RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3106
(433 letters)
>gnl|CDD|238532 cd01099, PAN_AP_HGF, Subfamily of PAN/APPLE-like domains; present
in N-terminal (N) domains of plasminogen/hepatocyte
growth factor proteins, and various proteins found in
Bilateria, such as leech anti-platelet proteins.
PAN/APPLE domains fulfill diverse biological functions
by mediating protein-protein or protein-carbohydrate
interactions.
Length = 80
Score = 67.9 bits (166), Expect = 2e-14
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 30 ERAWCFDRVHGYSLLGFVKKVGTATSRTDCFEMCLGERDFICRSANYNNATGECHMSDMD 89
+ F V L+ VK T S +C CL E +F CRS NYN + EC +SD D
Sbjct: 1 LNDFKFVLVLNKILVSEVKTEITVASLEECLRKCLEETEFTCRSFNYNYKSKECILSDED 60
Query: 90 RITVAGHGAFEETKDIEYLENN 111
R++ +++Y EN
Sbjct: 61 RMS--SGVKLLYDSNVDYYENK 80
Score = 44.4 bits (105), Expect = 4e-06
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 119 LCEFKKLAGRILKTVDSVYQ--DVASIEECRELCLNS-PYRCHSYDYGDTGDLVCRLSHH 175
L +FK + V V VAS+EEC CL + C S++Y + C LS
Sbjct: 1 LNDFKFVLVLNKILVSEVKTEITVASLEECLRKCLEETEFTCRSFNY-NYKSKECILSDE 59
Query: 176 SRATLVGIQEYRNTV 190
R + Y + V
Sbjct: 60 DRMSSGVKLLYDSNV 74
>gnl|CDD|215662 pfam00024, PAN_1, PAN domain. The PAN domain contains a conserved
core of three disulphide bridges. In some members of the
family there is an additional fourth disulphide bridge
the links the N and C termini of the domain. The domain
is found in diverse proteins, in some they mediate
protein-protein interactions, in others they mediate
protein-carbohydrate interactions.
Length = 78
Score = 59.9 bits (145), Expect = 1e-11
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 35 FDRVHGYSLLGFVKKVGTATSRTDCFEMCLGERDFICRSANYNNATGECHMSDMDRITVA 94
F+RV G SL G V S +C +C E +CRS YN + EC + +
Sbjct: 3 FERVPGTSLSGTDVSVVDVPSAEECAALCTNEPR-VCRSFTYNPKSKECLLKSSSSGS-L 60
Query: 95 GHGAFEETKDIEYLENNC 112
+ ++Y E +C
Sbjct: 61 PPRLKRSDQGVDYYEKSC 78
Score = 54.5 bits (131), Expect = 8e-10
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 120 CEFKKLAGRILKTVDSVYQDVASIEECRELCLNSPYRCHSYDYGDTGDLVCRLSHHSRAT 179
C F+++ G L D DV S EEC LC N P C S+ Y + C L S +
Sbjct: 1 CSFERVPGTSLSGTDVSVVDVPSAEECAALCTNEPRVCRSFTY-NPKSKECLLKSSSSGS 59
Query: 180 L 180
L
Sbjct: 60 L 60
>gnl|CDD|215716 pfam00100, Zona_pellucida, Zona pellucida-like domain.
Length = 252
Score = 58.3 bits (141), Expect = 1e-09
Identities = 40/157 (25%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 182 GIQEYRNTVGIEVGNR---NTVIQHHDTIITSSDLGLAVTCQYDLTNKTVSNEVDLGVQG 238
G R GI N + I SD L V+C Y + +VS+ V
Sbjct: 53 GTTRQRTGDGIVYENEIVSQPSVSVGPPITRDSDRRLPVSCSYTSRSVSVSSVA---VLP 109
Query: 239 DVKSALTEEVVVDSPNVAMKI-TDRSGADVKP-SAEVGDPLALRFEILDPNS--PYEIFV 294
V S ++++ TD S P + E+GDPL + + P +F+
Sbjct: 110 TVPPVSPSPSGEGSLTFSLRLYTDDSYTSDYPVTIELGDPLYVEATVSVLPRSDPLVLFL 169
Query: 295 RELVAMDGVD---SSEIVLIDSNGCPTDHFIMGPLYK 328
A G D S LI+ NGCP D L
Sbjct: 170 DSCWATPGPDPDSSPRYDLIE-NGCPVDGDSTSTLSH 205
>gnl|CDD|214680 smart00473, PAN_AP, divergent subfamily of APPLE domains.
Apple-like domains present in Plasminogen, C. elegans
hypothetical ORFs and the extracellular portion of
plant receptor-like protein kinases. Predicted to
possess protein- and/or carbohydrate-binding functions.
Length = 78
Score = 50.3 bits (120), Expect = 3e-08
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 34 CFDRVHGYSLLGFVKKVGTATSRTDCFEMCLGERDFICRSANYNNATGECHMSD 87
CF R+ L GF + V + S +C CL + CRS YNN T C +
Sbjct: 5 CFVRLPNTKLPGFSRIVISVASLEECASKCL-NSNCSCRSFTYNNGTKGCLLWS 57
Score = 39.1 bits (91), Expect = 2e-04
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 122 FKKLAGRILKTVDSVYQDVASIEECRELCLNSPYRCHSYDYGDTGDLVCRLSHHSR 177
F +L L + VAS+EEC CLNS C S+ Y + G C L S
Sbjct: 6 FVRLPNTKLPGFSRIVISVASLEECASKCLNSNCSCRSFTY-NNGTKGCLLWSESS 60
>gnl|CDD|214579 smart00241, ZP, Zona pellucida (ZP) domain. ZP proteins are
responsible for sperm-adhesion fo the zona pellucida. ZP
domains are also present in multidomain transmembrane
proteins such as glycoprotein GP2, uromodulin and
TGF-beta receptor type III (betaglycan).
Length = 252
Score = 47.4 bits (113), Expect = 5e-06
Identities = 37/149 (24%), Positives = 51/149 (34%), Gaps = 27/149 (18%)
Query: 186 YRNTVGIEVGNRNTVIQHHDTIITSSD-LGLAVTCQYDLTNKTVSNEVDLGVQGDVKSAL 244
Y NT+ V H IT D C Y K N DV +
Sbjct: 67 YSNTL--------VVSPFHPGFITRDDRAAYHFQCFYPENEKVSLN-------LDVSTIP 111
Query: 245 TEEVVVDS---PNVAMKI-TDRSGADVKPSA--EVGDPLALRFEILDPNSP-YEIFVREL 297
E+ S + ++ D S SA +GDP+ +E + P + V
Sbjct: 112 PTELSSVSEGPLTCSYRLYKDDSFGSPYQSADYVLGDPVYHEWECDGADDPPLGLLVDNC 171
Query: 298 VAMDGVDSSEIV---LIDSNGCPTDHFIM 323
A G D S +ID NGCP D ++
Sbjct: 172 YATPGPDPSSGPKYFIID-NGCPVDGYLD 199
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein;
Provisional.
Length = 522
Score = 42.4 bits (100), Expect = 4e-04
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 403 QIFLQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
+ + NN ++N NNNNNNNN N+NN N+N
Sbjct: 7 HLSVHNNADDNYNNNNNNNNQINSNNPNNNG 37
Score = 41.6 bits (98), Expect = 7e-04
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
++N NNNNNNNN N+NN NNN N
Sbjct: 14 ADDNYNNNNNNNNQINSNNPNNNGN 38
Score = 40.5 bits (95), Expect = 0.002
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 403 QIFLQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
++ + +NN ++N NNNNNNNN N N
Sbjct: 2 VNLREHLSVHNNADDNYNNNNNNNNQINSNN 32
Score = 40.1 bits (94), Expect = 0.002
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHNK 433
NNNNNNNN N+NN NNN NN +K
Sbjct: 18 YNNNNNNNNQINSNNPNNNGNNQASK 43
Score = 38.9 bits (91), Expect = 0.004
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
++N NNNNNNNN N+NN NNN +N
Sbjct: 15 DDNYNNNNNNNNQINSNNPNNNGNN 39
Score = 38.9 bits (91), Expect = 0.005
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
+N NNNNNNNN N+NN NNN N+
Sbjct: 16 DNYNNNNNNNNQINSNNPNNNGNNQ 40
Score = 38.6 bits (90), Expect = 0.006
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHN 432
N NNNNNNNN N+NN NNN NN
Sbjct: 16 DNYNNNNNNNNQINSNNPNNNGNNQA 41
Score = 35.5 bits (82), Expect = 0.056
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHNK 433
NNNNNN N+NN NNN NN + +
Sbjct: 20 NNNNNNNQINSNNPNNNGNNQASKLPR 46
Score = 34.7 bits (80), Expect = 0.092
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHNK 433
NNNN N+NN NNN NN + K
Sbjct: 22 NNNNNQINSNNPNNNGNNQASKLPRGK 48
Score = 32.8 bits (75), Expect = 0.35
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
N N + + +NN ++N NNNNN+N
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNN 25
Score = 29.3 bits (66), Expect = 4.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 410 NNNNNNNNNNNNNNNNNNNNNHNK 433
N N + + +NN ++N NNN+N
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNN 24
>gnl|CDD|214408 MTH00036, ATP8, ATP synthase F0 subunit 8; Validated.
Length = 54
Score = 35.4 bits (82), Expect = 0.003
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 384 VNFLRYYDSLSTCFFLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNN 429
NFL L+ L NN + N +N+++N +++NNNN
Sbjct: 11 FNFL-----LAWSLVFIVFTYLLLNNWPSTNASNSSSNTSSSNNNN 51
Score = 28.1 bits (63), Expect = 1.0
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 411 NNNNNNNNNNNNNNNNNNNNHN 432
NN + N +N+++N ++++N
Sbjct: 28 LLNNWPSTNASNSSSNTSSSNN 49
Score = 27.3 bits (61), Expect = 2.6
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 412 NNNNNNNNNNNNNNNNNNNHNK 433
NN + N +N+++N ++ N
Sbjct: 28 LLNNWPSTNASNSSSNTSSSNN 49
>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain. This is a
short domain found in bacterial type II/III secretory
system proteins. The architecture of these proteins
suggest that this family may be functionally analogous
to pfam03958.
Length = 95
Score = 34.2 bits (79), Expect = 0.017
Identities = 3/24 (12%), Positives = 20/24 (83%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNN 430
+ +N++++++N++N +++++++
Sbjct: 28 SSGSNSSSSSSNSSNGGSSSSSSS 51
Score = 33.1 bits (76), Expect = 0.043
Identities = 3/23 (13%), Positives = 19/23 (82%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNN 430
+N++++++N++N +++++++
Sbjct: 30 GSNSSSSSSNSSNGGSSSSSSSG 52
Score = 33.1 bits (76), Expect = 0.050
Identities = 3/24 (12%), Positives = 20/24 (83%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNN 430
+N++++++N++N +++++++ +
Sbjct: 30 GSNSSSSSSNSSNGGSSSSSSSGD 53
Score = 32.3 bits (74), Expect = 0.100
Identities = 3/25 (12%), Positives = 21/25 (84%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
N++++++N++N +++++++ ++ +
Sbjct: 32 NSSSSSSNSSNGGSSSSSSSGDSSS 56
Score = 31.9 bits (73), Expect = 0.11
Identities = 3/24 (12%), Positives = 19/24 (79%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNN 430
+++ +N++++++N++N ++++
Sbjct: 25 SVSSSGSNSSSSSSNSSNGGSSSS 48
Score = 31.9 bits (73), Expect = 0.11
Identities = 3/23 (13%), Positives = 20/23 (86%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNN 430
+++ +N++++++N++N +++++
Sbjct: 27 SSSGSNSSSSSSNSSNGGSSSSS 49
Score = 30.8 bits (70), Expect = 0.31
Identities = 2/23 (8%), Positives = 19/23 (82%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNN 430
++++N++N +++++++ ++++
Sbjct: 35 SSSSNSSNGGSSSSSSSGDSSSG 57
Score = 27.3 bits (61), Expect = 5.2
Identities = 3/22 (13%), Positives = 17/22 (77%)
Query: 411 NNNNNNNNNNNNNNNNNNNNHN 432
+++ +N++++++N++N + +
Sbjct: 26 VSSSGSNSSSSSSNSSNGGSSS 47
>gnl|CDD|205936 pfam13763, DUF4167, Domain of unknown function (DUF4167).
Length = 80
Score = 33.4 bits (77), Expect = 0.028
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHNK 433
NNNN NNN + N N + N
Sbjct: 1 RGRNNNNRNNNRSGGNPRNRVFDSNG 26
Score = 33.1 bits (76), Expect = 0.033
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNH 431
NNNN NNN + N N ++N
Sbjct: 2 GRNNNNRNNNRSGGNPRNRVFDSNG 26
Score = 31.1 bits (71), Expect = 0.20
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNH 431
+ NNNN NNN + N N +++
Sbjct: 1 RGRNNNNRNNNRSGGNPRNRVFDSN 25
Score = 30.7 bits (70), Expect = 0.23
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHNK 433
NNN NNN + N N ++N K
Sbjct: 4 NNNNRNNNRSGGNPRNRVFDSNGPDVK 30
Score = 27.3 bits (61), Expect = 3.6
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHN 432
N NNN + N N ++N +
Sbjct: 6 NNRNNNRSGGNPRNRVFDSNGPDVKV 31
>gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein. This
family of proteins represents the complementary sex
determiner in the honeybee. In the honeybee, the
mechanism of sex determination depends on the csd gene
which produces an SR-type protein. Males are homozygous
while females are homozygous for the csd gene.
Heterozygosity generates an active protein which
initiates female development.
Length = 146
Score = 34.7 bits (79), Expect = 0.036
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 411 NNNNNNNNNNNNNNNNNNNNHNK 433
+ +N +NN N NNN NN NN+NK
Sbjct: 51 SLSNLSNNYNYNNNYNNYNNYNK 73
Score = 34.3 bits (78), Expect = 0.038
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 406 LQNNNNNNNNNNNNNNNNNNNNNNNH 431
+ + +N +NN N NNN NN NN N H
Sbjct: 49 ISSLSNLSNNYNYNNNYNNYNNYNKH 74
Score = 32.0 bits (72), Expect = 0.25
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 403 QIFLQNNNNNNNNNNNNNNNNNNNNNNNH 431
+I +N +NN N NNN NN NN N ++
Sbjct: 47 KIISSLSNLSNNYNYNNNYNNYNNYNKHY 75
Score = 32.0 bits (72), Expect = 0.29
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
+N +NN N NNN NN NN N + +N
Sbjct: 53 SNLSNNYNYNNNYNNYNNYNKHYYN 77
Score = 29.3 bits (65), Expect = 1.9
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 406 LQNNNNNNNNNNNNNNNNNNNNNNNH 431
L NN N NNN NN NN N + N N+
Sbjct: 55 LSNNYNYNNNYNNYNNYNKHYYNINY 80
Score = 29.3 bits (65), Expect = 2.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
+NN N NNN NN NN N + N N
Sbjct: 55 LSNNYNYNNNYNNYNNYNKHYYNIN 79
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 36.2 bits (83), Expect = 0.039
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNN 430
++N NNN NN ++NNNNNNNNNN
Sbjct: 672 KDNKENNNKNNKDDNNNNNNNNNN 695
Score = 36.2 bits (83), Expect = 0.042
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 401 PLQIFLQNNNNNNNNNNNNNNNNNNNNNNN 430
P + +NNN NN ++NNNNNNNNNN NN
Sbjct: 670 PTKDNKENNNKNNKDDNNNNNNNNNNKINN 699
Score = 35.8 bits (82), Expect = 0.054
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
N NNN NN ++NNNNNNNNNN N
Sbjct: 674 NKENNNKNNKDDNNNNNNNNNNKIN 698
Score = 35.4 bits (81), Expect = 0.060
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 410 NNNNNNNNNNNNNNNNNNNNNHNK 433
+N NNN NN ++NNNNNNNN+NK
Sbjct: 673 DNKENNNKNNKDDNNNNNNNNNNK 696
Score = 35.0 bits (80), Expect = 0.096
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
NNN NN ++NNNNNNNNNN +N
Sbjct: 675 KENNNKNNKDDNNNNNNNNNNKINN 699
Score = 34.6 bits (79), Expect = 0.13
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 409 NNNNNNNNNNNNNNNNNNNNNNH 431
+N NNN NN ++NNNNNNNNN+
Sbjct: 673 DNKENNNKNNKDDNNNNNNNNNN 695
Score = 33.1 bits (75), Expect = 0.32
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNH 431
+ NNN NN ++NNNNNNNNNN N+
Sbjct: 675 KENNNKNNKDDNNNNNNNNNNKINN 699
Score = 31.2 bits (70), Expect = 1.4
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNH 431
NN ++NNNNNNNNNN NN ++
Sbjct: 679 NKNNKDDNNNNNNNNNNKINNAGSY 703
>gnl|CDD|168775 PRK07034, PRK07034, hypothetical protein; Provisional.
Length = 536
Score = 35.1 bits (80), Expect = 0.079
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 401 PLQIFLQNNNNN----NNNNNNNNNNNNNNNNNNHN 432
P+ ++ Q N N N NNNN N +NNN N +N+N
Sbjct: 79 PVTLYQQQPNANDSYPNGNNNNPNGDNNNPNGSNNN 114
Score = 31.7 bits (71), Expect = 0.91
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 400 SPLQIFLQNNNNNNNNNNNNNNNNNNNNNNNHN 432
+P Q N N++ N NNNN N +NNN N
Sbjct: 77 APPVTLYQQQPNANDSYPNGNNNNPNGDNNNPN 109
>gnl|CDD|197324 cd09090, INPP5c_ScInp51p-like, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of Saccharomyces
cerevisiae Inp51p, Inp52p, and Inp53p, and related
proteins. This subfamily contains the INPP5c domain of
three Saccharomyces cerevisiae synaptojanin-like
inositol polyphosphate 5-phosphatases (INP51, INP52, and
INP53), Schizosaccharomyces pombe synaptojanin
(SPsynaptojanin), and related proteins. It belongs to a
family of Mg2+-dependent inositol polyphosphate
5-phosphatases, which hydrolyze the 5-phosphate from the
inositol ring of various 5-position phosphorylated
phosphoinositides (PIs) and inositol phosphates (IPs),
and to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. In addition to this INPP5c domain, these proteins
have an N-terminal catalytic Sac1-like domain (found in
other proteins including the phophoinositide phosphatase
Sac1p), and a C-terminal proline-rich domain (PRD). The
Sac1 domain allows Inp52p and Inp53p to recognize and
dephosphorylate a wider range of substrates including
PI3P, PI4P, and PI(3,5)P2. The Sac1 domain of Inp51p is
non-functional. Disruption of any two of INP51, INP52,
and INP53, in S. cerevisiae leads to abnormal vacuolar
and plasma membrane morphology. During hyperosmotic
stress, Inp52p and Inp53p localize at actin patches,
where they may facilitate the hydrolysis of PI(4,5)P2,
and consequently promote actin rearrangement to regulate
cell growth. SPsynaptojanin is also active against a
range of soluble and lipid inositol phosphates,
including I(1,4,5)P3, I(1,3,4,5)P4, I(1,4,5,6)P4,
PI(4,5)P2, and PIP3. Transformation of S. cerevisiae
with a plasmid expressing the SPsynaptojanin
5-phosphatase domain rescues inp51/inp52/inp53
triple-mutant strains.
Length = 291
Score = 34.2 bits (79), Expect = 0.11
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 159 SYDYGDTGDLVCRLSHHSRATLVGIQE-YRNTVGIEVG---NRNTVIQHHDTIITSSDLG 214
+DYGDT C ++ H A L +E + I G +R I+ HD +I D
Sbjct: 127 RFDYGDTS--FCFVTSHLAAGLTNYEERNNDYKTIARGLRFSRGRTIKDHDHVIWLGDFN 184
Query: 215 LAVTCQYDLTNKTVSNEV 232
++ + + + N
Sbjct: 185 YRISLTNEDVRRFILNGK 202
>gnl|CDD|220296 pfam09580, Spore_YhcN_YlaJ, Sporulation lipoprotein YhcN/YlaJ
(Spore_YhcN_YlaJ). This entry contains YhcN and YlaJ,
which are predicted lipoproteins that have been detected
as spore proteins but not vegetative proteins in
Bacillus subtilis. Both appear to be expressed under
control of the RNA polymerase sigma-G factor. The
YlaJ-like members of this family have a low-complexity,
strongly acidic, 40-residue C-terminal domain.
Length = 169
Score = 32.3 bits (74), Expect = 0.25
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 406 LQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
+ +N+ N NN NN NN NNNN K
Sbjct: 23 VTDNDGNTNNVNNRNNRNNNNGYGRLTK 50
Score = 30.0 bits (68), Expect = 1.7
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 403 QIFLQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
Q N+ N NN NN NN NNNN
Sbjct: 21 QNVTDNDGNTNNVNNRNNRNNNNGYGRLTKN 51
Score = 28.5 bits (64), Expect = 4.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
N NN NN NN NNNN +N
Sbjct: 28 GNTNNVNNRNNRNNNNGYGRLTKNN 52
Score = 28.5 bits (64), Expect = 5.1
Identities = 10/25 (40%), Positives = 10/25 (40%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
N NN NNNN NN N
Sbjct: 35 NRNNRNNNNGYGRLTKNNVTGENGY 59
Score = 28.5 bits (64), Expect = 5.1
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
NN NNNN NN N +N
Sbjct: 37 NNRNNNNGYGRLTKNNVTGENGYNN 61
Score = 28.5 bits (64), Expect = 5.5
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHNK 433
NN NN NN NNNN NN +
Sbjct: 30 TNNVNNRNNRNNNNGYGRLTKNNVTGE 56
Score = 28.1 bits (63), Expect = 6.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
NN NN NNNN NN N
Sbjct: 33 VNNRNNRNNNNGYGRLTKNNVTGEN 57
Score = 27.7 bits (62), Expect = 7.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHN 432
NN NN NN NNNN NN
Sbjct: 29 NTNNVNNRNNRNNNNGYGRLTKNNVT 54
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 33.2 bits (75), Expect = 0.27
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 408 NNNNNN------NNNNNNNNNNNNNNNNNHNK 433
N NN N N N N N+N N N+N N N+
Sbjct: 324 NTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQ 355
Score = 31.7 bits (71), Expect = 0.73
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 408 NNNNNNNNNN------NNNNNNNNNNNNNHN 432
N N N NN N N N N N+N N N N
Sbjct: 320 NTNTNTNNTNTSTPSKNTNTNTNSNTNTNSN 350
Score = 31.7 bits (71), Expect = 0.92
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
N N+N N N+N N N ++NNN N
Sbjct: 339 TNTNSNTNTNSNTNANQGSSNNNSN 363
Score = 30.5 bits (68), Expect = 1.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 409 NNNNNNNNNNNNNNNNNNNNNNHN 432
N N N N+N N N+N N N + N
Sbjct: 336 NTNTNTNSNTNTNSNTNANQGSSN 359
Score = 30.5 bits (68), Expect = 1.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
N N N+N N N+N N N ++NN++
Sbjct: 338 NTNTNSNTNTNSNTNANQGSSNNNS 362
Score = 30.2 bits (67), Expect = 2.7
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 408 NNNNNNNNNNNN------NNNNNNNNNNNHN 432
N N N N NN N N N N N+N N N
Sbjct: 318 NTNTNTNTNNTNTSTPSKNTNTNTNSNTNTN 348
>gnl|CDD|218552 pfam05316, VAR1, Mitochondrial ribosomal protein (VAR1). This
family consists of the yeast mitochondrial ribosomal
proteins VAR1. Mitochondria possess their own ribosomes
responsible for the synthesis of a small number of
proteins encoded by the mitochondrial genome. In yeast
the two ribosomal RNAs and a single ribosomal protein,
VAR1, are products of mitochondrial genes, and the
remaining approximately 80 ribosomal proteins are
encoded in the nucleus. VAR1 along with 15S rRNA are
necessary for the formation of mature 37S subunits.
Length = 350
Score = 32.6 bits (74), Expect = 0.34
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 405 FLQNNNNNNNNNNNNNNNNNNNNNNNHN 432
++ N NNNNN NN NN+NNN N +N
Sbjct: 229 YINNINNNNNIKYNNMINNSNNNLNINN 256
Score = 32.6 bits (74), Expect = 0.42
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
NNNN NN NN+NNN N NN +N
Sbjct: 235 NNNNIKYNNMINNSNNNLNINNIYN 259
Score = 32.2 bits (73), Expect = 0.46
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHNK 433
NNNNN NN NN+NNN N NN
Sbjct: 234 NNNNNIKYNNMINNSNNNLNINNIYN 259
Score = 31.5 bits (71), Expect = 0.94
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 406 LQNNNNNNNNNNNNNNNNNNNNNNN 430
+ N+NNN N NN NN N N + +
Sbjct: 245 INNSNNNLNINNIYNNLNINKISMD 269
Score = 31.1 bits (70), Expect = 1.0
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 409 NNNNNNNNNNNNNNNNNNNNNNHNK 433
NN NNNNN NN NN+NNN +
Sbjct: 231 NNINNNNNIKYNNMINNSNNNLNIN 255
Score = 31.1 bits (70), Expect = 1.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 409 NNNNNNNNNNNNNNNNNNNNNNHN 432
NN+NNN N NN NN N N + +
Sbjct: 246 NNSNNNLNINNIYNNLNINKISMD 269
Score = 30.7 bits (69), Expect = 1.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 404 IFLQNNNNNNNNNNNNNNNNNNNNNN 429
+ +NNN N NN NN N N + +
Sbjct: 244 MINNSNNNLNINNIYNNLNINKISMD 269
Score = 29.9 bits (67), Expect = 2.6
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 370 IIIYGDINDTNGESVNFLRYYDSLSTCFFLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNN 429
I+ G +N S+ SLS +++L+NN N N N NN+N NNN
Sbjct: 281 ILFKGRLNKNISRSIKTRLLNGSLSN-------KLYLKNNINKNYKLNYIPNNHNIYNNN 333
Query: 430 NHNK 433
N NK
Sbjct: 334 NVNK 337
Score = 29.9 bits (67), Expect = 2.8
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
NN NN+NNN N NN NN N N
Sbjct: 242 NNMINNSNNNLNINNIYNNLNINKI 266
Score = 29.5 bits (66), Expect = 3.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 406 LQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
N NN+NNN N NN NN N N +
Sbjct: 241 YNNMINNSNNNLNINNIYNNLNINKISM 268
Score = 28.0 bits (62), Expect = 9.3
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 406 LQNNNNNNNNNNNNNNNNN--NNNNNNHN 432
+ N NN NNNNN NN NN+NNN N
Sbjct: 225 ISMNYINNINNNNNIKYNNMINNSNNNLN 253
>gnl|CDD|221195 pfam11737, DUF3300, Protein of unknown function (DUF3300). This
hypothetical bacterial gene product has a long
hydrophobic segment and is thus likely to be a membrane
protein.
Length = 230
Score = 32.2 bits (74), Expect = 0.40
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHN 432
+N+NN N NN+ ++ HN
Sbjct: 206 HNHNNRINRNNDRVVSSGGQRWQHN 230
Score = 29.2 bits (66), Expect = 3.6
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 410 NNNNNNNNNNNNNNNNNNNNNHNK 433
N+N+NN N NN+ ++ +
Sbjct: 205 NHNHNNRINRNNDRVVSSGGQRWQ 228
>gnl|CDD|177251 MTH00208, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 628
Score = 32.3 bits (74), Expect = 0.52
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 393 LSTCFFLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNNN 430
L + FF S L +N + NNNNN+ N NN+N +
Sbjct: 21 LISIFFSSNLPNISTSNASLGGNNNNNSIINYNNSNFS 58
Score = 30.3 bits (69), Expect = 2.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 392 SLSTCFFLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNNN 430
L F S + +N + NNNNN+ N NN+N
Sbjct: 19 ILLISIFFSSNLPNISTSNASLGGNNNNNSIINYNNSNF 57
Score = 29.6 bits (67), Expect = 3.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 392 SLSTCFFLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
+LS L F N N + +N + NNNNN+ N+N
Sbjct: 13 NLSIFIILLISIFFSSNLPNISTSNASLGGNNNNNSIINYNN 54
Score = 28.4 bits (64), Expect = 8.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 392 SLSTCFFLSPLQIFLQNNNNNNNNNNNNNNNNNNN 426
S +S L NNNNN+ N NN+N + +
Sbjct: 26 FSSNLPNISTSNASLGGNNNNNSIINYNNSNFSIS 60
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 32.5 bits (74), Expect = 0.53
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 398 FLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNNN 430
F F N ++NNNNNN NN++ N
Sbjct: 37 FQFSHLNFYNEKNEEKSSNNNNNNYNNSSINRK 69
Score = 31.7 bits (72), Expect = 0.84
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 401 PLQIFLQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
Q N N N ++NNNNNN NN++ N+
Sbjct: 36 NFQFSHLNFYNEKNEEKSSNNNNNNYNNSSINR 68
Score = 30.2 bits (68), Expect = 2.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 409 NNNNNNNNNNNNNNNNNNNNNNHN 432
NNNNNN NN++ N +N N
Sbjct: 55 NNNNNNYNNSSINRKKDNKNYMKR 78
Score = 28.6 bits (64), Expect = 9.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNH 431
NNNNNN NN++ N +N N
Sbjct: 55 NNNNNNYNNSSINRKKDNKNYMKR 78
>gnl|CDD|218858 pfam06024, DUF912, Nucleopolyhedrovirus protein of unknown function
(DUF912). This family consists of several
Nucleopolyhedrovirus proteins of unknown function.
Length = 101
Score = 30.0 bits (68), Expect = 0.76
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 401 PLQIFLQNNNNNNNNNNNNNNNNNNNNNNN 430
PL++ L ++N++NN N NN + N+
Sbjct: 18 PLKLALNDDNDDNNAPINANNTQSVYPKND 47
Score = 28.4 bits (64), Expect = 2.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 410 NNNNNNNNNNNNNNNNNNNNNHNK 433
N++N++NN N NN + N
Sbjct: 24 NDDNDDNNAPINANNTQSVYPKND 47
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 31.6 bits (72), Expect = 0.83
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHNK 433
N N NN +N NNN N NN K
Sbjct: 217 NINKEEKNNGSNVNNNGNKNNKEEQK 242
Score = 31.2 bits (71), Expect = 1.2
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHNK 433
N NN +N NNN N NN
Sbjct: 219 NKEEKNNGSNVNNNGNKNNKEEQKGN 244
Score = 30.5 bits (69), Expect = 2.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 402 LQIFLQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
L +++ N N NN +N NNN N +NK
Sbjct: 207 LDTLIKSKEININKEEKNNGSNVNNNGNKNNK 238
Score = 30.1 bits (68), Expect = 2.8
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 401 PLQIFLQNNNNNNNNNNNNNNNNNNNNNNNHN 432
+I + NN +N NNN N NN N
Sbjct: 213 SKEININKEEKNNGSNVNNNGNKNNKEEQKGN 244
Score = 28.5 bits (64), Expect = 7.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHNK 433
N N NN +N NNN N N+ +
Sbjct: 213 SKEININKEEKNNGSNVNNNGNKNNKE 239
>gnl|CDD|238533 cd01100, APPLE_Factor_XI_like, Subfamily of PAN/APPLE-like
domains; present in plasma prekallikrein/coagulation
factor XI, microneme antigen proteins, and a few
prokaryotic proteins. PAN/APPLE domains fulfill diverse
biological functions by mediating protein-protein or
protein-carbohydrate interactions.
Length = 73
Score = 28.9 bits (65), Expect = 0.96
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 34 CFDRVHGYSLLGFVKKVGTATSRTDCFEMCLGERDFICRSANYNNATGECHM 85
CF + G A+S C C D C + YN + +C +
Sbjct: 5 CFRQGSNVDFRGGDLSTVFASSAEQCQAACTA--DPGCLAFTYNTKSKKCFL 54
>gnl|CDD|188873 cd09213, Luminal_IRE1_like, The Luminal domain, a dimerization
domain, of Inositol-requiring protein 1-like proteins.
The Luminal domain is a dimerization domain present in
Inositol-requiring protein 1 (IRE1), eukaryotic
translation Initiation Factor 2-Alpha Kinase 3
(EIF2AK3), and similar proteins. IRE1 and EIF2AK3 are
serine/threonine protein kinases (STKs) and are type I
transmembrane proteins that are localized in the
endoplasmic reticulum (ER). They are kinase receptors
that are activated through the release of BiP, a
chaperone bound to their luminal domains under
unstressed conditions. This results in dimerization
through their luminal domains, allowing
trans-autophosphorylation of their kinase domains and
activation. They play roles in the signaling of the
unfolded protein response (UPR), which is activated when
protein misfolding is detected in the ER in order to
decrease the synthesis of new proteins and increase the
capacity of the ER to cope with the stress. IRE1, also
called Endoplasmic reticulum (ER)-to-nucleus signaling
protein (or ERN), contains an endoribonuclease domain in
its cytoplasmic side and acts as an ER stress sensor. It
is the oldest and most conserved component of the UPR in
eukaryotes. Its activation results in the cleavage of
its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans,
promoting a splicing event that enables translation into
a transcription factor which activates the UPR. EIF2AK3,
also called PKR-like Endoplasmic Reticulum Kinase
(PERK), phosphorylates the alpha subunit of eIF-2,
resulting in the downregulation of protein synthesis. It
functions as the central regulator of translational
control during the UPR pathway. In addition to the eIF-2
alpha subunit, EIF2AK3 also phosphorylates Nrf2, a
leucine zipper transcription factor which regulates
cellular redox status and promotes cell survival during
the UPR.
Length = 312
Score = 30.9 bits (70), Expect = 1.1
Identities = 4/39 (10%), Positives = 11/39 (28%), Gaps = 4/39 (10%)
Query: 399 LSPLQIFLQ----NNNNNNNNNNNNNNNNNNNNNNNHNK 433
Q+F + + + +N N + +
Sbjct: 271 HENGQLFALSSPSKSEDKESAISNILEGENTSPSALEGV 309
>gnl|CDD|222130 pfam13439, Glyco_transf_4, Glycosyltransferase Family 4.
Length = 171
Score = 30.1 bits (68), Expect = 1.4
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 287 NSPYEIFVRELVAMDGVDSSEIVLIDSNGCPTDHF 321
S V + +A GV +I +I NG T+ F
Sbjct: 140 VSEE---VADELARYGVPEEKIRVI-PNGVDTERF 170
>gnl|CDD|227698 COG5411, COG5411, Phosphatidylinositol 5-phosphate phosphatase
[Signal transduction mechanisms].
Length = 460
Score = 30.5 bits (69), Expect = 1.6
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 159 SYDYGDTGDLVCRLSHHSRATLVGIQE----YRNTVGIEVGNRNTVIQHHDTIITSSDLG 214
++Y T C ++ H A + I+E YR+ +R I HDTI DL
Sbjct: 159 RFNYERTS--FCFVNSHLAAGVNNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLN 216
Query: 215 LAVTCQYDLTNKTVSNEV 232
VT TN+ V E+
Sbjct: 217 YRVT----STNEEVRPEI 230
>gnl|CDD|151365 pfam10918, DUF2718, Protein of unknown function (DUF2718). This
viral family of proteins has no known function.
Length = 140
Score = 29.2 bits (65), Expect = 2.0
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 11/67 (16%)
Query: 357 SSIQNIQILTMHEIIIYGDINDTNGESVNFLRYYDSLSTCFFLSPLQIFLQNNNNNNNNN 416
S I N + L + E I++ N V +D F+ F +
Sbjct: 64 SPIPNEKPLKLKEQAEKPPISERNNNGV-----FD------FMKIPNPFKRYYEYCYPYP 112
Query: 417 NNNNNNN 423
N N N
Sbjct: 113 NKNAKNQ 119
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 30.3 bits (68), Expect = 2.7
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 401 PLQIFLQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
P I +NN ++N+NN++ +++N+ +N N+
Sbjct: 312 PKNIIHRNNGSSNSNNDDTSSSNHLGSNRISNR 344
>gnl|CDD|150787 pfam10154, DUF2362, Uncharacterized conserved protein (DUF2362).
This is a family of proteins conserved from nematodes to
humans. The function is not known.
Length = 501
Score = 29.8 bits (67), Expect = 3.3
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 412 NNNNNNNNNNNNNNNNNNNHNK 433
+ + NN +N N N+ K
Sbjct: 154 TDQDVNNLAAQHNENQNSIEKK 175
Score = 28.6 bits (64), Expect = 7.2
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 401 PLQIFLQNNNNNNNNNNNNNNNN 423
L L + + NN +N N N
Sbjct: 148 ELGKSLTDQDVNNLAAQHNENQN 170
>gnl|CDD|177060 CHL00138, rps5, ribosomal protein S5; Validated.
Length = 143
Score = 28.4 bits (64), Expect = 3.5
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 404 IFLQNNNNNNNNNNNNNNNNNN 425
+FL N N +N N
Sbjct: 2 LFLLKKMYNKKKNRKSNIKENK 23
>gnl|CDD|214445 MTH00166, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 160
Score = 28.6 bits (65), Expect = 3.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 397 FFLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
FL L + L N N+ +N NNN N N+ + +K
Sbjct: 85 LFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSK 121
>gnl|CDD|235152 PRK03705, PRK03705, glycogen debranching enzyme; Provisional.
Length = 658
Score = 29.6 bits (67), Expect = 3.7
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 383 SVNFLRYYDSLSTCFFLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
S+N + +D F L F N +N N N + NNN +NNH K
Sbjct: 435 SINLVTAHDG----FTLRDCVCF--NQKHNEANGEENRDGTNNNYSNNHGK 479
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 29.4 bits (66), Expect = 3.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHNK 433
+ NNNN +NN N + N ++ N K
Sbjct: 58 PSENNNNKSNNENKDEENPSSTNPEKK 84
>gnl|CDD|214411 MTH00044, ND4, NADH dehydrogenase subunit 4; Validated.
Length = 458
Score = 29.6 bits (67), Expect = 4.0
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 357 SSIQNIQILTMHEIIIYGDINDTNGESVNFLRYY---DSLST-----CFFLSPLQIFLQN 408
SI ++++ + + N + S + L DSLS+ +L+PL +
Sbjct: 26 ISISQSSLISLLSLFLLN--NHWS-SSWHNLSLSLATDSLSSPLIILSCWLAPLSLLASI 82
Query: 409 NNNNNNNNNNNNN 421
N+ +NN+ NN
Sbjct: 83 NHLSNNSPNNQRT 95
>gnl|CDD|131944 TIGR02898, spore_YhcN_YlaJ, sporulation lipoprotein, YhcN/YlaJ
family. YhcN and YlaJ are predicted lipoproteins that
have been detected as spore proteins but not vegetative
proteins in Bacillus subtilis. Both appear to be
expressed under control of the RNA polymerase sigma-G
factor. The YlaJ-like members of this family have a
low-complexity, strongly acidic 40-residue C-terminal
domain that is not included in the seed alignment for
this model. A portion of the low-complexity region
between the lipoprotein signal sequence and the main
conserved region of the protein family was also excised
from the seed alignment [Cellular processes, Sporulation
and germination].
Length = 158
Score = 28.5 bits (64), Expect = 4.5
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 392 SLSTCFFLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
L L+ + N NNN N + NNN N N
Sbjct: 5 ILLLLLVLTGCTNAQKKNPPNNNVGETNVMSKNNNGMNTTND 46
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 28.9 bits (65), Expect = 4.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 408 NNNNNNNNNNNNNNNNNNNNNNNHNK 433
+N N + N NN NN NK
Sbjct: 116 FKKKSNKNGSVEKNECINNKNNVINK 141
Score = 28.5 bits (64), Expect = 6.3
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 404 IFLQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
F + +N N + N NN NN N K
Sbjct: 115 YFKKKSNKNGSVEKNECINNKNNVINKKIK 144
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family,
translational repressor [Translation, ribosomal
structure and biogenesis].
Length = 777
Score = 28.9 bits (65), Expect = 5.5
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 398 FLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
L L + + + + N + N N N N
Sbjct: 342 SLPSLLNPVFLSTSTGFSLTNLSGYLNPNKNLKKNT 377
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 29.1 bits (66), Expect = 5.9
Identities = 0/26 (0%), Positives = 4/26 (15%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHN 432
+ + + +
Sbjct: 210 EQGDRREERGRRDGGDRRGRRRRRDR 235
Score = 29.1 bits (66), Expect = 6.2
Identities = 0/26 (0%), Positives = 5/26 (19%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHN 432
+ + + + +
Sbjct: 205 RRDRREQGDRREERGRRDGGDRRGRR 230
Score = 28.7 bits (65), Expect = 7.0
Identities = 0/26 (0%), Positives = 5/26 (19%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHN 432
+ + + + +
Sbjct: 201 DDRDRRDRREQGDRREERGRRDGGDR 226
Score = 28.7 bits (65), Expect = 7.9
Identities = 1/26 (3%), Positives = 5/26 (19%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHN 432
Q + + + +
Sbjct: 211 QGDRREERGRRDGGDRRGRRRRRDRR 236
Score = 28.7 bits (65), Expect = 8.1
Identities = 0/25 (0%), Positives = 6/25 (24%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNH 431
++ + + + +
Sbjct: 203 RDRRDRREQGDRREERGRRDGGDRR 227
>gnl|CDD|215096 PLN00192, PLN00192, aldehyde oxidase.
Length = 1344
Score = 28.9 bits (65), Expect = 6.7
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 389 YYDSLSTCF---FLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNNNHNK 433
Y SL+ F FLSPL +N ++N + +N N + H+
Sbjct: 513 YRSSLAVGFLFDFLSPLI----ESNAKSSNGWLDGGSNTKQNPDQHDD 556
>gnl|CDD|236275 PRK08486, PRK08486, single-stranded DNA-binding protein;
Provisional.
Length = 182
Score = 28.3 bits (63), Expect = 6.9
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHN 432
N N +N+ + N NNN N+N
Sbjct: 110 DNPQANAMQDNSFHENFNNNYPGNYN 135
>gnl|CDD|219312 pfam07150, DUF1390, Protein of unknown function (DUF1390). This
family consists of several Paramecium bursaria chlorella
virus 1 (PBCV-1) proteins of around 250 residues in
length. The function of this family is unknown.
Length = 229
Score = 28.1 bits (63), Expect = 7.4
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 409 NNNNNNNNNNNNNNNNNNNNNNHN 432
N N NNN NN N N N
Sbjct: 58 NINTGVVNNNVNNINKTINTKNIT 81
Score = 28.1 bits (63), Expect = 7.5
Identities = 10/26 (38%), Positives = 10/26 (38%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHN 432
N NNN NN N N N N
Sbjct: 58 NINTGVVNNNVNNINKTINTKNITIN 83
>gnl|CDD|202525 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. This family
includes amidohydrolases of formamide EC:3.5.1.49 and
acetamide. Methylophilus methylotrophus fmdA forms a
homotrimer suggesting all the members of this family
also do.
Length = 316
Score = 28.6 bits (64), Expect = 7.5
Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 16/80 (20%)
Query: 262 RSGADVKPSAEVGDPLALRFEILDPNSPYEIFVRELVAMDGVDSSEIVL--IDSNGCPTD 319
R D+ P+AEV +R E LD A+ G +
Sbjct: 7 RWHPDIPPAAEVKPGEIVRVETLD-------------ALGGQIKNNDSADDYKKIDLSVV 53
Query: 320 HFIMGPLY-KAADTGKFLNC 338
H + GP+ + A G L
Sbjct: 54 HPLTGPIEVEGAKPGDLLVV 73
>gnl|CDD|226445 COG3935, DnaD, Putative primosome component and related proteins
[DNA replication, recombination, and repair].
Length = 246
Score = 28.2 bits (63), Expect = 8.8
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 376 INDTNGESVNFLRYYDSLSTCFFLSPLQIFLQNNNNNN------NNNNNNNNNNNNNNNN 429
I D N N T + + Q+N+ NN + +N N N
Sbjct: 65 IKDVNKTIRNLTGRGLLQGTQEEIDNTIKYEQDNSPPLWKLLQLFVNNKSLEDNELKNQN 124
Query: 430 NHNK 433
K
Sbjct: 125 EDKK 128
>gnl|CDD|239175 cd02774, MopB_Res-Cmplx1_Nad11-M, MopB_Res_Cmplx1_Nad11_M:
Mitochondrial-encoded NADH-quinone
oxidoreductase/respiratory complex I, the second domain
of the Nad11/75-kDa subunit of some protists.
NADH-quinone oxidoreductase is the first
energy-transducting complex in the respiratory chain and
functions as a redox pump that uses the redox energy to
translocate H+ ions across the membrane, resulting in a
significant contribution to energy production. The nad11
gene codes for the largest (75-kDa) subunit of the
mitochondrial NADH-quinone oxidoreductase, it
constitutes the electron input part of the enzyme, or
the so-called NADH dehydrogenase fragment. The Nad11
subunit is made of two domains: the first contains three
binding sites for FeS clusters (the fer2 domain), the
second domain (this CD), is of unknown function or, as
postulated, has lost an ancestral formate dehydrogenase
activity that became redundant during the evolution of
the complex I enzyme. Although only vestigial sequence
evidence remains of a molybdopterin binding site, this
protein domain belongs to the molybdopterin_binding
(MopB) superfamily of proteins.
Length = 366
Score = 28.1 bits (63), Expect = 9.1
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 392 SLSTCFFLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNNNHN 432
L T F+ + L + N N+NN NNN N + N
Sbjct: 99 DLETLFYY---KKLLNKLGSLNTNSNNFLENNNYFNLDLEN 136
>gnl|CDD|223072 PHA03393, odv-e66, occlusion-derived virus envelope protein E66;
Provisional.
Length = 682
Score = 28.3 bits (64), Expect = 9.8
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 404 IFLQNNNNNNNNNNNNNNNNNNNNNNN 430
I L +NNNNN N N N
Sbjct: 18 ILLWQSNNNNNTPNPPNPPPNPPPPPP 44
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.407
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,952,889
Number of extensions: 1997722
Number of successful extensions: 3915
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3239
Number of HSP's successfully gapped: 213
Length of query: 433
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 333
Effective length of database: 6,502,202
Effective search space: 2165233266
Effective search space used: 2165233266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.1 bits)