RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3106
(433 letters)
>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 43.4 bits (102), Expect = 2e-06
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 49 KVGTATSRTDCFEMCL--GERDFICRSANYNNATGECHMSDMDRITVAGHGAFEETKDIE 106
K + C C F C++ ++ A +C + ++ E + +
Sbjct: 25 KTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSS--GVKKEFGHEFD 82
Query: 107 YLENNC 112
EN
Sbjct: 83 LYENKD 88
Score = 39.6 bits (92), Expect = 6e-05
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 119 LCEFKKLAGRIL----KTVDSVYQDVASIEECRELCLNSP---YRCHSYDYGDTGDLVCR 171
+ EFKK A L + + V + ++C C + + C ++ + D C
Sbjct: 4 IHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVF-DKARKQCL 62
Query: 172 LSHHSRAT 179
+ +
Sbjct: 63 WFPFNSMS 70
>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type
3, strain Sabin [TaxId: 12086]}
Length = 334
Score = 29.4 bits (66), Expect = 0.74
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHNK 433
Q + N+N + N N+ K
Sbjct: 7 QKVGAHENSNRAYGGSTINYTTINYYK 33
Score = 29.0 bits (65), Expect = 1.2
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHN 432
Q ++ + N+N + N
Sbjct: 3 QVSSQKVGAHENSNRAYGGSTINYTT 28
Score = 26.3 bits (58), Expect = 6.9
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHN 432
+ + N+N + N N
Sbjct: 5 SSQKVGAHENSNRAYGGSTINYTTIN 30
>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 320
Score = 29.4 bits (66), Expect = 0.81
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNN 430
Q + + + N+ + N N
Sbjct: 7 QKTGAHETSLSAAGNSIIHYTNIN 30
Score = 28.3 bits (63), Expect = 2.0
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHN 432
Q + + + + N+ + N
Sbjct: 3 QVSTQKTGAHETSLSAAGNSIIHYTN 28
Score = 26.3 bits (58), Expect = 7.0
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 409 NNNNNNNNNNNNNNNNNNNNNNHN 432
+ + + N+ + N N
Sbjct: 7 QKTGAHETSLSAAGNSIIHYTNIN 30
>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
rhinovirus 16, (HRV-16) [TaxId: 31708]}
Length = 296
Score = 28.6 bits (64), Expect = 1.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHNK 433
QN ++ N +N ++ N N N+ K
Sbjct: 7 QNVGTHSTQNMVSNGSSLNYFNINYFK 33
Score = 26.7 bits (59), Expect = 5.6
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 407 QNNNNNNNNNNNNNNNNNNNNNNNHN 432
Q + N ++ N +N ++ N N
Sbjct: 3 QVSRQNVGTHSTQNMVSNGSSLNYFN 28
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 27.6 bits (61), Expect = 3.1
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 5 GALTKSQFPVFTIYAQKTCLGVKPCERAWCFDRVHGYSLLG 45
+ PV+ + Q G+K +R WCF+ + +L
Sbjct: 215 ELVRNCDLPVWLSW-QVAKAGLKTNDRKWCFEGPEEHEILN 254
>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 556
Score = 27.6 bits (60), Expect = 3.7
Identities = 31/154 (20%), Positives = 52/154 (33%), Gaps = 23/154 (14%)
Query: 240 VKSALTEEVVVDSPNVAMKITDRSGADVKPSAEVGDPLALRFEILDPNSPYEIF-----V 294
+K AL +V+SP A +I+ G + +EI + V
Sbjct: 6 IKPAL---FIVESPTKARQISRFFGKPSVKVLDGAVV----YEIPMQKYVLMVTASIGHV 58
Query: 295 RELVAMDGVDSSEIVLIDSNGCPTDHFIMGPLYKAADTGKFLNCPHEGKCTLTMSKVSSC 354
+L+ G VL++ P I K + C S+
Sbjct: 59 VDLITNRGFHG---VLVNGRFVPVYASI-----KRCRDCGYQFTEDRESCPKCGSENVDN 110
Query: 355 PRSSIQNIQIL--TMHEIIIYGDINDTNGESVNF 386
RS I+ ++ L +I+ D DT GE + +
Sbjct: 111 SRSRIEALRKLAHDAEFVIVGTD-PDTEGEKIAW 143
>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
virus type 1 [TaxId: 11676]}
Length = 316
Score = 27.0 bits (60), Expect = 5.2
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 397 FFLSPLQIFLQNNNNNNNNNNNNNNNNNNNNN 428
FF + N+ + +NN ++
Sbjct: 207 FFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDT 238
Score = 26.6 bits (59), Expect = 5.5
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 397 FFLSPLQIFLQNNNNNNNNNNNNNNNNNNNNNN 429
F+ + Q+F N+ N+ + +NN ++
Sbjct: 208 FYCNSTQLF--NSTWFNSTWSTEGSNNTEGSDT 238
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase
{Pseudoalteromonas haloplanktis (Alteromonas
haloplanktis) [TaxId: 228]}
Length = 354
Score = 26.4 bits (57), Expect = 8.5
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 405 FLQNNNNNNNNNNNNNNNNNNNNNNNHN 432
F + + N +NN N +N
Sbjct: 307 FHGDTDAGGPNVPVHNNGNLECFASNWK 334
>g1fiw.1 b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries) [TaxId:
9940]}
Length = 274
Score = 25.9 bits (55), Expect = 9.2
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 146 CRELCLNSPYRCHSYDYGDTGD-LVCRLSHHSRATLVGI 183
+C P GD+G L+C+ S + +VGI
Sbjct: 194 STNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGI 232
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.407
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,598,108
Number of extensions: 76016
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 26
Length of query: 433
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 345
Effective length of database: 1,199,356
Effective search space: 413777820
Effective search space used: 413777820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)