Query psy3103
Match_columns 217
No_of_seqs 150 out of 1217
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 16:34:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 99.9 9.8E-24 3.4E-28 214.9 8.1 148 38-192 185-341 (1724)
2 4f92_B U5 small nuclear ribonu 99.9 1.1E-22 3.6E-27 207.4 12.2 149 36-192 1022-1179(1724)
3 2p6r_A Afuhel308 helicase; pro 99.7 1.5E-17 5.1E-22 157.1 8.7 142 36-191 116-265 (702)
4 2va8_A SSO2462, SKI2-type heli 99.7 1.1E-16 3.8E-21 151.2 12.5 156 36-211 123-296 (715)
5 2zj8_A DNA helicase, putative 99.7 7.6E-17 2.6E-21 152.7 10.2 133 37-192 117-261 (720)
6 2xgj_A ATP-dependent RNA helic 99.5 1.4E-14 4.9E-19 141.9 10.6 148 48-207 189-380 (1010)
7 4a4z_A Antiviral helicase SKI2 99.5 2.6E-14 8.8E-19 139.9 8.0 80 48-137 144-223 (997)
8 3l9o_A ATP-dependent RNA helic 99.5 9.6E-14 3.3E-18 137.1 8.7 133 48-190 287-463 (1108)
9 3i5x_A ATP-dependent RNA helic 99.3 3.8E-11 1.3E-15 109.9 13.5 149 35-191 202-362 (563)
10 3sqw_A ATP-dependent RNA helic 99.1 5.8E-10 2E-14 102.9 13.6 136 48-191 172-311 (579)
11 3eiq_A Eukaryotic initiation f 99.0 1.4E-09 4.9E-14 94.9 10.8 120 51-191 183-303 (414)
12 2i4i_A ATP-dependent RNA helic 99.0 1.9E-10 6.3E-15 100.8 4.8 138 36-191 153-299 (417)
13 1oyw_A RECQ helicase, ATP-depe 99.0 6.6E-10 2.3E-14 101.7 7.2 137 50-208 138-282 (523)
14 2db3_A ATP-dependent RNA helic 98.9 3.3E-09 1.1E-13 94.5 9.7 135 35-191 180-323 (434)
15 2j0s_A ATP-dependent RNA helic 98.9 4.1E-09 1.4E-13 92.3 9.8 135 36-191 157-299 (410)
16 2v1x_A ATP-dependent DNA helic 98.9 9.9E-10 3.4E-14 102.1 5.7 135 51-207 165-312 (591)
17 1xti_A Probable ATP-dependent 98.9 2.6E-09 8.8E-14 92.6 7.7 120 49-191 150-273 (391)
18 1hv8_A Putative ATP-dependent 98.9 1.7E-09 5.9E-14 92.6 6.3 114 49-191 145-261 (367)
19 3fht_A ATP-dependent RNA helic 98.9 5E-09 1.7E-13 91.3 9.4 121 50-192 167-290 (412)
20 3pey_A ATP-dependent RNA helic 98.9 1.6E-09 5.5E-14 93.6 6.2 123 49-192 143-267 (395)
21 1s2m_A Putative ATP-dependent 98.8 3.9E-09 1.3E-13 91.9 6.9 118 50-191 162-281 (400)
22 3fho_A ATP-dependent RNA helic 98.8 2.9E-09 9.9E-14 96.9 5.8 122 49-191 257-380 (508)
23 2z0m_A 337AA long hypothetical 98.8 5.5E-09 1.9E-13 88.5 5.9 130 49-206 127-260 (337)
24 1fuu_A Yeast initiation factor 98.8 3.2E-09 1.1E-13 92.0 3.5 120 50-191 161-282 (394)
25 2xau_A PRE-mRNA-splicing facto 98.7 1.7E-08 5.7E-13 96.5 8.0 118 49-190 206-325 (773)
26 3fmp_B ATP-dependent RNA helic 98.6 4.9E-09 1.7E-13 94.1 1.3 121 50-191 234-356 (479)
27 3oiy_A Reverse gyrase helicase 98.6 8.2E-08 2.8E-12 84.4 7.5 121 50-192 138-276 (414)
28 3rc3_A ATP-dependent RNA helic 98.5 5.5E-08 1.9E-12 91.7 5.3 125 49-209 237-367 (677)
29 1wp9_A ATP-dependent RNA helic 98.4 1E-06 3.5E-11 77.3 9.0 56 49-114 123-182 (494)
30 2jlq_A Serine protease subunit 98.3 4.6E-08 1.6E-12 87.8 -0.8 104 49-191 108-211 (451)
31 4ddu_A Reverse gyrase; topoiso 98.3 1.3E-06 4.5E-11 86.4 8.5 122 49-192 194-333 (1104)
32 1yks_A Genome polyprotein [con 98.3 2.9E-07 1E-11 82.3 3.4 103 49-191 97-200 (440)
33 2whx_A Serine protease/ntpase/ 98.3 1.3E-07 4.5E-12 88.2 0.9 105 49-192 275-379 (618)
34 3tbk_A RIG-I helicase domain; 98.2 1.4E-05 4.9E-10 71.8 11.6 52 49-104 125-176 (555)
35 2v6i_A RNA helicase; membrane, 98.2 3.2E-06 1.1E-10 75.3 7.2 104 49-191 91-194 (431)
36 2z83_A Helicase/nucleoside tri 98.2 1.7E-06 5.7E-11 77.8 5.4 104 49-191 110-213 (459)
37 2gxq_A Heat resistant RNA depe 98.1 8.8E-07 3E-11 70.1 2.9 56 50-115 143-199 (207)
38 4a2p_A RIG-I, retinoic acid in 98.1 1.2E-05 4.2E-10 72.5 10.6 59 49-112 128-188 (556)
39 3iuy_A Probable ATP-dependent 98.1 5.1E-07 1.8E-11 72.9 1.2 57 49-115 165-222 (228)
40 1vec_A ATP-dependent RNA helic 98.1 2E-06 6.8E-11 68.1 4.3 51 50-110 145-196 (206)
41 3fe2_A Probable ATP-dependent 98.1 4.9E-07 1.7E-11 74.0 0.7 57 49-115 174-231 (242)
42 2eyq_A TRCF, transcription-rep 98.1 8.7E-06 3E-10 80.9 9.6 113 49-192 723-836 (1151)
43 3ly5_A ATP-dependent RNA helic 98.1 1.2E-06 4.1E-11 72.8 2.8 68 35-112 177-253 (262)
44 3h1t_A Type I site-specific re 98.0 8.2E-06 2.8E-10 75.1 7.3 53 50-114 301-355 (590)
45 2pl3_A Probable ATP-dependent 98.0 1.1E-06 3.6E-11 71.4 1.2 56 50-115 170-226 (236)
46 1q0u_A Bstdead; DEAD protein, 98.0 1.5E-06 5E-11 69.9 1.9 69 37-115 129-205 (219)
47 1gku_B Reverse gyrase, TOP-RG; 98.0 3.7E-07 1.3E-11 90.0 -2.4 123 49-191 173-298 (1054)
48 4gl2_A Interferon-induced heli 98.0 3.5E-05 1.2E-09 72.0 10.8 24 168-191 400-423 (699)
49 3bor_A Human initiation factor 98.0 1.6E-06 5.5E-11 70.7 1.4 56 50-115 172-228 (237)
50 2wv9_A Flavivirin protease NS2 98.0 6.6E-06 2.2E-10 77.5 5.8 104 49-191 330-433 (673)
51 3o8b_A HCV NS3 protease/helica 98.0 4.3E-06 1.5E-10 78.5 4.2 25 167-191 395-419 (666)
52 1qde_A EIF4A, translation init 98.0 3.8E-06 1.3E-10 67.4 3.3 54 50-113 154-208 (224)
53 2ykg_A Probable ATP-dependent 97.9 2.8E-05 9.5E-10 72.6 9.4 51 49-103 134-184 (696)
54 3dkp_A Probable ATP-dependent 97.9 1.8E-06 6.1E-11 70.5 1.0 59 49-113 173-232 (245)
55 2oxc_A Probable ATP-dependent 97.9 3.5E-06 1.2E-10 68.2 2.4 46 49-104 164-210 (230)
56 3llm_A ATP-dependent RNA helic 97.9 4.2E-06 1.5E-10 68.2 2.8 58 49-116 174-231 (235)
57 3ber_A Probable ATP-dependent 97.9 4.4E-06 1.5E-10 68.8 2.8 56 50-115 185-241 (249)
58 4a2q_A RIG-I, retinoic acid in 97.9 0.00012 4E-09 69.9 12.3 50 49-103 369-418 (797)
59 1wrb_A DJVLGB; RNA helicase, D 97.9 1.1E-06 3.9E-11 72.1 -1.5 61 49-115 172-233 (253)
60 3fmo_B ATP-dependent RNA helic 97.8 4E-06 1.4E-10 71.2 1.1 57 49-115 233-291 (300)
61 1t6n_A Probable ATP-dependent 97.7 4.9E-06 1.7E-10 66.6 0.0 57 49-115 156-214 (220)
62 1c4o_A DNA nucleotide excision 97.7 8.2E-05 2.8E-09 69.9 8.1 124 49-191 323-462 (664)
63 2fwr_A DNA repair protein RAD2 97.6 2.2E-05 7.4E-10 70.0 3.3 40 50-104 191-230 (472)
64 4a2w_A RIG-I, retinoic acid in 97.6 0.00034 1.2E-08 68.1 11.8 50 49-103 369-418 (936)
65 2d7d_A Uvrabc system protein B 97.6 0.00022 7.6E-09 66.9 9.2 124 49-191 329-468 (661)
66 1gm5_A RECG; helicase, replica 97.5 4E-05 1.4E-09 73.3 3.6 113 49-190 488-608 (780)
67 2oca_A DAR protein, ATP-depend 97.5 0.00017 5.7E-09 64.9 6.5 45 47-105 221-265 (510)
68 3b6e_A Interferon-induced heli 97.1 0.00014 4.7E-09 57.4 1.9 52 49-101 160-216 (216)
69 1rif_A DAR protein, DNA helica 97.0 9.4E-05 3.2E-09 61.6 -0.1 46 47-106 221-266 (282)
70 1z63_A Helicase of the SNF2/RA 96.7 0.013 4.6E-07 52.2 11.1 45 165-209 338-389 (500)
71 2w00_A HSDR, R.ECOR124I; ATP-b 96.1 0.0075 2.6E-07 59.3 6.4 24 168-191 537-560 (1038)
72 3dmq_A RNA polymerase-associat 95.8 0.0092 3.1E-07 58.3 5.7 26 166-191 501-526 (968)
73 3jux_A Protein translocase sub 95.7 0.026 9.1E-07 53.5 7.8 86 93-192 410-498 (822)
74 2fz4_A DNA repair protein RAD2 95.4 0.004 1.4E-07 50.6 1.1 43 50-107 191-233 (237)
75 2hjv_A ATP-dependent RNA helic 95.3 0.049 1.7E-06 41.2 6.9 33 158-191 26-58 (163)
76 2jgn_A DBX, DDX3, ATP-dependen 94.9 0.038 1.3E-06 43.0 5.3 34 158-191 36-69 (185)
77 3eaq_A Heat resistant RNA depe 94.7 0.098 3.3E-06 41.5 7.5 34 158-192 22-55 (212)
78 1t5i_A C_terminal domain of A 94.6 0.079 2.7E-06 40.5 6.5 33 158-191 22-54 (172)
79 1fuk_A Eukaryotic initiation f 93.7 0.16 5.3E-06 38.3 6.4 33 158-191 21-53 (165)
80 2fsf_A Preprotein translocase 93.6 0.29 1E-05 47.0 9.4 85 94-192 378-465 (853)
81 3mwy_W Chromo domain-containin 93.6 0.12 4.1E-06 49.2 6.9 27 166-192 570-596 (800)
82 2rb4_A ATP-dependent RNA helic 93.4 0.21 7.1E-06 38.0 6.7 25 167-191 33-57 (175)
83 1nkt_A Preprotein translocase 92.9 0.36 1.2E-05 46.6 8.8 85 94-192 397-484 (922)
84 3i32_A Heat resistant RNA depe 92.5 0.21 7.4E-06 42.0 6.1 33 158-191 19-51 (300)
85 1tf5_A Preprotein translocase 92.3 0.38 1.3E-05 46.2 8.1 85 94-192 369-456 (844)
86 2p6n_A ATP-dependent RNA helic 91.4 0.35 1.2E-05 37.6 5.8 24 168-191 54-77 (191)
87 4a15_A XPD helicase, ATP-depen 89.3 2.7 9.1E-05 38.8 10.7 92 94-189 377-469 (620)
88 1z3i_X Similar to RAD54-like; 88.7 0.18 6.2E-06 46.8 2.3 43 167-209 415-463 (644)
89 3crv_A XPD/RAD3 related DNA he 88.6 2.4 8E-05 38.4 9.7 92 93-187 316-412 (551)
90 2yjt_D ATP-dependent RNA helic 85.6 0.16 5.6E-06 38.5 0.0 25 167-191 29-53 (170)
91 2ipc_A Preprotein translocase 83.3 3.7 0.00013 39.9 8.3 84 93-189 379-464 (997)
92 1z5z_A Helicase of the SNF2/RA 69.2 21 0.00072 29.0 8.2 26 166-191 110-135 (271)
93 4a15_A XPD helicase, ATP-depen 54.9 2.3 7.9E-05 39.3 -0.3 32 34-66 181-218 (620)
94 2p6r_A Afuhel308 helicase; pro 50.2 9.9 0.00034 35.2 3.2 33 20-52 286-318 (702)
95 2vl7_A XPD; helicase, unknown 48.8 1.9 6.6E-05 38.9 -1.9 24 167-190 383-406 (540)
96 2zj8_A DNA helicase, putative 47.4 12 0.0004 34.8 3.3 32 21-52 285-316 (720)
97 2vl7_A XPD; helicase, unknown 45.5 52 0.0018 29.4 7.2 33 32-65 148-188 (540)
98 2r2a_A Uncharacterized protein 42.4 5.5 0.00019 31.1 0.1 53 42-101 74-132 (199)
99 3te6_A Regulatory protein SIR3 41.5 11 0.00036 31.8 1.8 45 53-107 134-178 (318)
100 2va8_A SSO2462, SKI2-type heli 40.2 16 0.00056 33.7 3.0 31 22-52 304-334 (715)
101 2jtq_A Phage shock protein E; 33.9 84 0.0029 19.9 5.1 26 166-191 39-64 (85)
102 1z3i_X Similar to RAD54-like; 32.7 1.3E+02 0.0043 27.5 7.7 39 51-102 192-230 (644)
103 1l8q_A Chromosomal replication 31.6 37 0.0013 27.7 3.6 17 49-66 96-112 (324)
104 2p65_A Hypothetical protein PF 29.5 32 0.0011 24.9 2.6 13 53-66 117-129 (187)
105 1d2n_A N-ethylmaleimide-sensit 28.1 18 0.00062 28.8 1.0 14 52-66 125-138 (272)
106 1jbk_A CLPB protein; beta barr 27.9 30 0.001 25.0 2.2 12 54-66 118-129 (195)
107 2lnd_A De novo designed protei 27.3 1.4E+02 0.0048 19.9 7.5 54 158-211 40-102 (112)
108 1njg_A DNA polymerase III subu 26.8 25 0.00087 26.4 1.6 37 53-100 128-164 (250)
109 1sxj_A Activator 1 95 kDa subu 26.8 29 0.001 30.8 2.2 42 52-103 149-190 (516)
110 4ag6_A VIRB4 ATPase, type IV s 26.8 42 0.0014 28.4 3.2 13 53-66 264-276 (392)
111 1gmx_A GLPE protein; transfera 26.0 1.1E+02 0.0038 20.4 4.8 30 163-192 53-82 (108)
112 1w36_D RECD, exodeoxyribonucle 25.3 18 0.00063 33.0 0.6 34 51-98 262-295 (608)
113 3syl_A Protein CBBX; photosynt 25.1 45 0.0016 26.7 3.0 20 46-66 123-144 (309)
114 2z4s_A Chromosomal replication 23.9 67 0.0023 27.8 4.0 41 51-99 194-234 (440)
115 2chg_A Replication factor C sm 23.9 37 0.0013 25.1 2.1 38 52-100 103-140 (226)
116 2orw_A Thymidine kinase; TMTK, 23.2 32 0.0011 26.0 1.6 15 51-66 76-90 (184)
117 3hix_A ALR3790 protein; rhodan 22.2 1.3E+02 0.0044 20.0 4.5 28 164-191 48-75 (106)
118 3gk5_A Uncharacterized rhodane 22.1 88 0.003 21.0 3.6 28 164-191 51-78 (108)
119 2r6a_A DNAB helicase, replicat 21.5 34 0.0012 29.8 1.5 45 51-100 313-362 (454)
120 1tq1_A AT5G66040, senescence-a 20.9 77 0.0026 22.1 3.2 27 165-191 79-105 (129)
121 2xgj_A ATP-dependent RNA helic 20.8 65 0.0022 31.4 3.5 31 23-53 399-429 (1010)
122 1w5s_A Origin recognition comp 20.7 37 0.0012 28.4 1.6 12 54-66 141-152 (412)
123 1w4r_A Thymidine kinase; type 20.6 68 0.0023 24.9 3.0 21 43-64 83-103 (195)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.89 E-value=9.8e-24 Score=214.90 Aligned_cols=148 Identities=30% Similarity=0.447 Sum_probs=117.2
Q ss_pred cCCChhHHH---------HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHH
Q psy3103 38 AGMSPEDRT---------IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDI 108 (217)
Q Consensus 38 ~~l~~~~~~---------~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~ 108 (217)
.++|||+|+ .+++++++ |||||+|+++| +||++||.+++|+++.. ...++++|+||||||+||++++
T Consensus 185 lVtTpEkld~llr~~~~~~~l~~v~~-vIiDEvH~l~d-~RG~~lE~~l~rl~~~~--~~~~~~~riI~LSATl~N~~dv 260 (1724)
T 4f92_B 185 IVCTPEKWDIITRKGGERTYTQLVRL-IILDEIHLLHD-DRGPVLEALVARAIRNI--EMTQEDVRLIGLSATLPNYEDV 260 (1724)
T ss_dssp EEECHHHHHHHTTSSTTHHHHTTEEE-EEETTGGGGGS-TTHHHHHHHHHHHHHHH--HHHTCCCEEEEEECSCTTHHHH
T ss_pred EEECHHHHHHHHcCCccchhhcCcCE-EEEecchhcCC-ccHHHHHHHHHHHHHHH--HhCCCCCcEEEEecccCCHHHH
Confidence 455788774 45778999 99999999998 69999999999987653 3346889999999999999999
Q ss_pred HhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHH
Q psy3103 109 ALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTIL 188 (217)
Q Consensus 109 a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l 188 (217)
|+||+++++..++.|++++||+|+++++++.+.......+ ..+...++..+.....++|+||||+||+.|+.+|..|
T Consensus 261 A~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l 337 (1724)
T 4f92_B 261 ATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRF---QIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAI 337 (1724)
T ss_dssp HHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHH---HHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHH
T ss_pred HHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhh---HHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHH
Confidence 9999987666677899999999999988887765322211 2223334444444456789999999999999999999
Q ss_pred HHhc
Q psy3103 189 RQEM 192 (217)
Q Consensus 189 ~~~~ 192 (217)
.+.+
T Consensus 338 ~~~~ 341 (1724)
T 4f92_B 338 RDMC 341 (1724)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.88 E-value=1.1e-22 Score=207.36 Aligned_cols=149 Identities=29% Similarity=0.450 Sum_probs=122.8
Q ss_pred cccCCChhHHH---------HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHH
Q psy3103 36 HHAGMSPEDRT---------IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIY 106 (217)
Q Consensus 36 ~h~~l~~~~~~---------~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~ 106 (217)
+-.+.||++|. .+++++++ ||+||+|+++| +||..+|.+++||++++ .+.++++|+|+||||++|++
T Consensus 1022 ~IiV~TPEkld~llr~~~~~~~l~~v~l-vViDE~H~l~d-~rg~~le~il~rl~~i~--~~~~~~~riI~lSATl~N~~ 1097 (1724)
T 4f92_B 1022 NIIISTPEKWDILSRRWKQRKNVQNINL-FVVDEVHLIGG-ENGPVLEVICSRMRYIS--SQIERPIRIVALSSSLSNAK 1097 (1724)
T ss_dssp SEEEECHHHHHHHHTTTTTCHHHHSCSE-EEECCGGGGGS-TTHHHHHHHHHHHHHHH--HTTSSCCEEEEEESCBTTHH
T ss_pred CEEEECHHHHHHHHhCcccccccceeeE-EEeechhhcCC-CCCccHHHHHHHHHHHH--hhcCCCceEEEEeCCCCCHH
Confidence 34456888764 45678999 99999999998 69999999999999886 56678999999999999999
Q ss_pred HHHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHH
Q psy3103 107 DIALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCT 186 (217)
Q Consensus 107 ~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~ 186 (217)
++++||++++ ..+++|.+++||+|++.++.+++....... ...+..++...+.....++|+||||+||++|+.+|.
T Consensus 1098 dla~WL~~~~-~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~ 1173 (1724)
T 4f92_B 1098 DVAHWLGCSA-TSTFNFHPNVRPVPLELHIQGFNISHTQTR---LLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAI 1173 (1724)
T ss_dssp HHHHHHTCCS-TTEEECCGGGCSSCEEEEEEEECCCSHHHH---HHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHH
T ss_pred HHHHHhCCCC-CCeEEeCCCCCCCCeEEEEEeccCCCchhh---hhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHH
Confidence 9999999875 345689999999999999998876532111 122345667777778889999999999999999999
Q ss_pred HHHHhc
Q psy3103 187 ILRQEM 192 (217)
Q Consensus 187 ~l~~~~ 192 (217)
.+...+
T Consensus 1174 ~L~~~~ 1179 (1724)
T 4f92_B 1174 DILTTC 1179 (1724)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987665
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.70 E-value=1.5e-17 Score=157.09 Aligned_cols=142 Identities=26% Similarity=0.298 Sum_probs=102.9
Q ss_pred cccCCChhHHHHH-------HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHH
Q psy3103 36 HHAGMSPEDRTII-------EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDI 108 (217)
Q Consensus 36 ~h~~l~~~~~~~~-------l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~ 108 (217)
+-.+.|++.+... ++++++ ||+||+|.+++.+||..++.++.++++. .+++|+|+||||++|++++
T Consensus 116 ~Iiv~Tpe~l~~~l~~~~~~l~~~~~-vIiDE~H~l~~~~r~~~~~~ll~~l~~~------~~~~~ii~lSATl~n~~~~ 188 (702)
T 2p6r_A 116 DIIVTTSEKADSLIRNRASWIKAVSC-LVVDEIHLLDSEKRGATLEILVTKMRRM------NKALRVIGLSATAPNVTEI 188 (702)
T ss_dssp SEEEEEHHHHHHHHHTTCSGGGGCCE-EEETTGGGGGCTTTHHHHHHHHHHHHHH------CTTCEEEEEECCCTTHHHH
T ss_pred CEEEECHHHHHHHHHcChhHHhhcCE-EEEeeeeecCCCCcccHHHHHHHHHHhc------CcCceEEEECCCcCCHHHH
Confidence 3344467666544 568899 9999999999988999999999999866 5789999999999999999
Q ss_pred HhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhH-HHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHH
Q psy3103 109 ALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQ-FEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTI 187 (217)
Q Consensus 109 a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~ 187 (217)
++|++++ .+..++||+|+..++...+......... .... ......+.+.+.+++++||||+||+.|+.+|..
T Consensus 189 ~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~ 261 (702)
T 2p6r_A 189 AEWLDAD------YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRR-VKFEELVEECVAENGGVLVFESTRRGAEKTAVK 261 (702)
T ss_dssp HHHTTCE------EEECCCCSSCEEEEEECSSEEEEEETTEEEEEE-CCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred HHHhCCC------cccCCCCCccceEEEeeCCeeeccCcchhhhhh-hhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHH
Confidence 9999865 5678899999987654211000000000 0000 002233344456789999999999999999999
Q ss_pred HHHh
Q psy3103 188 LRQE 191 (217)
Q Consensus 188 l~~~ 191 (217)
+.+.
T Consensus 262 L~~~ 265 (702)
T 2p6r_A 262 LSAI 265 (702)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 4
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.69 E-value=1.1e-16 Score=151.24 Aligned_cols=156 Identities=24% Similarity=0.282 Sum_probs=111.6
Q ss_pred cccCCChhHHHHH-------HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHH
Q psy3103 36 HHAGMSPEDRTII-------EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDI 108 (217)
Q Consensus 36 ~h~~l~~~~~~~~-------l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~ 108 (217)
+-...|++.+... ++++++ ||+||+|.+++..||..++.++.|++ ++|+|+||||++|++++
T Consensus 123 ~Iiv~Tpe~l~~~~~~~~~~l~~~~~-vIiDE~H~l~~~~~~~~l~~i~~~~~----------~~~ii~lSATl~n~~~~ 191 (715)
T 2va8_A 123 DIIITTYEKLDSLWRHRPEWLNEVNY-FVLDELHYLNDPERGPVVESVTIRAK----------RRNLLALSATISNYKQI 191 (715)
T ss_dssp SEEEECHHHHHHHHHHCCGGGGGEEE-EEECSGGGGGCTTTHHHHHHHHHHHH----------TSEEEEEESCCTTHHHH
T ss_pred CEEEEcHHHHHHHHhCChhHhhccCE-EEEechhhcCCcccchHHHHHHHhcc----------cCcEEEEcCCCCCHHHH
Confidence 3444577766543 668899 99999999998889999999999862 68999999999999999
Q ss_pred HhhhcCCCCCeeeecCCCCccccceeEEEeecCCC----------CCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCCh
Q psy3103 109 ALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKP----------SQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATR 178 (217)
Q Consensus 109 a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sR 178 (217)
++|+++. .+..++||+|+..++...+... ....+. ........+.+.+..++++||||+||
T Consensus 192 ~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~LVF~~s~ 262 (715)
T 2va8_A 192 AKWLGAE------PVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVH---GDDAIIAYTLDSLSKNGQVLVFRNSR 262 (715)
T ss_dssp HHHHTCE------EEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEE---SSSHHHHHHHHHHTTTCCEEEECSSH
T ss_pred HHHhCCC------ccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcc---cchHHHHHHHHHHhcCCCEEEEECCH
Confidence 9999865 5678899999987654221100 000000 00122344445567789999999999
Q ss_pred hHHHHHHHHHHHhccc-cCCHHHHHHHHHHHhhc
Q psy3103 179 KGVEHTCTILRQEMSI-QTSPEVREIVDKCMSNM 211 (217)
Q Consensus 179 k~~e~~A~~l~~~~~~-~l~~~e~~~l~~~~~~i 211 (217)
+.|+.+|..+.+.... .+++.+...+....+++
T Consensus 263 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i 296 (715)
T 2va8_A 263 KMAESTALKIANYMNFVSLDENALSEILKQLDDI 296 (715)
T ss_dssp HHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHh
Confidence 9999999999876532 34555555555555544
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.68 E-value=7.6e-17 Score=152.65 Aligned_cols=133 Identities=24% Similarity=0.292 Sum_probs=99.2
Q ss_pred ccCCChhHHHHH-------HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHH
Q psy3103 37 HAGMSPEDRTII-------EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIA 109 (217)
Q Consensus 37 h~~l~~~~~~~~-------l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a 109 (217)
-...|++.+... ++++++ ||+||+|.+++.+||..++.++.+++ .++|+|+||||++|+++++
T Consensus 117 Iiv~Tpe~l~~~~~~~~~~l~~~~~-vIiDE~H~l~~~~r~~~~~~ll~~l~---------~~~~ii~lSATl~n~~~~~ 186 (720)
T 2zj8_A 117 IIIATAEKFDSLLRHGSSWIKDVKI-LVADEIHLIGSRDRGATLEVILAHML---------GKAQIIGLSATIGNPEELA 186 (720)
T ss_dssp EEEECHHHHHHHHHHTCTTGGGEEE-EEEETGGGGGCTTTHHHHHHHHHHHB---------TTBEEEEEECCCSCHHHHH
T ss_pred EEEECHHHHHHHHHcChhhhhcCCE-EEEECCcccCCCcccHHHHHHHHHhh---------cCCeEEEEcCCcCCHHHHH
Confidence 334467666433 568899 99999999999889999999999862 3799999999999999999
Q ss_pred hhhcCCCCCeeeecCCCCccccceeEEEe-----ecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHH
Q psy3103 110 LWLGFGKPTVYAQIDDSFRPVKLTKIVRG-----FPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHT 184 (217)
Q Consensus 110 ~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~ 184 (217)
+|+++. .+..++||+|+...+.. +.... ... .......+.+.+.+++++||||+||+.|+.+
T Consensus 187 ~~l~~~------~~~~~~rp~~l~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~ 253 (720)
T 2zj8_A 187 EWLNAE------LIVSDWRPVKLRRGVFYQGFVTWEDGS--IDR-----FSSWEELVYDAIRKKKGALIFVNMRRKAERV 253 (720)
T ss_dssp HHTTEE------EEECCCCSSEEEEEEEETTEEEETTSC--EEE-----CSSTTHHHHHHHHTTCCEEEECSCHHHHHHH
T ss_pred HHhCCc------ccCCCCCCCcceEEEEeCCeeeccccc--hhh-----hhHHHHHHHHHHhCCCCEEEEecCHHHHHHH
Confidence 999865 46788999998876542 11110 000 0111233334456789999999999999999
Q ss_pred HHHHHHhc
Q psy3103 185 CTILRQEM 192 (217)
Q Consensus 185 A~~l~~~~ 192 (217)
|..+.+..
T Consensus 254 a~~L~~~~ 261 (720)
T 2zj8_A 254 ALELSKKV 261 (720)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 6
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.4e-14 Score=141.87 Aligned_cols=148 Identities=20% Similarity=0.304 Sum_probs=99.1
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
.++++++ |||||+|++.+.+||..++.++..+ ++++|+|+||||++|+.++++|++......+..+..++
T Consensus 189 ~l~~l~l-VViDEaH~l~d~~rg~~~e~il~~l---------~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~ 258 (1010)
T 2xgj_A 189 VMREVAW-VIFDEVHYMRDKERGVVWEETIILL---------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF 258 (1010)
T ss_dssp TGGGEEE-EEEETGGGGGCTTTHHHHHHHHHHS---------CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC
T ss_pred hhhcCCE-EEEechhhhcccchhHHHHHHHHhc---------CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC
Confidence 3568999 9999999999999999999988753 57899999999999999999999742222344667789
Q ss_pred ccccceeEEEeec---------CCCCCchhHHHHHh---------------------------------hHHHHHHHHHh
Q psy3103 128 RPVKLTKIVRGFP---------TKPSQSTFQFEMML---------------------------------SYKLKSIIMQY 165 (217)
Q Consensus 128 Rp~~l~~~~~~~~---------~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~ 165 (217)
||+|+..+++..+ .........+...+ ...+..++..+
T Consensus 259 rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l 338 (1010)
T 2xgj_A 259 RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMI 338 (1010)
T ss_dssp CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHH
T ss_pred CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHH
Confidence 9999988765321 11000000000000 11122333333
Q ss_pred --cCCCCeEEEeCChhHHHHHHHHHHHhccccCCHHHHHHHHHH
Q psy3103 166 --SDNKPTLIFCATRKGVEHTCTILRQEMSIQTSPEVREIVDKC 207 (217)
Q Consensus 166 --~~~~~~LVF~~sRk~~e~~A~~l~~~~~~~l~~~e~~~l~~~ 207 (217)
.+..++||||+||+.|+.++..+... . +....++..+...
T Consensus 339 ~~~~~~~~IVF~~sr~~~e~la~~L~~~-~-~~~~~e~~~i~~~ 380 (1010)
T 2xgj_A 339 WKKKYNPVIVFSFSKRDCEELALKMSKL-D-FNSDDEKEALTKI 380 (1010)
T ss_dssp HHHTCCSEEEEESSHHHHHHHHHTTTTS-C-CCCHHHHHHHHHH
T ss_pred HhcCCCCEEEEECCHHHHHHHHHHHHhC-C-CCChHHHHHHHHH
Confidence 23569999999999999999998653 2 2344444444433
No 7
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.49 E-value=2.6e-14 Score=139.90 Aligned_cols=80 Identities=30% Similarity=0.477 Sum_probs=69.1
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
.++++.+ |||||+|.+.+.+||..|+.++..+ ++++++|+||||++|..++++|++......++++....
T Consensus 144 ~l~~l~l-vViDEaH~l~d~~~g~~~e~ii~~l---------~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~ 213 (997)
T 4a4z_A 144 LIRDVEF-VIFDEVHYVNDQDRGVVWEEVIIML---------PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPK 213 (997)
T ss_dssp GGGGEEE-EEECCTTCCCTTCTTCCHHHHHHHS---------CTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSS
T ss_pred hhcCCCE-EEEECcccccccchHHHHHHHHHhc---------ccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCC
Confidence 3568999 9999999999999999999988763 67899999999999999999999864444566888999
Q ss_pred ccccceeEEE
Q psy3103 128 RPVKLTKIVR 137 (217)
Q Consensus 128 Rp~~l~~~~~ 137 (217)
||+|+.+++.
T Consensus 214 r~~pl~~~v~ 223 (997)
T 4a4z_A 214 RPVPLEINIW 223 (997)
T ss_dssp CSSCEEEEEE
T ss_pred CCccceEEEe
Confidence 9999987765
No 8
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.45 E-value=9.6e-14 Score=137.13 Aligned_cols=133 Identities=21% Similarity=0.343 Sum_probs=94.6
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
.++++++ |||||+|.+.+.+||..++.++..+ ++++|+|+||||++|..++++|++......+.++..++
T Consensus 287 ~l~~l~l-VVIDEaH~l~d~~rg~~~e~ii~~l---------~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~ 356 (1108)
T 3l9o_A 287 VMREVAW-VIFDEVHYMRDKERGVVWEETIILL---------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF 356 (1108)
T ss_dssp HHHHEEE-EEEETGGGTTSHHHHHHHHHHHHHS---------CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC
T ss_pred ccccCCE-EEEhhhhhccccchHHHHHHHHHhc---------CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC
Confidence 4779999 9999999999988999999988753 68899999999999999999999754333455777889
Q ss_pred ccccceeEEEeecCCC------CCchh---HHHHH---------------------------------hhHHHHHHHHHh
Q psy3103 128 RPVKLTKIVRGFPTKP------SQSTF---QFEMM---------------------------------LSYKLKSIIMQY 165 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~------~~~~~---~~~~~---------------------------------~~~~~~~~~~~~ 165 (217)
||+|+..+++...... ....+ .+... ....+..++..+
T Consensus 357 rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l 436 (1108)
T 3l9o_A 357 RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMI 436 (1108)
T ss_dssp CSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHH
T ss_pred CcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHH
Confidence 9999987765321110 00000 00000 012233333332
Q ss_pred --cCCCCeEEEeCChhHHHHHHHHHHH
Q psy3103 166 --SDNKPTLIFCATRKGVEHTCTILRQ 190 (217)
Q Consensus 166 --~~~~~~LVF~~sRk~~e~~A~~l~~ 190 (217)
..+.++||||+||+.|+.++..|..
T Consensus 437 ~~~~~~~vIVF~~sr~~~e~la~~L~~ 463 (1108)
T 3l9o_A 437 WKKKYNPVIVFSFSKRDCEELALKMSK 463 (1108)
T ss_dssp HHTTCCCEEEEESCHHHHHHHHHHTCS
T ss_pred HhcCCCCEEEEeCcHHHHHHHHHHHHh
Confidence 3456999999999999999998854
No 9
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.27 E-value=3.8e-11 Score=109.94 Aligned_cols=149 Identities=17% Similarity=0.124 Sum_probs=91.8
Q ss_pred ecccCCChhHHH--------HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-
Q psy3103 35 YHHAGMSPEDRT--------IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI- 105 (217)
Q Consensus 35 ~~h~~l~~~~~~--------~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~- 105 (217)
++-.+.|++... ..++++++ ||+||+|.+.+.+++..++.++..+.... ....+.+|++++|||+++.
T Consensus 202 ~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~-lViDEah~l~~~~f~~~~~~i~~~l~~~~--~~~~~~~~~l~~SAT~~~~v 278 (563)
T 3i5x_A 202 PNIVIATPGRLIDVLEKYSNKFFRFVDY-KVLDEADRLLEIGFRDDLETISGILNEKN--SKSADNIKTLLFSATLDDKV 278 (563)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHCTTCCE-EEEETHHHHTSTTTHHHHHHHHHHHHHHC--SSCTTCCEEEEEESSCCTHH
T ss_pred CCEEEECcHHHHHHHHhccccccccceE-EEEeCHHHHhccchHHHHHHHHHhhhhcc--ccCccCceEEEEEccCCHHH
Confidence 344455666442 34567899 99999999999889999999999876552 2334588999999999984
Q ss_pred HHHHhhhcCCCCCeeeecCCCCcccc---ceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHH
Q psy3103 106 YDIALWLGFGKPTVYAQIDDSFRPVK---LTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVE 182 (217)
Q Consensus 106 ~~~a~wL~~~~~~~~~~~~~~~Rp~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e 182 (217)
.+++.|+..++...........++.. +...+...+.. .... ......+...+.....+.++||||+|++.|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~ 353 (563)
T 3i5x_A 279 QKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF--ANSI---FAAVEHIKKQIKERDSNYKAIIFAPTVKFTS 353 (563)
T ss_dssp HHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST--THHH---HHHHHHHHHHHHHTTTCCEEEEECSCHHHHH
T ss_pred HHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh--HhhH---HHHHHHHHHHHhhcCCCCcEEEEcCcHHHHH
Confidence 77777776553222211111112211 11111111111 0100 0111222223333355789999999999999
Q ss_pred HHHHHHHHh
Q psy3103 183 HTCTILRQE 191 (217)
Q Consensus 183 ~~A~~l~~~ 191 (217)
.++..|.+.
T Consensus 354 ~l~~~L~~~ 362 (563)
T 3i5x_A 354 FLCSILKNE 362 (563)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999876
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=5.8e-10 Score=102.90 Aligned_cols=136 Identities=18% Similarity=0.158 Sum_probs=83.7
Q ss_pred HHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-HHHHhhhcCCCCCeeeecCCC
Q psy3103 48 IEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI-YDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 48 ~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~-~~~a~wL~~~~~~~~~~~~~~ 126 (217)
.++++++ ||+||+|.+.+.+++..++.++..+.... ....+.+|++++|||+++. .+++.++...+..........
T Consensus 172 ~~~~~~~-lViDEah~l~~~gf~~~~~~i~~~l~~~~--~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~ 248 (579)
T 3sqw_A 172 FFRFVDY-KVLDEADRLLEIGFRDDLETISGILNEKN--SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDK 248 (579)
T ss_dssp HCTTCCE-EEEETHHHHTSTTTHHHHHHHHHHHHHHC--SSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCS
T ss_pred ccccCCE-EEEEChHHhhcCCCHHHHHHHHHHhhhhh--cccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCc
Confidence 4567889 99999999999889999999998876542 2234578999999999974 667777655432211111111
Q ss_pred Cccc---cceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 FRPV---KLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 ~Rp~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.++. .+...+...+.. .... ......+...+.....+.++||||+|++.|+.++..|.+.
T Consensus 249 ~~~~~~~~i~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~ 311 (579)
T 3sqw_A 249 NEPEAHERIDQSVVISEKF--ANSI---FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNE 311 (579)
T ss_dssp SSCSSCTTEEEEEEEESST--THHH---HHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccccccccceEEEEecch--hhhH---HHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHh
Confidence 1111 111222211111 0100 0111122222333345789999999999999999999876
No 11
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.02 E-value=1.4e-09 Score=94.94 Aligned_cols=120 Identities=9% Similarity=0.098 Sum_probs=72.3
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCcc
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRP 129 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp 129 (217)
++++ ||+||+|.+.+.+++..+..++.++ .++.|++++|||+++ ..++..++..++ ..+........+
T Consensus 183 ~~~~-vViDEah~~~~~~~~~~~~~~~~~~---------~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 251 (414)
T 3eiq_A 183 YIKM-FVLDEADEMLSRGFKDQIYDIFQKL---------NSNTQVVLLSATMPSDVLEVTKKFMRDP-IRILVKKEELTL 251 (414)
T ss_dssp TCCE-EEECSHHHHHHTTTHHHHHHHHTTS---------CTTCEEEEECSCCCHHHHHHHTTTCSSC-EEECCCCCCCCT
T ss_pred cCcE-EEEECHHHhhccCcHHHHHHHHHhC---------CCCCeEEEEEEecCHHHHHHHHHHcCCC-EEEEecCCccCC
Confidence 4789 9999999998877777776665442 578999999999974 444544443332 111111111222
Q ss_pred ccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 130 VKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 130 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..+...+...+... .. ...+..++... .++++||||++++.|+.++..+.+.
T Consensus 252 ~~~~~~~~~~~~~~--~~-------~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~ 303 (414)
T 3eiq_A 252 EGIRQFYINVEREE--WK-------LDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHAR 303 (414)
T ss_dssp TSCCEEEEECSSST--TH-------HHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTT
T ss_pred CCceEEEEEeChHH--hH-------HHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhc
Confidence 22333332222111 00 12223333332 4679999999999999999999865
No 12
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.01 E-value=1.9e-10 Score=100.83 Aligned_cols=138 Identities=15% Similarity=0.125 Sum_probs=80.2
Q ss_pred cccCCChhHHHHH-------HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHH
Q psy3103 36 HHAGMSPEDRTII-------EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYD 107 (217)
Q Consensus 36 ~h~~l~~~~~~~~-------l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~ 107 (217)
+-.+.|++..... +.++++ ||+||+|.+.+.+++..++.++.+.. + ......+++++|||+++ ...
T Consensus 153 ~I~v~Tp~~l~~~l~~~~~~~~~~~~-iViDEah~~~~~~~~~~~~~i~~~~~-~----~~~~~~~~i~~SAT~~~~~~~ 226 (417)
T 2i4i_A 153 HLLVATPGRLVDMMERGKIGLDFCKY-LVLDEADRMLDMGFEPQIRRIVEQDT-M----PPKGVRHTMMFSATFPKEIQM 226 (417)
T ss_dssp SEEEECHHHHHHHHHTTSBCCTTCCE-EEESSHHHHHHTTCHHHHHHHHTSSS-C----CCBTTBEEEEEESCCCHHHHH
T ss_pred CEEEEChHHHHHHHHcCCcChhhCcE-EEEEChhHhhccCcHHHHHHHHHhcc-C----CCcCCcEEEEEEEeCCHHHHH
Confidence 3344466544333 346889 99999999998778887776665321 0 11236899999999985 344
Q ss_pred HHhhhcCCCCCeeeecCC-CCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHH
Q psy3103 108 IALWLGFGKPTVYAQIDD-SFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCT 186 (217)
Q Consensus 108 ~a~wL~~~~~~~~~~~~~-~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~ 186 (217)
+...+..++ ....... ...+..+...+...+.. .. ...+..++.....+.++||||+|++.|+.++.
T Consensus 227 ~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~---~~-------~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~ 294 (417)
T 2i4i_A 227 LARDFLDEY--IFLAVGRVGSTSENITQKVVWVEES---DK-------RSFLLDLLNATGKDSLTLVFVETKKGADSLED 294 (417)
T ss_dssp HHHHHCSSC--EEEEEC----CCSSEEEEEEECCGG---GH-------HHHHHHHHHTCCTTCEEEEECSSHHHHHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCCCCccCceEEEEEeccH---hH-------HHHHHHHHHhcCCCCeEEEEECCHHHHHHHHH
Confidence 444433222 1111111 11222233333222211 00 12334445555567889999999999999999
Q ss_pred HHHHh
Q psy3103 187 ILRQE 191 (217)
Q Consensus 187 ~l~~~ 191 (217)
.|.+.
T Consensus 295 ~L~~~ 299 (417)
T 2i4i_A 295 FLYHE 299 (417)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 99865
No 13
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.97 E-value=6.6e-10 Score=101.70 Aligned_cols=137 Identities=20% Similarity=0.255 Sum_probs=80.6
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH--HHHHhhhcCCCCCeeeecCCCC
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI--YDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~--~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
.++.+ |||||+|.+.+ +|..+.....+|..+. ...++.++++||||.++. .++.+|++...+.. ...+..
T Consensus 138 ~~~~~-vViDEaH~i~~--~g~~fr~~~~~l~~l~---~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~--~~~~~~ 209 (523)
T 1oyw_A 138 WNPVL-LAVDEAHCISQ--WGHDFRPEYAALGQLR---QRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI--QISSFD 209 (523)
T ss_dssp SCEEE-EEESSGGGGCT--TSSCCCHHHHGGGGHH---HHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEE--EECCCC
T ss_pred CCCCE-EEEeCccccCc--CCCccHHHHHHHHHHH---HhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeE--EeCCCC
Confidence 46789 99999999985 4433222222222221 114678999999999975 67999998654322 233333
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc----cc--cCCHHHH
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM----SI--QTSPEVR 201 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~----~~--~l~~~e~ 201 (217)
|| .+...+.. .. .. ...+...+... .+.++||||+||+.|+.++..|.+.. .+ .++++++
T Consensus 210 r~-~l~~~v~~--~~---~~-------~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R 275 (523)
T 1oyw_A 210 RP-NIRYMLME--KF---KP-------LDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR 275 (523)
T ss_dssp CT-TEEEEEEE--CS---SH-------HHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred CC-ceEEEEEe--CC---CH-------HHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHH
Confidence 44 33222221 11 11 11122222222 57799999999999999999998753 11 1456666
Q ss_pred HHHHHHH
Q psy3103 202 EIVDKCM 208 (217)
Q Consensus 202 ~~l~~~~ 208 (217)
+++.+..
T Consensus 276 ~~~~~~f 282 (523)
T 1oyw_A 276 ADVQEKF 282 (523)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 14
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.92 E-value=3.3e-09 Score=94.55 Aligned_cols=135 Identities=14% Similarity=0.115 Sum_probs=79.0
Q ss_pred ecccCCChhHHHHH-------HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HH
Q psy3103 35 YHHAGMSPEDRTII-------EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IY 106 (217)
Q Consensus 35 ~~h~~l~~~~~~~~-------l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~ 106 (217)
++-.+.|+.....+ ++++++ +|+||+|.+.+.+++..+..++..+. ..+..|++++|||+++ ..
T Consensus 180 ~~Ivv~Tp~~l~~~l~~~~~~l~~~~~-lVlDEah~~~~~gf~~~~~~i~~~~~-------~~~~~q~l~~SAT~~~~~~ 251 (434)
T 2db3_A 180 CHVVIATPGRLLDFVDRTFITFEDTRF-VVLDEADRMLDMGFSEDMRRIMTHVT-------MRPEHQTLMFSATFPEEIQ 251 (434)
T ss_dssp CSEEEECHHHHHHHHHTTSCCCTTCCE-EEEETHHHHTSTTTHHHHHHHHHCTT-------SCSSCEEEEEESCCCHHHH
T ss_pred CCEEEEChHHHHHHHHhCCcccccCCe-EEEccHhhhhccCcHHHHHHHHHhcC-------CCCCceEEEEeccCCHHHH
Confidence 34444466544333 457889 99999999999888888887776531 2577899999999985 34
Q ss_pred HHHhhhcCCCCCeeeecCCC-CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHH
Q psy3103 107 DIALWLGFGKPTVYAQIDDS-FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTC 185 (217)
Q Consensus 107 ~~a~wL~~~~~~~~~~~~~~-~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A 185 (217)
.++..+-.++ ....+... .....+.+.+...+.. .. ...+..++.. .+.++||||+|++.|+.++
T Consensus 252 ~~~~~~l~~~--~~i~~~~~~~~~~~i~~~~~~~~~~---~k-------~~~l~~~l~~--~~~~~lVF~~t~~~a~~l~ 317 (434)
T 2db3_A 252 RMAGEFLKNY--VFVAIGIVGGACSDVKQTIYEVNKY---AK-------RSKLIEILSE--QADGTIVFVETKRGADFLA 317 (434)
T ss_dssp HHHHTTCSSC--EEEEESSTTCCCTTEEEEEEECCGG---GH-------HHHHHHHHHH--CCTTEEEECSSHHHHHHHH
T ss_pred HHHHHhccCC--EEEEeccccccccccceEEEEeCcH---HH-------HHHHHHHHHh--CCCCEEEEEeCcHHHHHHH
Confidence 4444332222 11111111 1122233333222211 00 1122233322 2345999999999999999
Q ss_pred HHHHHh
Q psy3103 186 TILRQE 191 (217)
Q Consensus 186 ~~l~~~ 191 (217)
..|.+.
T Consensus 318 ~~L~~~ 323 (434)
T 2db3_A 318 SFLSEK 323 (434)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 999865
No 15
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.92 E-value=4.1e-09 Score=92.26 Aligned_cols=135 Identities=12% Similarity=0.115 Sum_probs=75.6
Q ss_pred cccCCChhHHHHHHH-------HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-HH
Q psy3103 36 HHAGMSPEDRTIIEQ-------LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI-YD 107 (217)
Q Consensus 36 ~h~~l~~~~~~~~l~-------~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~-~~ 107 (217)
+-.+.|++.....+. ++++ ||+||+|.+.+..++..+..++.. .++..|++++|||+++. .+
T Consensus 157 ~ivv~Tp~~l~~~l~~~~~~~~~~~~-vViDEah~~~~~~~~~~~~~i~~~---------~~~~~~~i~~SAT~~~~~~~ 226 (410)
T 2j0s_A 157 HVVAGTPGRVFDMIRRRSLRTRAIKM-LVLDEADEMLNKGFKEQIYDVYRY---------LPPATQVVLISATLPHEILE 226 (410)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCE-EEEETHHHHTSTTTHHHHHHHHTT---------SCTTCEEEEEESCCCHHHHT
T ss_pred CEEEcCHHHHHHHHHhCCccHhheeE-EEEccHHHHHhhhhHHHHHHHHHh---------CccCceEEEEEcCCCHHHHH
Confidence 334446654444433 4789 999999999987666555544322 26789999999999853 23
Q ss_pred HHhhhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHH
Q psy3103 108 IALWLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTI 187 (217)
Q Consensus 108 ~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~ 187 (217)
+...+..++ ..+........+..+...+...+.. ... ...+..++... ...++||||+|++.|+.++..
T Consensus 227 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~k-----~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~ 295 (410)
T 2j0s_A 227 MTNKFMTDP-IRILVKRDELTLEGIKQFFVAVERE----EWK-----FDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEK 295 (410)
T ss_dssp TGGGTCSSC-EEECCCGGGCSCTTEEEEEEEESST----THH-----HHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHH
T ss_pred HHHHHcCCC-EEEEecCccccCCCceEEEEEeCcH----HhH-----HHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHH
Confidence 332222221 1111111111222333333322211 110 12233333333 356899999999999999999
Q ss_pred HHHh
Q psy3103 188 LRQE 191 (217)
Q Consensus 188 l~~~ 191 (217)
|.+.
T Consensus 296 L~~~ 299 (410)
T 2j0s_A 296 MREA 299 (410)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9865
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.91 E-value=9.9e-10 Score=102.06 Aligned_cols=135 Identities=20% Similarity=0.204 Sum_probs=79.4
Q ss_pred HhhhhhHhhhhhhhcCCC--chhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH--HHHHhhhcCCCCCeeeecCCC
Q psy3103 51 LFRSGYLMILVHLLGEES--RGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI--YDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~--RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~--~~~a~wL~~~~~~~~~~~~~~ 126 (217)
++.+ |||||+|.+.+.+ +.+.+.. +..++.. .++.++++||||.++. .++.+||+..... .+...
T Consensus 165 ~i~~-iViDEAH~is~~g~dfr~~~~~-l~~l~~~------~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~---~~~~~ 233 (591)
T 2v1x_A 165 RFTR-IAVDEVHCCSQWGHDFRPDYKA-LGILKRQ------FPNASLIGLTATATNHVLTDAQKILCIEKCF---TFTAS 233 (591)
T ss_dssp CEEE-EEEETGGGGSTTCTTCCGGGGG-GGHHHHH------CTTSEEEEEESSCCHHHHHHHHHHTTCCSCE---EEECC
T ss_pred CCcE-EEEECcccccccccccHHHHHH-HHHHHHh------CCCCcEEEEecCCCHHHHHHHHHHhCCCCcE---EEecC
Confidence 6789 9999999998632 3333332 1122222 4679999999999864 6788999765321 23333
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHh---cCCCCeEEEeCChhHHHHHHHHHHHhc----cc--cCC
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQY---SDNKPTLIFCATRKGVEHTCTILRQEM----SI--QTS 197 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~sRk~~e~~A~~l~~~~----~~--~l~ 197 (217)
.....+...+...+. .. ...+..+++.+ ..+.++||||+||+.|+.++..|.+.. .+ .++
T Consensus 234 ~~r~nl~~~v~~~~~----~~-------~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~ 302 (591)
T 2v1x_A 234 FNRPNLYYEVRQKPS----NT-------EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLE 302 (591)
T ss_dssp CCCTTEEEEEEECCS----SH-------HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CCCcccEEEEEeCCC----cH-------HHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCC
Confidence 333344333222111 00 11122233333 257899999999999999999998653 11 145
Q ss_pred HHHHHHHHHH
Q psy3103 198 PEVREIVDKC 207 (217)
Q Consensus 198 ~~e~~~l~~~ 207 (217)
++++++..+.
T Consensus 303 ~~~R~~~~~~ 312 (591)
T 2v1x_A 303 PEDKTTVHRK 312 (591)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666444433
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.90 E-value=2.6e-09 Score=92.62 Aligned_cols=120 Identities=11% Similarity=0.117 Sum_probs=68.3
Q ss_pred HHHhhhhhHhhhhhhhcCC-CchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEE-SRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~-~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
+.++++ ||+||+|.+.+. .+...+..++ ...+...|++++|||+++ ...+...+..++ ..+ .+...
T Consensus 150 ~~~~~~-vViDEaH~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~-~~~~~ 217 (391)
T 1xti_A 150 LKHIKH-FILDECDKMLEQLDMRRDVQEIF---------RMTPHEKQVMMFSATLSKEIRPVCRKFMQDP-MEI-FVDDE 217 (391)
T ss_dssp CTTCSE-EEECSHHHHTSSHHHHHHHHHHH---------HTSCSSSEEEEEESSCCSTHHHHHHHHCSSC-EEE-ECCCC
T ss_pred ccccCE-EEEeCHHHHhhccchHHHHHHHH---------hhCCCCceEEEEEeeCCHHHHHHHHHHcCCC-eEE-EecCc
Confidence 357889 999999999873 2222222222 123568999999999986 344444333232 111 22222
Q ss_pred Cc--cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 FR--PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 ~R--p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.. +..+...+...+.. .. ...+..++... .++++||||++++.|+.++..+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~---~~-------~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~ 273 (391)
T 1xti_A 218 TKLTLHGLQQYYVKLKDN---EK-------NRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQ 273 (391)
T ss_dssp CCCCCTTCEEEEEECCGG---GH-------HHHHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred cccCcccceEEEEEcCch---hH-------HHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhC
Confidence 11 12233332222111 00 12233333333 5789999999999999999999865
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.89 E-value=1.7e-09 Score=92.56 Aligned_cols=114 Identities=12% Similarity=0.147 Sum_probs=69.7
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH--HHHHhhhcCCCCCeeeecCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI--YDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~--~~~a~wL~~~~~~~~~~~~~~ 126 (217)
+.++++ ||+||+|.+.+..+...+..++.. ..+..+++++|||+++. +.+..+++... .+..
T Consensus 145 ~~~~~~-iIiDEah~~~~~~~~~~~~~~~~~---------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----~~~~- 208 (367)
T 1hv8_A 145 LKNVKY-FILDEADEMLNMGFIKDVEKILNA---------CNKDKRILLFSATMPREILNLAKKYMGDYS-----FIKA- 208 (367)
T ss_dssp TTSCCE-EEEETHHHHHTTTTHHHHHHHHHT---------SCSSCEEEEECSSCCHHHHHHHHHHCCSEE-----EEEC-
T ss_pred cccCCE-EEEeCchHhhhhchHHHHHHHHHh---------CCCCceEEEEeeccCHHHHHHHHHHcCCCe-----EEEe-
Confidence 356789 999999999886666555554432 25789999999999854 33445554321 1111
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHh-cCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQY-SDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..+..+...+...+.. . ....+...+ ..+.++||||+|++.|+.++..|.+.
T Consensus 209 ~~~~~~~~~~~~~~~~---~----------~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~ 261 (367)
T 1hv8_A 209 KINANIEQSYVEVNEN---E----------RFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDI 261 (367)
T ss_dssp CSSSSSEEEEEECCGG---G----------HHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHT
T ss_pred cCCCCceEEEEEeChH---H----------HHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhc
Confidence 1112333332222110 1 112222222 45678999999999999999999865
No 19
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.89 E-value=5e-09 Score=91.28 Aligned_cols=121 Identities=11% Similarity=0.040 Sum_probs=68.5
Q ss_pred HHhhhhhHhhhhhhhcCC-CchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-HHHHhhhcCCCCCeeeecCC-C
Q psy3103 50 QLFRSGYLMILVHLLGEE-SRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI-YDIALWLGFGKPTVYAQIDD-S 126 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~-~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~-~~~a~wL~~~~~~~~~~~~~-~ 126 (217)
.++++ ||+||+|.+.+. .+...+..+.. ..+.+.|++++|||+++. ..++..+..++ ....... .
T Consensus 167 ~~~~~-iViDEah~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~ 234 (412)
T 3fht_A 167 KKIKV-FVLDEADVMIATQGHQDQSIRIQR---------MLPRNCQMLLFSATFEDSVWKFAQKVVPDP--NVIKLKREE 234 (412)
T ss_dssp GGCCE-EEEETHHHHHSTTTTHHHHHHHHH---------TSCTTCEEEEEESCCCHHHHHHHHHHSSSC--EEECCCGGG
T ss_pred hhCcE-EEEeCHHHHhhcCCcHHHHHHHHh---------hCCCCceEEEEEeecCHHHHHHHHHhcCCC--eEEeecccc
Confidence 56899 999999999863 33333332222 226789999999999864 34555444332 1111111 1
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
..+..+...+...+. ... ....+..++... .++++||||+|++.|+.++..+.+..
T Consensus 235 ~~~~~~~~~~~~~~~----~~~-----~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~ 290 (412)
T 3fht_A 235 ETLDTIKQYYVLCSS----RDE-----KFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEG 290 (412)
T ss_dssp SSCTTEEEEEEECSS----HHH-----HHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTT
T ss_pred ccccCceEEEEEcCC----hHH-----HHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCC
Confidence 112222222222111 000 011223333332 46799999999999999999998753
No 20
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.89 E-value=1.6e-09 Score=93.64 Aligned_cols=123 Identities=13% Similarity=0.054 Sum_probs=69.0
Q ss_pred HHHhhhhhHhhhhhhhcCC-CchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-HHHHhhhcCCCCCeeeecCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEE-SRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI-YDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~-~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~-~~~a~wL~~~~~~~~~~~~~~ 126 (217)
+.++++ ||+||+|.+.+. .++..+. ++.. ..++..|++++|||+++. ..+..++..++. .+......
T Consensus 143 ~~~~~~-iIiDEah~~~~~~~~~~~~~----~~~~-----~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~ 211 (395)
T 3pey_A 143 LQKIKI-FVLDEADNMLDQQGLGDQCI----RVKR-----FLPKDTQLVLFSATFADAVRQYAKKIVPNAN-TLELQTNE 211 (395)
T ss_dssp CTTCCE-EEEETHHHHHHSTTHHHHHH----HHHH-----TSCTTCEEEEEESCCCHHHHHHHHHHSCSCE-EECCCGGG
T ss_pred cccCCE-EEEEChhhhcCccccHHHHH----HHHH-----hCCCCcEEEEEEecCCHHHHHHHHHhCCCCe-EEEccccc
Confidence 346889 999999999873 2333322 2221 236789999999999864 566666654431 11111111
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
..+..+...+..... ... ....+..++.. ..++++||||++++.|+.++..+.+..
T Consensus 212 ~~~~~~~~~~~~~~~----~~~-----~~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~ 267 (395)
T 3pey_A 212 VNVDAIKQLYMDCKN----EAD-----KFDVLTELYGL-MTIGSSIIFVATKKTANVLYGKLKSEG 267 (395)
T ss_dssp CSCTTEEEEEEECSS----HHH-----HHHHHHHHHTT-TTSSEEEEECSCHHHHHHHHHHHHHTT
T ss_pred cccccccEEEEEcCc----hHH-----HHHHHHHHHHh-ccCCCEEEEeCCHHHHHHHHHHHHhcC
Confidence 112222222222111 000 01112222222 246799999999999999999998653
No 21
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.84 E-value=3.9e-09 Score=91.95 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=68.5
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-HH-HHhhhcCCCCCeeeecCCCC
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI-YD-IALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~-~~-~a~wL~~~~~~~~~~~~~~~ 127 (217)
.++.+ ||+||+|.+.+..++..++.++.. .++..+++++|||++.. .+ +..++... ..+ .+....
T Consensus 162 ~~~~~-vIiDEaH~~~~~~~~~~~~~i~~~---------~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~-~~~~~~ 228 (400)
T 1s2m_A 162 SDCSL-FIMDEADKMLSRDFKTIIEQILSF---------LPPTHQSLLFSATFPLTVKEFMVKHLHKP--YEI-NLMEEL 228 (400)
T ss_dssp TTCCE-EEEESHHHHSSHHHHHHHHHHHTT---------SCSSCEEEEEESCCCHHHHHHHHHHCSSC--EEE-SCCSSC
T ss_pred ccCCE-EEEeCchHhhhhchHHHHHHHHHh---------CCcCceEEEEEecCCHHHHHHHHHHcCCC--eEE-Eecccc
Confidence 45789 999999999876555555444332 25778999999999842 22 33444321 111 111222
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+..+..++...+.. .. ...+..++.. ..++++||||++++.|+.++..|.+.
T Consensus 229 ~~~~~~~~~~~~~~~---~k-------~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~ 281 (400)
T 1s2m_A 229 TLKGITQYYAFVEER---QK-------LHCLNTLFSK-LQINQAIIFCNSTNRVELLAKKITDL 281 (400)
T ss_dssp BCTTEEEEEEECCGG---GH-------HHHHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCceeEEEEechh---hH-------HHHHHHHHhh-cCCCcEEEEEecHHHHHHHHHHHHhc
Confidence 222232332222110 00 1223333333 34679999999999999999999875
No 22
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.83 E-value=2.9e-09 Score=96.90 Aligned_cols=122 Identities=9% Similarity=0.082 Sum_probs=69.2
Q ss_pred HHHhhhhhHhhhhhhhcCC-CchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEE-SRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~-~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
+.++++ ||+||+|.+.+. .++..+..+... ..++.|++++|||+++ .+.+..++..++. .+......
T Consensus 257 ~~~~~l-IIiDEaH~~~~~~~~~~~~~~i~~~---------~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-~i~~~~~~ 325 (508)
T 3fho_A 257 ARDIKV-FVLDEADNMLDQQGLGDQSMRIKHL---------LPRNTQIVLFSATFSERVEKYAERFAPNAN-EIRLKTEE 325 (508)
T ss_dssp CTTCCE-EEECCHHHHTTC--CHHHHHHHHHH---------SCTTCEEEEEESCCSTHHHHHHHHHSTTCE-EECCCCCC
T ss_pred ccCCCE-EEEechhhhcccCCcHHHHHHHHHh---------CCcCCeEEEEeCCCCHHHHHHHHHhcCCCe-EEEecccc
Confidence 457899 999999999873 344444433332 2568999999999997 6777777765531 11111111
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..+..+...+...... .. ....+..++.. ..++++||||++++.|+.++..+.+.
T Consensus 326 ~~~~~~~~~~~~~~~~----~~-----k~~~l~~ll~~-~~~~~~LVF~~s~~~a~~l~~~L~~~ 380 (508)
T 3fho_A 326 LSVEGIKQLYMDCQSE----EH-----KYNVLVELYGL-LTIGQSIIFCKKKDTAEEIARRMTAD 380 (508)
T ss_dssp ----CCCCEEEEC--C----HH-----HHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTT
T ss_pred CCcccceEEEEECCch----HH-----HHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhC
Confidence 1111222222211110 00 01112222222 24679999999999999999999764
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.79 E-value=5.5e-09 Score=88.48 Aligned_cols=130 Identities=14% Similarity=0.110 Sum_probs=78.8
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH--HHHHhhhcCCCCCeeeecCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI--YDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~--~~~a~wL~~~~~~~~~~~~~~ 126 (217)
+.++++ ||+||+|.+.+..++..+..++..+ +...+++++|||+++. +.+..|+.... .+...
T Consensus 127 ~~~~~~-iViDEah~~~~~~~~~~~~~~~~~~---------~~~~~~~~~SAT~~~~~~~~~~~~~~~~~-----~~~~~ 191 (337)
T 2z0m_A 127 LSSFEI-VIIDEADLMFEMGFIDDIKIILAQT---------SNRKITGLFSATIPEEIRKVVKDFITNYE-----EIEAC 191 (337)
T ss_dssp GGGCSE-EEEESHHHHHHTTCHHHHHHHHHHC---------TTCSEEEEEESCCCHHHHHHHHHHSCSCE-----EEECS
T ss_pred hhhCcE-EEEEChHHhhccccHHHHHHHHhhC---------CcccEEEEEeCcCCHHHHHHHHHhcCCce-----eeecc
Confidence 457789 9999999999877777776665542 5678899999999864 34666665321 12222
Q ss_pred CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhccc--cCCHHHHHHH
Q psy3103 127 FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEMSI--QTSPEVREIV 204 (217)
Q Consensus 127 ~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~~~--~l~~~e~~~l 204 (217)
..+..+...+...+.. .. ..+ ..+. -..++++||||++++.|+.++..+.+.... ..+.+++++.
T Consensus 192 ~~~~~~~~~~~~~~~~--~~---------~~~-~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~ 258 (337)
T 2z0m_A 192 IGLANVEHKFVHVKDD--WR---------SKV-QALR-ENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRN 258 (337)
T ss_dssp GGGGGEEEEEEECSSS--SH---------HHH-HHHH-TCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHH
T ss_pred cccCCceEEEEEeChH--HH---------HHH-HHHH-hCCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHH
Confidence 2333333333333221 00 111 1111 245789999999999999999888744321 1345555444
Q ss_pred HH
Q psy3103 205 DK 206 (217)
Q Consensus 205 ~~ 206 (217)
.+
T Consensus 259 ~~ 260 (337)
T 2z0m_A 259 ID 260 (337)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.76 E-value=3.2e-09 Score=91.98 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=41.6
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH--HHHHhhhcCCCCCeeeecCCCC
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI--YDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~--~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
.++.+ ||+||+|.+.+..++..+..++..+ ++..+++++|||+++. +.+..|+... ..+.......
T Consensus 161 ~~~~~-vIiDEah~~~~~~~~~~~~~~~~~~---------~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~ 228 (394)
T 1fuu_A 161 DKIKM-FILDEADEMLSSGFKEQIYQIFTLL---------PPTTQVVLLSATMPNDVLEVTTKFMRNP--VRILVKKDEL 228 (394)
T ss_dssp TTCCE-EEEETHHHHHHTTCHHHHHHHHHHS---------CTTCEEEEECSSCCHHHHHHHHHHCCSC--EEEEECC---
T ss_pred hhCcE-EEEEChHHhhCCCcHHHHHHHHHhC---------CCCceEEEEEEecCHHHHHHHHHhcCCC--eEEEecCccc
Confidence 36789 9999999998777777766665442 5789999999999863 2344454422 1111111111
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+..+...+...+.. .. ....+..++... .++++||||++++.|+.++..+.+.
T Consensus 229 ~~~~~~~~~~~~~~~----~~-----~~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~ 282 (394)
T 1fuu_A 229 TLEGIKQFYVNVEEE----EY-----KYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRND 282 (394)
T ss_dssp ----------------------------------------------------------------
T ss_pred cCCCceEEEEEcCch----hh-----HHHHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHc
Confidence 111111111111100 00 011122222222 3578999999999999999999764
No 25
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.73 E-value=1.7e-08 Score=96.52 Aligned_cols=118 Identities=8% Similarity=0.136 Sum_probs=73.3
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCc
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
+.++++ ||+||+|. |+...+.++..++.+. ...+..++|++|||+ +++.+++|++..+ .+....+
T Consensus 206 l~~~~~-lIlDEah~-----R~ld~d~~~~~l~~l~---~~~~~~~iIl~SAT~-~~~~l~~~~~~~~-----vi~v~gr 270 (773)
T 2xau_A 206 LSRYSC-IILDEAHE-----RTLATDILMGLLKQVV---KRRPDLKIIIMSATL-DAEKFQRYFNDAP-----LLAVPGR 270 (773)
T ss_dssp CTTEEE-EEECSGGG-----CCHHHHHHHHHHHHHH---HHCTTCEEEEEESCS-CCHHHHHHTTSCC-----EEECCCC
T ss_pred ccCCCE-EEecCccc-----cccchHHHHHHHHHHH---HhCCCceEEEEeccc-cHHHHHHHhcCCC-----cccccCc
Confidence 568899 99999995 3333333333333332 113679999999999 6789999997542 2233445
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHh--cCCCCeEEEeCChhHHHHHHHHHHH
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQY--SDNKPTLIFCATRKGVEHTCTILRQ 190 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sRk~~e~~A~~l~~ 190 (217)
+.|+++++...+. .++ . ...+..+.... ..++++||||++++.|+.++..|.+
T Consensus 271 ~~pv~~~~~~~~~----~~~-~----~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~ 325 (773)
T 2xau_A 271 TYPVELYYTPEFQ----RDY-L----DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISL 325 (773)
T ss_dssp CCCEEEECCSSCC----SCH-H----HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCc----hhH-H----HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHH
Confidence 5565554332221 111 0 11122222222 3578999999999999999999975
No 26
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.65 E-value=4.9e-09 Score=94.13 Aligned_cols=121 Identities=13% Similarity=0.124 Sum_probs=38.0
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-HHHHhhhcCCCCCeeeecCC-CC
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI-YDIALWLGFGKPTVYAQIDD-SF 127 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~-~~~a~wL~~~~~~~~~~~~~-~~ 127 (217)
+++++ ||+||+|.+.+.. |.. ..+.++. ...+.+.|++++|||+++. ..++..+..++ ..+ .+.. ..
T Consensus 234 ~~~~~-iViDEah~~~~~~-~~~--~~~~~i~-----~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~i-~~~~~~~ 302 (479)
T 3fmp_B 234 KKIKV-FVLDEADVMIATQ-GHQ--DQSIRIQ-----RMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVI-KLKREEE 302 (479)
T ss_dssp GGCCE-EEECCHHHHHTST-THH--HHHHHHH-----TTSCTTSEEEEEESCCCHHHHHHHHHHSSSE-EEE-EEC----
T ss_pred ccCCE-EEEECHHHHhhcC-CcH--HHHHHHH-----hhCCccceEEEEeCCCCHHHHHHHHHHcCCC-eEE-ecccccc
Confidence 68899 9999999998632 222 1111221 2236789999999999964 45555544332 111 1111 11
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+..+.+.+...+... . ....+..++.. ..+.++||||+|++.|+.++..|...
T Consensus 303 ~~~~~~~~~~~~~~~~----~-----~~~~l~~~~~~-~~~~~~lvF~~s~~~~~~l~~~L~~~ 356 (479)
T 3fmp_B 303 TLDTIKQYYVLCSSRD----E-----KFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKE 356 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCCceEEEEEeCCHH----H-----HHHHHHHHHhh-ccCCceEEEeCcHHHHHHHHHHHHhC
Confidence 1111112111111100 0 00111122222 23578999999999999999999764
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.59 E-value=8.2e-08 Score=84.38 Aligned_cols=121 Identities=17% Similarity=0.062 Sum_probs=66.5
Q ss_pred HHhhhhhHhhhhhhhcCC-----------CchhH-HHHHHHHHHhHHHhhc--CCCCceEEEEecc-CCCH---HHHHhh
Q psy3103 50 QLFRSGYLMILVHLLGEE-----------SRGPV-LEAVVCRMRTVQKSQR--ASQPIRFVAVSAT-IPNI---YDIALW 111 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~-----------~RG~~-lE~ll~RL~~l~~~~~--~~~~~riv~LSAT-l~n~---~~~a~w 111 (217)
.++++ ||+||+|.+.+. ++... ++.++..+..-..... ..+..|++++||| .+.. .-+..+
T Consensus 138 ~~~~~-iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 216 (414)
T 3oiy_A 138 KRFDF-VFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDL 216 (414)
T ss_dssp CCCSE-EEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHH
T ss_pred ccccE-EEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHh
Confidence 47899 999999998642 22222 5555554320000001 1177899999999 4532 234445
Q ss_pred hcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 112 LGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 112 L~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
++.... .....+..+...+...+ . ...+..++.. .+.++||||+|++.|+.++..|.+.
T Consensus 217 ~~~~~~------~~~~~~~~i~~~~~~~~-----~--------~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~ 275 (414)
T 3oiy_A 217 LNFTVG------RLVSVARNITHVRISSR-----S--------KEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRF 275 (414)
T ss_dssp HSCCSS------CCCCCCCSEEEEEESSC-----C--------HHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred hccCcC------ccccccccchheeeccC-----H--------HHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHc
Confidence 443311 11111222333322111 0 1123333333 2589999999999999999999875
Q ss_pred c
Q psy3103 192 M 192 (217)
Q Consensus 192 ~ 192 (217)
.
T Consensus 276 ~ 276 (414)
T 3oiy_A 276 K 276 (414)
T ss_dssp T
T ss_pred C
Confidence 3
No 28
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.54 E-value=5.5e-08 Score=91.67 Aligned_cols=125 Identities=9% Similarity=0.128 Sum_probs=84.5
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCc
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
.+.+++ |||||+|++.+.+||..++.++.++. ....+++++|||.+....++.+.+..- .+....|
T Consensus 237 ~~~v~l-vVIDEaH~l~d~~~g~~~~~~l~~l~--------~~~i~il~~SAT~~~i~~l~~~~~~~~-----~v~~~~r 302 (677)
T 3rc3_A 237 TTPYEV-AVIDEIQMIRDPARGWAWTRALLGLC--------AEEVHLCGEPAAIDLVMELMYTTGEEV-----EVRDYKR 302 (677)
T ss_dssp SSCEEE-EEECSGGGGGCTTTHHHHHHHHHHCC--------EEEEEEEECGGGHHHHHHHHHHHTCCE-----EEEECCC
T ss_pred cccCCE-EEEecceecCCccchHHHHHHHHccC--------ccceEEEeccchHHHHHHHHHhcCCce-----EEEEeee
Confidence 467799 99999999999999999998887742 267899999999888888888775431 2223345
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc------cccCCHHHHH
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM------SIQTSPEVRE 202 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~------~~~l~~~e~~ 202 (217)
+.++... ... ...+ .. .....+|||+|++.|+.++..|.+.. -..+++++|+
T Consensus 303 ~~~l~~~-----~~~-l~~l--------------~~--~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~ 360 (677)
T 3rc3_A 303 LTPISVL-----DHA-LESL--------------DN--LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKL 360 (677)
T ss_dssp SSCEEEC-----SSC-CCSG--------------GG--CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHH
T ss_pred cchHHHH-----HHH-HHHH--------------Hh--cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHH
Confidence 5444321 000 0000 01 13456999999999999999998753 1124666666
Q ss_pred HHHHHHh
Q psy3103 203 IVDKCMS 209 (217)
Q Consensus 203 ~l~~~~~ 209 (217)
+..+...
T Consensus 361 ~~~~~F~ 367 (677)
T 3rc3_A 361 AQAKKFN 367 (677)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.38 E-value=1e-06 Score=77.27 Aligned_cols=56 Identities=7% Similarity=-0.052 Sum_probs=37.0
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHH---HHhhhcC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYD---IALWLGF 114 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~---~a~wL~~ 114 (217)
+.++.+ ||+||+|.+.+... +..+...+... .+..++++||||..+ ..+ +..+++.
T Consensus 123 ~~~~~~-vIiDEaH~~~~~~~---~~~~~~~~~~~------~~~~~~l~lTaTp~~~~~~~~~l~~~l~~ 182 (494)
T 1wp9_A 123 LEDVSL-IVFDEAHRAVGNYA---YVFIAREYKRQ------AKNPLVIGLTASPGSTPEKIMEVINNLGI 182 (494)
T ss_dssp TTSCSE-EEEETGGGCSTTCH---HHHHHHHHHHH------CSSCCEEEEESCSCSSHHHHHHHHHHTTC
T ss_pred hhhceE-EEEECCcccCCCCc---HHHHHHHHHhc------CCCCeEEEEecCCCCCcHHHHHHHHhcCh
Confidence 346789 99999999986432 23344443322 578899999999973 344 4555543
No 30
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.33 E-value=4.6e-08 Score=87.76 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=58.6
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCc
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
++++++ ||+||+|.+ +...+..++.+..+. ..+++|+++||||+++ ....++..+. .+... .+
T Consensus 108 l~~~~~-iViDEah~~-~~~~~~~~~~~~~~~--------~~~~~~~i~~SAT~~~--~~~~~~~~~~--~~~~~---~~ 170 (451)
T 2jlq_A 108 VPNYNL-IVMDEAHFT-DPCSVAARGYISTRV--------EMGEAAAIFMTATPPG--STDPFPQSNS--PIEDI---ER 170 (451)
T ss_dssp CCCCSE-EEEETTTCC-SHHHHHHHHHHHHHH--------HTTSCEEEEECSSCTT--CCCSSCCCSS--CEEEE---EC
T ss_pred ccCCCE-EEEeCCccC-CcchHHHHHHHHHhh--------cCCCceEEEEccCCCc--cchhhhcCCC--ceEec---Cc
Confidence 558899 999999988 433444444443321 1467999999999975 1111111111 00000 01
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
+. +.. .+. . ... .+. ..++++||||+|++.|+.++..|.+.
T Consensus 171 ~~---------p~~----~~~--~-~~~----~l~--~~~~~~lVF~~s~~~a~~l~~~L~~~ 211 (451)
T 2jlq_A 171 EI---------PER----SWN--T-GFD----WIT--DYQGKTVWFVPSIKAGNDIANCLRKS 211 (451)
T ss_dssp CC---------CSS----CCS--S-SCH----HHH--HCCSCEEEECSSHHHHHHHHHHHHTT
T ss_pred cC---------Cch----hhH--H-HHH----HHH--hCCCCEEEEcCCHHHHHHHHHHHHHc
Confidence 11 110 010 0 001 111 23679999999999999999999765
No 31
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.30 E-value=1.3e-06 Score=86.38 Aligned_cols=122 Identities=18% Similarity=0.114 Sum_probs=68.1
Q ss_pred HHHhhhhhHhhhhhhhcCCCch-----------hH-HHHHHHHHHhHHHhhc--CCCCceEEEEecc-CCCH---HHHHh
Q psy3103 49 EQLFRSGYLMILVHLLGEESRG-----------PV-LEAVVCRMRTVQKSQR--ASQPIRFVAVSAT-IPNI---YDIAL 110 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG-----------~~-lE~ll~RL~~l~~~~~--~~~~~riv~LSAT-l~n~---~~~a~ 110 (217)
++++++ ||+||+|.+.+..|| .. ++.++..+..-..+.. .....|++++||| .+.. ..+..
T Consensus 194 ~~~l~~-lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~ 272 (1104)
T 4ddu_A 194 QKRFDF-VFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRD 272 (1104)
T ss_dssp TSCCSE-EEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHH
T ss_pred ccCcCE-EEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhc
Confidence 457999 999999998875433 12 4444443320000001 1167899999999 4532 23455
Q ss_pred hhcCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHH
Q psy3103 111 WLGFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQ 190 (217)
Q Consensus 111 wL~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~ 190 (217)
+++... ......+..+.+.++..+ . ...+..++... ++++||||+|++.|+.++..|..
T Consensus 273 ~l~i~v------~~~~~~~~~i~~~~~~~~-----k--------~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~ 331 (1104)
T 4ddu_A 273 LLNFTV------GRLVSVARNITHVRISSR-----S--------KEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKR 331 (1104)
T ss_dssp HTCCCC------CBCCCCCCCEEEEEESCC-----C--------HHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHH
T ss_pred ceeEEe------ccCCCCcCCceeEEEecC-----H--------HHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHh
Confidence 555321 111122223333332221 1 11223333332 48999999999999999999986
Q ss_pred hc
Q psy3103 191 EM 192 (217)
Q Consensus 191 ~~ 192 (217)
..
T Consensus 332 ~g 333 (1104)
T 4ddu_A 332 FK 333 (1104)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 32
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.29 E-value=2.9e-07 Score=82.33 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=58.7
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH-HHHHhhhcCCCCCeeeecCCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI-YDIALWLGFGKPTVYAQIDDSF 127 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~-~~~a~wL~~~~~~~~~~~~~~~ 127 (217)
++++++ ||+||+|.+ +..++..+..+...+ ...++|+++||||++.. ..++.+ .
T Consensus 97 ~~~l~~-vViDEah~~-~~~~~~~~~~~~~~~--------~~~~~~~l~~SAT~~~~~~~~~~~---------------~ 151 (440)
T 1yks_A 97 VVNWEV-IIMDEAHFL-DPASIAARGWAAHRA--------RANESATILMTATPPGTSDEFPHS---------------N 151 (440)
T ss_dssp CCCCSE-EEETTTTCC-SHHHHHHHHHHHHHH--------HTTSCEEEEECSSCTTCCCSSCCC---------------S
T ss_pred ccCccE-EEEECcccc-CcchHHHHHHHHHHh--------ccCCceEEEEeCCCCchhhhhhhc---------------C
Confidence 578999 999999999 323333333222221 14679999999999642 211111 1
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.| +......++... .... +..+ ...++++||||+|++.|+.++..|.+.
T Consensus 152 ~~--~~~~~~~~~~~~-~~~~---------~~~l---~~~~~~~lVF~~s~~~a~~l~~~L~~~ 200 (440)
T 1yks_A 152 GE--IEDVQTDIPSEP-WNTG---------HDWI---LADKRPTAWFLPSIRAANVMAASLRKA 200 (440)
T ss_dssp SC--EEEEECCCCSSC-CSSS---------CHHH---HHCCSCEEEECSCHHHHHHHHHHHHHT
T ss_pred CC--eeEeeeccChHH-HHHH---------HHHH---HhcCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 11 111111111111 0100 1111 124789999999999999999999865
No 33
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.28 E-value=1.3e-07 Score=88.23 Aligned_cols=105 Identities=13% Similarity=0.092 Sum_probs=64.4
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCc
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
++++++ ||+||+|.+ +..++..++.++.++. .++.|++++|||+++.. ..+...+ .+
T Consensus 275 l~~~~~-iViDEah~~-~~~~~~~~~~i~~~l~--------~~~~q~il~SAT~~~~~--~~~~~~~-----------~~ 331 (618)
T 2whx_A 275 VPNYNL-IVMDEAHFT-DPCSVAARGYISTRVE--------MGEAAAIFMTATPPGST--DPFPQSN-----------SP 331 (618)
T ss_dssp CCCCSE-EEEESTTCC-SHHHHHHHHHHHHHHH--------HTSCEEEEECSSCTTCC--CSSCCCS-----------SC
T ss_pred ccCCeE-EEEECCCCC-CccHHHHHHHHHHHhc--------ccCccEEEEECCCchhh--hhhhccC-----------Cc
Confidence 578999 999999999 4456667777776542 26799999999997542 1121111 11
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
.+++.. .++... ... .+..+ ...++++||||+|++.|+.++..|.+..
T Consensus 332 ~~~v~~---~~~~~~-~~~---------ll~~l---~~~~~~~LVF~~s~~~a~~l~~~L~~~g 379 (618)
T 2whx_A 332 IEDIER---EIPERS-WNT---------GFDWI---TDYQGKTVWFVPSIKAGNDIANCLRKSG 379 (618)
T ss_dssp EEEEEC---CCCSSC-CSS---------SCHHH---HHCCSCEEEECSSHHHHHHHHHHHHHTT
T ss_pred eeeecc---cCCHHH-HHH---------HHHHH---HhCCCCEEEEECChhHHHHHHHHHHHcC
Confidence 111110 011110 000 01111 1246799999999999999999998763
No 34
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.16 E-value=1.4e-05 Score=71.82 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=34.6
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN 104 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n 104 (217)
+.++++ ||+||+|.+.+. |. +..++.++..........+.+++++||||.++
T Consensus 125 ~~~~~~-vViDEah~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 125 LSVFTL-MIFDECHNTSKN--HP-YNQIMFRYLDHKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp GGGCSE-EEETTGGGCSTT--CH-HHHHHHHHHHHHTSSCCSCCCEEEEEESCCCC
T ss_pred cccCCE-EEEECccccCCc--ch-HHHHHHHHHHhhhccccCCCCeEEEEecCccc
Confidence 556899 999999999874 33 56555543222100112367899999999964
No 35
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.16 E-value=3.2e-06 Score=75.31 Aligned_cols=104 Identities=19% Similarity=0.149 Sum_probs=58.3
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCc
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
++++++ ||+||+|.++ .........++.+. ..+++++++||||.++. + . .+.....
T Consensus 91 ~~~l~~-vViDEaH~~~-----~~~~~~~~~l~~~~----~~~~~~~l~~SAT~~~~--~------~------~~~~~~~ 146 (431)
T 2v6i_A 91 VPNYNL-YIMDEAHFLD-----PASVAARGYIETRV----SMGDAGAIFMTATPPGT--T------E------AFPPSNS 146 (431)
T ss_dssp CCCCSE-EEEESTTCCS-----HHHHHHHHHHHHHH----HTTSCEEEEEESSCTTC--C------C------SSCCCSS
T ss_pred ccCCCE-EEEeCCccCC-----ccHHHHHHHHHHHh----hCCCCcEEEEeCCCCcc--h------h------hhcCCCC
Confidence 457899 9999999973 22233333333331 14689999999999852 0 0 1111111
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
| +......++... ... +...+. ..++++||||+|++.|+.++..|.+.
T Consensus 147 ~--i~~~~~~~~~~~-~~~----------~~~~l~--~~~~~~lVF~~~~~~~~~l~~~L~~~ 194 (431)
T 2v6i_A 147 P--IIDEETRIPDKA-WNS----------GYEWIT--EFDGRTVWFVHSIKQGAEIGTCLQKA 194 (431)
T ss_dssp C--CEEEECCCCSSC-CSS----------CCHHHH--SCSSCEEEECSSHHHHHHHHHHHHHT
T ss_pred c--eeeccccCCHHH-HHH----------HHHHHH--cCCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 1 111100111110 010 011111 23678999999999999999999865
No 36
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.16 E-value=1.7e-06 Score=77.76 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=58.0
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCc
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
++++++ ||+||+|.+.. ..+..+..+..++ ..++.|++++|||++... . .+.....
T Consensus 110 l~~~~~-iViDEaH~~~~-~~~~~~~~~~~~~--------~~~~~~~il~SAT~~~~~--~------------~~~~~~~ 165 (459)
T 2z83_A 110 VPNYNL-FVMDEAHFTDP-ASIAARGYIATKV--------ELGEAAAIFMTATPPGTT--D------------PFPDSNA 165 (459)
T ss_dssp CCCCSE-EEESSTTCCSH-HHHHHHHHHHHHH--------HTTSCEEEEECSSCTTCC--C------------SSCCCSS
T ss_pred ccCCcE-EEEECCccCCc-hhhHHHHHHHHHh--------ccCCccEEEEEcCCCcch--h------------hhccCCC
Confidence 568999 99999998632 2333333333221 147899999999998421 0 1111111
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
|+. .....++....... .. .+. ..++++||||+|++.|+.++..|.+.
T Consensus 166 pi~--~~~~~~~~~~~~~~-------~~----~l~--~~~~~~LVF~~s~~~~~~l~~~L~~~ 213 (459)
T 2z83_A 166 PIH--DLQDEIPDRAWSSG-------YE----WIT--EYAGKTVWFVASVKMGNEIAMCLQRA 213 (459)
T ss_dssp CEE--EEECCCCSSCCSSC-------CH----HHH--HCCSCEEEECSCHHHHHHHHHHHHHT
T ss_pred CeE--EecccCCcchhHHH-------HH----HHH--hcCCCEEEEeCChHHHHHHHHHHHhc
Confidence 211 11011111110000 01 111 23679999999999999999999865
No 37
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.14 E-value=8.8e-07 Score=70.12 Aligned_cols=56 Identities=13% Similarity=0.001 Sum_probs=44.5
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCC
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFG 115 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~ 115 (217)
.++++ +|+||+|.+.+.+++..++.++.++ ++..|++++|||+++ .+++++++..+
T Consensus 143 ~~~~~-iViDEah~~~~~~~~~~~~~i~~~~---------~~~~~~i~~SAT~~~~~~~~~~~~~~~ 199 (207)
T 2gxq_A 143 SRVEV-AVLDEADEMLSMGFEEEVEALLSAT---------PPSRQTLLFSATLPSWAKRLAERYMKN 199 (207)
T ss_dssp TTCSE-EEEESHHHHHHTTCHHHHHHHHHTS---------CTTSEEEEECSSCCHHHHHHHHHHCSS
T ss_pred hhceE-EEEEChhHhhccchHHHHHHHHHhC---------CccCeEEEEEEecCHHHHHHHHHHcCC
Confidence 45889 9999999998877888887765542 568999999999985 56777776544
No 38
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.13 E-value=1.2e-05 Score=72.45 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC--CHHHHHhhh
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP--NIYDIALWL 112 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~--n~~~~a~wL 112 (217)
+.++++ ||+||+|.+.+. |. ++.++.++... ......+.+++++||||.+ |..++.+|+
T Consensus 128 ~~~~~~-vViDEah~~~~~--~~-~~~~~~~~~~~-~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~ 188 (556)
T 4a2p_A 128 LSIFTL-MIFDECHNTTGN--HP-YNVLMTRYLEQ-KFNSASQLPQILGLTASVGVGNAKNIEETI 188 (556)
T ss_dssp STTCSE-EEEETGGGCSTT--SH-HHHHHHHHHHH-HHCC---CCEEEEEESCCCCTTCSSHHHHH
T ss_pred cccCCE-EEEECCcccCCc--ch-HHHHHHHHHHh-hhcccCCCCeEEEEeCCcccCchhhHHHHH
Confidence 456789 999999999874 44 55555443221 1122356799999999994 555555554
No 39
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.13 E-value=5.1e-07 Score=72.94 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=45.0
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFG 115 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~ 115 (217)
++++++ ||+||+|.+.+.+++..++.++.++ .++.|++++|||+++ ..+++..+-.+
T Consensus 165 ~~~~~~-lViDEah~~~~~~~~~~~~~i~~~~---------~~~~~~l~~SAT~~~~~~~~~~~~l~~ 222 (228)
T 3iuy_A 165 LRSITY-LVIDEADKMLDMEFEPQIRKILLDV---------RPDRQTVMTSATWPDTVRQLALSYLKD 222 (228)
T ss_dssp CTTCCE-EEECCHHHHHHTTCHHHHHHHHHHS---------CSSCEEEEEESCCCHHHHHHHHTTCSS
T ss_pred cccceE-EEEECHHHHhccchHHHHHHHHHhC---------CcCCeEEEEEeeCCHHHHHHHHHHCCC
Confidence 456899 9999999999888999988887653 578999999999985 45566554433
No 40
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.11 E-value=2e-06 Score=68.10 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=40.0
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHh
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIAL 110 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~ 110 (217)
.++++ +|+||+|.+.+.+++..++.++.++ +++.|++++|||+++ ..++.+
T Consensus 145 ~~~~~-lViDEah~~~~~~~~~~l~~i~~~~---------~~~~~~l~~SAT~~~~~~~~~~ 196 (206)
T 1vec_A 145 DHVQM-IVLDEADKLLSQDFVQIMEDIILTL---------PKNRQILLYSATFPLSVQKFMN 196 (206)
T ss_dssp TTCCE-EEEETHHHHTSTTTHHHHHHHHHHS---------CTTCEEEEEESCCCHHHHHHHH
T ss_pred ccCCE-EEEEChHHhHhhCcHHHHHHHHHhC---------CccceEEEEEeeCCHHHHHHHH
Confidence 37899 9999999999878888887776552 568999999999984 344444
No 41
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.11 E-value=4.9e-07 Score=73.97 Aligned_cols=57 Identities=12% Similarity=0.014 Sum_probs=45.2
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFG 115 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~ 115 (217)
++++++ +|+||+|.+.+.+++..++.++.++ +++.|++++|||+++ ..++++.+..+
T Consensus 174 ~~~~~~-lViDEah~l~~~~~~~~~~~i~~~~---------~~~~q~~~~SAT~~~~~~~~~~~~l~~ 231 (242)
T 3fe2_A 174 LRRTTY-LVLDEADRMLDMGFEPQIRKIVDQI---------RPDRQTLMWSATWPKEVRQLAEDFLKD 231 (242)
T ss_dssp CTTCCE-EEETTHHHHHHTTCHHHHHHHHTTS---------CSSCEEEEEESCCCHHHHHHHHHHCSS
T ss_pred cccccE-EEEeCHHHHhhhCcHHHHHHHHHhC---------CccceEEEEEeecCHHHHHHHHHHCCC
Confidence 347889 9999999999888888888776543 578999999999985 56666655444
No 42
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.10 E-value=8.7e-06 Score=80.88 Aligned_cols=113 Identities=10% Similarity=0.079 Sum_probs=65.4
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecC-CCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQID-DSF 127 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~-~~~ 127 (217)
++++++ ||+||+|.++ ......+.. + ..+.++++||||... ..+...+.... ....+. +..
T Consensus 723 ~~~l~l-vIiDEaH~~g-----~~~~~~l~~---l------~~~~~vl~lSATp~p-~~l~~~~~~~~--~~~~i~~~~~ 784 (1151)
T 2eyq_A 723 FKDLGL-LIVDEEHRFG-----VRHKERIKA---M------RANVDILTLTATPIP-RTLNMAMSGMR--DLSIIATPPA 784 (1151)
T ss_dssp CSSEEE-EEEESGGGSC-----HHHHHHHHH---H------HTTSEEEEEESSCCC-HHHHHHHTTTS--EEEECCCCCC
T ss_pred ccccce-EEEechHhcC-----hHHHHHHHH---h------cCCCCEEEEcCCCCh-hhHHHHHhcCC--CceEEecCCC
Confidence 457899 9999999964 333333333 3 367899999999642 23333332211 111111 111
Q ss_pred ccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 128 RPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 128 Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
...++..++..++ . ......+...+.++++++|||++++.++.++..|.+..
T Consensus 785 ~r~~i~~~~~~~~-----~--------~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~ 836 (1151)
T 2eyq_A 785 RRLAVKTFVREYD-----S--------MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 836 (1151)
T ss_dssp BCBCEEEEEEECC-----H--------HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHC
T ss_pred CccccEEEEecCC-----H--------HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 1122333222211 0 11123344456678999999999999999999998874
No 43
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.09 E-value=1.2e-06 Score=72.82 Aligned_cols=68 Identities=10% Similarity=-0.012 Sum_probs=51.8
Q ss_pred ecccCCChhHHHHHH--------HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-H
Q psy3103 35 YHHAGMSPEDRTIIE--------QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-I 105 (217)
Q Consensus 35 ~~h~~l~~~~~~~~l--------~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~ 105 (217)
++-.+.|++.....+ +++++ ||+||+|.+.+.+++..++.++.++ +...|++++|||+++ .
T Consensus 177 ~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~-lViDEah~l~~~~~~~~l~~i~~~~---------~~~~q~l~~SAT~~~~v 246 (262)
T 3ly5_A 177 INIIVATPGRLLDHMQNTPGFMYKNLQC-LVIDEADRILDVGFEEELKQIIKLL---------PTRRQTMLFSATQTRKV 246 (262)
T ss_dssp CSEEEECHHHHHHHHHHCTTCCCTTCCE-EEECSHHHHHHTTCHHHHHHHHHHS---------CSSSEEEEECSSCCHHH
T ss_pred CCEEEEcHHHHHHHHHccCCcccccCCE-EEEcChHHHhhhhHHHHHHHHHHhC---------CCCCeEEEEEecCCHHH
Confidence 455566776554433 45889 9999999999888999988887653 577899999999995 5
Q ss_pred HHHHhhh
Q psy3103 106 YDIALWL 112 (217)
Q Consensus 106 ~~~a~wL 112 (217)
+++++..
T Consensus 247 ~~~~~~~ 253 (262)
T 3ly5_A 247 EDLARIS 253 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666644
No 44
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.02 E-value=8.2e-06 Score=75.08 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=31.3
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC--HHHHHhhhcC
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN--IYDIALWLGF 114 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n--~~~~a~wL~~ 114 (217)
..+.+ ||+||+|.+.+. .+..+..++..+ +..++++||||..+ ..++..+++.
T Consensus 301 ~~~~l-vIiDEaH~~~~~-~~~~~~~il~~~----------~~~~~l~lTATP~~~~~~~~~~~f~~ 355 (590)
T 3h1t_A 301 DFFDL-IIIDECHRGSAR-DNSNWREILEYF----------EPAFQIGMTATPLREDNRDTYRYFGN 355 (590)
T ss_dssp TSCSE-EEESCCC----------CHHHHHHS----------TTSEEEEEESSCSCTTTHHHHHHSCS
T ss_pred CccCE-EEEECCcccccc-chHHHHHHHHhC----------CcceEEEeccccccccchhHHHHcCC
Confidence 35789 999999999863 234555555442 45789999999764 3446666653
No 45
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.02 E-value=1.1e-06 Score=71.45 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=44.0
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCC
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFG 115 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~ 115 (217)
.++++ +|+||+|.+.+.+++..++.++.++ ++..|++++|||+++ ..++++.+-.+
T Consensus 170 ~~~~~-lViDEah~~~~~~~~~~~~~i~~~~---------~~~~~~l~~SAT~~~~~~~~~~~~~~~ 226 (236)
T 2pl3_A 170 TDLQM-LVLDEADRILDMGFADTMNAVIENL---------PKKRQTLLFSATQTKSVKDLARLSLKN 226 (236)
T ss_dssp TTCCE-EEETTHHHHHHTTTHHHHHHHHHTS---------CTTSEEEEEESSCCHHHHHHHHHSCSS
T ss_pred ccccE-EEEeChHHHhcCCcHHHHHHHHHhC---------CCCCeEEEEEeeCCHHHHHHHHHhCCC
Confidence 46779 9999999999877888877776542 568899999999984 66777765544
No 46
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.02 E-value=1.5e-06 Score=69.89 Aligned_cols=69 Identities=13% Similarity=0.055 Sum_probs=47.6
Q ss_pred ccCCChhHHHHH-------HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHH
Q psy3103 37 HAGMSPEDRTII-------EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDI 108 (217)
Q Consensus 37 h~~l~~~~~~~~-------l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~ 108 (217)
-.+.|++..... +.++++ +|+||+|.+.+.+++..++.++.++ +++.|++++|||+++ ..++
T Consensus 129 Iiv~Tp~~l~~~l~~~~~~~~~~~~-lViDEah~~~~~~~~~~l~~i~~~~---------~~~~~~l~~SAT~~~~~~~~ 198 (219)
T 1q0u_A 129 IVIGTPGRINDFIREQALDVHTAHI-LVVDEADLMLDMGFITDVDQIAARM---------PKDLQMLVFSATIPEKLKPF 198 (219)
T ss_dssp EEEECHHHHHHHHHTTCCCGGGCCE-EEECSHHHHHHTTCHHHHHHHHHTS---------CTTCEEEEEESCCCGGGHHH
T ss_pred EEEeCHHHHHHHHHcCCCCcCcceE-EEEcCchHHhhhChHHHHHHHHHhC---------CcccEEEEEecCCCHHHHHH
Confidence 344466544332 457899 9999999999877877777666542 568899999999984 3444
Q ss_pred HhhhcCC
Q psy3103 109 ALWLGFG 115 (217)
Q Consensus 109 a~wL~~~ 115 (217)
.+.+-.+
T Consensus 199 ~~~~~~~ 205 (219)
T 1q0u_A 199 LKKYMEN 205 (219)
T ss_dssp HHHHCSS
T ss_pred HHHHcCC
Confidence 4443333
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.00 E-value=3.7e-07 Score=89.96 Aligned_cols=123 Identities=12% Similarity=0.033 Sum_probs=71.8
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHh--hcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKS--QRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDS 126 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~--~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~ 126 (217)
++++++ ||+||+|.+.+ +|..++.++.++...... ...+...|++++|||+++..+++.++..+.. .+ .+...
T Consensus 173 L~~l~~-lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~-~i-~v~~~ 247 (1054)
T 1gku_B 173 LGHFDF-IFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLL-NF-DIGSS 247 (1054)
T ss_dssp SCCCSE-EEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHH-CC-CCSCC
T ss_pred hccCCE-EEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcce-EE-EccCc
Confidence 346779 99999999997 899999999886321100 1123567899999999976544444322110 00 11111
Q ss_pred -CccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 127 -FRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 127 -~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..+..+.+.+. + ... . ..+..++... +.++||||+|++.|+.++..|.+.
T Consensus 248 ~~~~~~i~~~~~--~-~~k---~-------~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~ 298 (1054)
T 1gku_B 248 RITVRNVEDVAV--N-DES---I-------STLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK 298 (1054)
T ss_dssp EECCCCEEEEEE--S-CCC---T-------TTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS
T ss_pred ccCcCCceEEEe--c-hhH---H-------HHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc
Confidence 11112223222 1 111 0 1122222222 678999999999999999998764
No 48
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=97.98 E-value=3.5e-05 Score=71.99 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=22.2
Q ss_pred CCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 168 NKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 168 ~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
+.++||||++++.|+.++..|...
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~ 423 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITEN 423 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSS
T ss_pred CCcEEEEECcHHHHHHHHHHHHhC
Confidence 789999999999999999999864
No 49
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.98 E-value=1.6e-06 Score=70.70 Aligned_cols=56 Identities=11% Similarity=0.187 Sum_probs=42.6
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCC
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFG 115 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~ 115 (217)
.++++ ||+||+|.+.+.+++..+..++.++ +...|++++|||+++ ..++++.+-.+
T Consensus 172 ~~~~~-lViDEah~~~~~~~~~~l~~i~~~~---------~~~~~~i~~SAT~~~~~~~~~~~~l~~ 228 (237)
T 3bor_A 172 KWIKM-FVLDEADEMLSRGFKDQIYEIFQKL---------NTSIQVVLLSATMPTDVLEVTKKFMRD 228 (237)
T ss_dssp TTCCE-EEEESHHHHHHTTCHHHHHHHHHHS---------CTTCEEEEECSSCCHHHHHHHHHHCSS
T ss_pred ccCcE-EEECCchHhhccCcHHHHHHHHHhC---------CCCCeEEEEEEecCHHHHHHHHHHCCC
Confidence 35899 9999999998777887777766542 578999999999984 55666554333
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.98 E-value=6.6e-06 Score=77.48 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=57.8
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCc
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
++++++ ||+||+|.+. ......+..++... .....|+++||||++..- . .+.....
T Consensus 330 l~~l~l-vViDEaH~~~-----~~~~~~~~~l~~~~----~~~~~~vl~~SAT~~~~i--------~------~~~~~~~ 385 (673)
T 2wv9_A 330 VPNYNL-FVMDEAHFTD-----PASIAARGYIATRV----EAGEAAAIFMTATPPGTS--------D------PFPDTNS 385 (673)
T ss_dssp CCCCSE-EEEESTTCCC-----HHHHHHHHHHHHHH----HTTSCEEEEECSSCTTCC--------C------SSCCCSS
T ss_pred cccceE-EEEeCCcccC-----ccHHHHHHHHHHhc----cccCCcEEEEcCCCChhh--------h------hhcccCC
Confidence 468999 9999999982 22122222222221 136799999999997320 0 1111111
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
++......++... ... .+.. ....++++||||+|++.|+.++..|.+.
T Consensus 386 --~i~~v~~~~~~~~-~~~---------~l~~---l~~~~~~~lVF~~s~~~~e~la~~L~~~ 433 (673)
T 2wv9_A 386 --PVHDVSSEIPDRA-WSS---------GFEW---ITDYAGKTVWFVASVKMSNEIAQCLQRA 433 (673)
T ss_dssp --CEEEEECCCCSSC-CSS---------CCHH---HHSCCSCEEEECSSHHHHHHHHHHHHTT
T ss_pred --ceEEEeeecCHHH-HHH---------HHHH---HHhCCCCEEEEECCHHHHHHHHHHHHhC
Confidence 2111111111111 010 0111 1235789999999999999999999865
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.96 E-value=4.3e-06 Score=78.53 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.8
Q ss_pred CCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 167 DNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 167 ~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
+++++||||+|++.|+.++..|.+.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~ 419 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL 419 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC
Confidence 5789999999999999999999865
No 52
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.96 E-value=3.8e-06 Score=67.38 Aligned_cols=54 Identities=11% Similarity=0.178 Sum_probs=41.4
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhc
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLG 113 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~ 113 (217)
.++++ ||+||+|.+.+.+++..++.++.++ ++..|++++|||+++ ..++++.+.
T Consensus 154 ~~~~~-iViDEah~~~~~~~~~~l~~i~~~~---------~~~~~~i~lSAT~~~~~~~~~~~~~ 208 (224)
T 1qde_A 154 DKIKM-FILDEADEMLSSGFKEQIYQIFTLL---------PPTTQVVLLSATMPNDVLEVTTKFM 208 (224)
T ss_dssp TTCCE-EEEETHHHHHHTTCHHHHHHHHHHS---------CTTCEEEEEESSCCHHHHHHHHHHC
T ss_pred hhCcE-EEEcChhHHhhhhhHHHHHHHHHhC---------CccCeEEEEEeecCHHHHHHHHHHC
Confidence 35889 9999999998877887777666542 578999999999996 455555443
No 53
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.94 E-value=2.8e-05 Score=72.60 Aligned_cols=51 Identities=6% Similarity=0.100 Sum_probs=33.6
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
+.++++ ||+||+|.+.+.. .+..++.++..........+.+++++||||.+
T Consensus 134 l~~~~~-vViDEaH~~~~~~---~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 134 LSIFTL-MIFDECHNTSKQH---PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp GGGCSE-EEEETGGGCSTTC---HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred cccccE-EEEeCCCcccCcc---cHHHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 556799 9999999999643 34444443321110112346799999999987
No 54
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.93 E-value=1.8e-06 Score=70.45 Aligned_cols=59 Identities=12% Similarity=-0.020 Sum_probs=38.0
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhc
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLG 113 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~ 113 (217)
+.++++ ||+||+|.+.+..++...+.+...++.+ ..++.|+++||||+++ ..++++...
T Consensus 173 ~~~~~~-lViDEah~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~SAT~~~~v~~~~~~~l 232 (245)
T 3dkp_A 173 LASVEW-LVVDESDKLFEDGKTGFRDQLASIFLAC-----TSHKVRRAMFSATFAYDVEQWCKLNL 232 (245)
T ss_dssp CTTCCE-EEESSHHHHHHHC--CHHHHHHHHHHHC-----CCTTCEEEEEESSCCHHHHHHHHHHS
T ss_pred cccCcE-EEEeChHHhcccccccHHHHHHHHHHhc-----CCCCcEEEEEeccCCHHHHHHHHHhC
Confidence 346889 9999999998754444444444443332 2567899999999973 344444443
No 55
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.91 E-value=3.5e-06 Score=68.24 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=36.7
Q ss_pred HHHhhhhhHhhhhhhhcCCC-chhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEES-RGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN 104 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~-RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n 104 (217)
+.++++ +|+||+|.+.+.+ ++..++.++.++ +...|++++|||+++
T Consensus 164 ~~~~~~-lViDEah~~~~~~~~~~~~~~i~~~~---------~~~~~~l~lSAT~~~ 210 (230)
T 2oxc_A 164 PGSIRL-FILDEADKLLEEGSFQEQINWIYSSL---------PASKQMLAVSATYPE 210 (230)
T ss_dssp GGGCCE-EEESSHHHHHSTTSSHHHHHHHHHHS---------CSSCEEEEEESCCCH
T ss_pred cccCCE-EEeCCchHhhcCcchHHHHHHHHHhC---------CCCCeEEEEEeccCH
Confidence 357789 9999999998765 777777766542 568899999999874
No 56
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.91 E-value=4.2e-06 Score=68.20 Aligned_cols=58 Identities=17% Similarity=0.105 Sum_probs=39.9
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGK 116 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~ 116 (217)
++++++ ||+||+|.. |......+..++.+. ...++.|++++|||+++.. +++|++..+
T Consensus 174 l~~~~~-lVlDEah~~-----~~~~~~~~~~l~~i~---~~~~~~~~il~SAT~~~~~-~~~~~~~~p 231 (235)
T 3llm_A 174 IRGISH-VIVDEIHER-----DINTDFLLVVLRDVV---QAYPEVRIVLMSATIDTSM-FCEYFFNCP 231 (235)
T ss_dssp CTTCCE-EEECCTTSC-----CHHHHHHHHHHHHHH---HHCTTSEEEEEECSSCCHH-HHHHTTSCC
T ss_pred hcCCcE-EEEECCccC-----CcchHHHHHHHHHHH---hhCCCCeEEEEecCCCHHH-HHHHcCCCC
Confidence 568999 999999973 233333322333321 1146799999999999877 999998653
No 57
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.90 E-value=4.4e-06 Score=68.81 Aligned_cols=56 Identities=7% Similarity=-0.006 Sum_probs=43.6
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCC
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFG 115 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~ 115 (217)
.++++ ||+||+|.+.+.+++..++.++..+ ++..|++++|||+++ ..++++++-.+
T Consensus 185 ~~~~~-lViDEah~l~~~~~~~~l~~i~~~~---------~~~~~~l~~SAT~~~~v~~~~~~~l~~ 241 (249)
T 3ber_A 185 RALKY-LVMDEADRILNMDFETEVDKILKVI---------PRDRKTFLFSATMTKKVQKLQRAALKN 241 (249)
T ss_dssp TTCCE-EEECSHHHHHHTTCHHHHHHHHHSS---------CSSSEEEEEESSCCHHHHHHHHHHCSS
T ss_pred cccCE-EEEcChhhhhccChHHHHHHHHHhC---------CCCCeEEEEeccCCHHHHHHHHHHCCC
Confidence 34789 9999999999878888887776542 567999999999984 56677765544
No 58
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.86 E-value=0.00012 Score=69.94 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=35.0
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
+.++++ ||+||+|.+.+. +. +..++.++... ......+.+++++||||.+
T Consensus 369 ~~~~~~-iViDEaH~~~~~--~~-~~~i~~~~~~~-~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 369 LSIFTL-MIFDECHNTTGN--HP-YNVLMTRYLEQ-KFNSASQLPQILGLTASVG 418 (797)
T ss_dssp GGGCSE-EEETTGGGCSTT--SH-HHHHHHHHHHH-HHTTCCCCCEEEEEESCCC
T ss_pred cccCCE-EEEECccccCCC--cc-HHHHHHHHHHH-hhccCCCCCeEEEEcCCcc
Confidence 456799 999999999974 33 66666554322 1223356799999999994
No 59
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.86 E-value=1.1e-06 Score=72.09 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=44.5
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFG 115 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~ 115 (217)
++++++ +|+||+|.+.+.+++..++.++.+++.. ...+.|++++|||+++ ..++++.+..+
T Consensus 172 ~~~~~~-lViDEah~~~~~~~~~~~~~i~~~~~~~-----~~~~~q~l~~SAT~~~~~~~~~~~~l~~ 233 (253)
T 1wrb_A 172 LEFCKY-IVLDEADRMLDMGFEPQIRKIIEESNMP-----SGINRQTLMFSATFPKEIQKLAADFLYN 233 (253)
T ss_dssp CTTCCE-EEEETHHHHHHTTCHHHHHHHHHSSCCC-----CGGGCEEEEEESSCCHHHHHHHHHHCSS
T ss_pred hhhCCE-EEEeCHHHHHhCchHHHHHHHHhhccCC-----CCCCcEEEEEEEeCCHHHHHHHHHHcCC
Confidence 346789 9999999999888999998888753210 0126899999999985 55666655433
No 60
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.81 E-value=4e-06 Score=71.18 Aligned_cols=57 Identities=7% Similarity=0.062 Sum_probs=41.7
Q ss_pred HHHhhhhhHhhhhhhhcC-CCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCC
Q psy3103 49 EQLFRSGYLMILVHLLGE-ESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFG 115 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~-~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~ 115 (217)
++++++ ||+||+|.+.+ ..++..+..++.. .+++.|++++|||+++ ...+++.+-.+
T Consensus 233 l~~l~~-lVlDEad~l~~~~~~~~~~~~i~~~---------~~~~~q~i~~SAT~~~~v~~~a~~~l~~ 291 (300)
T 3fmo_B 233 PKKIKV-FVLDEADVMIATQGHQDQSIRIQRM---------LPRNCQMLLFSATFEDSVWKFAQKVVPD 291 (300)
T ss_dssp GGGCSE-EEETTHHHHHHSTTHHHHHHHHHTT---------SCTTCEEEEEESCCCHHHHHHHHHHSSS
T ss_pred hhhceE-EEEeCHHHHhhccCcHHHHHHHHHh---------CCCCCEEEEEeccCCHHHHHHHHHHCCC
Confidence 458999 99999999987 4455554444322 2678999999999995 56677766554
No 61
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.71 E-value=4.9e-06 Score=66.63 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=38.1
Q ss_pred HHHhhhhhHhhhhhhhcCC-CchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC-HHHHHhhhcCC
Q psy3103 49 EQLFRSGYLMILVHLLGEE-SRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN-IYDIALWLGFG 115 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~-~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n-~~~~a~wL~~~ 115 (217)
+.++++ +|+||+|.+.+. .+...+..++. ..+++.|++++|||+++ .+++++.+-.+
T Consensus 156 ~~~~~~-lViDEah~~~~~~~~~~~~~~i~~---------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~ 214 (220)
T 1t6n_A 156 LKHIKH-FILDECDKMLEQLDMRRDVQEIFR---------MTPHEKQVMMFSATLSKEIRPVCRKFMQD 214 (220)
T ss_dssp CTTCCE-EEEESHHHHHSSHHHHHHHHHHHH---------TSCSSSEEEEEESCCCTTTHHHHHTTCSS
T ss_pred cccCCE-EEEcCHHHHhcccCcHHHHHHHHH---------hCCCcCeEEEEEeecCHHHHHHHHHHcCC
Confidence 347789 999999999863 22233332222 22568999999999995 56676655443
No 62
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.69 E-value=8.2e-05 Score=69.88 Aligned_cols=124 Identities=15% Similarity=0.059 Sum_probs=66.9
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHh----h------------cCCCCceEEEEeccCCCHHHHHhhh
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKS----Q------------RASQPIRFVAVSATIPNIYDIALWL 112 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~----~------------~~~~~~riv~LSATl~n~~~~a~wL 112 (217)
+.+-.+ ||+||+|.+.+ ..|..++....++..+... . ......|++++|||.++.. +..
T Consensus 323 l~~~~l-lVlDEah~~~~-~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~-~~~-- 397 (664)
T 1c4o_A 323 FPEDFL-VFLDESHVTVP-QLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFE-LAH-- 397 (664)
T ss_dssp SCTTCE-EEEETHHHHHH-HHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHH-HHH--
T ss_pred HhhccE-EEEecccccHH-HHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHH-HHh--
Confidence 344568 99999998875 3555566555554332100 0 0013578999999987543 221
Q ss_pred cCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 113 GFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 113 ~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
. . .+ +....+|..+..-.+...... .+. ...+..+.....++.++||||+|++.|+.++..|.+.
T Consensus 398 ~-~---~~--~~~~~r~~~l~~p~i~v~~~~--~~~------~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~ 462 (664)
T 1c4o_A 398 S-G---RV--VEQIIRPTGLLDPLVRVKPTE--NQI------LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH 462 (664)
T ss_dssp C-S---EE--EEECSCTTCCCCCEEEEECST--THH------HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred h-h---Ce--eeeeeccCCCCCCeEEEeccc--chH------HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc
Confidence 1 1 00 111123322211111111111 111 1122333334456889999999999999999999875
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=97.64 E-value=2.2e-05 Score=70.04 Aligned_cols=40 Identities=23% Similarity=0.129 Sum_probs=29.7
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCC
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPN 104 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n 104 (217)
+++.+ ||+||+|.+.+..+.. ++. . -+..++++||||..+
T Consensus 191 ~~~~l-iIvDEaH~~~~~~~~~----~~~----~------~~~~~~l~lSATp~~ 230 (472)
T 2fwr_A 191 NRFML-LIFDEVHHLPAESYVQ----IAQ----M------SIAPFRLGLTATFER 230 (472)
T ss_dssp TTCSE-EEEETGGGTTSTTTHH----HHH----T------CCCSEEEEEESCCCC
T ss_pred CCCCE-EEEECCcCCCChHHHH----HHH----h------cCCCeEEEEecCccC
Confidence 46899 9999999999865432 221 1 256789999999974
No 64
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.64 E-value=0.00034 Score=68.07 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=34.8
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
+.++++ ||+||+|.+.+. +. +..++.++... ......+.+++++||||.+
T Consensus 369 l~~~~l-iViDEaH~~~~~--~~-~~~i~~~~~~~-~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 369 LSIFTL-MIFDECHNTTGN--HP-YNVLMTRYLEQ-KFNSASQLPQILGLTASVG 418 (936)
T ss_dssp GGGCSE-EEEETGGGCSTT--CH-HHHHHHHHHHH-HHTTCSCCCEEEEEESCCC
T ss_pred ccCCCE-EEEECccccCCC--cc-HHHHHHHHHHH-hhccCCCcCeEEEecCCcc
Confidence 456799 999999999974 33 66666554322 1122356799999999994
No 65
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.58 E-value=0.00022 Score=66.89 Aligned_cols=124 Identities=15% Similarity=0.050 Sum_probs=65.4
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHh-hc---------------CCCCceEEEEeccCCCHHHHHhhh
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKS-QR---------------ASQPIRFVAVSATIPNIYDIALWL 112 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~-~~---------------~~~~~riv~LSATl~n~~~~a~wL 112 (217)
+.+-.+ +|+||+|.+.+ ..|..++....++..+... .. .+...|++++|||.+... +..
T Consensus 329 l~~~~l-lVlDEa~~~l~-~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~-~~~-- 403 (661)
T 2d7d_A 329 FPDDFM-IVVDESHVTIP-QVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE-IEH-- 403 (661)
T ss_dssp SCSSCE-EEEETHHHHHH-HHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEECSSCCHHH-HHH--
T ss_pred cccCcE-EEEecHHHHHH-HHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEEecCCChhH-HHh--
Confidence 334458 99999999875 2455555555444322100 00 013678999999986432 221
Q ss_pred cCCCCCeeeecCCCCccccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 113 GFGKPTVYAQIDDSFRPVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 113 ~~~~~~~~~~~~~~~Rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
. .. .+ ....+|..+..-.+...... ... ...+..+.....++.++||||+|++.|+.++..|.+.
T Consensus 404 ~-~~--~~---~~~~r~~~l~~p~i~v~~~~--~~~------~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~ 468 (661)
T 2d7d_A 404 T-DE--MV---EQIIRPTGLLDPLIDVRPIE--GQI------DDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEI 468 (661)
T ss_dssp C-SS--CE---EECCCTTCCCCCEEEEECST--THH------HHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred h-hC--ee---eeeecccCCCCCeEEEeccc--chH------HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhc
Confidence 1 11 00 11122221111111111111 111 1122333344556889999999999999999999875
No 66
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.54 E-value=4e-05 Score=73.31 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=56.6
Q ss_pred HHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCc
Q psy3103 49 EQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFR 128 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~R 128 (217)
+.++++ ||+||+|.++...|+. + ......+++++||||.. ++.++..+-.+.......-.+..|
T Consensus 488 ~~~l~l-VVIDEaHr~g~~qr~~--------l------~~~~~~~~vL~mSATp~-p~tl~~~~~g~~~~s~i~~~p~~r 551 (780)
T 1gm5_A 488 FKNLGL-VIIDEQHRFGVKQREA--------L------MNKGKMVDTLVMSATPI-PRSMALAFYGDLDVTVIDEMPPGR 551 (780)
T ss_dssp CSCCCE-EEEESCCCC-----CC--------C------CSSSSCCCEEEEESSCC-CHHHHHHHTCCSSCEEECCCCSSC
T ss_pred ccCCce-EEecccchhhHHHHHH--------H------HHhCCCCCEEEEeCCCC-HHHHHHHHhCCcceeeeeccCCCC
Confidence 357789 9999999987543321 1 12245789999999953 344443332221111111011111
Q ss_pred cccceeEEEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeEEEeCCh--------hHHHHHHHHHHH
Q psy3103 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATR--------KGVEHTCTILRQ 190 (217)
Q Consensus 129 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sR--------k~~e~~A~~l~~ 190 (217)
. ++...+ .+. ... ...+..+...+..+.+++|||++. +.++.++..+.+
T Consensus 552 ~-~i~~~~--~~~----~~~------~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~ 608 (780)
T 1gm5_A 552 K-EVQTML--VPM----DRV------NEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSK 608 (780)
T ss_dssp C-CCEECC--CCS----STH------HHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGG
T ss_pred c-ceEEEE--ecc----chH------HHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHh
Confidence 1 222211 111 100 112233344556788999999965 456777777765
No 67
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.46 E-value=0.00017 Score=64.90 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=32.9
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCH
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNI 105 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~ 105 (217)
..++++++ ||+||+|.+.+ ..++.++. ...+..++++||||.++.
T Consensus 221 ~~~~~~~l-iIiDE~H~~~~----~~~~~il~---------~~~~~~~~l~lSATp~~~ 265 (510)
T 2oca_A 221 EWFSQFGM-MMNDECHLATG----KSISSIIS---------GLNNCMFKFGLSGSLRDG 265 (510)
T ss_dssp GGGGGEEE-EEEETGGGCCH----HHHHHHGG---------GCTTCCEEEEEESCGGGC
T ss_pred hhhhcCCE-EEEECCcCCCc----ccHHHHHH---------hcccCcEEEEEEeCCCCC
Confidence 45778999 99999999986 23343332 225678999999999743
No 68
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.14 E-value=0.00014 Score=57.38 Aligned_cols=52 Identities=8% Similarity=0.128 Sum_probs=25.0
Q ss_pred HHHhhhhhHhhhhhhhcCCC-chhHHHHHHHH-HHhHHH---hhcCCCCceEEEEecc
Q psy3103 49 EQLFRSGYLMILVHLLGEES-RGPVLEAVVCR-MRTVQK---SQRASQPIRFVAVSAT 101 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~~~-RG~~lE~ll~R-L~~l~~---~~~~~~~~riv~LSAT 101 (217)
+.++.+ ||+||+|.+.+.. ....+..++.+ ++.... .....+.+++++||||
T Consensus 160 ~~~~~~-iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 160 LSDFSL-IIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp GGGCSE-EEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred hhcccE-EEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 567889 9999999998642 22222222221 111100 0012368999999998
No 69
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.03 E-value=9.4e-05 Score=61.63 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=34.7
Q ss_pred HHHHHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHH
Q psy3103 47 IIEQLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIY 106 (217)
Q Consensus 47 ~~l~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~ 106 (217)
..++++++ ||+||+|.+.+ ..++.++.+ .....++++||||.+|..
T Consensus 221 ~~~~~~~~-vIiDEaH~~~~----~~~~~il~~---------~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 221 EWFSQFGM-MMNDECHLATG----KSISSIISG---------LNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp GGGGGEEE-EEEETGGGCCH----HHHHHHTTT---------CTTCCEEEEECSSCCTTS
T ss_pred HHHhhCCE-EEEECCccCCc----ccHHHHHHH---------hhcCCeEEEEeCCCCCcc
Confidence 35778999 99999999984 345544443 245799999999998654
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=96.67 E-value=0.013 Score=52.15 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=31.3
Q ss_pred hcCCCCeEEEeCChhHHHHHHHHHHHhc--c-----ccCCHHHHHHHHHHHh
Q psy3103 165 YSDNKPTLIFCATRKGVEHTCTILRQEM--S-----IQTSPEVREIVDKCMS 209 (217)
Q Consensus 165 ~~~~~~~LVF~~sRk~~e~~A~~l~~~~--~-----~~l~~~e~~~l~~~~~ 209 (217)
...+.++||||+++..++.++..+.+.. + ...+..+++++-+..+
T Consensus 338 ~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~ 389 (500)
T 1z63_A 338 LDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQ 389 (500)
T ss_dssp HTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHH
T ss_pred HccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhc
Confidence 3568899999999999999999998652 1 1234556655444433
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=96.11 E-value=0.0075 Score=59.34 Aligned_cols=24 Identities=0% Similarity=0.047 Sum_probs=21.2
Q ss_pred CCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 168 NKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 168 ~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
+.++||||+|+..|..++..+.+.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~ 560 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRL 560 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhh
Confidence 457999999999999999998765
No 72
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=95.85 E-value=0.0092 Score=58.28 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.0
Q ss_pred cCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 166 SDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 166 ~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..+.++||||++++.++.++..|...
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~ 526 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLRER 526 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHH
Confidence 35789999999999999999999853
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=95.67 E-value=0.026 Score=53.55 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=51.8
Q ss_pred ceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCcccc-ceeEEEeecCCCCCchhHHHHHhhHHHHH-HHHHhcCCC
Q psy3103 93 IRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVK-LTKIVRGFPTKPSQSTFQFEMMLSYKLKS-IIMQYSDNK 169 (217)
Q Consensus 93 ~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 169 (217)
.++.|||+|.+. .++|.+.++.+ + +..+..+|.. ......-+.. ..-. ...+.. +......+.
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~l~----v-v~IPtnkp~~R~d~~d~vy~t----~~eK-----~~al~~~I~~~~~~gq 475 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYGME----V-VVIPTHKPMIRKDHDDLVFRT----QKEK-----YEKIVEEIEKRYKKGQ 475 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSCCC----E-EECCCSSCCCCEECCCEEESS----HHHH-----HHHHHHHHHHHHHHTC
T ss_pred hHHeEECCCCchHHHHHHHHhCCe----E-EEECCCCCcceeecCcEEEec----HHHH-----HHHHHHHHHHHhhCCC
Confidence 369999999985 56688877764 2 3335556632 2221111111 1110 112222 223334688
Q ss_pred CeEEEeCChhHHHHHHHHHHHhc
Q psy3103 170 PTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 170 ~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
|+||||+|++.|+.++..|.+..
T Consensus 476 pVLVFt~S~e~sE~Ls~~L~~~G 498 (822)
T 3jux_A 476 PVLVGTTSIEKSELLSSMLKKKG 498 (822)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTT
T ss_pred CEEEEECCHHHHHHHHHHHHHCC
Confidence 99999999999999999998653
No 74
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.40 E-value=0.004 Score=50.63 Aligned_cols=43 Identities=21% Similarity=0.103 Sum_probs=28.3
Q ss_pred HHhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHH
Q psy3103 50 QLFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYD 107 (217)
Q Consensus 50 ~~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~ 107 (217)
..+.+ ||+||+|.+.+.. ++.++. . -+..++++||||..+.+.
T Consensus 191 ~~~~l-lIiDEaH~l~~~~----~~~i~~----~------~~~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 191 NRFML-LIFDEVHHLPAES----YVQIAQ----M------SIAPFRLGLTATFEREDG 233 (237)
T ss_dssp TTCSE-EEEECSSCCCTTT----HHHHHH----T------CCCSEEEEEEESCC----
T ss_pred ccCCE-EEEECCccCCChH----HHHHHH----h------ccCCEEEEEecCCCCCCC
Confidence 45899 9999999998742 222222 1 246789999999886553
No 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.26 E-value=0.049 Score=41.18 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 158 LKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 158 ~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
+..++... .+.++||||++++.|+.++..|...
T Consensus 26 L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~ 58 (163)
T 2hjv_A 26 LKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDL 58 (163)
T ss_dssp HHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHc
Confidence 33344433 4679999999999999999999865
No 76
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=94.88 E-value=0.038 Score=42.98 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 158 LKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 158 ~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
+..++.....+.++||||++++.|+.++..|...
T Consensus 36 L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~ 69 (185)
T 2jgn_A 36 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE 69 (185)
T ss_dssp HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 4445555446789999999999999999999765
No 77
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.70 E-value=0.098 Score=41.46 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 158 LKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 158 ~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
+..++.. ..++++||||+|++.++.++..+....
T Consensus 22 l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~ 55 (212)
T 3eaq_A 22 LSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLG 55 (212)
T ss_dssp HHHHHHH-HCCSCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 3444443 347899999999999999999997653
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=94.60 E-value=0.079 Score=40.51 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 158 LKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 158 ~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
+..++... .+.++||||++++.|+.++..|...
T Consensus 22 L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~ 54 (172)
T 1t5i_A 22 LFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQ 54 (172)
T ss_dssp HHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhc
Confidence 33444433 4679999999999999999999864
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=93.68 E-value=0.16 Score=38.35 Aligned_cols=33 Identities=33% Similarity=0.535 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 158 LKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 158 ~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
+..++... .++++||||+|++.|+.++..|...
T Consensus 21 l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~ 53 (165)
T 1fuk_A 21 LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRND 53 (165)
T ss_dssp HHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHc
Confidence 34444443 4679999999999999999999864
No 80
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=93.64 E-value=0.29 Score=46.98 Aligned_cols=85 Identities=11% Similarity=0.102 Sum_probs=52.8
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeE-EEeecCCCCCchhHHHHHhhHHHHHHH-HHhcCCCC
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKI-VRGFPTKPSQSTFQFEMMLSYKLKSII-MQYSDNKP 170 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 170 (217)
++.|||+|... .++|.+.++.+ + +..+..+|+.-.-. ..-+.. .... ...+...+ +....+.|
T Consensus 378 kl~GmTGTa~te~~ef~~iY~l~----v-v~IPtn~p~~R~d~~d~v~~~----~~~K-----~~al~~~i~~~~~~gqp 443 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYKLD----T-VVVPTNRPMIRKDLPDLVYMT----EAEK-----IQAIIEDIKERTAKGQP 443 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHCCE----E-EECCCSSCCCCEECCCEEESS----HHHH-----HHHHHHHHHHHHTTTCC
T ss_pred hhhcCCCCchhHHHHHHHHhCCc----E-EEcCCCCCceeecCCcEEEeC----HHHH-----HHHHHHHHHHHhcCCCC
Confidence 57899999985 66788888765 2 34466676542211 001111 1110 12233333 23456889
Q ss_pred eEEEeCChhHHHHHHHHHHHhc
Q psy3103 171 TLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 171 ~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
+||||+|+..+|.++..|.+..
T Consensus 444 vLVft~sie~se~Ls~~L~~~g 465 (853)
T 2fsf_A 444 VLVGTISIEKSELVSNELTKAG 465 (853)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT
T ss_pred EEEEECcHHHHHHHHHHHHHCC
Confidence 9999999999999999998764
No 81
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=93.62 E-value=0.12 Score=49.20 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=23.2
Q ss_pred cCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 166 SDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 166 ~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
..+.++||||..+..+..++..+....
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~~~g 596 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLSIKG 596 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHHHT
T ss_pred hCCCeEEEEechHHHHHHHHHHHHhCC
Confidence 457899999999999999999987553
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=93.37 E-value=0.21 Score=38.04 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 167 DNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 167 ~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.++++||||++++.|+.++..|...
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~ 57 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD 57 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc
Confidence 4678999999999999999999865
No 83
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=92.93 E-value=0.36 Score=46.64 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=51.9
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeE-EEeecCCCCCchhHHHHHhhHHHHH-HHHHhcCCCC
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKI-VRGFPTKPSQSTFQFEMMLSYKLKS-IIMQYSDNKP 170 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 170 (217)
++.|||+|... ..+|.+.++.+ + +..+..+|+.-.-+ ..-+.. ..-. ...+.. +.+....+.|
T Consensus 397 kL~GMTGTa~te~~Ef~~iY~l~----v-v~IPtn~p~~R~d~~d~v~~t----~~~K-----~~al~~~i~~~~~~gqp 462 (922)
T 1nkt_A 397 KLAGMTGTAQTEAAELHEIYKLG----V-VSIPTNMPMIREDQSDLIYKT----EEAK-----YIAVVDDVAERYAKGQP 462 (922)
T ss_dssp EEEEEESCCGGGHHHHHHHHCCE----E-EECCCSSCCCCEECCCEEESC----HHHH-----HHHHHHHHHHHHHTTCC
T ss_pred hhhccccCchhHHHHHHHHhCCC----e-EEeCCCCCcccccCCcEEEeC----HHHH-----HHHHHHHHHHHHhcCCc
Confidence 57899999985 56788888765 2 33456666432111 001111 0000 112222 2233456889
Q ss_pred eEEEeCChhHHHHHHHHHHHhc
Q psy3103 171 TLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 171 ~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
+||||+|+..+|.++..|.+..
T Consensus 463 vLVft~Sie~sE~Ls~~L~~~G 484 (922)
T 1nkt_A 463 VLIGTTSVERSEYLSRQFTKRR 484 (922)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT
T ss_pred EEEEECCHHHHHHHHHHHHHCC
Confidence 9999999999999999998764
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=92.48 E-value=0.21 Score=41.99 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 158 LKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 158 ~~~~~~~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
+..++... .++++||||+|++.++.++..|...
T Consensus 19 L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~ 51 (300)
T 3i32_A 19 LSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRL 51 (300)
T ss_dssp HHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhC
Confidence 44444444 3789999999999999999999764
No 85
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=92.31 E-value=0.38 Score=46.15 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=49.8
Q ss_pred eEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccce-eEEEeecCCCCCchhHHHHHhhHHHHHHH-HHhcCCCC
Q psy3103 94 RFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLT-KIVRGFPTKPSQSTFQFEMMLSYKLKSII-MQYSDNKP 170 (217)
Q Consensus 94 riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 170 (217)
++.|+++|... ..+|.+.++.+ + +..+..+|+.-. ....-+.. .... ...+...+ +....+.|
T Consensus 369 kl~GmTGTa~te~~e~~~iY~l~----v-v~IPtn~p~~r~d~~d~v~~~----~~~K-----~~al~~~i~~~~~~~~p 434 (844)
T 1tf5_A 369 KLAGMTGTAKTEEEEFRNIYNMQ----V-VTIPTNRPVVRDDRPDLIYRT----MEGK-----FKAVAEDVAQRYMTGQP 434 (844)
T ss_dssp EEEEEESCCGGGHHHHHHHHCCC----E-EECCCSSCCCCEECCCEEESS----HHHH-----HHHHHHHHHHHHHHTCC
T ss_pred hhccCCcccchhHHHHHHHhCCc----e-EEecCCCCcccccCCcEEEeC----HHHH-----HHHHHHHHHHHHhcCCc
Confidence 57899999974 56687777764 2 223555554311 10001110 1110 11222222 23345789
Q ss_pred eEEEeCChhHHHHHHHHHHHhc
Q psy3103 171 TLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 171 ~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
+||||+|+..|+.++..|.+..
T Consensus 435 vLVft~s~~~se~Ls~~L~~~g 456 (844)
T 1tf5_A 435 VLVGTVAVETSELISKLLKNKG 456 (844)
T ss_dssp EEEEESCHHHHHHHHHHHHTTT
T ss_pred EEEEECCHHHHHHHHHHHHHCC
Confidence 9999999999999999998653
No 86
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.35 E-value=0.35 Score=37.62 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.8
Q ss_pred CCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 168 NKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 168 ~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
+.++||||++++.|+.++..|...
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~ 77 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK 77 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc
Confidence 568999999999999999999765
No 87
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=89.30 E-value=2.7 Score=38.82 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=48.7
Q ss_pred eEEEEeccCCCHHHHHhhhcCCCCCeeeecCCCCccccceeEEE-eecCCCCCchhHHHHHhhHHHHHHHHHhcCCCCeE
Q psy3103 94 RFVAVSATIPNIYDIALWLGFGKPTVYAQIDDSFRPVKLTKIVR-GFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTL 172 (217)
Q Consensus 94 riv~LSATl~n~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 172 (217)
.+|++|||+...+.+.+.||.+ .....+.+.+.+-.....+. ..+......+......+...+..++.. ..+.++
T Consensus 377 ~~il~SaTL~p~~~~~~~lGl~--~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~--~~g~~l 452 (620)
T 4a15_A 377 KTIHMSGTLDPFDFYSDITGFE--IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK--VKKNTI 452 (620)
T ss_dssp EEEEEESSCCSHHHHHHHHCCC--CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH--HCSCEE
T ss_pred eEEEEccCCCcHHHHHHHhCCC--ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh--CCCCEE
Confidence 4689999999999999999986 22334443332222212211 111110001110111112223333332 256799
Q ss_pred EEeCChhHHHHHHHHHH
Q psy3103 173 IFCATRKGVEHTCTILR 189 (217)
Q Consensus 173 VF~~sRk~~e~~A~~l~ 189 (217)
||++|.+.-+.++..+.
T Consensus 453 vlF~Sy~~l~~v~~~l~ 469 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVS 469 (620)
T ss_dssp EEESCHHHHHHHTSSCC
T ss_pred EEeCCHHHHHHHHHHHH
Confidence 99999999998887765
No 88
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=88.73 E-value=0.18 Score=46.82 Aligned_cols=43 Identities=7% Similarity=0.043 Sum_probs=30.2
Q ss_pred CCCCeEEEeCChhHHHHHHHHHHHhc------cccCCHHHHHHHHHHHh
Q psy3103 167 DNKPTLIFCATRKGVEHTCTILRQEM------SIQTSPEVREIVDKCMS 209 (217)
Q Consensus 167 ~~~~~LVF~~sRk~~e~~A~~l~~~~------~~~l~~~e~~~l~~~~~ 209 (217)
.+.++||||+.+..++.++..+.... ....+..+++++-+..+
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~ 463 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFN 463 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhc
Confidence 47899999999999999999887553 22245666655444443
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=88.59 E-value=2.4 Score=38.39 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=48.9
Q ss_pred ceEEEEeccCCCHHHHHhhhcCCCCCe----eeecCCCCccccceeEEE-eecCCCCCchhHHHHHhhHHHHHHHHHhcC
Q psy3103 93 IRFVAVSATIPNIYDIALWLGFGKPTV----YAQIDDSFRPVKLTKIVR-GFPTKPSQSTFQFEMMLSYKLKSIIMQYSD 167 (217)
Q Consensus 93 ~riv~LSATl~n~~~~a~wL~~~~~~~----~~~~~~~~Rp~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (217)
..+|++|||+...+.+.+.||.+.+.. ...+.+.+ +-....++. ..+......+......+...+..++. ..
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~--~~ 392 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYF--QA 392 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHH--HC
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHH--hC
Confidence 688999999999988999999863221 11233333 211111211 12221111111111112222233322 23
Q ss_pred CCCeEEEeCChhHHHHHHHH
Q psy3103 168 NKPTLIFCATRKGVEHTCTI 187 (217)
Q Consensus 168 ~~~~LVF~~sRk~~e~~A~~ 187 (217)
.+.++||.+|.+..+.++..
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~ 412 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSR 412 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTT
T ss_pred CCCEEEEecCHHHHHHHHHh
Confidence 56899999999999998863
No 90
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=85.58 E-value=0.16 Score=38.47 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=21.9
Q ss_pred CCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 167 DNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 167 ~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+.++||||++++.|+.++..|.+.
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~ 53 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA 53 (170)
Confidence 4678999999999999999998654
No 91
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=83.33 E-value=3.7 Score=39.90 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=53.9
Q ss_pred ceEEEEeccCCC-HHHHHhhhcCCCCCeeeecCCCCccccceeE-EEeecCCCCCchhHHHHHhhHHHHHHHHHhcCCCC
Q psy3103 93 IRFVAVSATIPN-IYDIALWLGFGKPTVYAQIDDSFRPVKLTKI-VRGFPTKPSQSTFQFEMMLSYKLKSIIMQYSDNKP 170 (217)
Q Consensus 93 ~riv~LSATl~n-~~~~a~wL~~~~~~~~~~~~~~~Rp~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (217)
.++.|||.|... ..+|.+.++.+ + +..|..+|+.-.-. -.-|.. ..-.+ ..-+..+.+....|.|
T Consensus 379 ~kLsGMTGTA~tE~~Ef~~iY~l~----V-v~IPTn~p~~R~D~~d~vy~t----~~~K~----~AIv~eI~~~~~~GqP 445 (997)
T 2ipc_A 379 EKRAGMTGTAKTEEKEFQEIYGMD----V-VVVPTNRPVIRKDFPDVVYRT----EKGKF----YAVVEEIAEKYERGQP 445 (997)
T ss_dssp SEEEEEESSCGGGHHHHHHHHCCC----E-EECCCSSCCCCEEEEEEEESS----HHHHH----HHHHHHHHHHHHHTCC
T ss_pred hHheecCCCchHHHHHHHHHhCCC----E-EEcCCCCCcccccCCCeEEcC----HHHHH----HHHHHHHHHHHHCCCC
Confidence 368999999974 66788888876 2 44567777632211 011211 11111 1123344445577999
Q ss_pred eEEEeCChhHHHHHHHHHH
Q psy3103 171 TLIFCATRKGVEHTCTILR 189 (217)
Q Consensus 171 ~LVF~~sRk~~e~~A~~l~ 189 (217)
+||+|.|-..+|.++..|.
T Consensus 446 VLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 446 VLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp EEEECSSHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHh
Confidence 9999999999999999998
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=69.23 E-value=21 Score=28.97 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=23.3
Q ss_pred cCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 166 SDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 166 ~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
..+.++||||+++..++.++..+.+.
T Consensus 110 ~~~~kvlIFs~~~~~~~~l~~~L~~~ 135 (271)
T 1z5z_A 110 DEGDKIAIFTQFVDMGKIIRNIIEKE 135 (271)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEeccHHHHHHHHHHHHHh
Confidence 46889999999999999999999864
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=54.89 E-value=2.3 Score=39.26 Aligned_cols=32 Identities=6% Similarity=-0.203 Sum_probs=20.6
Q ss_pred eecccCCChhHHHHHHH------HhhhhhHhhhhhhhcC
Q psy3103 34 GYHHAGMSPEDRTIIEQ------LFRSGYLMILVHLLGE 66 (217)
Q Consensus 34 ~~~h~~l~~~~~~~~l~------~v~l~vViDEiH~l~~ 66 (217)
+.||..+.+.-+..++. .-.. |||||+|.|.|
T Consensus 181 ~ny~ylld~~~r~~~~~~~~i~p~~~i-vI~DEAHNL~d 218 (620)
T 4a15_A 181 APYAYFLNRSVAEKFLSHWGVSRNQIV-IILDEAHNLPD 218 (620)
T ss_dssp EEHHHHTCHHHHHHHHHHHTCCGGGEE-EEETTGGGHHH
T ss_pred eCchhhcCHHHHHHHHHhhccCcCCeE-EEEECCCchHH
Confidence 34555566654444333 3347 99999999986
No 94
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=50.18 E-value=9.9 Score=35.18 Aligned_cols=33 Identities=33% Similarity=0.654 Sum_probs=27.8
Q ss_pred hcChHHHHHhhhhheecccCCChhHHHHHHHHh
Q psy3103 20 IMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLF 52 (217)
Q Consensus 20 ~~~~~~~~~~~~~~~~~h~~l~~~~~~~~l~~v 52 (217)
..++.|++++..|+.+||++++++++..+++.+
T Consensus 286 ~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 286 EMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp HHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred cccHHHHHHHhcCeEEecCCCCHHHHHHHHHHH
Confidence 345789999999999999999999998777643
No 95
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=48.75 E-value=1.9 Score=38.93 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=20.3
Q ss_pred CCCCeEEEeCChhHHHHHHHHHHH
Q psy3103 167 DNKPTLIFCATRKGVEHTCTILRQ 190 (217)
Q Consensus 167 ~~~~~LVF~~sRk~~e~~A~~l~~ 190 (217)
..+.+|||++|.+..+.++..+.+
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~ 406 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG 406 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc
Confidence 356899999999999999987754
No 96
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=47.41 E-value=12 Score=34.77 Aligned_cols=32 Identities=31% Similarity=0.778 Sum_probs=27.0
Q ss_pred cChHHHHHhhhhheecccCCChhHHHHHHHHh
Q psy3103 21 MDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLF 52 (217)
Q Consensus 21 ~~~~~~~~~~~~~~~~h~~l~~~~~~~~l~~v 52 (217)
.+..|++++..|+.+||++++++++...++.+
T Consensus 285 ~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 285 TNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred chHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 34569999999999999999999998777644
No 97
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=45.54 E-value=52 Score=29.35 Aligned_cols=33 Identities=9% Similarity=-0.263 Sum_probs=19.8
Q ss_pred hheecccCCChhHHHHH--------HHHhhhhhHhhhhhhhc
Q psy3103 32 SIGYHHAGMSPEDRTII--------EQLFRSGYLMILVHLLG 65 (217)
Q Consensus 32 ~~~~~h~~l~~~~~~~~--------l~~v~l~vViDEiH~l~ 65 (217)
=|+.||..+.+..+..+ +..... +||||+|.+.
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~-vIiDEAHnl~ 188 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYL-IVIDEAHNLL 188 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEE-EEETTGGGGG
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCE-EEEEccccHH
Confidence 34555555555443332 345677 8888888883
No 98
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=42.43 E-value=5.5 Score=31.10 Aligned_cols=53 Identities=9% Similarity=-0.100 Sum_probs=29.1
Q ss_pred hhHHHHHH--HH--hhhhhHhhhhhhhcCCCchhHHHH--HHHHHHhHHHhhcCCCCceEEEEecc
Q psy3103 42 PEDRTIIE--QL--FRSGYLMILVHLLGEESRGPVLEA--VVCRMRTVQKSQRASQPIRFVAVSAT 101 (217)
Q Consensus 42 ~~~~~~~l--~~--v~l~vViDEiH~l~~~~RG~~lE~--ll~RL~~l~~~~~~~~~~riv~LSAT 101 (217)
+++|..++ .. -.+ |||||+|.+..+ ++...|. +++- +. .......++|.++-.
T Consensus 74 ~~~~~~~~~~~~~~~~v-liIDEAq~l~~~-~~~~~e~~rll~~---l~--~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 74 AHDMYEWIKKPENIGSI-VIVDEAQDVWPA-RSAGSKIPENVQW---LN--THRHQGIDIFVLTQG 132 (199)
T ss_dssp GGGHHHHTTSGGGTTCE-EEETTGGGTSBC-CCTTCCCCHHHHG---GG--GTTTTTCEEEEEESC
T ss_pred HHHHHHHhhccccCceE-EEEEChhhhccC-ccccchhHHHHHH---HH--hcCcCCeEEEEECCC
Confidence 35677664 33 557 999999999532 2111111 2221 21 223456788888776
No 99
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=41.47 E-value=11 Score=31.85 Aligned_cols=45 Identities=9% Similarity=0.030 Sum_probs=28.7
Q ss_pred hhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCCCHHH
Q psy3103 53 RSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYD 107 (217)
Q Consensus 53 ~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~n~~~ 107 (217)
-+ |++||+|.+.+ .. ++-.+-.+. .....+.-+|+.++|+.++..
T Consensus 134 ~i-i~lDE~d~l~~--q~-----~L~~l~~~~--~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 134 TL-ILIQNPENLLS--EK-----ILQYFEKWI--SSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp EE-EEEECCSSSCC--TH-----HHHHHHHHH--HCSSCCEEEEEECCSSCCCHH
T ss_pred eE-EEEecHHHhhc--ch-----HHHHHHhcc--cccCCcEEEEEEecCcccchh
Confidence 36 99999999993 22 222221221 223556788999999988763
No 100
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=40.16 E-value=16 Score=33.68 Aligned_cols=31 Identities=39% Similarity=0.700 Sum_probs=26.7
Q ss_pred ChHHHHHhhhhheecccCCChhHHHHHHHHh
Q psy3103 22 DNKLKDMLRSSIGYHHAGMSPEDRTIIEQLF 52 (217)
Q Consensus 22 ~~~~~~~~~~~~~~~h~~l~~~~~~~~l~~v 52 (217)
++.|++++..|+.+||++++++++..+++.+
T Consensus 304 ~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f 334 (715)
T 2va8_A 304 KELLKSLISKGVAYHHAGLSKALRDLIEEGF 334 (715)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHhcCEEEECCCCCHHHHHHHHHHH
Confidence 4678999999999999999999998777743
No 101
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=33.93 E-value=84 Score=19.93 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=21.2
Q ss_pred cCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 166 SDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 166 ~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.++.+++++|.+-..+...|..|.+.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~ 64 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEM 64 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHc
Confidence 56789999999988888888888754
No 102
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=32.72 E-value=1.3e+02 Score=27.48 Aligned_cols=39 Identities=18% Similarity=-0.004 Sum_probs=26.1
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccC
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATI 102 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl 102 (217)
.+.+ ||+||+|.+.+.. ......+.++ ...+.++||||-
T Consensus 192 ~~~~-vI~DEaH~ikn~~--~~~~~al~~l----------~~~~rl~LTgTP 230 (644)
T 1z3i_X 192 KVGL-VICDEGHRLKNSD--NQTYLALNSM----------NAQRRVLISGTP 230 (644)
T ss_dssp CCCE-EEETTGGGCCTTC--HHHHHHHHHH----------CCSEEEEECSSC
T ss_pred CccE-EEEECceecCChh--hHHHHHHHhc----------ccCcEEEEecCc
Confidence 4568 9999999998742 3333333332 345779999994
No 103
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=31.64 E-value=37 Score=27.73 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=13.8
Q ss_pred HHHhhhhhHhhhhhhhcC
Q psy3103 49 EQLFRSGYLMILVHLLGE 66 (217)
Q Consensus 49 l~~v~l~vViDEiH~l~~ 66 (217)
+.+..+ +++||+|.+.+
T Consensus 96 ~~~~~v-L~iDEi~~l~~ 112 (324)
T 1l8q_A 96 YKSVDL-LLLDDVQFLSG 112 (324)
T ss_dssp HHTCSE-EEEECGGGGTT
T ss_pred hcCCCE-EEEcCcccccC
Confidence 344678 99999999986
No 104
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=29.53 E-value=32 Score=24.86 Aligned_cols=13 Identities=8% Similarity=0.008 Sum_probs=11.1
Q ss_pred hhhhHhhhhhhhcC
Q psy3103 53 RSGYLMILVHLLGE 66 (217)
Q Consensus 53 ~l~vViDEiH~l~~ 66 (217)
.+ +|+||+|.+..
T Consensus 117 ~v-l~iDe~~~l~~ 129 (187)
T 2p65_A 117 VV-MFIDEIHTVVG 129 (187)
T ss_dssp EE-EEETTGGGGSS
T ss_pred eE-EEEeCHHHhcc
Confidence 47 99999999973
No 105
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=28.06 E-value=18 Score=28.80 Aligned_cols=14 Identities=7% Similarity=0.002 Sum_probs=11.4
Q ss_pred hhhhhHhhhhhhhcC
Q psy3103 52 FRSGYLMILVHLLGE 66 (217)
Q Consensus 52 v~l~vViDEiH~l~~ 66 (217)
-.+ +++||+|.+.+
T Consensus 125 ~~v-l~iDEid~l~~ 138 (272)
T 1d2n_A 125 LSC-VVVDDIERLLD 138 (272)
T ss_dssp EEE-EEECCHHHHTT
T ss_pred CcE-EEEEChhhhhc
Confidence 457 99999999943
No 106
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=27.89 E-value=30 Score=24.96 Aligned_cols=12 Identities=8% Similarity=0.039 Sum_probs=10.8
Q ss_pred hhhHhhhhhhhcC
Q psy3103 54 SGYLMILVHLLGE 66 (217)
Q Consensus 54 l~vViDEiH~l~~ 66 (217)
+ +|+||+|.+.+
T Consensus 118 v-l~iDe~~~l~~ 129 (195)
T 1jbk_A 118 I-LFIDELHTMVG 129 (195)
T ss_dssp E-EEEETGGGGTT
T ss_pred E-EEEeCHHHHhc
Confidence 7 99999999974
No 107
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.35 E-value=1.4e+02 Score=19.91 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=32.8
Q ss_pred HHHHHHHh-cCCCCeEEEeCCh--hHHHHHHHHHHHhc---ccc--CCHHHH-HHHHHHHhhc
Q psy3103 158 LKSIIMQY-SDNKPTLIFCATR--KGVEHTCTILRQEM---SIQ--TSPEVR-EIVDKCMSNM 211 (217)
Q Consensus 158 ~~~~~~~~-~~~~~~LVF~~sR--k~~e~~A~~l~~~~---~~~--l~~~e~-~~l~~~~~~i 211 (217)
+..+++.. .+++|.+||++.. .++........+.. +.+ ..|+|. +.+.++++..
T Consensus 40 irdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflkta 102 (112)
T 2lnd_A 40 IRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKTA 102 (112)
T ss_dssp HHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHhc
Confidence 45666665 4578999999974 45555555555554 221 356655 6666776643
No 108
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=26.78 E-value=25 Score=26.37 Aligned_cols=37 Identities=19% Similarity=0.469 Sum_probs=21.8
Q ss_pred hhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEec
Q psy3103 53 RSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSA 100 (217)
Q Consensus 53 ~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSA 100 (217)
.+ +|+||+|.+.. ..++.++.-+ ...+.+..+|+.+.
T Consensus 128 ~v-lviDe~~~l~~----~~~~~l~~~l------~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 128 KV-YLIDEVHMLSR----HSFNALLKTL------EEPPEHVKFLLATT 164 (250)
T ss_dssp EE-EEEETGGGSCH----HHHHHHHHHH------HSCCTTEEEEEEES
T ss_pred eE-EEEECcccccH----HHHHHHHHHH------hcCCCceEEEEEeC
Confidence 47 99999999863 2334443332 22245666666654
No 109
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.77 E-value=29 Score=30.80 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=26.1
Q ss_pred hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEeccCC
Q psy3103 52 FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIP 103 (217)
Q Consensus 52 v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSATl~ 103 (217)
-.+ |+|||+|.+....+|. +..+..-+. ..+..+|+.+++..
T Consensus 149 ~~v-liIDEid~l~~~~~~~-l~~L~~~l~--------~~~~~iIli~~~~~ 190 (516)
T 1sxj_A 149 HFV-IIMDEVDGMSGGDRGG-VGQLAQFCR--------KTSTPLILICNERN 190 (516)
T ss_dssp SEE-EEECSGGGCCTTSTTH-HHHHHHHHH--------HCSSCEEEEESCTT
T ss_pred CeE-EEEECCCccchhhHHH-HHHHHHHHH--------hcCCCEEEEEcCCC
Confidence 357 8999999998755543 333333221 24566888877653
No 110
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=26.77 E-value=42 Score=28.38 Aligned_cols=13 Identities=8% Similarity=0.031 Sum_probs=11.3
Q ss_pred hhhhHhhhhhhhcC
Q psy3103 53 RSGYLMILVHLLGE 66 (217)
Q Consensus 53 ~l~vViDEiH~l~~ 66 (217)
.+ +|+||+|.+.+
T Consensus 264 ~~-i~iDEa~~~~~ 276 (392)
T 4ag6_A 264 TV-LVVDEAWMLVD 276 (392)
T ss_dssp CE-EEETTGGGGCC
T ss_pred EE-EEEecHHHHhC
Confidence 46 99999999986
No 111
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=25.95 E-value=1.1e+02 Score=20.36 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=23.3
Q ss_pred HHhcCCCCeEEEeCChhHHHHHHHHHHHhc
Q psy3103 163 MQYSDNKPTLIFCATRKGVEHTCTILRQEM 192 (217)
Q Consensus 163 ~~~~~~~~~LVF~~sRk~~e~~A~~l~~~~ 192 (217)
..+.++.+++++|.+-..+...+..|....
T Consensus 53 ~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G 82 (108)
T 1gmx_A 53 RDNDFDTPVMVMCYHGNSSKGAAQYLLQQG 82 (108)
T ss_dssp HHSCTTSCEEEECSSSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCEEEEcCCCchHHHHHHHHHHcC
Confidence 345678899999999777888888887653
No 112
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=25.31 E-value=18 Score=33.03 Aligned_cols=34 Identities=6% Similarity=0.166 Sum_probs=22.6
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEE
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAV 98 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~L 98 (217)
.+++ +||||++++.. ..++.++.. .+...|+|++
T Consensus 262 ~~d~-lIIDEAsml~~----~~~~~Ll~~---------l~~~~~liLv 295 (608)
T 1w36_D 262 HLDV-LVVDEASMIDL----PMMSRLIDA---------LPDHARVIFL 295 (608)
T ss_dssp SCSE-EEECSGGGCBH----HHHHHHHHT---------CCTTCEEEEE
T ss_pred CCCE-EEEechhhCCH----HHHHHHHHh---------CCCCCEEEEE
Confidence 5789 99999998762 233444332 2567788876
No 113
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=25.06 E-value=45 Score=26.71 Aligned_cols=20 Identities=5% Similarity=-0.182 Sum_probs=13.9
Q ss_pred HHHHHHh--hhhhHhhhhhhhcC
Q psy3103 46 TIIEQLF--RSGYLMILVHLLGE 66 (217)
Q Consensus 46 ~~~l~~v--~l~vViDEiH~l~~ 66 (217)
...+... .+ ++|||+|.+..
T Consensus 123 ~~~~~~~~~~v-l~iDEid~l~~ 144 (309)
T 3syl_A 123 KEVLKRAMGGV-LFIDEAYYLYR 144 (309)
T ss_dssp HHHHHHHTTSE-EEEETGGGSCC
T ss_pred HHHHHhcCCCE-EEEEChhhhcc
Confidence 4444433 47 99999999964
No 114
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=23.91 E-value=67 Score=27.84 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=23.6
Q ss_pred HhhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEe
Q psy3103 51 LFRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVS 99 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LS 99 (217)
...+ ++|||+|.+.+. +. .-+.++.-+..+. ..+.++|..|
T Consensus 194 ~~~v-L~IDEi~~l~~~-~~-~q~~l~~~l~~l~-----~~~~~iIitt 234 (440)
T 2z4s_A 194 KVDI-LLIDDVQFLIGK-TG-VQTELFHTFNELH-----DSGKQIVICS 234 (440)
T ss_dssp TCSE-EEEECGGGGSSC-HH-HHHHHHHHHHHHH-----TTTCEEEEEE
T ss_pred CCCE-EEEeCcccccCC-hH-HHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 5668 999999999863 22 2233444333322 3445666544
No 115
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=23.90 E-value=37 Score=25.09 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=22.3
Q ss_pred hhhhhHhhhhhhhcCCCchhHHHHHHHHHHhHHHhhcCCCCceEEEEec
Q psy3103 52 FRSGYLMILVHLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSA 100 (217)
Q Consensus 52 v~l~vViDEiH~l~~~~RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSA 100 (217)
-.+ +|+||+|.+... ..+.+..-+ .....+.++|+.+.
T Consensus 103 ~~v-liiDe~~~l~~~----~~~~l~~~l------~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 103 FKI-IFLDEADALTAD----AQAALRRTM------EMYSKSCRFILSCN 140 (226)
T ss_dssp CEE-EEEETGGGSCHH----HHHHHHHHH------HHTTTTEEEEEEES
T ss_pred ceE-EEEeChhhcCHH----HHHHHHHHH------HhcCCCCeEEEEeC
Confidence 347 899999999752 233333322 22245677777654
No 116
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=23.24 E-value=32 Score=25.98 Aligned_cols=15 Identities=13% Similarity=0.095 Sum_probs=12.3
Q ss_pred HhhhhhHhhhhhhhcC
Q psy3103 51 LFRSGYLMILVHLLGE 66 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~ 66 (217)
+..+ |+|||+|.+..
T Consensus 76 ~~dv-viIDE~Q~~~~ 90 (184)
T 2orw_A 76 DTRG-VFIDEVQFFNP 90 (184)
T ss_dssp TEEE-EEECCGGGSCT
T ss_pred CCCE-EEEECcccCCH
Confidence 4678 99999999853
No 117
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=22.19 E-value=1.3e+02 Score=20.05 Aligned_cols=28 Identities=11% Similarity=0.297 Sum_probs=22.5
Q ss_pred HhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 164 QYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 164 ~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+.++.+++++|.+-..+...+..|...
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~ 75 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSA 75 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHT
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHc
Confidence 4566789999999987788888888755
No 118
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=22.09 E-value=88 Score=21.04 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=22.1
Q ss_pred HhcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 164 QYSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 164 ~~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
.+.++.+++++|.+-..+...+..|.+.
T Consensus 51 ~l~~~~~ivvyC~~G~rs~~aa~~L~~~ 78 (108)
T 3gk5_A 51 ILERDKKYAVICAHGNRSAAAVEFLSQL 78 (108)
T ss_dssp GSCTTSCEEEECSSSHHHHHHHHHHHTT
T ss_pred hCCCCCeEEEEcCCCcHHHHHHHHHHHc
Confidence 4456789999999988888888887654
No 119
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=21.48 E-value=34 Score=29.85 Aligned_cols=45 Identities=9% Similarity=0.202 Sum_probs=31.5
Q ss_pred HhhhhhHhhhhhhhcCCC-----chhHHHHHHHHHHhHHHhhcCCCCceEEEEec
Q psy3103 51 LFRSGYLMILVHLLGEES-----RGPVLEAVVCRMRTVQKSQRASQPIRFVAVSA 100 (217)
Q Consensus 51 ~v~l~vViDEiH~l~~~~-----RG~~lE~ll~RL~~l~~~~~~~~~~riv~LSA 100 (217)
++++ ||||+++.+.... +-..+..++..|+.+++ ..++-+|++|-
T Consensus 313 ~~~l-ivID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAk----e~~i~vi~~sq 362 (454)
T 2r6a_A 313 GLGM-IVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAR----ELEVPVIALSQ 362 (454)
T ss_dssp CCCE-EEEECGGGSCCSCC----CHHHHHHHHHHHHHHHH----HHTCCEEEEEC
T ss_pred CCCE-EEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHH----HhCCeEEEEec
Confidence 5789 9999999998542 44566777788877752 23456777764
No 120
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=20.94 E-value=77 Score=22.10 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=21.7
Q ss_pred hcCCCCeEEEeCChhHHHHHHHHHHHh
Q psy3103 165 YSDNKPTLIFCATRKGVEHTCTILRQE 191 (217)
Q Consensus 165 ~~~~~~~LVF~~sRk~~e~~A~~l~~~ 191 (217)
+.++.+++++|.+-..+...+..|.+.
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~ 105 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHA 105 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHc
Confidence 456789999999987788888887754
No 121
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=20.77 E-value=65 Score=31.43 Aligned_cols=31 Identities=39% Similarity=0.733 Sum_probs=25.5
Q ss_pred hHHHHHhhhhheecccCCChhHHHHHHHHhh
Q psy3103 23 NKLKDMLRSSIGYHHAGMSPEDRTIIEQLFR 53 (217)
Q Consensus 23 ~~~~~~~~~~~~~~h~~l~~~~~~~~l~~v~ 53 (217)
..+..++..||++||++++++.+..++..++
T Consensus 399 ~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~ 429 (1010)
T 2xgj_A 399 KHILPLLRRGIGIHHSGLLPILKEVIEILFQ 429 (1010)
T ss_dssp HHHHHHHHHTEEEESTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeeEECCCCCHHHHHHHHHHHh
Confidence 3567889999999999999998887766544
No 122
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=20.71 E-value=37 Score=28.41 Aligned_cols=12 Identities=0% Similarity=-0.175 Sum_probs=10.9
Q ss_pred hhhHhhhhhhhcC
Q psy3103 54 SGYLMILVHLLGE 66 (217)
Q Consensus 54 l~vViDEiH~l~~ 66 (217)
+ |||||+|.+.+
T Consensus 141 l-lvlDe~~~l~~ 152 (412)
T 1w5s_A 141 L-VILDEFQSMLS 152 (412)
T ss_dssp E-EEEESTHHHHS
T ss_pred E-EEEeCHHHHhh
Confidence 7 99999999976
No 123
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=20.60 E-value=68 Score=24.93 Aligned_cols=21 Identities=5% Similarity=-0.246 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhhhhHhhhhhhh
Q psy3103 43 EDRTIIEQLFRSGYLMILVHLL 64 (217)
Q Consensus 43 ~~~~~~l~~v~l~vViDEiH~l 64 (217)
.+.....+++.. |+|||+|++
T Consensus 83 ~d~~~~~~~~Dv-IlIDEaQFf 103 (195)
T 1w4r_A 83 RDVAQEALGVAV-IGIDEGQFF 103 (195)
T ss_dssp GGGHHHHHTCSE-EEESSGGGC
T ss_pred HHHHHhccCCCE-EEEEchhhh
Confidence 344445678899 999999999
Done!