RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3109
         (58 letters)



>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed
           mutagenesis, structure comparison, zinc, hydrolase;
           1.40A {Homo sapiens} SCOP: c.56.5.4
          Length = 198

 Score = 49.0 bits (117), Expect = 2e-09
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCV IQYLE +RR   EG +F RTIH++FVP
Sbjct: 114 MKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVP 145


>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
          substrate channeling, amidotransferase, TIM-barrel AS A
          SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
          SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
          1ox4_A
          Length = 555

 Score = 24.7 bits (54), Expect = 1.6
 Identities = 6/15 (40%), Positives = 8/15 (53%)

Query: 8  YLETIRRYIAEGKKF 22
          + + IR YI  GK  
Sbjct: 68 FEKPIREYIESGKPI 82


>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A
           {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
          Length = 393

 Score = 24.6 bits (54), Expect = 2.2
 Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 2/34 (5%)

Query: 1   MKCVGI-QYLETIRRYIAEGKKFKRTIHVSFVPG 33
            K  G    L T++     G +   TI V F   
Sbjct: 120 DKG-GNAVILHTLKLLKEYGVRDYGTITVLFNTD 152


>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite,
           siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in
           europe; HET: SRM; 2.80A {Mycobacterium tuberculosis}
           SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB:
           1zj9_A*
          Length = 566

 Score = 23.9 bits (52), Expect = 3.1
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 38  NETCGLAAANSVLYLLGLMSH 58
            E C L+ A + +    L+  
Sbjct: 431 IEFCKLSFAETRVRAQHLVPE 451


>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography,
           heme, electron transport, oxidoreductase; HET: SRM;
           2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1
           d.134.1.1 d.134.1.1
          Length = 608

 Score = 23.9 bits (52), Expect = 3.7
 Identities = 4/21 (19%), Positives = 8/21 (38%)

Query: 38  NETCGLAAANSVLYLLGLMSH 58
           ++ CG A   +    L +   
Sbjct: 490 SQFCGQAIIETKARALKVTEE 510


>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein,
           oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB:
           3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A*
           3b0j_A* 3b0l_A* 3b0h_A*
          Length = 591

 Score = 23.8 bits (52), Expect = 4.2
 Identities = 5/21 (23%), Positives = 8/21 (38%)

Query: 38  NETCGLAAANSVLYLLGLMSH 58
           N+ CG A   +    L +   
Sbjct: 472 NQFCGQAIIETKARSLKITEE 492


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0712    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 856,500
Number of extensions: 35535
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 6
Length of query: 58
Length of database: 6,701,793
Length adjustment: 30
Effective length of query: 28
Effective length of database: 5,864,163
Effective search space: 164196564
Effective search space used: 164196564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)