RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3103
         (217 letters)



>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 202

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 6/52 (11%)

Query: 62  HLLGEESRGPVLEAVVCRMRTVQKSQRASQPIRFVAVSATIPNIYDIALWLG 113
           HLL  E RG  LE +V +MR      R ++ +R + +SAT PN+ +IA WL 
Sbjct: 148 HLLDSEKRGATLEILVTKMR------RMNKALRVIGLSATAPNVTEIAEWLD 193


>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 201

 Score = 32.6 bits (73), Expect = 0.020
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 129 PVKLTKIVRGFPTKPSQSTFQFEMMLSYKLKSIIMQY-SDNKPTLIFCATRKGVEHTCTI 187
           PV L + V    T        F      K + ++ +  ++N   L+F +TR+G E T   
Sbjct: 1   PVPLVEGVLCEGTL-ELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVK 59

Query: 188 LRQEMSIQTSPE 199
           L    +     E
Sbjct: 60  LSAITAKYVENE 71


>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
           (HCV), different isolates [TaxId: 11103]}
          Length = 138

 Score = 31.6 bits (71), Expect = 0.033
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 158 LKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEM 192
            K+I ++       LIFC ++K  +     L    
Sbjct: 25  GKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALG 59


>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
           gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 248

 Score = 30.5 bits (68), Expect = 0.11
 Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 157 KLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEMSIQTSPEVREIVDKCMSNMMDN 214
            L SI+ +       +I+  T +  E     L+ +  I      ++   +       +
Sbjct: 16  TLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEID 71



 Score = 26.7 bits (58), Expect = 2.2
 Identities = 5/39 (12%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 23 NKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILV 61
           ++ + L++       G+    +    + F  G +  L+
Sbjct: 39 EEIYESLKNKF---RIGIVTATKKGDYEKFVEGEIDHLI 74


>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
           C virus (HCV), different isolates [TaxId: 11103]}
          Length = 299

 Score = 29.5 bits (66), Expect = 0.27
 Identities = 8/46 (17%), Positives = 17/46 (36%)

Query: 145 QSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQ 190
           +        + +  K+I ++       LIFC ++K  +     L  
Sbjct: 13  EVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVA 58


>d2v89a1 g.50.1.2 (A:1414-1487) V(D)J recombination-activating
           protein 2, Rag2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 74

 Score = 26.8 bits (59), Expect = 0.57
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 168 NKPTLIFCATRKG--VEHTCTILRQEMSIQTSPE 199
           NKP +I+C+   G  V   C  L +   I  S  
Sbjct: 26  NKPAMIYCSHGDGHWVHAQCMDLEERTLIHLSEG 59


>d1ylea1 d.108.1.8 (A:1-338) Arginine N-succinyltransferase, alpha
           chain, AstA {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 338

 Score = 27.4 bits (61), Expect = 1.4
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 70  GPVLEAVVCRMRTVQKSQRAS 90
           GP L A    +R++ +S+   
Sbjct: 257 GPTLHARTSGIRSIAQSRVVP 277


>d1nsta_ c.37.1.5 (A:) Heparan sulfate
           N-deacetylase/N-sulfotransferase domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 301

 Score = 24.9 bits (53), Expect = 8.4
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 19  NIMDNKLKDMLRSSIGYHHAGMSPEDRTIIEQLFRSGYLMILVHLLGEESR 69
            +++      L  S G  +  M  + R  ++  +R  + + L  LL +  +
Sbjct: 241 QLLEGGKTKCLGKSKGRKYPEMDLDSRAFLKDYYRD-HNIELSKLLYKMGQ 290


>d2gnxa1 a.246.3.1 (A:123-294) Hypothetical protein BC048403 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 172

 Score = 24.4 bits (53), Expect = 9.6
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 141 TKPSQSTFQFEMMLSYKLKSIIMQYSDNKPTLIFCATRKGVEHTCTILRQEMSIQT 196
              +Q     E ++S  L +I+ +YS      I        +    +L   +  Q 
Sbjct: 26  ALSTQKFINTEELVST-LDTILRKYSSRFHHPILSPLESSFQLEVGVLSHLLKAQA 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 770,537
Number of extensions: 34249
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 15
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)