RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3109
         (58 letters)



>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
           {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 305

 Score = 24.1 bits (52), Expect = 1.2
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 6   IQYLETIRRYIAEGKKFKRTIHVSFVPGPV 35
           I++LE +  Y+ +  K ++  +V     P 
Sbjct: 147 IKFLENMDYYLEQELKVEQEGNVYSCTMPK 176


>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
           {Bacillus caldotenax [TaxId: 1395]}
          Length = 413

 Score = 23.9 bits (51), Expect = 1.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 20  KKFKRTIHVSFVPGPVTQNETCGLA 44
           +K  + I+VS  PGP     + G+ 
Sbjct: 383 QKINQIIYVSATPGPYELEHSPGVV 407


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 205,934
Number of extensions: 6489
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 2
Length of query: 58
Length of database: 2,407,596
Length adjustment: 28
Effective length of query: 30
Effective length of database: 2,023,156
Effective search space: 60694680
Effective search space used: 60694680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)