BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3113
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 253 bits (647), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 187/293 (63%), Gaps = 9/293 (3%)
Query: 16 DLFTEIQKDRLYFATFKSNRERP-TTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCD 74
D++ +I DRL FA S RP + + +H+F D Y NF+ DFGP+ L+ +YRYC
Sbjct: 9 DVYLDI-TDRLCFAILYS---RPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCC 64
Query: 75 KLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVP 134
K+ KL S T+ K I+H+TG++ +K+ NAAFL+GCY +IYL TP E Y+ L +
Sbjct: 65 KINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRIL-IFGETS 123
Query: 135 FIAFQDASDENSKYTLELLECFNAVFKARQHNLXXXXXXXXXEMEKYERIQFGDISWIVP 194
+I F+DA+ + + + LL+CF+AV KA Q+ E E YE+ + GD++WI+P
Sbjct: 124 YIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIP 183
Query: 195 NKLLAFSGPNT---TEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHV 251
++ +AF GP++ E H PE Y+ YF + V ++RLN++ YD ++FT+AG DH
Sbjct: 184 DRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHH 243
Query: 252 DFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVR 304
D +F DG+ P + I+ EF+ +CE +G IAVHCKAGLGRTG LI Y++KH R
Sbjct: 244 DLFFADGSTPTDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYR 296
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 250 bits (639), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 126/293 (43%), Positives = 186/293 (63%), Gaps = 9/293 (3%)
Query: 16 DLFTEIQKDRLYFATFKSNRERP-TTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCD 74
D++ +I DRL FA S RP + + +H+F D Y NF+ DFGP+ L+ +YRYC
Sbjct: 9 DVYLDI-TDRLCFAILYS---RPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCC 64
Query: 75 KLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVP 134
K+ KL S T+ K I+H+TG++ +K+ NAAFL+GCY +IYL TP E Y+ L +
Sbjct: 65 KINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRIL-IFGETS 123
Query: 135 FIAFQDASDENSKYTLELLECFNAVFKARQHNLXXXXXXXXXEMEKYERIQFGDISWIVP 194
+I F+DA+ + + + LL+CF+AV KA Q+ E E YE+ + GD++WI+P
Sbjct: 124 YIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIP 183
Query: 195 NKLLAFSGPNT---TEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHV 251
++ +AF GP++ E H PE Y+ YF + V ++RLN++ YD ++FT+AG DH
Sbjct: 184 DRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHH 243
Query: 252 DFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVR 304
D +F DG+ P + I+ EF+ +CE +G IAVH KAGLGRTG LI Y++KH R
Sbjct: 244 DLFFADGSTPTDAIVKEFLDICENAEGAIAVHSKAGLGRTGTLIACYIMKHYR 296
>pdb|1R6H|A Chain A, Solution Structure Of Human Prl-3
Length = 172
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 212 YHPPEFYLDYFLQN----GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILC 267
++P L F+++ G VVR+ + YD+ + G+ VD+ F DG PP ++
Sbjct: 26 HNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEKDGITVVDWPFDDGAPPPGKVVE 85
Query: 268 EFI-----KVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK 301
+++ K CE +AVHC AGLGR L+ +I+
Sbjct: 86 DWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALIE 124
>pdb|1V3A|A Chain A, Structure Of Human Prl-3, The Phosphatase Associated With
Cancer Metastasis
Length = 173
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 212 YHPPEFYLDYFLQN----GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILC 267
++P L F+++ G VVR+ + YD+ + G+ VD+ F DG PP ++
Sbjct: 23 HNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEKDGITVVDWPFDDGAPPPGKVVE 82
Query: 268 EFI-----KVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK 301
+++ K CE +AVHC AGLGR L+ +I+
Sbjct: 83 DWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALIE 121
>pdb|1RXD|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
pdb|1RXD|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
pdb|1RXD|C Chain C, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
Length = 159
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 212 YHPPEFYLDYFLQN----GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILC 267
++P L+ F++ GV +VR+ + YD + G+ +D+ F DG P N I+
Sbjct: 22 HNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVD 81
Query: 268 EF-----IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK 301
++ IK E+ IAVHC AGLGR L+ +I+
Sbjct: 82 DWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE 120
>pdb|1ZCK|A Chain A, Native Structure Prl-1 (Ptp4a1)
pdb|1ZCK|B Chain B, Native Structure Prl-1 (Ptp4a1)
pdb|1ZCK|C Chain C, Native Structure Prl-1 (Ptp4a1)
Length = 154
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 212 YHPPEFYLDYFLQN----GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILC 267
++P L+ F++ GV +VR+ + YD + G+ +D+ F DG P N I+
Sbjct: 17 HNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVD 76
Query: 268 EF-----IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK 301
++ IK E+ IAVHC AGLGR L+ +I+
Sbjct: 77 DWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE 115
>pdb|3RZ2|A Chain A, Crystal Of Prl-1 Complexed With Peptide
pdb|3RZ2|B Chain B, Crystal Of Prl-1 Complexed With Peptide
Length = 189
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 212 YHPPEFYLDYFLQN----GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILC 267
++P L+ F++ GV +VR+ + YD + G+ +D+ F DG P N I+
Sbjct: 43 HNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVD 102
Query: 268 EF-----IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK 301
++ IK E+ IAVHC AGLGR L+ +I+
Sbjct: 103 DWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE 141
>pdb|1X24|A Chain A, Prl-1 (Ptp4a)
pdb|1X24|B Chain B, Prl-1 (Ptp4a)
Length = 180
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 212 YHPPEFYLDYFLQN----GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILC 267
++P L+ F++ GV +VR+ + YD + G+ +D+ F DG P N I+
Sbjct: 43 HNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVD 102
Query: 268 EF-----IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK 301
++ IK E+ IAVHC AGLGR L+ +I+
Sbjct: 103 DWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE 141
>pdb|1XM2|A Chain A, Crystal Structure Of Human Prl-1
pdb|1XM2|B Chain B, Crystal Structure Of Human Prl-1
pdb|1XM2|C Chain C, Crystal Structure Of Human Prl-1
pdb|1XM2|D Chain D, Crystal Structure Of Human Prl-1
pdb|1XM2|E Chain E, Crystal Structure Of Human Prl-1
pdb|1XM2|F Chain F, Crystal Structure Of Human Prl-1
Length = 173
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 212 YHPPEFYLDYFLQN----GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILC 267
++P L+ F++ GV +VR+ + YD + G+ +D+ F DG P N I+
Sbjct: 23 HNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVD 82
Query: 268 EF-----IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK 301
++ IK E+ IAVH AGLGR L+ +I+
Sbjct: 83 DWLSLVKIKFREEPGCCIAVHSVAGLGRAPVLVALALIE 121
>pdb|1ZCL|A Chain A, Prl-1 C104s Mutant In Complex With Sulfate
pdb|1ZCL|B Chain B, Prl-1 C104s Mutant In Complex With Sulfate
Length = 180
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 212 YHPPEFYLDYFLQN----GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILC 267
++P L+ F++ GV +VR+ + YD + G+ +D+ F DG P N I+
Sbjct: 43 HNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVD 102
Query: 268 EF-----IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK 301
++ IK E+ IAVH AGLGR L+ +I+
Sbjct: 103 DWLSLVKIKFREEPGCCIAVHSVAGLGRAPVLVALALIE 141
>pdb|4ERC|A Chain A, Structure Of Vhz Bound To Metavanadate
pdb|4ERC|B Chain B, Structure Of Vhz Bound To Metavanadate
Length = 150
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 18/148 (12%)
Query: 184 IQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKF 243
+Q + SW++P +L + P P Y + L GV+ +V L ++
Sbjct: 3 VQPPNFSWVLPGRLAGLALPRL---------PAHY-QFLLDLGVRHLVSLTERGPPHSD- 51
Query: 244 TEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKG---PIAVHCKAGLGRTGCLIGAYMI 300
+ GL PD P D + F+++ ++ + VHC G GRTG ++ Y++
Sbjct: 52 SCPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLV 111
Query: 301 KHVRRRRTVLTKRNQYHQLRWVPGPLET 328
K R + R PG +ET
Sbjct: 112 KE----RGLAAGDAIAEIRRLRPGSIET 135
>pdb|2IMG|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
23 From Homo Sapiens In Complex With Ligand Malate Ion
Length = 151
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 184 IQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKF 243
+Q + SW++P +L + P P Y + L GV+ +V L ++
Sbjct: 4 VQPPNFSWVLPGRLAGLALPRL---------PAHY-QFLLDLGVRHLVSLTERGPPHSD- 52
Query: 244 TEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKG---PIAVHCKAGLGRTGCLIGAYMI 300
+ GL PD P D + F+++ ++ + VHC G GRTG + Y++
Sbjct: 53 SCPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTXLACYLV 112
Query: 301 KHVRRRRTVLTKRNQYHQLRWVPGPLET 328
K R + R PG +ET
Sbjct: 113 KE----RGLAAGDAIAEIRRLRPGSIET 136
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 255 FPDGTAPPN----DILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAY-MIKHVRRRRTV 309
+PD P + D L IK C PI VHC AG+GRTG LIGAY + H+ R +
Sbjct: 197 WPDHGVPESAASFDELLSVIKNCVT-TSPILVHCSAGIGRTGTLIGAYAALLHI--ERGI 253
Query: 310 LTKRNQY 316
LT Y
Sbjct: 254 LTDSTVY 260
>pdb|1YN9|A Chain A, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|B Chain B, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|C Chain C, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
Length = 169
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 234 NQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY--KGP---IAVHCKAGL 288
K YD F AGL + P T PP I+ EFI +++ K P + VHC G+
Sbjct: 65 TSKYYDGVHFLRAGLLYKKIQVPGQTLPPESIVQEFIDTVKEFTEKCPGMLVGVHCTHGI 124
Query: 289 GRTGCLIGAYMI 300
RTG ++ Y++
Sbjct: 125 NRTGYMVCRYLM 136
>pdb|3S4O|A Chain A, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
pdb|3S4O|B Chain B, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
Length = 167
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 218 YLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCE--- 274
Y+ GV+ +VR+ YD G+D + F DG P +L ++K+ +
Sbjct: 39 YIKELQHRGVRHLVRVCGPTYDATLVKSRGIDVHSWPFDDGAPPTRAVLDSWLKLLDTEL 98
Query: 275 --KYKGP------IAVHCKAGLGRTGCLIGAYMIKH-----------VRRRRTVLTKRNQ 315
+ + P I VHC AGLGR L+ ++++ +R +R + Q
Sbjct: 99 ARQQEDPSVPPPTIGVHCVAGLGRAPILVALALVEYGNVSALDAIALIREKRKGAINQTQ 158
Query: 316 YHQL 319
H +
Sbjct: 159 XHWI 162
>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
Length = 312
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 259 TAPPNDILCEFIKVCE----KYKGPIAVHCKAGLGRTGCLIGA-YMIKHVR 304
TA + + +F+++ K KGP+ +HC AG+GRTG I ++++H+R
Sbjct: 203 TANAAESILQFVQMVRQKSVKSKGPMIIHCSAGVGRTGTFIALDWLLQHIR 253
>pdb|2A8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Phosphatase Receptor, Type R
Length = 283
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 252 DFYFPDGTAPPNDIL--CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYM 299
D PD P ++ E ++ + +GP+ VHC AG+GRTGC I +
Sbjct: 182 DHKTPDSAQPLLQLMLDVEEDRLASQGRGPVVVHCSAGIGRTGCFIATSI 231
>pdb|2BIJ|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 (step, Striatum Enriched Enriched
Phosphatase)
Length = 305
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 225 NGVQLVVR--LNQKNYDERKFT------EAGLDHVDF-YFPD----GTAPPNDILCEFIK 271
+GV++ V+ ++ ++Y R + E GL H F +PD APP L ++
Sbjct: 162 DGVEITVQKVIHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVE 221
Query: 272 VCEKYKGP----IAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
+ +GP I VHC AG+GRTGC I + R+ V+ QLR
Sbjct: 222 EAAQQEGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLR 274
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 252 DFYFPDGTAPPNDIL--CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYM 299
D PD P ++ E ++ + +GP+ VHC AG+GRTGC I +
Sbjct: 195 DHKTPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRTGCFIATSI 244
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
Length = 302
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 279 PIAVHCKAGLGRTGCLIGAY-MIKHVRR 305
P+ VHC AG+GRTG LIGAY + H+ R
Sbjct: 221 PVVVHCSAGIGRTGTLIGAYAALTHLER 248
>pdb|2RF6|A Chain A, Crystal Structure Of The Vaccinia Virus Dual-Specificity
Phosphatase Vh1
pdb|3CM3|A Chain A, High Resolution Crystal Structure Of The Vaccinia Virus
Dual-Specificity Phosphatase Vh1
Length = 176
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 254 YFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKR 313
YF D TA F+ C++ P+ VH AG+ R+G +I AY++ + +L
Sbjct: 93 YFDDVTA--------FLSKCDQRNEPVLVHSAAGVNRSGAMILAYLMSKNKESLPMLYFL 144
Query: 314 NQYHQLRWVPG 324
YH +R + G
Sbjct: 145 YVYHSMRDLRG 155
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 255 FPDGTAP--PNDILC--EFIKVCEKY-KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRT 308
+PD P P IL +K C GP+ VHC AG+GRTGC I M++ ++ +T
Sbjct: 182 WPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKT 241
Query: 309 V 309
V
Sbjct: 242 V 242
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 264 DILCEFIKVCEKY--KGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVL 310
D + + K E++ GPI VHC AG+GRTG I ++ R V+
Sbjct: 485 DFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVV 533
>pdb|2A3K|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Ptpn7 (Heptp, Hematopoietic Protein
Tyrosine Phosphatase)
Length = 296
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 252 DFYFPDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLGRTGCLIG 296
D P+ P ++ E + E + GPI VHC AG+GRTGC I
Sbjct: 195 DHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIA 241
>pdb|1ZC0|A Chain A, Crystal Structure Of Human Hematopoietic Tyrosine
Phosphatase (heptp) Catalytic Domain
Length = 309
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 252 DFYFPDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLGRTGCLIG 296
D P+ P ++ E + E + GPI VHC AG+GRTGC I
Sbjct: 206 DHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIA 252
>pdb|3O4S|A Chain A, Crystal Structure Of Heptp With A Closed Wpd Loop And An
Ordered E- Loop
pdb|3O4T|A Chain A, Crystal Structure Of Heptp With An Open Wpd Loop And
Partially Depleted Active Site
pdb|3O4U|A Chain A, Crystal Structure Of Heptp With An Atypically Open Wpd
Loop
Length = 308
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 252 DFYFPDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLGRTGCLIG 296
D P+ P ++ E + E + GPI VHC AG+GRTGC I
Sbjct: 205 DHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIA 251
>pdb|2GP0|A Chain A, Heptp Catalytic Domain (Residues 44-339), S225d Mutant
Length = 309
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 252 DFYFPDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLGRTGCLIG 296
D P+ P ++ E + E + GPI VHC AG+GRTGC I
Sbjct: 206 DHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIA 252
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 278 GPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
GPI VHC AG+GRTGC I M++ ++ +TV
Sbjct: 224 GPIVVHCSAGVGRTGCFIVIDAMLERIKTEKTV 256
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 255 FPDGTAPPN-----DILCEFIKVCEKY--KGPIAVHCKAGLGRTGCLIGAYMIKHVRRRR 307
+P+ AP + D + + K E++ GPI+VHC AG+GRTG I ++ R
Sbjct: 485 WPEQGAPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYE 544
Query: 308 TVL 310
V+
Sbjct: 545 GVV 547
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 278 GPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
GPI VHC AG+GRTGC I M++ ++ +TV
Sbjct: 222 GPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTV 254
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 212 YHPPEFYLDYF----LQNGVQLVVRLNQ-KNYDERKFTEAGLDHVDFYFPDGTAPPNDIL 266
Y+ P++ L F ++G VR Q ++ E+ ++G +DF +
Sbjct: 452 YNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDF------------I 499
Query: 267 CEFIKVCEKY--KGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVL 310
+ K E++ GPI+VHC AG+GRTG I ++ R V+
Sbjct: 500 GQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVV 545
>pdb|2P4D|A Chain A, Structure-Assisted Discovery Of Variola Major H1
Phosphatase Inhibitors
Length = 172
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 254 YFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKR 313
YF D TA F+ C++ P+ VHC AG+ R+G I AY+ + L
Sbjct: 89 YFDDVTA--------FLSKCDQRNEPVLVHCVAGVNRSGAXILAYLXSKNKESSPXLYFL 140
Query: 314 NQYHQLRWVPG 324
YH R + G
Sbjct: 141 YVYHSXRDLRG 151
>pdb|2I6I|A Chain A, Crystal Structures Of The Archaeal Sulfolobus Ptp-Fold
Phosphatase
pdb|2I6J|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphate Ion
pdb|2I6M|A Chain A, Crystal Structure Of The Complexes Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Tungstate
pdb|3RO1|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Terpyridine
Platinum(Ii)
Length = 161
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 234 NQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGC 293
K+Y + GL + PDG P + +K K VHC G+GRTG
Sbjct: 46 GDKDYYLSILKKNGLQPLHIPIPDGGVPSDSQFLTIMKWLLSEKEGNLVHCVGGIGRTGT 105
Query: 294 LIGAYMI 300
++ +Y+I
Sbjct: 106 ILASYLI 112
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 278 GPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
GP+ VHC AG+GRTGC I M++ ++ +TV
Sbjct: 219 GPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTV 251
>pdb|2QDC|A Chain A, Crystal Structure Of The Heptp Catalytic Domain D236a
Mutant
Length = 309
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 256 PDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLGRTGCLIG 296
P+ P ++ E + E + GPI VHC AG+GRTGC I
Sbjct: 210 PESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIA 252
>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Kappa At 1.95a Resolution
Length = 313
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 278 GPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
GPI VHC AG GRTGC I ++ + R V+ N LR
Sbjct: 235 GPIVVHCSAGAGRTGCYIVIDIMLDMAEREGVVDIYNCVKALR 277
>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
Length = 195
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 254 YFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKR 313
YF D TA F+ C++ P+ VHC AG+ R+G I AY+ + L
Sbjct: 110 YFDDVTA--------FLSKCDQRNEPVLVHCAAGVNRSGAXILAYLXSKNKESLPXLYFL 161
Query: 314 NQYHQLRWVPG 324
YH R + G
Sbjct: 162 YVYHSXRDLRG 172
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 259 TAPPNDILCEFIKVCE----KYKGPIAVHCKAGLGRTGCLIGA-YMIKHVR 304
TA + + +F+ + K KGP+ +HC AG+GRTG I +++H+R
Sbjct: 196 TANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIR 246
>pdb|1RPM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
pdb|1RPM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
Length = 278
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 278 GPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
GP+ VHC AG GRTGC I ++ + R V+ N +LR
Sbjct: 211 GPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELR 253
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 259 TAPPNDILCEFIKVCE----KYKGPIAVHCKAGLGRTGCLIGA-YMIKHVR 304
TA + + +F+ + K KGP+ +HC AG+GRTG I +++H+R
Sbjct: 194 TANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIR 244
>pdb|2CJZ|A Chain A, Crystal Structure Of The C472s Mutant Of Human Protein
Tyrosine Phosphatase Ptpn5 (Step, Striatum Enriched
Phosphatase) In Complex With Phosphotyrosine
Length = 305
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 225 NGVQLVVR--LNQKNYDERKFT------EAGLDHVDF-YFPD----GTAPPNDILCEFIK 271
+GV++ V+ ++ ++Y R + E GL H F +PD APP L ++
Sbjct: 162 DGVEITVQKVIHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVE 221
Query: 272 VCEKYKGP----IAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
+ +GP I VH AG+GRTGC I + R+ V+ QLR
Sbjct: 222 EAAQQEGPHCAPIIVHSSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLR 274
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 234 NQKNYDERKFTEAG-LDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTG 292
NQ+ + R T+ + D PD ++ D +C + P+ VHC AG+GRTG
Sbjct: 193 NQEKNESRPLTQIQYIAWPDHGVPDDSSDFLDFVCHVRNKRAGKEEPVVVHCSAGIGRTG 252
Query: 293 CLI 295
LI
Sbjct: 253 VLI 255
>pdb|2OOQ|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptprt
pdb|2OOQ|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptprt
Length = 286
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 278 GPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
GPI VHC AG GRTGC I + + V+ N +LR
Sbjct: 213 GPIVVHCSAGAGRTGCFIAIDTMLDMAENEGVVDIFNCVRELR 255
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 255 FPDGTAP--PNDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMI 300
+PD P P +L ++ ++ + GPI VHC AG+GRTG +I M+
Sbjct: 417 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDML 469
>pdb|4GS0|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GS0|B Chain B, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
Length = 308
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 255 FPDGTAP--PNDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMI 300
+PD P P +L ++ ++ + GPI VHC AG+GRTG +I M+
Sbjct: 197 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDML 249
>pdb|1GWZ|A Chain A, Crystal Structure Of The Catalytic Domain Of The Protein
Tyrosine Phosphatase Shp-1
Length = 299
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 255 FPDGTAP--PNDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMI 300
+PD P P +L ++ ++ + GPI VHC AG+GRTG +I M+
Sbjct: 175 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDML 227
>pdb|2BV5|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 At 1.8a Resolution
Length = 282
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 225 NGVQLVVR--LNQKNYDERKFT------EAGLDHVDF-YFPD----GTAPPNDILCEFIK 271
+GV++ V+ ++ ++Y R + E GL H F +PD APP L ++
Sbjct: 141 DGVEITVQKVIHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVE 200
Query: 272 VCEKYKGP----IAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
+ +GP I VH AG+GRTGC I + R+ V+ QLR
Sbjct: 201 EAAQQEGPHCAPIIVHXSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLR 253
>pdb|1WCH|A Chain A, Crystal Structure Of Ptpl1 Human Tyrosine Phosphatase
Mutated In Colorectal Cancer - Evidence For A Second
Phosphotyrosine Substrate Recognition Pocket
Length = 315
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 248 LDHVDF-YFPDGTAP--PNDILCEFIKVCEKY--KGPIAVHCKAGLGRTGCLI 295
+ H++F +PD P P+D+L FI GPI HC AG+GR+G LI
Sbjct: 206 ISHLNFTAWPDHDTPSQPDDLLT-FISYMRHIHRSGPIITHCSAGIGRSGTLI 257
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 193 VPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQ---NGVQLVVRLNQKNYDERKFTEAGLD 249
V + ++A S P++ Q+ +P +F + ++ +++ YDE KF +
Sbjct: 25 VTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFD----N 80
Query: 250 HV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGAYMIK 301
HV D P L +FI + + IA+HCKAG GRTG L+ +++++
Sbjct: 81 HVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKAGKGRTGTLVSSWLLE 138
>pdb|2HVL|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant
pdb|2QDP|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant Crystallized In Ammonium Acetate
Length = 309
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 252 DFYFPDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLGRTGCLIG 296
D P+ P ++ E + E + GPI VH AG+GRTGC I
Sbjct: 206 DHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSSAGIGRTGCFIA 252
>pdb|3D42|A Chain A, Crystal Structure Of Heptp In Complex With A
Monophosphorylated Erk2 Peptide
pdb|3D44|A Chain A, Crystal Structure Of Heptp In Complex With A Dually
Phosphorylated Erk2 Peptide Mimetic
Length = 308
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 252 DFYFPDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLGRTGCLIG 296
D P+ P ++ E + E + GPI VH AG+GRTGC I
Sbjct: 205 DHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSSAGIGRTGCFIA 251
>pdb|1YGR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGU|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
pdb|1YGU|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
Length = 610
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 229 LVVRLNQKNYDERKFTEAGLDHVDF-YFPDGTAPPNDILCEFIKVCEK-------YKGPI 280
++ +LN N E K T + H+ F +PD P + L +K+ + + GPI
Sbjct: 170 IIQKLNIVNKKE-KATGREVTHIQFTSWPDHGVPEDPHL--LLKLRRRVNAFSNFFSGPI 226
Query: 281 AVHCKAGLGRTGCLIG 296
VH AG+GRTG IG
Sbjct: 227 VVHSSAGVGRTGTYIG 242
>pdb|2DXP|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphopeptides
A-(P)y-R
pdb|2I6O|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Phosphopeptides
N-g-(p)y-k-n
pdb|2I6P|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Pnpp
Length = 161
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 234 NQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGC 293
K+Y + GL + PDG P + +K K VH G+GRTG
Sbjct: 46 GDKDYYLSILKKNGLQPLHIPIPDGGVPSDSQFLTIMKWLLSEKEGNLVHSVGGIGRTGT 105
Query: 294 LIGAYMI 300
++ +Y+I
Sbjct: 106 ILASYLI 112
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 255 FPD-GTAPPNDILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIG 296
+PD G D+L F + Y + PI VHC AG+GRTG I
Sbjct: 208 WPDHGVPDTTDLLINFRYLVRDYMKQIPPESPILVHCSAGVGRTGTFIA 256
>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of
Mouse Mrna Capping Enzyme
Length = 210
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 223 LQNGVQLVVRLNQKN--YDERKFTEAGLDHVDFYFPD-GTAPPNDILCEFIKVCEKY--K 277
L+ + L+V L + YD + G+ ++ G P + FI++CE++ +
Sbjct: 57 LKVKMSLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNER 116
Query: 278 GP---IAVHCKAGLGRTGCLIGAYMIKHV 303
P I VHC G RTG LI A++++ +
Sbjct: 117 SPPELIGVHCTHGFNRTGFLICAFLVEKM 145
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 193 VPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQ---NGVQLVVRLNQKNYDERKFTEAGLD 249
V + ++A S P++ Q+ +P +F + ++ +++ YDE KF +
Sbjct: 37 VTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFD----N 92
Query: 250 HV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGAYMIK 301
HV D P L +FI + + IA+HCK G GRTG L+ +++++
Sbjct: 93 HVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLE 150
>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta.
pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
Domain
Length = 291
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 255 FPD-GTAPPNDILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIG 296
+PD G L +F++ Y GP VHC AG+GRTG I
Sbjct: 189 WPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIA 237
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of Human
Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 278 GPIAVHCKAGLGRTGC-LIGAYMIKHVRRRRTV 309
GP+ VHC AG+GRTG ++ M++ ++ + TV
Sbjct: 229 GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTV 261
>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With A Sulfamic Acid
(Soaking Experiment)
pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain Co-Crystallized With A Sulfamic Acid
Inhibitor
pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
Length = 313
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 255 FPD-GTAPPNDILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIG 296
+PD G L +F++ Y GP VHC AG+GRTG I
Sbjct: 208 WPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIA 256
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 193 VPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQ---NGVQLVVRLNQKNYDERKFTEAGLD 249
V + ++A S P++ Q+ +P +F + ++ +++ YDE KF +
Sbjct: 15 VTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFD----N 70
Query: 250 HV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGAYMIK 301
HV D P L +FI + + IA+HCK G GRTG L+ +++++
Sbjct: 71 HVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLE 128
>pdb|2QDM|A Chain A, Crystal Structure Of The Heptp Catalytic Domain
C270sD236AQ314A Mutant
Length = 309
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 256 PDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLGRTGCLIG 296
P+ P ++ E + E + GPI VH AG+GRTGC I
Sbjct: 210 PESAGPLLRLVAEVEESPETAAHPGPIVVHSSAGIGRTGCFIA 252
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 193 VPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQ---NGVQLVVRLNQKNYDERKFTEAGLD 249
V + ++A S P++ Q+ +P +F + ++ +++ YDE KF +
Sbjct: 25 VTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFD----N 80
Query: 250 HV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGAYMIK 301
HV D P L +FI + + IA+HCK G GRTG L+ +++++
Sbjct: 81 HVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLE 138
>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
Length = 295
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 255 FPD-GTAPPNDILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIG 296
+PD G L +F++ Y GP VHC AG+GRTG I
Sbjct: 192 WPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIA 240
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 255 FPDGTAPPNDI-LCEFIKVCEK----YKGPIAVHCKAGLGRTGCLI 295
+PD P I + +F+K + + GPI VHC AG+GRTG I
Sbjct: 196 WPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIVVHCSAGVGRTGTFI 241
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 279 PIAVHCKAGLGRTGCLIG 296
PI VHC AG GRTG I
Sbjct: 520 PITVHCSAGAGRTGTFIA 537
>pdb|2C46|A Chain A, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|B Chain B, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|C Chain C, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|D Chain D, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
Length = 241
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 238 YDERKFTEAGLDHVDFYFPD-GTAPPNDILCEFIKVCEKY--KGP---IAVHCKAGLGRT 291
YD + G+ ++ G P + FI++CE++ + P I VHC G RT
Sbjct: 96 YDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRT 155
Query: 292 GCLIGAYMIKHV 303
G LI A++++ +
Sbjct: 156 GFLICAFLVEKM 167
>pdb|2PBN|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma
Length = 313
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 278 GPIAVHCKAGLGRTGC-LIGAYMIKHVRRRRTV 309
GP+ VHC AG+GRTG ++ M++ ++ + TV
Sbjct: 237 GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTV 269
>pdb|2H4V|A Chain A, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
pdb|2H4V|B Chain B, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
Length = 320
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 278 GPIAVHCKAGLGRTGC-LIGAYMIKHVRRRRTV 309
GP+ VHC AG+GRTG ++ M++ ++ + TV
Sbjct: 247 GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTV 279
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 256 PD-GTAPPNDILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRR 307
PD G D+L F + Y + PI VHC AG+GRTG I +I +
Sbjct: 209 PDHGVPDTTDLLINFRYLVRDYMKQSPPESPILVHCSAGVGRTGTFIAIDRLIYQIENEN 268
Query: 308 TV 309
TV
Sbjct: 269 TV 270
>pdb|3QCL|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-(4-Hydroxybut-1-Yn-1-
Yl)benzoic Acid
pdb|3QCN|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Trigonal Crystal Form
Length = 310
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 278 GPIAVHCKAGLGRTGC-LIGAYMIKHVRRRRTV 309
GP+ VHC AG+GRTG ++ M++ ++ + TV
Sbjct: 236 GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTV 268
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 281 AVHCKAGLGRTGCLIGAYMI 300
A+HCKAG GRTG +I AY++
Sbjct: 115 AIHCKAGKGRTGVMICAYLL 134
>pdb|3QCB|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCB|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCC|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCC|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCD|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Trigonal Crystal Form
pdb|3QCE|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCE|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCF|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCF|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCG|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3-Bromo-4-Chlorobenzyl)sulfanyl]thiophene-2-
Carboxylic Acid
pdb|3QCH|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]-N-(Methylsulfonyl)
Thiophene-2-Carboxamide
pdb|3QCI|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
N-[(3-Aminophenyl)sulfonyl]-3-[(3,4-Dichlorobenzyl)
Sulfanyl]thiophene-2-Carboxamide
pdb|3QCJ|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
5-[({3-[(3,4-Dichlorobenzyl)sulfanyl]thiophen-2-
Yl}carbonyl)sulfamoyl]-2-Methoxybenzoic Acid
pdb|3QCK|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]benzoic Acid
Length = 310
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 278 GPIAVHCKAGLGRTGC-LIGAYMIKHVRRRRTV 309
GP+ VHC AG+GRTG ++ M++ ++ + TV
Sbjct: 236 GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTV 268
>pdb|3QCM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
pdb|3QCM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
Length = 310
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 278 GPIAVHCKAGLGRTGC-LIGAYMIKHVRRRRTV 309
GP+ VHC AG+GRTG ++ M++ ++ + TV
Sbjct: 236 GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTV 268
>pdb|1YFO|A Chain A, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
pdb|1YFO|B Chain B, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
Length = 302
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 270 IKVCE-KYKGPIAVHCKAGLGRTGCLI 295
+K C +Y G I VHC AG+GRTG +
Sbjct: 217 VKACNPQYAGAIVVHCSAGVGRTGTFV 243
>pdb|3QKP|A Chain A, Protein Tyrosine Phosphatase 1b - Apo W179f Mutant With
Open Wpd-Loop
pdb|3QKQ|A Chain A, Protein Tyrosine Phosphatase 1b - W179f Mutant Bound With
Vanadate
Length = 321
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
FPD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 179 FPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 238
Query: 306 R 306
+
Sbjct: 239 K 239
>pdb|3RGO|A Chain A, Crystal Structure Of Ptpmt1
Length = 157
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 222 FLQNGVQLVVRLNQKNYDER-------KFTEAGLDHVDFYFPDGTAPPNDI-LCEFIKVC 273
L V+ V+ +N++ Y+ R ++ +AG++ + D T P L + ++
Sbjct: 24 VLDENVRGVITMNEE-YETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFA 82
Query: 274 EKYKGP---IAVHCKAGLGRTGCLIGAYMIK 301
KY+ + VHCKAG R+ ++ AY+I+
Sbjct: 83 LKYQALGQCVYVHCKAGRSRSATMVAAYLIQ 113
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 255 FPDGTAP--PNDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMI 300
+PD P P +L ++ ++ + GPI VH AG+GRTG +I M+
Sbjct: 417 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDML 469
>pdb|3S3E|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3E|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3F|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3F|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3H|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3H|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3K|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
pdb|3S3K|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
Length = 307
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 255 FPD-GTAPPNDILCEFIKVCEKYKG----PIAVHCKAGLGRTGCLI 295
+PD G P L F++ G PI VHC AG+GR+G I
Sbjct: 208 WPDFGVPNPPQTLVRFVRAFRDRIGAEQRPIVVHCSAGVGRSGTFI 253
>pdb|1FPR|A Chain A, Crystal Structure Of The Complex Formed Between The
Catalytic Domain Of Shp-1 And An In Vitro Peptide
Substrate Py469 Derived From Shps-1
Length = 284
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 255 FPDGTAP--PNDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMI 300
+PD P P +L ++ ++ + GPI VH AG+GRTG +I M+
Sbjct: 175 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDML 227
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 279 PIAVHCKAGLGRTGCLI 295
PI VHC AG+GRTG LI
Sbjct: 254 PIVVHCSAGVGRTGVLI 270
>pdb|4GRY|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GRZ|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Po4
Length = 288
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 255 FPDGTAP--PNDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMI 300
+PD P P +L ++ ++ + GPI VH AG+GRTG +I M+
Sbjct: 177 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDML 229
>pdb|2OUD|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mkp5
Length = 177
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 280 IAVHCKAGLGRTGCLIGAYMIKHVRRRRT 308
+ +HC+AG+ R+ ++ AY++KH R T
Sbjct: 90 LLIHCQAGVSRSATIVIAYLMKHTRMTMT 118
>pdb|1ZZW|A Chain A, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
pdb|1ZZW|B Chain B, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
Length = 149
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 280 IAVHCKAGLGRTGCLIGAYMIKHVRRRRT 308
+ +HC+AG+ R+ ++ AY++KH R T
Sbjct: 86 LLIHCQAGVSRSATIVIAYLMKHTRMTMT 114
>pdb|2ESB|A Chain A, Crystal Structure Of Human Dusp18
Length = 188
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 262 PNDILCEF-------IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH 302
PN LC+F I E +G +HC AG+ R+ L AY++K+
Sbjct: 75 PNSRLCDFFDPIADHIHSVEMKQGRTLLHCAAGVSRSAALCLAYLMKY 122
>pdb|3A5K|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 304
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 185 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 244
Query: 306 R 306
+
Sbjct: 245 K 245
>pdb|3B7O|A Chain A, Crystal Structure Of The Human Tyrosine Phosphatase Shp2
(Ptpn11) With An Accessible Active Site
Length = 316
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG 292
+PD P P +L +V K + GP+ VHC AG+GRTG
Sbjct: 210 WPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTG 254
>pdb|1NWL|A Chain A, Crystal Structure Of The Ptp1b Complexed With
Sp7343-Sp7964, A Ptyr Mimetic
pdb|1NWE|A Chain A, Ptp1b R47c Modified At C47 With N-[4-(2-{2-[3-(2-Bromo-
Acetylamino)-Propionylamino]-3-Hydroxy-Propionylamino}-
Ethyl)-Phenyl]-Oxalamic Acid
Length = 298
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 238
Query: 306 R 306
+
Sbjct: 239 K 239
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTGCL 294
+PD P P +L +V K + GP+ VHC AG+GRTG
Sbjct: 423 WPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTF 469
>pdb|2HY3|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
pdb|2HY3|B Chain B, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
Length = 313
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 278 GPIAVHCKAGLGRTGCLI 295
GP+ VHC AG+GRTG I
Sbjct: 237 GPVLVHCSAGVGRTGTYI 254
>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene
Inhibitor
pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
Inhibitor.
pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
Inhibitor
pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
Length = 299
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 238
Query: 306 R 306
+
Sbjct: 239 K 239
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 278 GPIAVHCKAGLGRTG--CLIGAYMIKHVRRR 306
GP+ VHC AG+GR+G CL ++ +R+
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCLLLMDKRK 239
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
(R47v, D48n) Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 238
Query: 306 R 306
+
Sbjct: 239 K 239
>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
Length = 299
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 238
Query: 306 R 306
+
Sbjct: 239 K 239
>pdb|3O5X|A Chain A, Crystal Structure Of The Oncogenic Tyrosine Phosphatase
Shp2 Complexed With A Salicylic Acid-Based Small
Molecule Inhibitor
pdb|3MOW|A Chain A, Crystal Structure Of Shp2 In Complex With A Tautomycetin
Analog Ttn D- 1
Length = 276
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG 292
+PD P P +L +V K + GP+ VHC AG+GRTG
Sbjct: 163 WPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTG 207
>pdb|1Q6J|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|1Q6M|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 3
pdb|1Q6N|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6N|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6P|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6P|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6S|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6S|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6T|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|1Q6T|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|2FJN|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJN|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 278 GPIAVHCKAGLGRTG--CLIGAYMIKHVRRR 306
GP+ VHC AG+GR+G CL ++ +R+
Sbjct: 221 GPVVVHCSAGIGRSGTFCLADTCLLLMDKRK 251
>pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Acid
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-
Thieno[2,3-C]pyridine-3-Carboxylic Acid
Length = 298
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 238
Query: 306 R 306
+
Sbjct: 239 K 239
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 238
Query: 306 R 306
+
Sbjct: 239 K 239
>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 327
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 185 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 244
Query: 306 R 306
+
Sbjct: 245 K 245
>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 12 Using A Linked-Fragment Strategy
pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 23 Using A Linked-fragment Strategy
pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 5 Using A Linked-fragment Strategy
pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine
Phosphatase 1b Using A Second Phosphotyrosine Binding
Site, Complexed With Compound 19.
pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 17
pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 8b
pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
Sulfenyl-Amide Bond
pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
Potent And Selective Bidentate Inhibitor Compound 2
pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b
Targeting The Second Phosphotyrosine Site
pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase
1b Inhibitor Using A Linked Fragment Strategy And A
Malonate Head On The First Site
pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
Ptp1b Inhibitors
pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
Protein Tyrosine Phosphatase 1b
pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Compound Lzp-6
pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Inhibitor Lzp-25
pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo First Catalytic Step
pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo Second Catalytic Step
Length = 321
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 238
Query: 306 R 306
+
Sbjct: 239 K 239
>pdb|2FJM|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJM|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 278 GPIAVHCKAGLGRTG--CLIGAYMIKHVRRR 306
GP+ VHC AG+GR+G CL ++ +R+
Sbjct: 221 GPVVVHCSAGIGRSGTFCLADTCLLLMDKRK 251
>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
Length = 298
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 238
Query: 306 R 306
+
Sbjct: 239 K 239
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-dioxo-1h-
Benzo[d]isothiazol-3-yloxymethyl)-2-(oxalyl-amino)-4,7-
Dihydro-5h-thieno[2,3-c]pyran-3-carboxylic Acid
Length = 321
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 238
Query: 306 R 306
+
Sbjct: 239 K 239
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 238
Query: 306 R 306
+
Sbjct: 239 K 239
>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
Length = 298
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 238
Query: 306 R 306
+
Sbjct: 239 K 239
>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
Length = 304
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 185 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 244
Query: 306 R 306
+
Sbjct: 245 K 245
>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
Length = 302
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 183 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 242
Query: 306 R 306
+
Sbjct: 243 K 243
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 178 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 237
Query: 306 R 306
+
Sbjct: 238 K 238
>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
Length = 300
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 181 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 240
Query: 306 R 306
+
Sbjct: 241 K 241
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 191 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 250
Query: 306 R 306
+
Sbjct: 251 K 251
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK---GPIAVHCKAGLGRTGCLI 295
+PD P +D L EF+ + P+ VHC AG+GRTG L+
Sbjct: 183 WPDHGVPDDSSDFL-EFVNYVRSLRVDSEPVLVHCSAGIGRTGVLV 227
>pdb|2NZ6|A Chain A, Crystal Structure Of The Ptprj Inactivating Mutant C1239s
Length = 316
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 255 FPD-GTAPPNDILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRR 306
+PD G D+L F + Y + PI VH AG+GRTG I +I +
Sbjct: 208 WPDHGVPDTTDLLINFRYLVRDYMKQSPPESPILVHSSAGVGRTGTFIAIDRLIYQIENE 267
Query: 307 RTV 309
TV
Sbjct: 268 NTV 270
>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
Length = 290
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 186 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 245
Query: 306 R 306
+
Sbjct: 246 K 246
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 193 VPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQ---NGVQLVVRLNQKNYDERKFTEAGLD 249
V + ++A S P++ Q+ +P +F + ++ +++ YDE KF +
Sbjct: 30 VTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFD----N 85
Query: 250 HV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGAYMIK 301
HV D P L +FI + + IA+H K G GRTG L+ +++++
Sbjct: 86 HVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLE 143
>pdb|3V0D|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0D|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0F|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0F|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0G|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|C Chain C, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|D Chain D, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0H|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
pdb|3V0H|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
Length = 339
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 193 VPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQ---NGVQLVVRLNQKNYDERKFTEAGLD 249
V + ++A S P++ Q+ +P +F + ++ +++ YDE KF +
Sbjct: 30 VTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFD----N 85
Query: 250 HV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGAYMIK 301
HV D P L +FI + + IA+H K G GRTG L+ +++++
Sbjct: 86 HVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLE 143
>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Inhibitor
[(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
Length = 354
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VHC AG+GR+G CL ++ +R
Sbjct: 213 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR 272
Query: 306 R 306
+
Sbjct: 273 K 273
>pdb|3V0E|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576(C363s)
Length = 324
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 193 VPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQ---NGVQLVVRLNQKNYDERKFTEAGLD 249
V + ++A S P++ Q+ +P +F + ++ +++ YDE KF +
Sbjct: 15 VTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFD----N 70
Query: 250 HV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGAYMIK 301
HV D P L +FI + + IA+H K G GRTG L+ +++++
Sbjct: 71 HVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLE 128
>pdb|3F99|A Chain A, W354f Yersinia Enterocolitica Ptpase Apo Form
pdb|3F9A|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Tungstate
pdb|3F9B|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Divanadate
Length = 306
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 22/86 (25%)
Query: 255 FPDGTAPPNDILCEFIKVCEK----------YKGPIAV----------HCKAGLGRTGCL 294
FPD TA +++ + ++ KG AV HC+AG+GRT L
Sbjct: 192 FPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL 251
Query: 295 IGAYMIKHVRRRRTVLTKRNQYHQLR 320
IGA + R + L+ + Q+R
Sbjct: 252 IGAMCMND--SRNSQLSVEDMVSQMR 275
>pdb|1PA9|A Chain A, Yersinia Protein-Tyrosine Phosphatase Complexed With Pncs
(Yop51,Pasteurella X,Ptpase,Yop51delta162) (Catalytic
Domain, Residues 163-468) Mutant With Cys 235 Replaced
By Arg (C235r)
Length = 284
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 282 VHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
+HC+AG+GRT LIGA + R + L+ + Q+R
Sbjct: 217 IHCRAGVGRTAQLIGAMCMND--SRNSQLSVEDMVSQMR 253
>pdb|1I9T|A Chain A, Crystal Structure Of The Oxidized Rna Triphosphatase
Domain Of Mouse Mrna Capping Enzyme
Length = 210
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 223 LQNGVQLVVRLNQKN--YDERKFTEAGLDHVDFYFPD-GTAPPNDILCEFIKVCEKY--K 277
L+ + L+V L + YD + G+ ++ G P + FI++CE++ +
Sbjct: 57 LKVKMSLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNER 116
Query: 278 GP---IAVHCKAGLGRTGCLIGAYMIKHV 303
P I VH G RTG LI A++++ +
Sbjct: 117 SPPELIGVHXTHGFNRTGFLICAFLVEKM 145
>pdb|3U96|A Chain A, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
pdb|3U96|B Chain B, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
Length = 306
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 282 VHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
+HC+AG+GRT LIGA + R + L+ + Q+R
Sbjct: 239 IHCRAGVGRTAQLIGAMCMND--SRNSQLSVEDMVSQMR 275
>pdb|1XXV|A Chain A, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
pdb|1XXV|B Chain B, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
Length = 306
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 282 VHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
+HC+AG+GRT LIGA + R + L+ + Q+R
Sbjct: 239 IHCRAGVGRTAQLIGAMCMND--SRNSQLSVEDMVSQMR 275
>pdb|1QZ0|A Chain A, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|1QZ0|B Chain B, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|2I42|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
Complexed With Vanadate, A Transition State Analogue
pdb|1YTN|A Chain A, Hydrolase
pdb|1YTW|A Chain A, Yersinia Ptpase Complexed With Tungstate
pdb|2Y2F|A Chain A, Crystal Structure Of Yersinia Pestis Yoph In Complex With
An Aminooxy-Containing Platform Compound For Inhibitor
Design
pdb|2YDU|A Chain A, Crystal Structure Of Yoph In Complex With
3-(1,1-Dioxido-3-Oxoisothiazolidin-5-Yl)benzaldeyde
Length = 306
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 282 VHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
+HC+AG+GRT LIGA + R + L+ + Q+R
Sbjct: 239 IHCRAGVGRTAQLIGAMCMND--SRNSQLSVEDMVSQMR 275
>pdb|1YPT|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|1YPT|B Chain B, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|3BLU|A Chain A, Crystal Structure Yoph Complexed With Inhibitor Pvs
pdb|3BLT|A Chain A, Crystal Structures Of Yoph Complexed With Pvsn And Pvs,
Inhibitors Of Yoph Which Co-Valent Bind To Cys Of Active
Site
Length = 305
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 282 VHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
+HC+AG+GRT LIGA + R + L+ + Q+R
Sbjct: 238 IHCRAGVGRTAQLIGAMCMND--SRNSQLSVEDMVSQMR 274
>pdb|2J16|B Chain B, Apo & Sulphate Bound Forms Of Sdp-1
Length = 182
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 266 LCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH 302
L I + I +HC+ GL R+ LI AY++K+
Sbjct: 106 LTSIIHAATTKREKILIHCQCGLSRSATLIIAYIMKY 142
>pdb|1XRI|A Chain A, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|1XRI|B Chain B, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|2Q47|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
pdb|2Q47|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
Length = 151
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 279 PIAVHCKAGLGRTGCLIG 296
P+ +HCK G RTGCL+G
Sbjct: 94 PVLIHCKRGKHRTGCLVG 111
>pdb|3BM8|A Chain A, Crystal Structure Of Yoph Mutant D356a Complexed With
Irreversible Inhibitor Pvsn
Length = 305
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 282 VHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
+HC+AG+GRT LIGA + R + L+ + Q+R
Sbjct: 238 IHCRAGVGRTAQLIGAMCMND--SRNSQLSVEDMVSQMR 274
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 255 FPDGTAPPN-DILCEFIKVCEKYKG----PIAVHCKAGLGRTGCL 294
+PD P + D + ++ + +G P+ VHC AG GRTG L
Sbjct: 199 WPDRGVPSSPDHMLAMVEEARRLQGSGPEPLCVHCSAGCGRTGVL 243
>pdb|3H2X|A Chain A, Crystal Structure Of The Human Lymphoid Tyrosine
Phosphatase Catalytic Domain
Length = 302
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 255 FPDGTAPPN-DILCEFIKVCEKYKG----PIAVHCKAGLGRTGCL 294
+PD P + D + E I Y+ PI +HC AG GRTG +
Sbjct: 193 WPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCSAGCGRTGVI 237
>pdb|2P6X|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
pdb|2P6X|B Chain B, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
Length = 309
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 255 FPDGTAPPN-DILCEFIKVCEKYKG----PIAVHCKAGLGRTGCL 294
+PD P + D + E I Y+ PI +HC AG GRTG +
Sbjct: 193 WPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCSAGCGRTGVI 237
>pdb|2F9Y|B Chain B, The Crystal Structure Of The Carboxyltransferase Subunit
Of Acc From Escherichia Coli
Length = 304
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 186 FGDISWIVPNKLLAFSGPNTTEQNTCYH-PPEFYLDYFL--QNGVQLVVR 232
GD++ P L+ F+GP EQ PP F FL + + ++VR
Sbjct: 213 LGDLNIAEPKALIGFAGPRVIEQTVREKLPPGFQRSEFLIEKGAIDMIVR 262
>pdb|2QCJ|A Chain A, Native Structure Of Lyp
pdb|2QCJ|B Chain B, Native Structure Of Lyp
pdb|2QCT|A Chain A, Structure Of Lyp With Inhibitor I-C11
pdb|2QCT|B Chain B, Structure Of Lyp With Inhibitor I-C11
Length = 313
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 255 FPDGTAPPN-DILCEFIKVCEKYKG----PIAVHCKAGLGRTGCL 294
+PD P + D + E I Y+ PI +HC AG GRTG +
Sbjct: 212 WPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCSAGCGRTGVI 256
>pdb|2PA5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|2PA5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|4GE2|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE2|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE6|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
pdb|4GE6|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
Length = 314
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 279 PIAVHCKAGLGRTG 292
PI VHC AG+GRTG
Sbjct: 235 PIVVHCSAGIGRTG 248
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG 292
+PD P P L KV E GP +HC AG+GR+G
Sbjct: 180 WPDFGVPESPASFLNFLFKVRESGSLNPDHGPAVIHCSAGIGRSG 224
>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
Length = 298
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 255 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMIKHVRR 305
+PD P P L KV E GP+ VH AG+GR+G CL ++ +R
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHASAGIGRSGTFCLADTCLLLMDKR 238
Query: 306 R 306
+
Sbjct: 239 K 239
>pdb|2I1Y|A Chain A, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
pdb|2I1Y|B Chain B, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
Length = 301
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 257 DGTAPPNDILCEFIKVCEK-YKG---PIAVHCKAGLGRTGCLIGAYMI 300
+GT L +F + K Y+G PI VHC G GRTG I M+
Sbjct: 200 EGTPASTRPLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMV 247
>pdb|1P15|A Chain A, Crystal Structure Of The D2 Domain Of Rptpa
pdb|1P15|B Chain B, Crystal Structure Of The D2 Domain Of Rptpa
Length = 253
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 279 PIAVHCKAGLGRTG 292
PI VHC AG GRTG
Sbjct: 178 PITVHCSAGAGRTG 191
>pdb|2WGP|A Chain A, Crystal Structure Of Human Dual Specificity Phosphatase 14
pdb|2WGP|B Chain B, Crystal Structure Of Human Dual Specificity Phosphatase 14
Length = 190
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 264 DILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK 301
D + + I + G VHC AG+ R+ L AY++K
Sbjct: 90 DTVADKIHSVSRKHGATLVHCAAGVSRSATLCIAYLMK 127
>pdb|2Y96|A Chain A, Structure Of Human Dual-Specificity Phosphatase 27
pdb|2Y96|B Chain B, Structure Of Human Dual-Specificity Phosphatase 27
Length = 219
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 280 IAVHCKAGLGRTGCLIGAYMIKH-----------VRRRRTVLTKRNQYHQLR 320
I VHC G R+ L+ AY++ H V + R VL R QLR
Sbjct: 142 ILVHCVMGRSRSATLVLAYLMIHKDMTLVDAIQQVAKNRCVLPNRGFLKQLR 193
>pdb|2NT2|A Chain A, Crystal Structure Of Slingshot Phosphatase 2
pdb|2NT2|B Chain B, Crystal Structure Of Slingshot Phosphatase 2
pdb|2NT2|C Chain C, Crystal Structure Of Slingshot Phosphatase 2
Length = 145
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 268 EFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK-----------HVRRRRTV 309
+FI +K+ VH K G+ R+ + AY +K +V+ RRTV
Sbjct: 72 KFISKAKKHGSKCLVHSKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTV 124
>pdb|2E0T|A Chain A, Crystal Structure Of Catalytic Domain Of Dual Specificity
Phosphatase 26, Ms0830 From Homo Sapiens
Length = 151
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 267 CEFI-KVCEKYKGPIAVHCKAGLGRTGCLIGAYM-----------IKHVRRRRTVLTKRN 314
+FI + + G I VHC G+ R+ L+ AY+ IK V+ R ++ R
Sbjct: 74 ADFIHRALSQPGGKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHRGIIPNRG 133
Query: 315 QYHQL 319
QL
Sbjct: 134 FLRQL 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,112,106
Number of Sequences: 62578
Number of extensions: 410447
Number of successful extensions: 944
Number of sequences better than 100.0: 136
Number of HSP's better than 100.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 145
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)