Query psy3109
Match_columns 58
No_of_seqs 117 out of 723
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 16:41:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q7l_A Aminoacylase-1; catalys 99.0 5.8E-10 2E-14 69.8 6.1 46 1-46 114-159 (198)
2 4h2k_A Succinyl-diaminopimelat 98.8 1.7E-08 5.7E-13 65.5 7.3 47 1-48 104-150 (269)
3 3t68_A Succinyl-diaminopimelat 98.8 1.8E-08 6.3E-13 65.2 7.3 47 1-48 104-150 (268)
4 1lfw_A PEPV; hydrolase, dipept 98.8 2.1E-08 7.1E-13 68.5 6.7 39 1-39 120-158 (470)
5 2zog_A Cytosolic non-specific 98.7 2.5E-08 8.6E-13 68.3 6.4 46 1-47 137-182 (479)
6 1rtq_A Bacterial leucyl aminop 98.7 3.4E-08 1.2E-12 65.0 6.6 39 1-39 118-156 (299)
7 1vgy_A Succinyl-diaminopimelat 98.7 5E-08 1.7E-12 65.4 7.4 44 1-45 104-147 (393)
8 1tkj_A Aminopeptidase, SGAP; d 98.7 4.5E-08 1.6E-12 64.1 6.3 39 1-39 98-136 (284)
9 3khx_A Putative dipeptidase sa 98.7 4.1E-08 1.4E-12 68.4 6.3 39 1-39 139-177 (492)
10 1cg2_A Carboxypeptidase G2; me 98.7 5.4E-08 1.8E-12 65.3 6.3 46 1-47 120-165 (393)
11 2pok_A Peptidase, M20/M25/M40 98.6 6.2E-08 2.1E-12 66.7 6.4 47 1-48 148-194 (481)
12 3dlj_A Beta-Ala-His dipeptidas 98.6 6.8E-08 2.3E-12 66.8 6.4 46 1-47 144-189 (485)
13 2gre_A Deblocking aminopeptida 98.6 5.5E-08 1.9E-12 65.0 5.0 39 1-39 187-225 (349)
14 3pfo_A Putative acetylornithin 98.6 5.6E-08 1.9E-12 65.7 5.0 39 1-39 145-183 (433)
15 3pfe_A Succinyl-diaminopimelat 98.6 8.8E-08 3E-12 66.1 5.7 46 1-48 131-176 (472)
16 3ife_A Peptidase T; metallopep 98.6 4.8E-08 1.6E-12 66.6 3.9 37 1-37 167-203 (434)
17 3isz_A Succinyl-diaminopimelat 98.5 2.7E-07 9.2E-12 60.7 7.2 39 1-39 101-139 (377)
18 2v8h_A Beta-alanine synthase; 98.5 1E-07 3.4E-12 66.0 5.3 37 1-37 125-161 (474)
19 3ct9_A Acetylornithine deacety 98.5 2.1E-07 7.3E-12 62.0 5.4 37 1-39 106-143 (356)
20 3tx8_A Succinyl-diaminopimelat 98.5 3.6E-07 1.2E-11 60.5 6.3 43 1-44 104-146 (369)
21 1vhe_A Aminopeptidase/glucanas 98.4 3.9E-07 1.3E-11 61.4 6.1 42 1-46 185-226 (373)
22 1z2l_A Allantoate amidohydrola 98.4 2.2E-07 7.7E-12 62.7 4.6 37 1-37 95-131 (423)
23 1fno_A Peptidase T; metallo pe 98.4 1.6E-07 5.6E-12 63.3 3.8 36 1-37 141-176 (417)
24 2wyr_A Cobalt-activated peptid 98.4 1.6E-07 5.6E-12 62.0 3.6 37 1-39 174-210 (332)
25 3gux_A Putative Zn-dependent e 98.4 5.5E-07 1.9E-11 60.6 6.0 37 1-39 130-166 (314)
26 3tc8_A Leucine aminopeptidase; 98.4 4.2E-07 1.4E-11 60.9 5.3 36 1-38 128-163 (309)
27 2rb7_A Peptidase, M20/M25/M40 98.4 1.9E-07 6.5E-12 62.4 3.4 39 1-39 101-144 (364)
28 3gb0_A Peptidase T; NP_980509. 98.4 3.7E-07 1.3E-11 60.6 4.6 38 1-39 109-146 (373)
29 3n5f_A L-carbamoylase, N-carba 98.3 7.4E-07 2.5E-11 60.1 5.4 37 1-37 91-127 (408)
30 3rza_A Tripeptidase; phosphory 98.3 4.8E-07 1.6E-11 60.8 4.4 38 1-39 130-167 (396)
31 1xmb_A IAA-amino acid hydrolas 98.3 8.4E-07 2.9E-11 60.2 5.0 38 1-39 118-155 (418)
32 3iib_A Peptidase M28; YP_92679 98.3 1.5E-06 5.1E-11 60.4 6.0 39 1-39 270-308 (444)
33 1y0y_A FRV operon protein FRVX 98.3 9.5E-07 3.2E-11 59.0 4.5 35 1-39 183-217 (353)
34 2fvg_A Endoglucanase; TM1049, 98.2 8.9E-07 3E-11 58.9 3.0 35 1-39 168-202 (340)
35 2afw_A Glutaminyl-peptide cycl 98.2 3.8E-06 1.3E-10 56.1 5.9 36 1-36 128-171 (329)
36 1ysj_A Protein YXEP; M20 famil 98.1 2.6E-06 9E-11 57.5 4.8 36 1-36 124-159 (404)
37 3io1_A Aminobenzoyl-glutamate 98.0 9.4E-06 3.2E-10 55.7 5.1 35 2-36 152-186 (445)
38 2f7v_A Aectylcitrulline deacet 98.0 8.2E-06 2.8E-10 54.3 4.3 31 1-38 107-138 (369)
39 2ek8_A Aminopeptidase; metallo 97.9 2E-05 7E-10 53.9 5.6 37 1-39 241-277 (421)
40 4f9u_A CG32412; alpha/beta hyd 97.8 4.9E-05 1.7E-09 50.1 5.6 35 3-37 106-145 (312)
41 1ylo_A Hypothetical protein SF 97.7 8.2E-05 2.8E-09 49.0 5.3 37 1-39 170-206 (348)
42 2qyv_A XAA-His dipeptidase; YP 97.6 3.8E-05 1.3E-09 52.9 3.3 35 1-39 117-151 (487)
43 4fai_A CG5976, isoform B; alph 97.6 5.5E-05 1.9E-09 50.7 3.8 36 3-38 132-170 (330)
44 3fed_A Glutamate carboxypeptid 97.5 0.00026 8.7E-09 52.4 7.0 38 2-39 346-386 (707)
45 3mru_A Aminoacyl-histidine dip 97.5 5E-05 1.7E-09 52.9 3.0 35 1-39 120-154 (490)
46 1vho_A Endoglucanase; structur 97.5 0.0001 3.5E-09 48.7 4.1 37 1-39 173-209 (346)
47 3kas_A Transferrin receptor pr 97.4 0.00027 9.1E-09 51.8 6.0 37 2-38 300-340 (640)
48 3pb6_X Glutaminyl-peptide cycl 97.4 0.00034 1.2E-08 47.5 5.5 36 1-36 135-175 (330)
49 3ram_A HMRA protein; two-domai 97.4 0.00015 5E-09 49.1 3.6 34 5-38 99-132 (394)
50 3kl9_A PEPA, glutamyl aminopep 97.3 0.0005 1.7E-08 46.8 5.5 44 1-48 183-226 (355)
51 4fuu_A Leucine aminopeptidase; 97.2 0.00063 2.1E-08 44.9 5.2 34 3-38 130-163 (309)
52 3cpx_A Aminopeptidase, M42 fam 97.0 0.00024 8.2E-09 47.1 2.1 31 1-39 166-196 (321)
53 2vpu_A TET3, 354AA long hypoth 96.7 0.0018 6.1E-08 44.1 4.3 40 2-47 187-226 (354)
54 3isx_A Endoglucanase; TM1050, 95.5 0.0051 1.7E-07 41.9 1.7 33 2-39 182-214 (343)
55 1y7e_A Probable M18-family ami 94.0 0.0086 2.9E-07 42.3 -0.3 35 2-39 257-291 (458)
56 2glj_A Probable M18-family ami 93.8 0.013 4.4E-07 41.5 0.3 34 2-39 263-296 (461)
57 2glf_A Probable M18-family ami 91.9 0.11 3.9E-06 36.6 3.0 32 3-39 252-283 (450)
58 3k9t_A Putative peptidase; str 86.9 0.49 1.7E-05 33.7 3.1 34 3-39 199-232 (435)
59 2ijz_A Probable M18-family ami 85.6 0.11 3.7E-06 36.4 -0.8 33 2-39 237-269 (428)
60 3vat_A Dnpep, aspartyl aminope 76.2 1.6 5.5E-05 31.3 2.5 37 2-39 287-327 (496)
61 1nxi_A Conserved hypothetical 63.5 14 0.00049 21.7 4.4 30 6-35 19-50 (132)
62 3qk7_A Transcriptional regulat 41.7 41 0.0014 20.5 4.1 31 6-36 197-227 (294)
63 4eme_A M18 aspartyl aminopepti 40.3 14 0.00046 27.1 1.9 14 26-39 371-385 (571)
64 3uug_A Multiple sugar-binding 40.0 22 0.00074 22.0 2.6 28 6-33 214-242 (330)
65 3jy6_A Transcriptional regulat 37.5 43 0.0015 20.1 3.7 30 6-35 191-220 (276)
66 3k9c_A Transcriptional regulat 36.9 47 0.0016 20.2 3.8 31 6-36 195-225 (289)
67 3dbi_A Sugar-binding transcrip 35.6 55 0.0019 20.4 4.0 31 6-36 252-282 (338)
68 3egc_A Putative ribose operon 34.0 46 0.0016 20.1 3.4 30 6-35 196-225 (291)
69 3hcw_A Maltose operon transcri 33.9 60 0.0021 19.7 4.0 30 6-35 202-231 (295)
70 3gyb_A Transcriptional regulat 33.3 43 0.0015 20.0 3.2 30 6-35 186-215 (280)
71 3bbl_A Regulatory protein of L 33.3 54 0.0019 19.8 3.7 30 6-35 198-227 (287)
72 3tb6_A Arabinose metabolism tr 32.7 46 0.0016 19.9 3.2 30 6-35 211-240 (298)
73 3k4h_A Putative transcriptiona 32.5 50 0.0017 19.8 3.4 30 6-35 202-231 (292)
74 3huu_A Transcription regulator 32.4 50 0.0017 20.2 3.4 30 6-35 212-241 (305)
75 3gv0_A Transcriptional regulat 32.0 53 0.0018 19.9 3.4 30 6-35 198-227 (288)
76 3clk_A Transcription regulator 31.6 53 0.0018 19.8 3.4 30 6-35 195-224 (290)
77 3e61_A Putative transcriptiona 31.1 51 0.0017 19.7 3.2 30 6-35 187-216 (277)
78 3kke_A LACI family transcripti 30.9 50 0.0017 20.2 3.2 30 6-35 207-236 (303)
79 2h0a_A TTHA0807, transcription 30.7 82 0.0028 18.6 4.1 30 6-35 190-219 (276)
80 3hs3_A Ribose operon repressor 29.8 55 0.0019 19.7 3.2 30 6-35 188-217 (277)
81 3jvd_A Transcriptional regulat 28.9 73 0.0025 20.0 3.8 31 6-36 241-271 (333)
82 2qu7_A Putative transcriptiona 28.9 71 0.0024 19.2 3.6 29 7-35 198-226 (288)
83 2rgy_A Transcriptional regulat 28.8 72 0.0025 19.3 3.7 30 6-35 199-228 (290)
84 3g85_A Transcriptional regulat 28.6 63 0.0021 19.4 3.3 27 6-32 198-224 (289)
85 3kjx_A Transcriptional regulat 28.6 57 0.0019 20.4 3.2 31 6-36 257-287 (344)
86 2k5l_A FEOA; structure, NESG, 28.2 66 0.0022 16.7 3.0 22 10-31 23-44 (81)
87 3brq_A HTH-type transcriptiona 28.2 73 0.0025 19.0 3.6 30 6-35 210-239 (296)
88 2h3j_A Hypothetical protein PA 27.3 54 0.0018 16.5 2.5 21 11-31 23-43 (75)
89 2fep_A Catabolite control prot 27.0 65 0.0022 19.5 3.2 30 6-35 205-234 (289)
90 3mhx_A Putative ferrous iron t 26.2 78 0.0027 16.5 3.2 23 10-32 26-48 (85)
91 1qpz_A PURA, protein (purine n 26.1 79 0.0027 19.7 3.6 30 6-35 248-277 (340)
92 1dbq_A Purine repressor; trans 25.8 85 0.0029 18.7 3.6 29 6-34 197-225 (289)
93 1t1v_A SH3BGRL3, SH3 domain-bi 25.6 26 0.00089 18.3 1.0 27 13-39 48-74 (93)
94 3h5o_A Transcriptional regulat 25.5 70 0.0024 19.9 3.2 30 6-35 249-278 (339)
95 2iks_A DNA-binding transcripti 25.3 60 0.0021 19.6 2.8 30 6-35 207-236 (293)
96 2o20_A Catabolite control prot 25.2 78 0.0027 19.6 3.4 30 6-35 249-278 (332)
97 3c3k_A Alanine racemase; struc 25.0 75 0.0026 19.1 3.2 29 6-34 194-222 (285)
98 2vk2_A YTFQ, ABC transporter p 24.5 69 0.0024 19.5 3.0 28 6-33 201-228 (306)
99 2pk8_A Uncharacterized protein 24.1 75 0.0026 18.4 2.8 15 9-23 23-37 (103)
100 3e19_A FEOA; transcriptional r 24.1 81 0.0028 16.0 3.0 22 10-31 26-47 (77)
101 3d8u_A PURR transcriptional re 24.0 87 0.003 18.5 3.3 28 6-33 191-218 (275)
102 3h5t_A Transcriptional regulat 23.8 82 0.0028 19.8 3.3 30 6-35 278-307 (366)
103 1wj5_A Hypothetical protein (r 23.6 33 0.0011 20.5 1.3 27 10-36 82-113 (120)
104 3ctp_A Periplasmic binding pro 23.5 88 0.003 19.4 3.4 30 6-35 241-270 (330)
105 4fe7_A Xylose operon regulator 23.0 1E+02 0.0036 20.0 3.8 32 6-37 213-244 (412)
106 3h75_A Periplasmic sugar-bindi 22.8 1E+02 0.0034 19.2 3.6 28 6-33 215-242 (350)
107 2lx9_A Ferrous iron transport 22.7 95 0.0033 16.4 3.2 22 10-31 21-42 (83)
108 2k4y_A FEOA-like protein; GFT 22.6 79 0.0027 16.6 2.7 22 11-32 27-48 (86)
109 2gcx_A FEOA, ferrous iron tran 22.4 60 0.002 16.4 2.1 22 10-31 21-42 (75)
110 3e3m_A Transcriptional regulat 22.0 81 0.0028 19.8 3.0 30 6-35 260-289 (355)
111 3cs3_A Sugar-binding transcrip 21.5 76 0.0026 19.0 2.7 28 6-33 187-214 (277)
112 3hyh_A Carbon catabolite-derep 21.4 86 0.0029 19.9 3.1 21 2-22 115-135 (275)
113 3bil_A Probable LACI-family tr 21.3 1.1E+02 0.0039 19.1 3.6 30 6-35 251-280 (348)
114 1gng_X Frattide, glycogen synt 21.1 36 0.0012 16.5 0.9 13 8-20 26-38 (39)
115 1jye_A Lactose operon represso 20.2 95 0.0032 19.5 3.1 30 6-35 248-277 (349)
116 1bh9_B TAFII28; histone fold, 20.1 75 0.0026 17.5 2.3 15 8-22 75-89 (89)
No 1
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=99.02 E-value=5.8e-10 Score=69.78 Aligned_cols=46 Identities=46% Similarity=0.725 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA 46 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~ 46 (58)
||+++++.++|++.|++.+..|+++|+++|++|||+|+..+...++
T Consensus 114 ~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~~Ga~~~~ 159 (198)
T 1q7l_A 114 MKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVPDEEVGGHQGMELFV 159 (198)
T ss_dssp THHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCGGGTSTTTHHHHT
T ss_pred chHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcccccCccccHHHHH
Confidence 8999999999999999999889999999999999998653333333
No 2
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae}
Probab=98.81 E-value=1.7e-08 Score=65.49 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS 48 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s 48 (58)
||+++++.++|++.|++.+..++++|.++|++|||+|+. .|...+..
T Consensus 104 ~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~-~Ga~~~~~ 150 (269)
T 4h2k_A 104 MKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAK-DGTIHVVE 150 (269)
T ss_dssp THHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCT-TSHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCcc-cCHHHHHH
Confidence 899999999999999999888889999999999999875 35544443
No 3
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A
Probab=98.80 E-value=1.8e-08 Score=65.15 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS 48 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s 48 (58)
||+++++.++|++.|++.+..++++|+++|++|||+|+. .|...+..
T Consensus 104 ~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~-~Ga~~~~~ 150 (268)
T 3t68_A 104 MKGSLACMIVAVERFIAEHPDHQGSIGFLITSDEEGPFI-NGTVRVVE 150 (268)
T ss_dssp THHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCTTSSSC-CHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCccCcc-cCHHHHHH
Confidence 899999999999999999888889999999999999885 35544443
No 4
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1
Probab=98.75 E-value=2.1e-08 Score=68.51 Aligned_cols=39 Identities=15% Similarity=-0.029 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++.++|++.|++.+..++++|.++|++|||+|+.
T Consensus 120 ~K~~~a~~l~a~~~l~~~~~~~~~~i~~i~~~~EE~g~~ 158 (470)
T 1lfw_A 120 DKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNEETNWV 158 (470)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCCSSEEEEEEESCTTTTCH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCEEEEEecCcccCCc
Confidence 899999999999999999988999999999999999874
No 5
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A*
Probab=98.73 E-value=2.5e-08 Score=68.26 Aligned_cols=46 Identities=9% Similarity=0.014 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN 47 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~ 47 (58)
||++++++++|++.|++.+.+++++|.++|++|||+|+. +...++.
T Consensus 137 ~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~-Ga~~~~~ 182 (479)
T 2zog_A 137 DKGPVAGWMNALEAYQKTGQEIPVNLRFCLEGMEESGSE-GLDELIF 182 (479)
T ss_dssp THHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTCT-THHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccccCCc-cHHHHHH
Confidence 899999999999999999988999999999999999874 4444443
No 6
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...
Probab=98.72 E-value=3.4e-08 Score=64.99 Aligned_cols=39 Identities=15% Similarity=-0.062 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++++++++.|++.+.+|+++|+++|+.|||.|..
T Consensus 118 ~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 156 (299)
T 1rtq_A 118 DASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEVGLR 156 (299)
T ss_dssp THHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSH
T ss_pred cHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCccCCch
Confidence 799999999999999999999999999999999999764
No 7
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1
Probab=98.71 E-value=5e-08 Score=65.41 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHH
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAA 45 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~ 45 (58)
||+++++.++|++.|++.+..|+++|.++|++|||+|+. .|...
T Consensus 104 ~k~~~aa~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~-~Ga~~ 147 (393)
T 1vgy_A 104 MKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDAL-DGTTK 147 (393)
T ss_dssp THHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCT-TSHHH
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCc-CCHHH
Confidence 799999999999999999888899999999999998764 34433
No 8
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A
Probab=98.68 E-value=4.5e-08 Score=64.07 Aligned_cols=39 Identities=10% Similarity=-0.049 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++++++++.|++.+.+|+++|+++|++|||.|..
T Consensus 98 ~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 136 (284)
T 1tkj_A 98 NGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLI 136 (284)
T ss_dssp THHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSH
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCCc
Confidence 799999999999999999989999999999999998764
No 9
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Probab=98.67 E-value=4.1e-08 Score=68.40 Aligned_cols=39 Identities=15% Similarity=0.070 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++.++|++.|++.+..++++|.++|++|||+|+.
T Consensus 139 ~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 177 (492)
T 3khx_A 139 DKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWK 177 (492)
T ss_dssp THHHHHHHHHHHHHHHHTTCCCSSEEEEEEECCTTCCCC
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccCCCc
Confidence 899999999999999999988899999999999999985
No 10
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Probab=98.66 E-value=5.4e-08 Score=65.26 Aligned_cols=46 Identities=17% Similarity=-0.008 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN 47 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~ 47 (58)
||+++++.++|++.|++.+..|+++|.++|++|||+|+. +...++.
T Consensus 120 ~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~-G~~~~~~ 165 (393)
T 1cg2_A 120 DKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSF-GSRDLIQ 165 (393)
T ss_dssp THHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTTT-TTHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCCCCCCCEEEEEEcccccCCc-cHHHHHH
Confidence 799999999999999999988878999999999999874 4444443
No 11
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}
Probab=98.64 E-value=6.2e-08 Score=66.69 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS 48 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s 48 (58)
||+++++.++|++.|++.+..|+++|.++|++|||+|+. +...++..
T Consensus 148 ~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~-g~~~~~~~ 194 (481)
T 2pok_A 148 DKGHITARLSALRKYMQHHDDLPVNISFIMEGAEESAST-DLDKYLEK 194 (481)
T ss_dssp THHHHHHHHHHHHHHHHTCSSCSSEEEEEEESCGGGTTT-THHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccCch-hHHHHHHH
Confidence 799999999999999998667889999999999999875 44455443
No 12
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}
Probab=98.63 E-value=6.8e-08 Score=66.78 Aligned_cols=46 Identities=7% Similarity=-0.021 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN 47 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~ 47 (58)
||+++++.++|++.|++.+..++++|.++|++|||+|+. +...++.
T Consensus 144 ~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~-g~~~~~~ 189 (485)
T 3dlj_A 144 NKGPVLAWINAVSAFRALEQDLPVNIKFIIEGMEEAGSV-ALEELVE 189 (485)
T ss_dssp THHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTTT-THHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCccEEEEEEcccccCCc-cHHHHHH
Confidence 899999999999999999988999999999999999875 4444443
No 13
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4
Probab=98.60 E-value=5.5e-08 Score=65.05 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||++++++++|++.|++.+..|+++|+++|++|||+|+.
T Consensus 187 ~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~G~~ 225 (349)
T 2gre_A 187 DKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEEIGYG 225 (349)
T ss_dssp THHHHHHHHHHHHHHHHHTCCCSEEEEEEEESCC----C
T ss_pred chHHHHHHHHHHHHHHhccCCCCceEEEEEECcccCCch
Confidence 799999999999999999988999999999999999874
No 14
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris}
Probab=98.59 E-value=5.6e-08 Score=65.68 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++.++|++.|++.+..++++|.++|++|||+|+.
T Consensus 145 ~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~ 183 (433)
T 3pfo_A 145 MKGGVSAMIFALDAIRTAGYAPDARVHVQTVTEEESTGN 183 (433)
T ss_dssp THHHHHHHHHHHHHHHHTTEEESSCEEEEEESCTTTTCH
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCccEEEEEEecCccCCh
Confidence 799999999999999999888889999999999999874
No 15
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp}
Probab=98.57 E-value=8.8e-08 Score=66.12 Aligned_cols=46 Identities=9% Similarity=-0.101 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS 48 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s 48 (58)
||+++++.+.|++.|++.+..++ +|.++|++|||+|+. +...++..
T Consensus 131 ~K~~~a~~l~a~~~l~~~~~~~~-~v~~~~~~~EE~g~~-g~~~~~~~ 176 (472)
T 3pfe_A 131 DGYSAYASLTAIRALEQQGLPYP-RCILIIEACEESGSY-DLPFYIEL 176 (472)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCE-EEEEEEESCGGGTST-THHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCCCC-cEEEEEEeCCCCCCh-hHHHHHHH
Confidence 89999999999999999998777 999999999999885 55555443
No 16
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis}
Probab=98.55 E-value=4.8e-08 Score=66.60 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ 37 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G 37 (58)
||++++++++|++.|++.+..|+++|.++|++|||+|
T Consensus 167 ~K~gva~~l~a~~~L~~~~~~~~~~i~~if~~~EE~g 203 (434)
T 3ife_A 167 DKAGLTEIMVAMNYLIHNPQIKHGKIRVAFTPDEEIG 203 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCBCCEEEEEESCGGGT
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECCcccC
Confidence 7999999999999999998889999999999999987
No 17
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A
Probab=98.55 E-value=2.7e-07 Score=60.71 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++.++|++.|++.+..++++|.++|++|||+|+.
T Consensus 101 ~k~g~~~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~ 139 (377)
T 3isz_A 101 MKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAK 139 (377)
T ss_dssp THHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCS
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCceEEEEEEcccccCcc
Confidence 799999999999999999888899999999999998764
No 18
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Probab=98.54 E-value=1e-07 Score=65.98 Aligned_cols=37 Identities=11% Similarity=-0.082 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ 37 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G 37 (58)
||++++++++|++.|++.+..|+++|.++|++|||++
T Consensus 125 ~k~gvaa~L~a~~~L~~~~~~~~~~v~lif~~dEE~~ 161 (474)
T 2v8h_A 125 GILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNAEGA 161 (474)
T ss_dssp THHHHHHHHHHHHHHHHHTCCCSSCEEEEECTTCSCS
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccCC
Confidence 7999999999999999999889999999999999984
No 19
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.48 E-value=2.1e-07 Score=61.97 Aligned_cols=37 Identities=5% Similarity=-0.084 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCC-CCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVT-QNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~-Gg~ 39 (58)
||+++++.++|++.|++.+ |+++|.++|++|||+ |+.
T Consensus 106 ~k~g~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~~g~~ 143 (356)
T 3ct9_A 106 AGASVVSLLQVFLQLCRTS--QNYNLIYLASCEEEVSGKE 143 (356)
T ss_dssp THHHHHHHHHHHHHHTTSC--CSSEEEEEEECCGGGTCTT
T ss_pred chHHHHHHHHHHHHHHhcC--CCCCEEEEEEeCcccCCcc
Confidence 7999999999999999987 789999999999998 543
No 20
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum}
Probab=98.47 E-value=3.6e-07 Score=60.54 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHH
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLA 44 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~ 44 (58)
||+++++.++|++.|++. ..++++|.++|++|||+|+...|..
T Consensus 104 ~K~~~a~~l~a~~~l~~~-~~~~~~v~~~~~~~EE~g~~~~G~~ 146 (369)
T 3tx8_A 104 MKSGLAVYLHTFATLATS-TELKHDLTLIAYECEEVADHLNGLG 146 (369)
T ss_dssp THHHHHHHHHHHHHHTSC-TTCCSEEEEEEECCCSSCTTSCHHH
T ss_pred chHHHHHHHHHHHHHHhh-cCCCccEEEEEEeccccCcccccHH
Confidence 899999999999999875 4678999999999999987422443
No 21
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4
Probab=98.45 E-value=3.9e-07 Score=61.44 Aligned_cols=42 Identities=7% Similarity=-0.077 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA 46 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~ 46 (58)
||+++++.++|++.|++.+ |+++|.++|+.|||+|+. |...+
T Consensus 185 ~k~g~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~G~~--G~~~~ 226 (373)
T 1vhe_A 185 NRIGCAIAIDVLRNLQNTD--HPNIVYGVGTVQEEVGLR--GAKTA 226 (373)
T ss_dssp HHHHHHHHHHHHHHHHTSC--CSSEEEEEEESCCTTTSH--HHHHH
T ss_pred cHHHHHHHHHHHHHHhhcC--CCceEEEEEECCcccChh--hHHHH
Confidence 7999999999999999875 669999999999999885 44433
No 22
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A
Probab=98.43 E-value=2.2e-07 Score=62.65 Aligned_cols=37 Identities=11% Similarity=-0.075 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ 37 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G 37 (58)
||+++++.++|++.|++.+..|+++|.++|++|||++
T Consensus 95 ~k~g~a~~l~a~~~l~~~~~~~~~~v~~i~~~~EE~~ 131 (423)
T 1z2l_A 95 GQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGS 131 (423)
T ss_dssp THHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSSCC
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCcccc
Confidence 6899999999999999999889999999999999985
No 23
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A
Probab=98.42 E-value=1.6e-07 Score=63.33 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ 37 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G 37 (58)
||++++++++|++.|++.+ .|+++|+++|++|||+|
T Consensus 141 ~K~g~a~~l~a~~~l~~~~-~~~~~v~~~~~~~EE~g 176 (417)
T 1fno_A 141 DKAGVAEIMTALAVLKGNP-IPHGDIKVAFTPDEEVG 176 (417)
T ss_dssp HHHHHHHHHHHHHHHHSSS-CCCCCEEEEEESCGGGT
T ss_pred cHHhHHHHHHHHHHHHhCC-CCCCcEEEEEEeccccC
Confidence 7999999999999999998 78899999999999986
No 24
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A
Probab=98.42 E-value=1.6e-07 Score=62.03 Aligned_cols=37 Identities=8% Similarity=0.132 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++.++|++.|++.+ ++++|.++|+.|||+|+.
T Consensus 174 ~k~g~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~G~~ 210 (332)
T 2wyr_A 174 DRFGVVALIEAIKDLVDHE--LEGKVIFAFTVQEEVGLK 210 (332)
T ss_dssp HHHHHHHHHHHHHTTTTSC--CSSEEEEEEESCGGGTSH
T ss_pred cHHHHHHHHHHHHHHhhcC--CCceEEEEEECccccCcc
Confidence 7999999999999998876 668999999999999875
No 25
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=98.41 E-value=5.5e-07 Score=60.64 Aligned_cols=37 Identities=16% Similarity=-0.071 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||++++++|++++.|.+.+ |+++|.++|+.+||.|.+
T Consensus 130 ~~sGva~~Le~ar~l~~~~--~~~~i~fv~~~~EE~Gl~ 166 (314)
T 3gux_A 130 GASGVGVLLEIARQIQKEQ--PALGIDIVFFDSEDYGIP 166 (314)
T ss_dssp CHHHHHHHHHHHHHHHHSC--CSSEEEEEEECSCCC---
T ss_pred cHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCcccccc
Confidence 6899999999999999885 899999999999999873
No 26
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}
Probab=98.40 E-value=4.2e-07 Score=60.89 Aligned_cols=36 Identities=14% Similarity=-0.078 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCC
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQN 38 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg 38 (58)
||++++++|++++.|.+.+ |+++|.++|+.+||.|.
T Consensus 128 ~~sGva~~Le~ar~l~~~~--~~~~i~f~~~~~EE~Gl 163 (309)
T 3tc8_A 128 GGSGVGALLEIARQIGQKA--PGIGIDIIFFDAEDYGT 163 (309)
T ss_dssp THHHHHHHHHHHHHHHHSC--CSSEEEEEEECSCSCSC
T ss_pred chHhHHHHHHHHHHHHhCC--CCCcEEEEEECcccccc
Confidence 6899999999999999885 89999999999999987
No 27
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp}
Probab=98.39 E-value=1.9e-07 Score=62.38 Aligned_cols=39 Identities=10% Similarity=-0.057 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCCC---Cce--EEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKF---KRT--IHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p---~r~--I~l~f~~DEE~Gg~ 39 (58)
||+++++.++|++.|++.+..+ +++ |.++|++|||+||.
T Consensus 101 ~k~~~a~~l~a~~~l~~~~~~~~~~~g~~~v~~~~~~~EE~~g~ 144 (364)
T 2rb7_A 101 DKYAVALGLVMFRDRLNALKAAGRSQKDMALGLLITGDEEIGGM 144 (364)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCGGGTST
T ss_pred ccHHHHHHHHHHHHHHHhCCCCcccCCCccEEEEEEeccccCch
Confidence 7999999999999999987666 457 99999999998765
No 28
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}
Probab=98.38 E-value=3.7e-07 Score=60.60 Aligned_cols=38 Identities=18% Similarity=0.024 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++.++|++.|++.+. |+++|.++|++|||+|+.
T Consensus 109 ~k~g~a~~l~a~~~l~~~~~-~~~~v~~~~~~~EE~g~~ 146 (373)
T 3gb0_A 109 DKAGLASMFEAIRVLKEKNI-PHGTIEFIITVGEESGLV 146 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CCCCEEEEEESCGGGTSH
T ss_pred cHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccccCch
Confidence 69999999999999999885 789999999999998763
No 29
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus}
Probab=98.33 E-value=7.4e-07 Score=60.08 Aligned_cols=37 Identities=11% Similarity=-0.024 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ 37 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G 37 (58)
||+++++.+++++.|++.+..|+++|.++|++|||.+
T Consensus 91 ~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~~ 127 (408)
T 3n5f_A 91 GPLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGA 127 (408)
T ss_dssp THHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCSSCT
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCcccc
Confidence 7999999999999999999889999999999999964
No 30
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp}
Probab=98.33 E-value=4.8e-07 Score=60.82 Aligned_cols=38 Identities=13% Similarity=-0.034 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++.++|++.|++.+. |+++|.++|++|||+|+.
T Consensus 130 ~k~g~a~~l~a~~~l~~~~~-~~~~v~~~~~~~EE~g~~ 167 (396)
T 3rza_A 130 DKAGLAAMLEVLQVIKEQQI-PHGQIQFVITVGEESGLI 167 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-CCCCEEEEEESCGGGTSH
T ss_pred cHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEcccccccH
Confidence 69999999999999999875 778999999999999764
No 31
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A
Probab=98.30 E-value=8.4e-07 Score=60.20 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++.++|++.|++.+..++++|.++|++||| |+.
T Consensus 118 ~d~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE-g~~ 155 (418)
T 1xmb_A 118 HDGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEE-GLS 155 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTT-TTC
T ss_pred chHHHHHHHHHHHHHHhccccCCceEEEEEecccc-ccc
Confidence 47899999999999999988899999999999999 763
No 32
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=98.28 E-value=1.5e-06 Score=60.39 Aligned_cols=39 Identities=13% Similarity=-0.060 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
++++++++|++++.|.+.+++|+|+|+++|+.+||.|..
T Consensus 270 ~~sG~a~~le~a~~l~~~~~~~~~~i~f~~~~~EE~gl~ 308 (444)
T 3iib_A 270 DGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEELGLL 308 (444)
T ss_dssp THHHHHHHHHHHHHHHTSSSCCSEEEEEEEESCGGGTSH
T ss_pred chHHHHHHHHHHHHHHhcCCCCCCeEEEEEECCcccCCc
Confidence 578999999999999999999999999999999998753
No 33
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A
Probab=98.26 E-value=9.5e-07 Score=58.99 Aligned_cols=35 Identities=9% Similarity=-0.075 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||++++++++|++.|++ |+++|+++|+.|||+|+.
T Consensus 183 ~k~g~a~~l~a~~~l~~----~~~~i~~~~~~~EE~g~~ 217 (353)
T 1y0y_A 183 DRIAVYTILEVAKQLKD----AKADVYFVATVQEEVGLR 217 (353)
T ss_dssp HHHHHHHHHHHHHHCCS----CSSEEEEEEESCCTTTSH
T ss_pred cHHHHHHHHHHHHHhhc----CCCeEEEEEECCcccchh
Confidence 79999999999999876 778999999999999875
No 34
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Probab=98.18 E-value=8.9e-07 Score=58.85 Aligned_cols=35 Identities=6% Similarity=-0.090 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++.++|++.|+ .|+++|+++|+.|||+|+.
T Consensus 168 ~k~g~a~~l~a~~~l~----~~~~~i~~~~~~~EE~G~~ 202 (340)
T 2fvg_A 168 DRAGCSVLIDVLESGV----SPAYDTYFVFTVQEETGLR 202 (340)
T ss_dssp HHHHHHHHHHHHHTCC----CCSEEEEEEEECCCC----
T ss_pred cHHHHHHHHHHHHHhh----ccCCcEEEEEEcccccchh
Confidence 7999999999999987 4789999999999999875
No 35
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...
Probab=98.17 E-value=3.8e-06 Score=56.13 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHHHHHc--------CCCCCceEEEEeeCCCCC
Q psy3109 1 MKCVGIQYLETIRRYIAE--------GKKFKRTIHVSFVPGPVT 36 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~--------g~~p~r~I~l~f~~DEE~ 36 (58)
||+++++++++++.|.+. |.+|+++|.++|+.+||.
T Consensus 128 ~~sGva~~le~ar~l~~~~~~~~~~~g~~~~~~i~~~~~~~EE~ 171 (329)
T 2afw_A 128 SAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEA 171 (329)
T ss_dssp THHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEESCCSC
T ss_pred chhhHHHHHHHHHHHHHHHhhhcccccCCCCccEEEEEecCccc
Confidence 689999999999999886 568999999999999997
No 36
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1
Probab=98.15 E-value=2.6e-06 Score=57.52 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCC
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVT 36 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~ 36 (58)
||+++++.++|++.|++.+..|+++|.++|++|||+
T Consensus 124 ~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~ 159 (404)
T 1ysj_A 124 HDFHTASIIGTAMLLNQRRAELKGTVRFIFQPAEEI 159 (404)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTT
T ss_pred ChHHHHHHHHHHHHHHhccccCCceEEEEEeccccc
Confidence 589999999999999998888999999999999998
No 37
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}
Probab=97.99 E-value=9.4e-06 Score=55.70 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCC
Q psy3109 2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVT 36 (58)
Q Consensus 2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~ 36 (58)
|+.+++.+.|++.|++.+..++++|.++|++|||.
T Consensus 152 d~~~a~~l~aa~~L~~~~~~~~g~v~l~f~p~EE~ 186 (445)
T 3io1_A 152 DGHTAIGLGLAHVLKQYAAQLNGVIKLIFQPAEEG 186 (445)
T ss_dssp CTHHHHHHHHHHHHHHTGGGCCSEEEEEEESCTTT
T ss_pred hHHHHHHHHHHHHHHhCcCcCCceEEEEEeccccc
Confidence 56789999999999998888999999999999994
No 38
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A
Probab=97.95 E-value=8.2e-06 Score=54.30 Aligned_cols=31 Identities=6% Similarity=0.003 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCC-CC
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVT-QN 38 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~-Gg 38 (58)
||+++++.++|++. |+++|.++|++|||+ |+
T Consensus 107 ~k~g~a~~l~a~~~-------~~~~v~~~~~~~EE~~g~ 138 (369)
T 2f7v_A 107 IKGAAAALVAAANA-------GDGDAAFLFSSDEEANDP 138 (369)
T ss_dssp THHHHHHHHHHHTT-------CCCCEEEEEESCTTSSSC
T ss_pred ccHHHHHHHHHHhc-------CCCCEEEEEEeCcccCCC
Confidence 89999999999986 778999999999999 44
No 39
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=97.90 E-value=2e-05 Score=53.94 Aligned_cols=37 Identities=11% Similarity=-0.177 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
+|+++++++++++.|.+. .|+|+|+++++.+||.|..
T Consensus 241 ~~~G~a~~le~~~~l~~~--~~~~~i~~~~~~~EE~g~~ 277 (421)
T 2ek8_A 241 DASGVAVTLELARVMSKL--KTDTELRFITFGAEENGLI 277 (421)
T ss_dssp THHHHHHHHHHHHHHTTS--CCSSEEEEEEESSSTTTSH
T ss_pred CcHhHHHHHHHHHHHhcc--CCCceEEEEEECCccccch
Confidence 689999999999999884 6889999999999998653
No 40
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=97.77 E-value=4.9e-05 Score=50.07 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHc-----CCCCCceEEEEeeCCCCCC
Q psy3109 3 CVGIQYLETIRRYIAE-----GKKFKRTIHVSFVPGPVTQ 37 (58)
Q Consensus 3 ~~~~~~leAl~~L~~~-----g~~p~r~I~l~f~~DEE~G 37 (58)
++++++||++|.|.+. +.+|+|+|.++|+..||.|
T Consensus 106 SGvA~lLElAR~l~~~~~~~~~~~p~~tI~fv~fdaEE~G 145 (312)
T 4f9u_A 106 VPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDGEEAF 145 (312)
T ss_dssp HHHHHHHHHHHHTHHHHTTGGGSCSSEEEEEEEESCCSCS
T ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCceEEEEEecCcccc
Confidence 6899999999999753 5679999999999999987
No 41
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4
Probab=97.66 E-value=8.2e-05 Score=48.99 Aligned_cols=37 Identities=3% Similarity=-0.058 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++++++++.+.+.+ +..+++++|+.+||+|+.
T Consensus 170 ~k~g~aa~l~al~~l~~~~--~~~~~~~~~t~~EEvG~~ 206 (348)
T 1ylo_A 170 DRLSCYLLVTLLRELHDAE--LPAEVWLVASSSEEVGLR 206 (348)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CSSEEEEEEESCCTTSSH
T ss_pred cHHHHHHHHHHHHHhhhcC--CCceEEEEEEcccccchh
Confidence 6899999999999998764 668999999999999985
No 42
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT}
Probab=97.61 E-value=3.8e-05 Score=52.91 Aligned_cols=35 Identities=9% Similarity=-0.092 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++++++++. .+ .|+++|+++|++|||+|+.
T Consensus 117 ~k~g~a~~l~a~~~---~~-~~~~~v~~~~~~~EE~g~~ 151 (487)
T 2qyv_A 117 NGIGMASALAVLES---ND-IAHPELEVLLTMTEERGME 151 (487)
T ss_dssp HHHHHHHHHHHHHC---SS-SCCSSEEEEEESCTTTTCH
T ss_pred CHHHHHHHHHHHHh---CC-CCCCCEEEEEEeccccCCH
Confidence 68999999999873 34 3778999999999998764
No 43
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*
Probab=97.59 E-value=5.5e-05 Score=50.71 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHH---cCCCCCceEEEEeeCCCCCCC
Q psy3109 3 CVGIQYLETIRRYIA---EGKKFKRTIHVSFVPGPVTQN 38 (58)
Q Consensus 3 ~~~~~~leAl~~L~~---~g~~p~r~I~l~f~~DEE~Gg 38 (58)
++++++||++|.|.+ .+.+|+|+|.++|+..||.|-
T Consensus 132 sG~A~lLE~Ar~l~~~~~~~~~p~rtI~fv~fdgEE~Gl 170 (330)
T 4fai_A 132 VPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFE 170 (330)
T ss_dssp HHHHHHHHHHHHTHHHHGGGGTSSEEEEEEEESCCSCSS
T ss_pred HhHHHHHHHHHHHHHhhhccCCCCccEEEEEeccccccc
Confidence 588999999999865 467899999999999999874
No 44
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=97.54 E-value=0.00026 Score=52.42 Aligned_cols=38 Identities=16% Similarity=-0.035 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHH---cCCCCCceEEEEeeCCCCCCCh
Q psy3109 2 KCVGIQYLETIRRYIA---EGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 2 K~~~~~~leAl~~L~~---~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
.++++++||++|.|.+ .|++|+|+|.++++.+||.|-.
T Consensus 346 ~sG~a~lLe~ar~l~~~~~~g~~p~r~I~f~~~~~EE~Gl~ 386 (707)
T 3fed_A 346 TSGVAVLQEIARSFGKLMSKGWRPRRTIIFASWDAEEFGLL 386 (707)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSH
T ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCEEEEEeCCccccch
Confidence 5789999999998876 6889999999999999998653
No 45
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus}
Probab=97.53 E-value=5e-05 Score=52.91 Aligned_cols=35 Identities=9% Similarity=-0.106 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++++++++ ....|.++|.++|++|||+|+.
T Consensus 120 ~k~g~a~~l~~l~----~~~~~~~~v~~~~~~~EE~g~~ 154 (490)
T 3mru_A 120 NGIGMASCLAVLA----SKEIKHGPIEVLLTIDEEAGMT 154 (490)
T ss_dssp HHTTHHHHHHHHH----CSSCCCCSEEEEEESCSSSTTG
T ss_pred CHHHHHHHHHHHH----hCCCCCCCEEEEEEcccccccH
Confidence 6888998888763 3345778999999999999864
No 46
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Probab=97.50 E-value=0.0001 Score=48.66 Aligned_cols=37 Identities=8% Similarity=-0.102 Sum_probs=32.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||+++++++++++.|++.+ +..+++++|+.+||+|+.
T Consensus 173 ~r~g~aa~l~al~~l~~~~--~~~~~~~~~t~~EEvG~~ 209 (346)
T 1vho_A 173 NRASCGVLVKVLEFLKRYD--HPWDVYVVFSVQEETGCL 209 (346)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CSSEEEEEEECTTSSSHH
T ss_pred cHHHHHHHHHHHHHhhhcC--CCceEEEEEECCcccchh
Confidence 5889999999999998765 557999999999999875
No 47
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=97.44 E-value=0.00027 Score=51.77 Aligned_cols=37 Identities=11% Similarity=-0.042 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHc----CCCCCceEEEEeeCCCCCCC
Q psy3109 2 KCVGIQYLETIRRYIAE----GKKFKRTIHVSFVPGPVTQN 38 (58)
Q Consensus 2 K~~~~~~leAl~~L~~~----g~~p~r~I~l~f~~DEE~Gg 38 (58)
.+++++++|++|.|.+. |++|+|+|.++++.+||.|-
T Consensus 300 ~sG~a~lLe~ar~l~~~~~~~g~~p~r~I~f~~~~~EE~gl 340 (640)
T 3kas_A 300 GVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGS 340 (640)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCCSEEEEEEEESSGGGTS
T ss_pred cHHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEECCcccCc
Confidence 57899999999999864 88999999999999999765
No 48
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*
Probab=97.37 E-value=0.00034 Score=47.46 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHHHHc-----CCCCCceEEEEeeCCCCC
Q psy3109 1 MKCVGIQYLETIRRYIAE-----GKKFKRTIHVSFVPGPVT 36 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~-----g~~p~r~I~l~f~~DEE~ 36 (58)
+.++++++||++|.|.+. +.+|+++|.++|+.+||.
T Consensus 135 ~asGva~lLe~ar~l~~~~~~~~~~~~~~~i~fv~~~~EE~ 175 (330)
T 3pb6_X 135 SAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEA 175 (330)
T ss_dssp THHHHHHHHHHHHHTHHHHHHHHHTTCSEEEEEEEESCCSC
T ss_pred ChHHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEEcCccc
Confidence 368999999999999874 468999999999999996
No 49
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus}
Probab=97.36 E-value=0.00015 Score=49.06 Aligned_cols=34 Identities=9% Similarity=-0.080 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCC
Q psy3109 5 GIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQN 38 (58)
Q Consensus 5 ~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg 38 (58)
.++.+.|++.|++.+..++++|.++|++|||+|+
T Consensus 99 ~a~~l~aa~~L~~~~~~~~g~v~~~f~~~EE~~~ 132 (394)
T 3ram_A 99 GTASVLGAIGLKQVIDQIGGKVVVLGCPAEEGGE 132 (394)
T ss_dssp HHHHHHHHHHHHTTHHHHCSEEEEEECCCTTCCT
T ss_pred HHHHHHHHHHHHHhHhhCCceEEEEEECCccCCC
Confidence 4567888899988777788999999999999874
No 50
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=97.27 E-value=0.0005 Score=46.84 Aligned_cols=44 Identities=7% Similarity=-0.033 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS 48 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s 48 (58)
+|.+++.++++++.|++. .|+.+++++|+.-||+|+. |...+.+
T Consensus 183 nr~g~~~~l~~l~~l~~~--~~~~~v~~~ft~qEEvG~~--Ga~~a~~ 226 (355)
T 3kl9_A 183 NRYGVLMVSELAEALSGQ--KLGNELYLGSNVQEEVGLR--GAHTSTT 226 (355)
T ss_dssp HHHHHHHHHHHHHHHSSC--CCSSEEEEEEESCCTTTSH--HHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhc--CCCceEEEEEECccccCcc--hhHHHHh
Confidence 378899999999998765 5789999999999999985 4444433
No 51
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=97.20 E-value=0.00063 Score=44.90 Aligned_cols=34 Identities=15% Similarity=-0.005 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCC
Q psy3109 3 CVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQN 38 (58)
Q Consensus 3 ~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg 38 (58)
++++.+||++|.|.+. +|+|+|.++|+..||.|-
T Consensus 130 SG~a~lLE~ar~l~~~--~~~~~i~~~~~~~EE~Gl 163 (309)
T 4fuu_A 130 SGVGALLEIARLVNQQ--QPELGIDIIFLDAEDYGT 163 (309)
T ss_dssp HHHHHHHHHHHHHHHS--CCSSEEEEEEECSSSCCC
T ss_pred hhHHHHHHHHHHHhhc--CCCCceEEEeecccccCc
Confidence 6899999999999885 689999999999999874
No 52
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406}
Probab=97.05 E-value=0.00024 Score=47.13 Aligned_cols=31 Identities=10% Similarity=-0.147 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
||++++++++|++.++ + ++++|+.|||+|+.
T Consensus 166 ~k~G~aa~l~al~~l~-----~---i~~~~t~~EEvG~~ 196 (321)
T 3cpx_A 166 DRLGVWTALELAKTLE-----H---GIIAFTCWEEHGGG 196 (321)
T ss_dssp HHHHHHHHHHHTTTCC-----S---EEEEEESSTTTTCC
T ss_pred CHHHHHHHHHHHHHhc-----C---cEEEEECCccCchh
Confidence 6899999999998765 2 99999999999985
No 53
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2wzn_A 2pe3_A
Probab=96.72 E-value=0.0018 Score=44.14 Aligned_cols=40 Identities=13% Similarity=0.013 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109 2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN 47 (58)
Q Consensus 2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~ 47 (58)
|.+++.++++++.|++ |+.+++++|+.-||+|+. |...++
T Consensus 187 r~g~~~~l~~l~~l~~----~~~~v~~~ft~qEEVG~~--ga~~aa 226 (354)
T 2vpu_A 187 RICLYAMIEAARQLGD----HEADIYIVGSVQEEVGLR--GARVAS 226 (354)
T ss_dssp HHHHHHHHHHHHHCCC----CSSEEEEEECSCCTTTSH--HHHHHH
T ss_pred HHHHHHHHHHHHHhhc----CCCeEEEEEECCcccCcc--chhhhh
Confidence 6788888999887754 778999999999999985 444433
No 54
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}
Probab=95.50 E-value=0.0051 Score=41.88 Aligned_cols=33 Identities=12% Similarity=-0.039 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
|.+++.++++++.++. +.+++++|+.-||+|+.
T Consensus 182 R~g~~~~l~~l~~l~~-----~~~~~~~ft~qEEVG~~ 214 (343)
T 3isx_A 182 RIGCAVIVEVFKRIKP-----AVTLYGVFSVQEEVGLV 214 (343)
T ss_dssp HHHHHHHHHHHHHCCC-----SSEEEEEEECCCCTTSC
T ss_pred HHHHHHHHHHHHhccC-----CCeEEEEEECCcccCch
Confidence 6788888888887642 57999999999999985
No 55
>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4
Probab=93.98 E-value=0.0086 Score=42.30 Aligned_cols=35 Identities=17% Similarity=0.019 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
|.++...++|++.+.+ .|..+++++|+.-||+|+.
T Consensus 257 r~~~~~~l~al~~~~~---~~~~~~~~~~~d~EEVGs~ 291 (458)
T 1y7e_A 257 KICVFTSLESIFDLEE---TPNKTAICFLVDKEEIGST 291 (458)
T ss_dssp HHHHHHHHHHHSSSSC---CCSSCEECCCBCSTTC---
T ss_pred HHHHHHHHHHHHhhhc---cCCceEEEEEEcccccCcc
Confidence 5566777777665432 4778999999999999986
No 56
>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum}
Probab=93.80 E-value=0.013 Score=41.45 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
+.++...++|++.+. .|..+++++|+.-||+|+.
T Consensus 263 r~~~~~~l~al~~~~----~~~~~~~~~~~d~EEVGs~ 296 (461)
T 2glj_A 263 RICAYTSFEAMLEMK----NAKKTCITILVDKEEVGSI 296 (461)
T ss_dssp HHHHHHHHHHHHTCC----SCSSCEEEEEECCGGGTCC
T ss_pred HHHHHHHHHHHHhhc----cCCCeEEEEEEccCCCCCc
Confidence 456666666665542 5778999999999999986
No 57
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima}
Probab=91.90 E-value=0.11 Score=36.56 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 3 CVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 3 ~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
.++...++|++.+ .+..+++++++--||+|+.
T Consensus 252 ~~~~~~l~al~~~-----~~~~~~~~~~~d~EEVGs~ 283 (450)
T 2glf_A 252 ICAYTALRALLSA-----NPEKSIGVIFFDKEEIGSD 283 (450)
T ss_dssp HHHHHHHHHHHHC-----CCSSCEEEEEESCGGGTSC
T ss_pred HHHHHHHHHHHhc-----CCCceEEEEEEcccccCCc
Confidence 4455556665543 4678999999999999986
No 58
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=86.91 E-value=0.49 Score=33.71 Aligned_cols=34 Identities=12% Similarity=-0.054 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 3 CVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 3 ~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
++++..++..+.|++ ..|+++++++|++ |.+|+.
T Consensus 199 SG~a~lleLar~l~~--~~~~~t~rFvf~p-g~iGS~ 232 (435)
T 3k9t_A 199 SGVALITFIAKALSK--LKTKYSYRFLFAP-ETIGSI 232 (435)
T ss_dssp HHHHHHHHHHHHHTT--SCCSSEEEEEEEC-TTHHHH
T ss_pred hHHHHHHHHHHHHhc--CCCCceEEEEEcC-ccHHHH
Confidence 578888888898876 3588999999997 554443
No 59
>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa}
Probab=85.58 E-value=0.11 Score=36.36 Aligned_cols=33 Identities=12% Similarity=-0.175 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
|.++...++|++.+. .+..+++++| .-||+|+.
T Consensus 237 r~~~~~~l~al~~~~----~~~~~v~~~f-d~EEVGs~ 269 (428)
T 2ijz_A 237 LLSCHAGLEALLNAE----GDENCILVCT-DHEEVGSC 269 (428)
T ss_dssp SSTTTTTTTHHHHTT----SCSSSCEEEE-CBSCTTTT
T ss_pred HHHHHHHHHHHHhcc----cCCceEEEEE-eccccCcc
Confidence 455666777777664 3556787777 67999986
No 60
>3vat_A Dnpep, aspartyl aminopeptidase; alpha-beta-alpha sandwich, binuclea center, M18 peptidase, MH CLAN, tetrahedral aminopeptidase, hydrolase; 2.10A {Bos taurus} PDB: 3var_A 3l6s_A* 4dyo_A*
Probab=76.20 E-value=1.6 Score=31.30 Aligned_cols=37 Identities=5% Similarity=-0.033 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHcC----CCCCceEEEEeeCCCCCCCh
Q psy3109 2 KCVGIQYLETIRRYIAEG----KKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 2 K~~~~~~leAl~~L~~~g----~~p~r~I~l~f~~DEE~Gg~ 39 (58)
+.++...++|++.+.+.. ..+..++ ++++--||+|+.
T Consensus 287 r~~~~~~leaL~~~~~~~~~~~~~~~~~v-~v~~dqEEVGs~ 327 (496)
T 3vat_A 287 LHSCFCALQALIDSCSAPASLAADPHVRM-IALYDNEEVGSE 327 (496)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHCCSEEE-EEEESCGGGTSC
T ss_pred HHHHHHHHHHHHhhhccccccccCCCcEE-EEEEccCCcCCC
Confidence 345667777777664210 0234455 888888999985
No 61
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=63.51 E-value=14 Score=21.68 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCCCC--ceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFK--RTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~--r~I~l~f~~DEE 35 (58)
..--+.++.|++.|..|. |+|...|..+.|
T Consensus 19 ~~n~~Vl~~L~e~Gddl~~~r~IEH~~~F~de 50 (132)
T 1nxi_A 19 EETRDIIQALLEDGSDPDALYEIEHHLFAEDF 50 (132)
T ss_dssp HHHHHHHHHHHHHTCCTTSCEEEEEEEEESCH
T ss_pred HHHHHHHHHHHhCCCCcCCCeEEEEEEEeCCH
Confidence 444577899999998774 899977776655
No 62
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=41.66 E-value=41 Score=20.52 Aligned_cols=31 Identities=10% Similarity=-0.170 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPVT 36 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~ 36 (58)
.+++.++++|++.|.+.+.+|.++-+-|.+.
T Consensus 197 ~~A~g~~~al~~~G~~vP~di~vig~D~~~~ 227 (294)
T 3qk7_A 197 MLGDGVASALDKAGLLGGEGISLIAYDGLPD 227 (294)
T ss_dssp HHHHHHHHHHHHTTCSSTTSCEEEEETCSCT
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEeecCccH
Confidence 4567888999999998778888776666553
No 63
>4eme_A M18 aspartyl aminopeptidase; dnpep/M18/aminopeptidase, protease, hydrolase; 2.60A {Plasmodium falciparum 3D7}
Probab=40.30 E-value=14 Score=27.11 Aligned_cols=14 Identities=0% Similarity=-0.389 Sum_probs=9.6
Q ss_pred EE-EEeeCCCCCCCh
Q psy3109 26 IH-VSFVPGPVTQNE 39 (58)
Q Consensus 26 I~-l~f~~DEE~Gg~ 39 (58)
+. ++++-.||+||.
T Consensus 371 i~v~~lfD~EEIGS~ 385 (571)
T 4eme_A 371 LYISIGYDHEEIGSL 385 (571)
T ss_dssp EEEEEEESCGGGTSC
T ss_pred eeEEEEecccccCCC
Confidence 44 455555999996
No 64
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=40.04 E-value=22 Score=21.98 Aligned_cols=28 Identities=14% Similarity=-0.051 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCCCCce-EEEEeeCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRT-IHVSFVPG 33 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~-I~l~f~~D 33 (58)
.+++.++++|++.|.+.+.+ +.++.+.|
T Consensus 214 ~~A~g~~~al~~~g~~vP~d~i~vv~g~D 242 (330)
T 3uug_A 214 GLSIGIISSLKGVGYGTKDQPLPVVSGQD 242 (330)
T ss_dssp HHHHHHHHHHHHTTCSSSSSCCCEECCSS
T ss_pred chHHHHHHHHHHcCCCCCCCceEEEEecC
Confidence 45678889999999887666 77665555
No 65
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=37.46 E-value=43 Score=20.09 Aligned_cols=30 Identities=17% Similarity=0.043 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|++.|.+.+.+|.++-+-|-+
T Consensus 191 ~~a~g~~~al~~~g~~vP~di~vig~d~~~ 220 (276)
T 3jy6_A 191 RWLLEFFPNLIISGLIDNQTVTATGFADTD 220 (276)
T ss_dssp HHHHHHSHHHHHSSSCCSSSEEEEEBCCCS
T ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEECChH
Confidence 456778899999999877888776665544
No 66
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=36.91 E-value=47 Score=20.18 Aligned_cols=31 Identities=10% Similarity=-0.008 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPVT 36 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~ 36 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+.
T Consensus 195 ~~A~g~~~al~~~g~~vP~di~vig~D~~~~ 225 (289)
T 3k9c_A 195 RCATGVLDLLVRSGRDVPADISVVGYDDSRL 225 (289)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEECCHHH
Confidence 4567888999999998778887766555443
No 67
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=35.62 E-value=55 Score=20.38 Aligned_cols=31 Identities=6% Similarity=-0.014 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPVT 36 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~ 36 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+.
T Consensus 252 ~~A~g~~~al~~~G~~vP~di~vvg~D~~~~ 282 (338)
T 3dbi_A 252 DMAIGAMKALHERGVAVPEQVSVIGFDDIAI 282 (338)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEESCCTT
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEECChHH
Confidence 4567788999999998778888776666553
No 68
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=34.04 E-value=46 Score=20.06 Aligned_cols=30 Identities=3% Similarity=-0.025 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+
T Consensus 196 ~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 225 (291)
T 3egc_A 196 RITEGAMQALNVLGLRYGPDVEIVSFDNLP 225 (291)
T ss_dssp HHHHHHHHHHHHHTCCBTTTBEEEEESCCG
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEecCch
Confidence 356778889999998877788776665554
No 69
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=33.92 E-value=60 Score=19.74 Aligned_cols=30 Identities=3% Similarity=0.015 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|-+
T Consensus 202 ~~A~g~~~al~~~g~~vP~di~vig~D~~~ 231 (295)
T 3hcw_A 202 MLHLAILSVLYELNIEIPKDVMTATFNDSY 231 (295)
T ss_dssp HHHHHHHHHHHHTTCCTTTTEEEEEECCSH
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEeCChh
Confidence 456788999999999877888877665543
No 70
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=33.31 E-value=43 Score=20.04 Aligned_cols=30 Identities=7% Similarity=0.012 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+
T Consensus 186 ~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 215 (280)
T 3gyb_A 186 ITAIGALGAARELGLRVPEDLSIIGYDNTP 215 (280)
T ss_dssp HHHHHHHHHHHHHTCCTTTTCEEEEESCCH
T ss_pred HHHHHHHHHHHHcCCCCCCeeEEEEECCch
Confidence 356778888889998877788776665543
No 71
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=33.27 E-value=54 Score=19.81 Aligned_cols=30 Identities=3% Similarity=-0.038 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|++.|.+.+.+|.++-+-|.+
T Consensus 198 ~~a~g~~~al~~~G~~vP~di~vig~d~~~ 227 (287)
T 3bbl_A 198 TMAIGAMAAARERGLTIGTDLAIIGFDDAP 227 (287)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEESCCT
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEECCch
Confidence 356678888999998866777766555544
No 72
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=32.72 E-value=46 Score=19.93 Aligned_cols=30 Identities=10% Similarity=-0.075 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+
T Consensus 211 ~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 240 (298)
T 3tb6_A 211 EIALKVIDMLREMDLKVPEDMSIVGYDDSH 240 (298)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEECSBCCT
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEecCCcH
Confidence 456788899999998877788766554443
No 73
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=32.54 E-value=50 Score=19.80 Aligned_cols=30 Identities=7% Similarity=0.100 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+
T Consensus 202 ~~a~g~~~al~~~g~~vP~di~vig~d~~~ 231 (292)
T 3k4h_A 202 LIGLGVLSALSKKGFVVPKDVSIVSFNNAL 231 (292)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEESCCH
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEEEecCcc
Confidence 356678899999998877778776554443
No 74
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=32.39 E-value=50 Score=20.17 Aligned_cols=30 Identities=3% Similarity=0.041 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|++.|.+.+.+|.++-+-|.+
T Consensus 212 ~~A~g~~~al~~~g~~vP~di~vig~D~~~ 241 (305)
T 3huu_A 212 MLNMQLLNVLYEYQLRIPEDIQTATFNTSF 241 (305)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEESCSH
T ss_pred HHHHHHHHHHHHcCCCCCcceEEEEECCcc
Confidence 456788899999999877888777665544
No 75
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=32.04 E-value=53 Score=19.87 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+
T Consensus 198 ~~A~g~~~al~~~g~~vP~di~vig~d~~~ 227 (288)
T 3gv0_A 198 SSTIALVAGFEAAGVKIGEDVDIVSKQSAE 227 (288)
T ss_dssp HHHHHHHHHHHTTTCCTTTSCEEEEEESST
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEecChH
Confidence 356778899999998877788776655554
No 76
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=31.57 E-value=53 Score=19.83 Aligned_cols=30 Identities=7% Similarity=0.185 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+
T Consensus 195 ~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 224 (290)
T 3clk_A 195 MTAIGILNQASSFGIEVPKDLSIVSIDGTE 224 (290)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEeCChH
Confidence 356678889999998866777766554443
No 77
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=31.13 E-value=51 Score=19.67 Aligned_cols=30 Identities=7% Similarity=-0.124 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+
T Consensus 187 ~~a~g~~~al~~~g~~vP~di~vig~d~~~ 216 (277)
T 3e61_A 187 LLAINVLGIVQRYHFKVPAEIQIIGYDNIP 216 (277)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEECSBCCG
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEeeCCch
Confidence 456778899999999877788776555544
No 78
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=30.88 E-value=50 Score=20.22 Aligned_cols=30 Identities=3% Similarity=0.016 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|-+
T Consensus 207 ~~A~g~~~al~~~G~~vP~di~vig~D~~~ 236 (303)
T 3kke_A 207 NAAVGALSTALRLGLRVPEDLSIVGINTTW 236 (303)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEESCCH
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEEcChh
Confidence 356778899999999877888877665543
No 79
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=30.69 E-value=82 Score=18.64 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.+++++++.|.+.+.+|.++-+-|.+
T Consensus 190 ~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 219 (276)
T 2h0a_A 190 QVALGVLEEAVRLGLTPGRDVRVLGFDGHP 219 (276)
T ss_dssp HHHHHHHHHHHTTSCTTTTSEEEEEESCCT
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCCc
Confidence 356678888999998877777766554443
No 80
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=29.77 E-value=55 Score=19.75 Aligned_cols=30 Identities=10% Similarity=0.041 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|-+
T Consensus 188 ~~A~g~~~al~~~g~~vP~di~vig~d~~~ 217 (277)
T 3hs3_A 188 LYAAEIIKEAKRRNLKIPDDFQLVGYDNNI 217 (277)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEECSBCCG
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEeeCCcH
Confidence 456788899999999877788776655544
No 81
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=28.91 E-value=73 Score=19.96 Aligned_cols=31 Identities=6% Similarity=0.034 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPVT 36 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~ 36 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+.
T Consensus 241 ~~A~g~~~al~~~G~~vP~disvig~D~~~~ 271 (333)
T 3jvd_A 241 RLMAGVMRAFTRLNVRVPHDVVIGGYDDPEW 271 (333)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEESCCGG
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEECChHH
Confidence 4567888999999998778888776666553
No 82
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=28.88 E-value=71 Score=19.16 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 7 QYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 7 ~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
+++.++++|.+.|.+.+.+|.++-+-|.+
T Consensus 198 ~a~g~~~al~~~g~~vP~di~vvg~d~~~ 226 (288)
T 2qu7_A 198 LLLGALQAIKESEKEIKKDVIIVGFDDSY 226 (288)
T ss_dssp HHHHHHHHHHHSSCCBTTTBEEEEESCCT
T ss_pred HHHHHHHHHHHhCCCCCCceEEEEeCChH
Confidence 45677888999998766777766554443
No 83
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=28.79 E-value=72 Score=19.28 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+
T Consensus 199 ~~A~g~~~al~~~G~~vP~di~vvg~D~~~ 228 (290)
T 2rgy_A 199 TMAVSALARFQQLGISVPGDVSVIGYDDDY 228 (290)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEeCCch
Confidence 356678888999998766677766554443
No 84
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=28.64 E-value=63 Score=19.39 Aligned_cols=27 Identities=11% Similarity=-0.009 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVP 32 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~ 32 (58)
..++.++++|.+.|.+.+.+|.++-+-
T Consensus 198 ~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 198 SIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 356778889999998877777766554
No 85
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=28.55 E-value=57 Score=20.42 Aligned_cols=31 Identities=6% Similarity=-0.020 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPVT 36 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~ 36 (58)
.+++.++++|++.|.+.+.+|.++-+-|.+.
T Consensus 257 ~~A~g~~~al~~~g~~vP~disvvg~D~~~~ 287 (344)
T 3kjx_A 257 MIAAGGLLYLLEQGIDIPGQIGLAGFNNVEL 287 (344)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEECSBCCGG
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEECChHH
Confidence 4567888999999998778888776655543
No 86
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=28.21 E-value=66 Score=16.71 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCCCCceEEEEee
Q psy3109 10 ETIRRYIAEGKKFKRTIHVSFV 31 (58)
Q Consensus 10 eAl~~L~~~g~~p~r~I~l~f~ 31 (58)
+..++|.+.|+.|-.+|.++-.
T Consensus 23 ~~~~rL~~lGl~pG~~v~V~~~ 44 (81)
T 2k5l_A 23 ALKRRIMDMGITRGCEIYIRKV 44 (81)
T ss_dssp HHHHHHHHHTCCTTCEEEEEEE
T ss_pred HHHHHHHHCCCCCCCEEEEEEe
Confidence 3578999999999999988755
No 87
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=28.16 E-value=73 Score=18.98 Aligned_cols=30 Identities=7% Similarity=-0.007 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.+++++++.|.+.+.+|.++-+-|.+
T Consensus 210 ~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 239 (296)
T 3brq_A 210 DMAIGAMKALHERGVAVPEQVSVIGFDDIA 239 (296)
T ss_dssp HHHHHHHHHHHHHTCCTTTTCEEEEESCCT
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEeecCch
Confidence 345677888889998766677766554443
No 88
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=27.25 E-value=54 Score=16.45 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=17.7
Q ss_pred HHHHHHHcCCCCCceEEEEee
Q psy3109 11 TIRRYIAEGKKFKRTIHVSFV 31 (58)
Q Consensus 11 Al~~L~~~g~~p~r~I~l~f~ 31 (58)
..++|.+.|+.|-..|.+.-.
T Consensus 23 ~~~rL~~lGl~~G~~v~v~~~ 43 (75)
T 2h3j_A 23 YRQRLFSMGLLPGAALRVVRI 43 (75)
T ss_dssp HHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHcCCCCCCEEEEEEE
Confidence 468999999999999987754
No 89
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=26.97 E-value=65 Score=19.53 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+
T Consensus 205 ~~A~g~~~al~~~G~~vP~di~vvg~D~~~ 234 (289)
T 2fep_A 205 EMALGIIHAAQDQGLSIPEDLDIIGFDNTR 234 (289)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEEECCG
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEECChH
Confidence 356778888999998766677765554433
No 90
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=26.16 E-value=78 Score=16.53 Aligned_cols=23 Identities=13% Similarity=-0.012 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCCCCceEEEEeeC
Q psy3109 10 ETIRRYIAEGKKFKRTIHVSFVP 32 (58)
Q Consensus 10 eAl~~L~~~g~~p~r~I~l~f~~ 32 (58)
+..++|.+.|+.|-..|.++-..
T Consensus 26 ~~~~rL~~lGl~pG~~v~V~~~~ 48 (85)
T 3mhx_A 26 AIARRLRELGFVKGEEVRMVAKG 48 (85)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESC
T ss_pred HHHHHHHHCCCCCCCEEEEEEeC
Confidence 35689999999999999887653
No 91
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=26.08 E-value=79 Score=19.68 Aligned_cols=30 Identities=7% Similarity=-0.041 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|++.|.+.+.+|.++-+-|-+
T Consensus 248 ~~A~g~~~al~~~G~~vP~disvig~D~~~ 277 (340)
T 1qpz_A 248 IMAMGALCAADEMGLRVPQDVSLIGYDNVR 277 (340)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEeECCch
Confidence 356678889999998866777766554544
No 92
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=25.76 E-value=85 Score=18.71 Aligned_cols=29 Identities=7% Similarity=-0.019 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGP 34 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DE 34 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.
T Consensus 197 ~~a~g~~~al~~~G~~vP~di~vvg~d~~ 225 (289)
T 1dbq_A 197 IMAMGALCAADEMGLRVPQDVSLIGYDNV 225 (289)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEeeCCc
Confidence 35667888899999876566665544443
No 93
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=25.55 E-value=26 Score=18.27 Aligned_cols=27 Identities=7% Similarity=-0.215 Sum_probs=17.5
Q ss_pred HHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109 13 RRYIAEGKKFKRTIHVSFVPGPVTQNE 39 (58)
Q Consensus 13 ~~L~~~g~~p~r~I~l~f~~DEE~Gg~ 39 (58)
+.|.+..-.|.+++-.+|..|+-+||.
T Consensus 48 ~~l~~~~g~~~~~vP~ifi~g~~igG~ 74 (93)
T 1t1v_A 48 DEMRTLAGNPKATPPQIVNGNHYCGDY 74 (93)
T ss_dssp HHHHHHTTCTTCCSCEEEETTEEEEEH
T ss_pred HHHHHHhCCCCCCCCEEEECCEEEeCH
Confidence 344443224566777888888888875
No 94
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=25.50 E-value=70 Score=19.95 Aligned_cols=30 Identities=7% Similarity=-0.048 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+
T Consensus 249 ~~A~g~~~al~~~G~~vP~disvvgfD~~~ 278 (339)
T 3h5o_A 249 DLAIGALARSQQLGIAVPERLAIAGFNDLQ 278 (339)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEECSBCCG
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEECCHH
Confidence 456778899999999877888877665554
No 95
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=25.32 E-value=60 Score=19.61 Aligned_cols=30 Identities=3% Similarity=-0.005 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.+++++.+.|.+.+.+|.++-+-|.+
T Consensus 207 ~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 236 (293)
T 2iks_A 207 ALLQGVMDVTLRRDGKLPSDLAIATFGDNE 236 (293)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCEEEEESCCG
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEECCHH
Confidence 356677888888898766777776665544
No 96
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=25.16 E-value=78 Score=19.64 Aligned_cols=30 Identities=7% Similarity=0.052 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|++.|.+.+.+|.++-+-|.+
T Consensus 249 ~~A~g~~~al~~~G~~vP~disvig~D~~~ 278 (332)
T 2o20_A 249 TVAVGLLSAMMDKGVKVPEDFEIISGANSP 278 (332)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEESSCCG
T ss_pred HHHHHHHHHHHHcCCCCccCEEEEEeCChH
Confidence 356678899999998877778766555544
No 97
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=24.97 E-value=75 Score=19.15 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGP 34 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DE 34 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.
T Consensus 194 ~~A~g~~~al~~~g~~vP~di~vvg~d~~ 222 (285)
T 3c3k_A 194 VLAAGAIQALTESGLSIPQDVAVVGFDGV 222 (285)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEeCCh
Confidence 35667888899999876677776655443
No 98
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=24.55 E-value=69 Score=19.53 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPG 33 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~D 33 (58)
.+++.++++|.+.|.+.+.+|.++-+-|
T Consensus 201 ~~A~g~~~al~~~G~~vP~di~vig~D~ 228 (306)
T 2vk2_A 201 DMVIGAIQAIKEAGLKPGKDILTGSIDG 228 (306)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEEEC
T ss_pred hHHHHHHHHHHHcCCCCCCCeEEEeecC
Confidence 3566788899999987666776654433
No 99
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=24.14 E-value=75 Score=18.36 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCCCC
Q psy3109 9 LETIRRYIAEGKKFK 23 (58)
Q Consensus 9 leAl~~L~~~g~~p~ 23 (58)
=+++..|+..|+.|.
T Consensus 23 eekinELk~dG~ePD 37 (103)
T 2pk8_A 23 EEKMNELKMDGFNPD 37 (103)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCCCC
Confidence 356778999999993
No 100
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=24.07 E-value=81 Score=16.01 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCCCCceEEEEee
Q psy3109 10 ETIRRYIAEGKKFKRTIHVSFV 31 (58)
Q Consensus 10 eAl~~L~~~g~~p~r~I~l~f~ 31 (58)
+..++|.+.|+.|-..|.+.-.
T Consensus 26 ~~~~rL~~lGi~~G~~v~v~~~ 47 (77)
T 3e19_A 26 NARQKLVSMGLTPGATIQVLES 47 (77)
T ss_dssp HHHHHHHTTTCSTTCEEEEEEC
T ss_pred HHHHHHHHCCCCCCCEEEEEEe
Confidence 4578999999999998888754
No 101
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=23.96 E-value=87 Score=18.51 Aligned_cols=28 Identities=11% Similarity=0.021 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPG 33 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~D 33 (58)
.+++.++++|.+.|.+.+.+|.++-+-|
T Consensus 191 ~~a~g~~~al~~~g~~vP~di~vvg~d~ 218 (275)
T 3d8u_A 191 EIAIGALFECHRRVLKVPTDIAIICLEG 218 (275)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEESSC
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEecCC
Confidence 3567788889999987667777655444
No 102
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=23.80 E-value=82 Score=19.85 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|++.|.+.+.+|.++-+-|-+
T Consensus 278 ~~A~g~~~al~~~G~~vP~disvigfD~~~ 307 (366)
T 3h5t_A 278 ALAFGVLEYLKSVGKSAPADLSLTGFDGTH 307 (366)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEEECCH
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEECCCh
Confidence 456788899999999877788776554543
No 103
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=23.62 E-value=33 Score=20.45 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCCCCce-----EEEEeeCCCCC
Q psy3109 10 ETIRRYIAEGKKFKRT-----IHVSFVPGPVT 36 (58)
Q Consensus 10 eAl~~L~~~g~~p~r~-----I~l~f~~DEE~ 36 (58)
+|++.|.+.|+...++ ++.+-.-|.|-
T Consensus 82 eAi~~Lqe~G~VfqK~~~~d~lYyVT~qDKdL 113 (120)
T 1wj5_A 82 NALQLLQEKGLVFQRDSGSDKLYYVTTKDKDL 113 (120)
T ss_dssp HHHHHHHHHTSEECSSCSSSCCBEECSSSCCC
T ss_pred HHHHHHHHCCEEEeccCCccceEEeeccchhh
Confidence 9999999999865544 66666666663
No 104
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=23.51 E-value=88 Score=19.38 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+
T Consensus 241 ~~A~g~~~al~~~G~~vP~disvvg~D~~~ 270 (330)
T 3ctp_A 241 IAAATVMRALKKRGVSIPQEVQIIGFDNSF 270 (330)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEECSBCCT
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEECChH
Confidence 346678899999998877788776554443
No 105
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=23.03 E-value=1e+02 Score=19.95 Aligned_cols=32 Identities=3% Similarity=-0.158 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ 37 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G 37 (58)
.+++.+++++++.|.+.+.+|.++-+-|.+..
T Consensus 213 ~~A~g~~~al~~~G~~vP~disvig~D~~~~~ 244 (412)
T 4fe7_A 213 ARARHILQVCEHLHIPVPEKLCVIGIDNEELT 244 (412)
T ss_dssp HHHHHHHHHHHHHTCCTTTTSEEEESSCCSCS
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEeecchhhh
Confidence 45677888999999887778887766665543
No 106
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=22.81 E-value=1e+02 Score=19.23 Aligned_cols=28 Identities=18% Similarity=0.029 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPG 33 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~D 33 (58)
.+++.++++|.+.|.+.+.+|.++-+-|
T Consensus 215 ~~a~g~~~al~~~G~~vP~di~vvg~d~ 242 (350)
T 3h75_A 215 EMALGAMQAARELGRKPGTDLLFSGVNS 242 (350)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEESC
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEecCC
Confidence 4567888999999988666776655433
No 107
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=22.73 E-value=95 Score=16.36 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCCCCceEEEEee
Q psy3109 10 ETIRRYIAEGKKFKRTIHVSFV 31 (58)
Q Consensus 10 eAl~~L~~~g~~p~r~I~l~f~ 31 (58)
+..++|.+.|+.|-..|.++-.
T Consensus 21 ~~~rrL~~mGl~pG~~V~Vi~~ 42 (83)
T 2lx9_A 21 AYRQKLLSLGMLPGSSFNVVRV 42 (83)
T ss_dssp HHHHHHHHSSCCSSSEEEEEEE
T ss_pred HHHHHHHHCCCCCCCEEEEEEe
Confidence 4578999999999999998755
No 108
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=22.56 E-value=79 Score=16.62 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=18.2
Q ss_pred HHHHHHHcCCCCCceEEEEeeC
Q psy3109 11 TIRRYIAEGKKFKRTIHVSFVP 32 (58)
Q Consensus 11 Al~~L~~~g~~p~r~I~l~f~~ 32 (58)
..++|.+.|+.|-.+|.++-..
T Consensus 27 ~~~rL~~mGl~pG~~V~V~~~~ 48 (86)
T 2k4y_A 27 VRRKIMDMGIVRGTEIYIEGKA 48 (86)
T ss_dssp HHHHHHHHTCCTTCEEEEEEEC
T ss_pred HHHHHHHCCCCCCCEEEEEEeC
Confidence 4689999999999999887553
No 109
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=22.39 E-value=60 Score=16.41 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCCCCceEEEEee
Q psy3109 10 ETIRRYIAEGKKFKRTIHVSFV 31 (58)
Q Consensus 10 eAl~~L~~~g~~p~r~I~l~f~ 31 (58)
+..++|.+.|+.|-..|.++-.
T Consensus 21 ~~~~rL~~lGl~pG~~v~v~~~ 42 (75)
T 2gcx_A 21 AYRQKLLSLGMLPGSSFHVVRV 42 (75)
T ss_dssp HHHHHHTTTTCCSSEEEEECCC
T ss_pred HHHHHHHHCCCCCCCEEEEEEe
Confidence 4578899999999888877643
No 110
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=22.03 E-value=81 Score=19.83 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|++.|.+.+.+|.++-+-|.+
T Consensus 260 ~~A~g~~~al~~~G~~vP~disvigfD~~~ 289 (355)
T 3e3m_A 260 MPAFGLLSRLKSIGVAVPEQVSVVGFGNFE 289 (355)
T ss_dssp HHHHHHHHHHHHHTCCTTTTCEEECSSCCH
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEECChH
Confidence 456778888999998877888877655543
No 111
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=21.46 E-value=76 Score=18.96 Aligned_cols=28 Identities=4% Similarity=-0.024 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPG 33 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~D 33 (58)
.+++.++++|.+.|.+.+.+|.++-+-|
T Consensus 187 ~~a~g~~~al~~~g~~vP~di~vvg~d~ 214 (277)
T 3cs3_A 187 EMAIGVYKYVAETNYQMGKDIRIIGFDN 214 (277)
T ss_dssp HHHHHHHHHHTTSSCCBTTTEEEECSSC
T ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeCC
Confidence 3567788899999987667777665444
No 112
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=21.41 E-value=86 Score=19.94 Aligned_cols=21 Identities=5% Similarity=-0.110 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCC
Q psy3109 2 KCVGIQYLETIRRYIAEGKKF 22 (58)
Q Consensus 2 K~~~~~~leAl~~L~~~g~~p 22 (58)
+..+.+++.|++.|++.|+..
T Consensus 115 ~~~~~qi~~al~ylH~~~IiH 135 (275)
T 3hyh_A 115 RRFFQQIISAVEYCHRHKIVH 135 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHCCccc
Confidence 345779999999999998643
No 113
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=21.27 E-value=1.1e+02 Score=19.14 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|-+
T Consensus 251 ~~A~g~~~al~~~G~~vP~disvvG~D~~~ 280 (348)
T 3bil_A 251 MMTIGVIEACHKAGLVIGKDVSVIGFDTHP 280 (348)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEESCCG
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCcH
Confidence 356778888999998766777776555544
No 114
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=21.08 E-value=36 Score=16.45 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=7.9
Q ss_pred HHHHHHHHHHcCC
Q psy3109 8 YLETIRRYIAEGK 20 (58)
Q Consensus 8 ~leAl~~L~~~g~ 20 (58)
+-||+++|...|.
T Consensus 26 IkEAVrRlq~~~l 38 (39)
T 1gng_X 26 IKEAVRRLHSRRL 38 (39)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHccC
Confidence 4588888887763
No 115
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=20.24 E-value=95 Score=19.50 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeCCCC
Q psy3109 6 IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35 (58)
Q Consensus 6 ~~~leAl~~L~~~g~~p~r~I~l~f~~DEE 35 (58)
.+++.++++|.+.|.+.+.+|.++-+-|.+
T Consensus 248 ~~A~g~~~al~~~G~~vP~disvvGfD~~~ 277 (349)
T 1jye_A 248 QMALGAMRAITESGLRVGADISVVGYDDTE 277 (349)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEECSBCCG
T ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEECCcH
Confidence 356778888999998766777766555543
No 116
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=20.10 E-value=75 Score=17.52 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=11.3
Q ss_pred HHHHHHHHHHcCCCC
Q psy3109 8 YLETIRRYIAEGKKF 22 (58)
Q Consensus 8 ~leAl~~L~~~g~~p 22 (58)
+-||.++|+..|..|
T Consensus 75 ireA~rrl~~~g~~p 89 (89)
T 1bh9_B 75 MREAVRRLKSKGQIP 89 (89)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCC
Confidence 457888888888654
Done!