILVHLLGEESRGP 71 (217)
Q Consensus 38 ~~l~~~~~~~~l~~v~l~vViDEiH~l~~~~RG~ 71 (217)
...+.++.-..+.++.+ +||||++....++++.
T Consensus 149 ~~~~~~~~l~~l~~~dl-LvIDDig~~~~s~~~~ 181 (244)
T PRK07952 149 SETSEEQLLNDLSNVDL-LVIDEIGVQTESRYEK 181 (244)
T ss_pred ccccHHHHHHHhccCCE-EEEeCCCCCCCCHHHH
Confidence 33444444455778999 9999999987654443
No 238
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=21.03 E-value=1.7e+02 Score=22.12 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=18.8
Q ss_pred HHhcCCCCeEEEeCChhHHHHHHHHH
Q psy3103 163 MQYSDNKPTLIFCATRKGVEHTCTIL 188 (217)
Q Consensus 163 ~~~~~~~~~LVF~~sRk~~e~~A~~l 188 (217)
+.+..|.+++|+|.+...++.+-..|
T Consensus 24 k~~~~g~rv~V~~~d~~~a~~lD~~L 49 (137)
T PF04364_consen 24 KAYRQGQRVLVLCPDEEQAEALDELL 49 (137)
T ss_dssp HHHHTT--EEEE-SSHHHHHHHHHHT
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 34577899999999999988887766
No 239
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=20.90 E-value=76 Score=25.68 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=14.2
Q ss_pred HHHHhhhhhHhhhhhhhcC
Q psy3103 48 IEQLFRSGYLMILVHLLGE 66 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~ 66 (217)
+..+..+ +||||+|.+..
T Consensus 87 ~~~~~~~-liiDdi~~l~~ 104 (227)
T PRK08903 87 FDPEAEL-YAVDDVERLDD 104 (227)
T ss_pred hcccCCE-EEEeChhhcCc
Confidence 3445688 99999999865
No 240
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=20.68 E-value=1.7e+02 Score=20.08 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=22.0
Q ss_pred HHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 163 MQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 163 ~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..+.++++++++|.+-..+...+..|.+.
T Consensus 56 ~~~~~~~~ivv~C~~G~rs~~aa~~L~~~ 84 (100)
T cd01523 56 DQLPDDQEVTVICAKEGSSQFVAELLAER 84 (100)
T ss_pred hhCCCCCeEEEEcCCCCcHHHHHHHHHHc
Confidence 34456789999999877777888877654
No 241
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=20.60 E-value=1.1e+02 Score=23.99 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=15.8
Q ss_pred hHhhhhhhhc-CCC-chhHHHHHHHHH
Q psy3103 56 YLMILVHLLG-EES-RGPVLEAVVCRM 80 (217)
Q Consensus 56 vViDEiH~l~-~~~-RG~~lE~ll~RL 80 (217)
|||||+|.+. ... ....+..+..-+
T Consensus 122 iviDe~~~~~~~~~~~~~~~~~l~~~~ 148 (234)
T PF01637_consen 122 IVIDEFQYLAIASEEDKDFLKSLRSLL 148 (234)
T ss_dssp EEEETGGGGGBCTTTTHHHHHHHHHHH
T ss_pred EEEecHHHHhhcccchHHHHHHHHHHH
Confidence 9999999999 433 334444444433
No 242
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=20.57 E-value=57 Score=31.96 Aligned_cols=38 Identities=16% Similarity=0.505 Sum_probs=23.1
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEe
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVS 99 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LS 99 (217)
..++ |||||+|++... ....++.-| ...+..+.+|+.+
T Consensus 119 k~KV-IIIDEad~Ls~~----A~NALLKtL------EEPp~~v~fILaT 156 (709)
T PRK08691 119 KYKV-YIIDEVHMLSKS----AFNAMLKTL------EEPPEHVKFILAT 156 (709)
T ss_pred CcEE-EEEECccccCHH----HHHHHHHHH------HhCCCCcEEEEEe
Confidence 3478 999999998752 223333332 2235667777665
No 243
>PHA01735 hypothetical protein
Probab=20.53 E-value=61 Score=21.89 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=27.0
Q ss_pred HhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCC
Q psy3103 57 LMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFG 115 (217)
Q Consensus 57 ViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~ 115 (217)
.+||+|-+.- +.+++|++. + -||-.+.....+||..+
T Consensus 9 ~fs~LH~~lt-------~El~~Riks-------g--------eATtaDL~AA~d~Lk~N 45 (76)
T PHA01735 9 QFDELHQLLT-------NELLSRIKS-------G--------EATTADLRAACDWLKSN 45 (76)
T ss_pred HHHHHHHHHH-------HHHHHHHhc-------C--------cccHHHHHHHHHHHHHC
Confidence 5788887664 567777642 1 37888999999999866
No 244
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=20.11 E-value=36 Score=29.93 Aligned_cols=16 Identities=6% Similarity=0.034 Sum_probs=14.2
Q ss_pred HHhhhhhHhhhhhhhcC
Q psy3103 50 QLFRSGYLMILVHLLGE 66 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~ 66 (217)
....+ |||||+|.+.+
T Consensus 82 ~~~Dv-iivDEAqrl~~ 97 (352)
T PF09848_consen 82 NKYDV-IIVDEAQRLRT 97 (352)
T ss_pred CcCCE-EEEehhHhhhh
Confidence 46788 99999999997
No 245
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=20.07 E-value=2.2e+02 Score=19.12 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=21.3
Q ss_pred HhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 164 QYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 164 ~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+..+.++++||.+-..+...+..+...
T Consensus 47 ~~~~~~~vvl~c~~g~~a~~~a~~L~~~ 74 (90)
T cd01524 47 ELPKDKEIIVYCAVGLRGYIAARILTQN 74 (90)
T ss_pred hcCCCCcEEEEcCCChhHHHHHHHHHHC
Confidence 3466789999999877788888777543
Done!