RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3106
(433 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 4e-07
Identities = 46/402 (11%), Positives = 98/402 (24%), Gaps = 142/402 (35%)
Query: 38 VHGYSLLGFVKKVGTATSRTDCFEMCLGERDFICRSANYNNA----TGECHMSDMDRITV 93
+ G +LG K ++C + + C+
Sbjct: 155 IDG--VLGSGKTWVAL-------DVC---LSYKVQCKMDFKIFWLNLKNCN--------- 193
Query: 94 AGHGAFEETKDIEYLENNCVDEPAKLCEFKKLAGRILKTVDSVYQDVASIEECRELCLNS 153
+E L+ L +D + + N
Sbjct: 194 ------SPETVLEMLQK--------LL----------YQIDPNWTSRSDHSS------NI 223
Query: 154 PYRCHSYDYGDTGDLVCRLSHHSRATLVGIQEYRNTVGI--EVGNRNTVIQHHD----TI 207
R HS L L+ + Y N + + V N + +
Sbjct: 224 KLRIHSIQA--------ELRR-----LLKSKPYENCLLVLLNVQNAK-AWNAFNLSCKIL 269
Query: 208 ITSSDLGLAVTCQYDLTNKTVSNEVDLGVQGDVKSALTEEVVVDSPNVAMKITDRSGADV 267
+T+ + D + + + L LT + + ++ +K D D+
Sbjct: 270 LTTRFKQVT-----DFLSAATTTHISLD---HHSMTLTPD---EVKSLLLKYLDCRPQDL 318
Query: 268 KPSAEVGDPLAL------------RF-------------------EILDPNSPYEIFVRE 296
+P L + +L+P ++F R
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 297 LVAMDGVDSSEIVLI-----DSNGCPTDHFIMGPLYKAADTGKFLNC-PHEGKCTLTMSK 350
V I+L ++ L+K + + P E ++
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMV--VVNKLHKYS----LVEKQPKESTISIPSIY 432
Query: 351 VSSCPRSSIQNIQILTMHEIIIYGDINDTNGESVNFLRYYDS 392
+ ++ +H I+ + N + +DS
Sbjct: 433 L----ELKVKLENEYALHRSIV---------DHYNIPKTFDS 461
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem
repeat, PAN_AP, P galactose-binding lectin, cellular
adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*
Length = 138
Score = 42.5 bits (99), Expect = 3e-05
Identities = 22/149 (14%), Positives = 33/149 (22%), Gaps = 16/149 (10%)
Query: 28 PCERAWCFDRVHGYSLLGFVKKVGTATSRTDCFEMCLGERDFICRSANYNNATGECHMSD 87
P CF V S DC + C C YN + +CH+
Sbjct: 3 PQLDVSCFAHDKNIGSRTEQLSVVHVASAQDCMKECQALPT--CSHFTYNKNSKKCHLKA 60
Query: 88 MDRITVAGHGAFEETKDIEYLENNCVDEPAKLCEFKKLAGRILKTVDSVYQDVASIEECR 147
G + +C + C + C
Sbjct: 61 GAPEFYTYTGDMTGPR-------SCEHNCSDACWMDGNNPLAVWDY-----SGQPPALCW 108
Query: 148 ELCLNSPYRCHSYDYGDTGDLVCRLSHHS 176
C+ +P C Y + S
Sbjct: 109 AACMGTP-GCDLYTF-QGMTCKLYSQTSS 135
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG
GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A
2feb_A
Length = 791
Score = 42.0 bits (98), Expect = 4e-04
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 35 FDRVHGYSLLGFVKKVGTATSRTDCFEMCLGERDFICRSANYNNATGECHMSDMDRITV 93
+ G SL KK A S +C C + +F CR+ Y++ +C + +R +
Sbjct: 6 YVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQYHSKEQQCVIMAENRKSS 64
Score = 31.6 bits (71), Expect = 0.61
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 119 LCEFKKLAGRILKTVDSVYQDVASIEECRELCLNSPY-RCHSYDY 162
L ++ G L +V SIEEC C C ++ Y
Sbjct: 3 LDDYVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQY 47
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}
Length = 161
Score = 36.0 bits (82), Expect = 0.008
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 20/162 (12%)
Query: 34 CFDRVHGYSLLGFVKKVGTATSRTDCFEMCLGERDFICRSANYNNATGECHMSDMDRITV 93
C + S + + S C C C YN+ + CH+ +
Sbjct: 11 CVHSDNKGSRAPTIGEPVPDVSLEQCAAQCKAVDG--CTHFTYNDDSKMCHVKEGKPDLY 68
Query: 94 AGHGAFEETKDIEYLENNCVDEPAKLCEFKKLAGRILKTVDSVYQDVASIEECRELCLNS 153
G ++ +C + + A ++ + + +C+ C
Sbjct: 69 DLTGGKTASR-------SCDRSCFEQHVSYEGAPDVMTAM-----VTSQSADCQAACAAD 116
Query: 154 PYRCHSYDYGDTGDLVCRLSHHSRATLVGIQEYRNTVGIEVG 195
P C + Y + D C + + R +G+ G
Sbjct: 117 P-SCEIFTY-NEHDQKCTFKGRGFSA----FKERGVLGVTSG 152
Score = 34.1 bits (77), Expect = 0.033
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 25 GVKPCERAWCFDRVHGYSLLGFVKKVGTATSRTDCFEMCLGERDFICRSANYNNATGECH 84
+ C+R CF++ Y V + DC C + C YN +C
Sbjct: 76 ASRSCDR-SCFEQHVSYEGAPDVMTAMVTSQSADCQAACAADPS--CEIFTYNEHDQKCT 132
Query: 85 MSDMD 89
Sbjct: 133 FKGRG 137
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.018
Identities = 50/374 (13%), Positives = 105/374 (28%), Gaps = 140/374 (37%)
Query: 44 LGFVKKV---GTATSRTDCFEMCLG--ERDFICRSANYNNATGECHMSDMDRITVAGHGA 98
LG+V + +CL E ++ N + H +A
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE-----GN---DIH-------ALAAKLL 109
Query: 99 FEETKDIE--------YLE-NNCVDEP-----------------AKLC---------E-- 121
E + Y+ P A+L +
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 122 FKKLAGRIL-KTVDSVYQDVAS--IEECRELCLN---SPYRCHSYDYGDTGDLVCRLSHH 175
F++L R L +T Y + I+ E + + +++ L +
Sbjct: 170 FEEL--RDLYQT----YHVLVGDLIKFSAETLSELIRTTLDAEKV-FTQGLNILEWLENP 222
Query: 176 SRA-------------TLVGI-Q--EYRNT---VGIEVGNRNTVIQ----HHDTIITSSD 212
S L+G+ Q Y T +G G + ++ H ++T+
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 213 LGLAVTCQ--YDLTNKTVSNEVDLGVQG-DV--KSALTEEVVVDSPNVA------M---- 257
+ + + + K ++ +GV+ + ++L ++ DS M
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 258 --------KITDRSGADVKPSAEVGDPLALRFEILDPNSPYEIFV--------------- 294
+++ + + +V ++L N + V
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVE--ISLV------NGA-KNLVVSGPPQSLYGLNLTL 393
Query: 295 RELVAMDGVDSSEI 308
R+ A G+D S I
Sbjct: 394 RKAKAPSGLDQSRI 407
Score = 35.4 bits (81), Expect = 0.041
Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 28/103 (27%)
Query: 49 KVGTATSRTDCFEMC--LGER-DFICRSANYNNATGECHMSDMDRITVAGHGAFEETKDI 105
+V + S+ + +G+R ++ NYN + + AG + + +
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE-NQ-------QYVAAG-----DLRAL 1862
Query: 106 EYLENNCVDEPAKLCEFKKLAGRILKTVDSVYQDVASIEECRE 148
+ + N + +K+ I++ S+ S+EE
Sbjct: 1863 DTVTNVL-----NFIKLQKI--DIIELQKSL-----SLEEVEG 1893
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.36
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 13/32 (40%)
Query: 121 EFKKLAGRILKTVDSVYQD-------V-ASIE 144
KKL LK +Y D + A++E
Sbjct: 21 ALKKLQAS-LK----LYADDSAPALAIKATME 47
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU
YEAD, GALM, sugar phosphate, isomerase; 1.90A
{Salmonella typhimurium} PDB: 2htb_A
Length = 309
Score = 30.5 bits (68), Expect = 1.1
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 6/118 (5%)
Query: 91 ITVAGHGAF----EETKDIEYLENNCVDEPAKLCEFKKLAG--RILKTVDSVYQDVASIE 144
T A H F + L + +D+ E G D VY + +
Sbjct: 174 TTSALHSYFNVGDIANVKVSGLGDRFIDKVNDAKEGVLTDGIQTFPDRTDRVYLNPEACS 233
Query: 145 ECRELCLNSPYRCHSYDYGDTGDLVCRLSHHSRATLVGIQEYRNTVGIEVGNRNTVIQ 202
+ LN + + + + + Y+ V +E Q
Sbjct: 234 VIHDATLNRTIDVVHHHHLNVVGWNPGPALSVSMGDMPDDGYKTFVCVETVYATAPQQ 291
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F,
structural genomics, unknown function; 1.57A
{Haemophilus influenzae} SCOP: b.30.5.7
Length = 270
Score = 29.4 bits (65), Expect = 2.2
Identities = 13/98 (13%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 105 IEYLENNCVDEPAKLCEFKKLAGRILKTVDSVYQDVASIEECRELCLNSPYRCHSYDYGD 164
++ L C + + E I + VD +Y ++ S R + + +
Sbjct: 163 VQGLPETCFNSLNQQQENVPSPRHISENVDCIYSAENM---QNQILDKSFNRTIALHHHN 219
Query: 165 TGDLVCRLSHHSRATLVGIQEYRNTVGIEVGNRNTVIQ 202
V H + + + Y+ + +E + +++
Sbjct: 220 ASQFVLWNPWHKKTSGMSETGYQKMLCLETARIHHLLE 257
>3sp8_A Hepatocyte growth factor alpha chain; kringle domain, Met
tyrosine kinase, hormone; HET: MES; 1.86A {Homo
sapiens} PDB: 3hn4_A*
Length = 264
Score = 28.5 bits (62), Expect = 3.8
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 45 GFVKKVGTATSRTDCFEMCLGER--DFICRSANYNNATGECH 84
K + C C + F C++ ++ A +C
Sbjct: 31 ALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCL 72
>2rqf_A HJHBP, hemolymph juvenIle hormone binding protein; HET: JH3; NMR
{Bombyx mori} PDB: 3a1z_A 3aos_A* 3aot_A*
Length = 227
Score = 28.5 bits (63), Expect = 3.8
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 11/98 (11%)
Query: 332 TGKFLNCPHEGKCTLTMSKVSSCPRSSIQNIQILTMHEIIIYGDINDTNGESVNFLRYYD 391
G + E + T + Y ND NG V
Sbjct: 100 VGDIVIELTEQSKSFT---------GLYTADTNVIGAVRYGYNLKNDDNG--VQHFEVQP 148
Query: 392 SLSTCFFLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNN 429
TC + +I L ++ ++ ++ NN+ +
Sbjct: 149 ETFTCESIGEPKITLSSDLSSALEKDSGNNSLEPDMEP 186
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 26.8 bits (60), Expect = 4.2
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 100 EETKDIEYLENNCVDEPAKLCEFKKLAGRILKTV 133
E D +Y + E + ++ AG+ ++TV
Sbjct: 26 NERDDFQYQYVDIRAEGITKEDLQQKAGKPVETV 59
>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A
{Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A
3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A
Length = 184
Score = 27.6 bits (60), Expect = 6.3
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Query: 35 FDRVHGYSLL----GFVKKVGTATSRTDCFEMCLGER--DFICRSANYNNATGECH 84
F + +L+ K + C C + F C++ ++ A +C
Sbjct: 17 FKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCL 72
>1wth_A Protein GP5, tail-associated lysozyme; triple-stranded beta-helix,
OB fold, pseudohexamer, T4 tail HUB, GP5-GP27; 2.80A
{Enterobacteria phage T4} PDB: 2z6b_A 1k28_A 1pdl_A
Length = 584
Score = 28.2 bits (61), Expect = 7.2
Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 5/88 (5%)
Query: 158 HSYDYGDTGDLVCRLSHHSRATLVGIQEYRNTVGIEVGNRNTVIQHHDTIITSSDLGLAV 217
H ++ DT H T + V N + + + D V
Sbjct: 399 HIQEFDDTPGQERYRLVHPTGTYEEVSPSGRRTRKTVDNLYDITNADGNFLVAGDKKTNV 458
Query: 218 TCQYDLTNK-----TVSNEVDLGVQGDV 240
N + + V+GD
Sbjct: 459 GGSEIYYNMDNRLHQIDGSNTIFVRGDE 486
>1ytv_M V1AR, vasopressin V1A receptor; GPCR, fusion protein, maltose-
binding protein, sugar binding protein, hormone
receptor; HET: MAL; 1.80A {Homo sapiens}
Length = 84
Score = 25.9 bits (56), Expect = 8.9
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 408 NNNNNNNNNNNNNN 421
N+++NNNNNNNNNN
Sbjct: 1 NSSSNNNNNNNNNN 14
Score = 25.9 bits (56), Expect = 8.9
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 409 NNNNNNNNNNNNNN 422
N+++NNNNNNNNNN
Sbjct: 1 NSSSNNNNNNNNNN 14
Score = 25.9 bits (56), Expect = 8.9
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 410 NNNNNNNNNNNNNN 423
N+++NNNNNNNNNN
Sbjct: 1 NSSSNNNNNNNNNN 14
Score = 25.9 bits (56), Expect = 8.9
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 411 NNNNNNNNNNNNNN 424
N+++NNNNNNNNNN
Sbjct: 1 NSSSNNNNNNNNNN 14
Score = 25.9 bits (56), Expect = 8.9
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 412 NNNNNNNNNNNNNN 425
N+++NNNNNNNNNN
Sbjct: 1 NSSSNNNNNNNNNN 14
Score = 25.9 bits (56), Expect = 8.9
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 413 NNNNNNNNNNNNNN 426
N+++NNNNNNNNNN
Sbjct: 1 NSSSNNNNNNNNNN 14
Score = 25.9 bits (56), Expect = 8.9
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 414 NNNNNNNNNNNNNN 427
N+++NNNNNNNNNN
Sbjct: 1 NSSSNNNNNNNNNN 14
Score = 25.9 bits (56), Expect = 8.9
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 415 NNNNNNNNNNNNNN 428
N+++NNNNNNNNNN
Sbjct: 1 NSSSNNNNNNNNNN 14
Score = 25.9 bits (56), Expect = 8.9
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 416 NNNNNNNNNNNNNN 429
N+++NNNNNNNNNN
Sbjct: 1 NSSSNNNNNNNNNN 14
Score = 25.9 bits (56), Expect = 8.9
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 417 NNNNNNNNNNNNNN 430
N+++NNNNNNNNNN
Sbjct: 1 NSSSNNNNNNNNNN 14
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.407
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,515,136
Number of extensions: 394534
Number of successful extensions: 1061
Number of sequences better than 10.0: 1
Number of HSP's gapped: 994
Number of HSP's successfully gapped: 37
Length of query: 433
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 337
Effective length of database: 4,021,377
Effective search space: 1355204049
Effective search space used: 1355204049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.9 bits)