Query psy3113
Match_columns 328
No_of_seqs 338 out of 1906
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 16:46:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14671 DSPn: Dual specificit 100.0 2.5E-62 5.4E-67 415.0 12.2 141 19-162 1-141 (141)
2 KOG1720|consensus 100.0 2.6E-52 5.6E-57 369.2 14.0 188 137-328 1-194 (225)
3 PTZ00393 protein tyrosine phos 99.9 1.4E-26 3E-31 211.5 14.0 139 171-327 74-215 (241)
4 PTZ00242 protein tyrosine phos 99.9 3.8E-24 8.2E-29 187.7 14.8 129 186-326 8-143 (166)
5 smart00195 DSPc Dual specifici 99.8 2.6E-19 5.7E-24 151.0 14.3 113 190-317 2-118 (138)
6 cd00127 DSPc Dual specificity 99.8 9.1E-19 2E-23 147.0 13.7 116 189-317 2-121 (139)
7 KOG2836|consensus 99.8 7E-18 1.5E-22 140.6 12.5 103 214-317 29-136 (173)
8 PF00782 DSPc: Dual specificit 99.7 1.8E-17 3.9E-22 138.6 10.8 99 219-317 11-113 (133)
9 KOG1718|consensus 99.7 2.5E-16 5.4E-21 136.0 12.6 126 185-325 13-142 (198)
10 PRK12361 hypothetical protein; 99.6 1.5E-15 3.3E-20 155.8 14.3 125 188-324 94-223 (547)
11 KOG1719|consensus 99.6 3.4E-16 7.3E-21 133.4 7.7 108 218-325 43-159 (183)
12 PF05706 CDKN3: Cyclin-depende 99.6 1.6E-15 3.5E-20 131.8 10.3 125 186-311 26-168 (168)
13 KOG1717|consensus 99.6 1.5E-15 3.4E-20 139.4 10.6 105 218-324 189-298 (343)
14 COG2453 CDC14 Predicted protei 99.6 7.2E-15 1.6E-19 130.4 10.7 87 238-328 63-153 (180)
15 KOG1716|consensus 99.6 2.7E-14 5.8E-19 135.5 13.3 126 187-324 73-202 (285)
16 PF03162 Y_phosphatase2: Tyros 99.5 7.6E-14 1.7E-18 122.3 10.8 119 185-316 3-129 (164)
17 KOG2283|consensus 99.5 7.5E-14 1.6E-18 138.7 10.1 133 186-324 12-153 (434)
18 PHA02740 protein tyrosine phos 99.5 2.8E-13 6.1E-18 129.3 10.5 129 189-328 81-273 (298)
19 PHA02742 protein tyrosine phos 99.4 5.9E-13 1.3E-17 127.4 10.6 124 194-328 92-281 (303)
20 cd00047 PTPc Protein tyrosine 99.4 1.7E-12 3.6E-17 118.7 12.7 124 194-328 40-218 (231)
21 smart00194 PTPc Protein tyrosi 99.4 2.4E-12 5.2E-17 119.7 13.1 123 195-328 69-245 (258)
22 PHA02746 protein tyrosine phos 99.4 1E-12 2.2E-17 126.9 10.0 129 189-328 103-299 (323)
23 smart00012 PTPc_DSPc Protein t 99.4 1.6E-12 3.5E-17 102.9 8.7 76 249-328 4-92 (105)
24 smart00404 PTPc_motif Protein 99.4 1.6E-12 3.5E-17 102.9 8.7 76 249-328 4-92 (105)
25 PHA02747 protein tyrosine phos 99.4 1.6E-12 3.5E-17 124.9 9.8 129 189-328 83-281 (312)
26 TIGR01244 conserved hypothetic 99.4 9.4E-12 2E-16 105.6 12.9 96 218-316 19-123 (135)
27 PLN02727 NAD kinase 99.3 3.2E-11 7E-16 127.3 17.3 160 150-310 184-374 (986)
28 PHA02738 hypothetical protein; 99.3 2.9E-12 6.3E-17 123.5 8.8 130 188-328 79-279 (320)
29 PRK15375 pathogenicity island 99.3 2.5E-11 5.4E-16 121.3 13.5 130 190-328 329-515 (535)
30 PF13350 Y_phosphatase3: Tyros 99.2 5.8E-11 1.3E-15 103.5 9.7 114 191-314 15-160 (164)
31 KOG0792|consensus 99.2 4.9E-11 1.1E-15 126.1 8.3 123 195-328 938-1115(1144)
32 KOG0790|consensus 99.2 1.8E-11 3.9E-16 119.4 4.1 105 220-328 374-506 (600)
33 PF04273 DUF442: Putative phos 99.2 2.5E-10 5.4E-15 93.7 9.9 96 188-297 1-105 (110)
34 COG5599 PTP2 Protein tyrosine 99.1 1.9E-10 4.1E-15 106.2 7.9 127 195-328 92-279 (302)
35 PF00102 Y_phosphatase: Protei 99.1 6E-10 1.3E-14 100.8 9.8 130 188-328 31-222 (235)
36 KOG2386|consensus 99.0 1.2E-09 2.5E-14 106.9 9.3 125 192-316 21-163 (393)
37 KOG0791|consensus 98.9 8.7E-09 1.9E-13 99.1 10.3 126 195-328 165-339 (374)
38 KOG0793|consensus 98.8 7.5E-09 1.6E-13 105.7 8.6 126 196-328 804-980 (1004)
39 PF14566 PTPlike_phytase: Inos 98.8 7.4E-09 1.6E-13 89.3 4.9 66 236-301 81-148 (149)
40 KOG4228|consensus 98.8 4.8E-09 1E-13 112.2 4.5 132 189-328 598-782 (1087)
41 KOG1572|consensus 98.7 9.1E-08 2E-12 87.4 10.5 97 218-315 77-185 (249)
42 KOG0789|consensus 98.5 9.1E-08 2E-12 94.4 5.9 75 250-328 267-352 (415)
43 COG3453 Uncharacterized protei 98.5 1.6E-06 3.4E-11 71.5 11.1 100 214-317 17-125 (130)
44 COG2365 Protein tyrosine/serin 98.2 1.7E-06 3.7E-11 80.7 6.3 96 219-314 68-173 (249)
45 KOG4228|consensus 98.2 2.1E-06 4.5E-11 92.4 6.1 124 194-328 894-1070(1087)
46 PF00782 DSPc: Dual specificit 98.2 1.2E-05 2.5E-10 66.9 9.2 64 60-130 50-113 (133)
47 PTZ00242 protein tyrosine phos 98.0 3.2E-05 6.9E-10 67.9 8.8 72 54-130 66-138 (166)
48 KOG1720|consensus 97.8 7.3E-05 1.6E-09 67.5 8.2 69 53-129 118-186 (225)
49 KOG1716|consensus 97.8 0.00013 2.7E-09 69.5 10.1 107 17-130 73-195 (285)
50 smart00195 DSPc Dual specifici 97.8 0.00015 3.2E-09 60.8 8.9 59 65-130 60-118 (138)
51 COG2453 CDC14 Predicted protei 97.7 0.00013 2.8E-09 64.7 8.5 68 54-128 76-144 (180)
52 PTZ00393 protein tyrosine phos 97.7 0.00015 3.3E-09 67.1 8.1 69 53-130 141-209 (241)
53 COG5350 Predicted protein tyro 97.6 0.00092 2E-08 57.7 11.1 100 216-315 21-132 (172)
54 KOG1719|consensus 97.6 0.00024 5.1E-09 61.4 6.9 63 61-130 87-149 (183)
55 KOG1718|consensus 97.4 0.00033 7.1E-09 61.4 6.4 58 72-137 83-140 (198)
56 cd00127 DSPc Dual specificity 97.4 0.00065 1.4E-08 56.5 8.1 65 59-130 56-121 (139)
57 PRK12361 hypothetical protein; 97.2 0.0013 2.9E-08 67.9 8.3 71 59-137 151-222 (547)
58 KOG2283|consensus 95.8 0.0077 1.7E-07 60.6 3.7 108 18-130 14-148 (434)
59 PF14671 DSPn: Dual specificit 95.7 0.023 5E-07 48.7 5.5 62 255-316 38-109 (141)
60 smart00404 PTPc_motif Protein 95.6 0.11 2.3E-06 40.4 8.7 60 53-117 6-66 (105)
61 smart00012 PTPc_DSPc Protein t 95.6 0.11 2.3E-06 40.4 8.7 60 53-117 6-66 (105)
62 PF05706 CDKN3: Cyclin-depende 94.7 0.1 2.2E-06 45.9 6.7 59 58-124 108-168 (168)
63 KOG2386|consensus 92.9 0.069 1.5E-06 52.9 2.5 66 64-134 101-167 (393)
64 cd00047 PTPc Protein tyrosine 92.4 0.77 1.7E-05 41.6 8.6 72 53-130 134-211 (231)
65 PLN02160 thiosulfate sulfurtra 91.8 0.88 1.9E-05 38.4 7.8 85 214-306 18-107 (136)
66 TIGR03865 PQQ_CXXCW PQQ-depend 91.7 2.2 4.8E-05 37.1 10.4 95 207-306 32-143 (162)
67 KOG4471|consensus 91.5 0.29 6.4E-06 50.6 5.1 29 271-299 368-396 (717)
68 KOG1717|consensus 90.8 0.84 1.8E-05 43.2 7.0 78 46-130 212-291 (343)
69 PF04179 Init_tRNA_PT: Initiat 88.6 2.3 4.9E-05 43.3 8.8 79 226-305 318-404 (451)
70 cd01518 RHOD_YceA Member of th 88.5 1.7 3.7E-05 34.0 6.4 29 275-306 59-87 (101)
71 PF06602 Myotub-related: Myotu 86.7 1.2 2.5E-05 43.9 5.3 29 272-300 226-254 (353)
72 TIGR01244 conserved hypothetic 86.6 5.4 0.00012 33.5 8.7 55 64-130 70-124 (135)
73 PF00581 Rhodanese: Rhodanese- 86.6 3.3 7.1E-05 32.3 7.0 87 214-306 1-98 (113)
74 smart00194 PTPc Protein tyrosi 85.5 5 0.00011 37.0 8.8 71 53-130 162-238 (258)
75 cd01523 RHOD_Lact_B Member of 84.9 3.4 7.3E-05 32.2 6.2 28 276-306 60-87 (100)
76 cd01533 4RHOD_Repeat_2 Member 84.3 5.5 0.00012 31.6 7.4 79 213-306 12-92 (109)
77 PF00102 Y_phosphatase: Protei 83.2 3.3 7.1E-05 36.9 6.3 60 50-115 136-195 (235)
78 COG0607 PspE Rhodanese-related 81.7 5.5 0.00012 31.0 6.4 76 219-308 12-89 (110)
79 PF03162 Y_phosphatase2: Tyros 81.0 4.6 9.9E-05 35.3 6.1 58 61-128 71-128 (164)
80 cd01522 RHOD_1 Member of the R 79.2 16 0.00035 29.5 8.5 85 214-306 2-90 (117)
81 cd01519 RHOD_HSP67B2 Member of 77.0 5.9 0.00013 30.9 5.2 85 215-306 3-92 (106)
82 KOG1089|consensus 74.4 4.5 9.8E-05 42.1 4.7 23 276-298 343-365 (573)
83 PRK01415 hypothetical protein; 73.8 21 0.00045 33.5 8.6 79 212-306 113-197 (247)
84 cd01448 TST_Repeat_1 Thiosulfa 72.8 10 0.00023 30.4 5.7 46 259-306 60-106 (122)
85 PRK00142 putative rhodanese-re 72.4 10 0.00022 36.7 6.4 80 211-306 112-197 (314)
86 PRK00162 glpE thiosulfate sulf 71.4 22 0.00048 28.0 7.2 77 213-306 7-84 (108)
87 cd01520 RHOD_YbbB Member of th 71.1 27 0.00058 28.6 7.9 29 276-306 85-113 (128)
88 cd01528 RHOD_2 Member of the R 70.5 18 0.00038 28.1 6.4 78 214-306 3-84 (101)
89 PRK15375 pathogenicity island 66.6 25 0.00055 36.3 8.0 74 52-130 426-507 (535)
90 cd01526 RHOD_ThiF Member of th 65.9 28 0.00061 28.1 7.0 28 275-305 70-97 (122)
91 cd01444 GlpE_ST GlpE sulfurtra 62.7 39 0.00084 25.5 6.9 37 266-306 46-82 (96)
92 KOG1530|consensus 60.7 37 0.00079 28.9 6.6 78 218-306 29-115 (136)
93 cd01443 Cdc25_Acr2p Cdc25 enzy 60.6 27 0.00058 27.8 5.8 19 276-294 65-83 (113)
94 COG2089 SpsE Sialic acid synth 60.4 23 0.0005 34.6 6.1 99 174-288 75-186 (347)
95 PRK05600 thiamine biosynthesis 58.1 20 0.00043 35.5 5.4 84 213-306 273-358 (370)
96 PLN02727 NAD kinase 53.9 32 0.00068 38.2 6.5 62 52-123 313-374 (986)
97 cd01532 4RHOD_Repeat_1 Member 53.3 22 0.00047 27.3 3.9 30 276-306 49-78 (92)
98 PRK05320 rhodanese superfamily 53.2 44 0.00096 31.3 6.7 28 276-306 174-201 (257)
99 PF04343 DUF488: Protein of un 49.6 23 0.00049 29.0 3.7 41 215-255 2-52 (122)
100 cd01310 TatD_DNAse TatD like p 47.8 1.6E+02 0.0034 26.3 9.3 24 264-287 108-131 (251)
101 cd01534 4RHOD_Repeat_3 Member 46.5 43 0.00093 25.6 4.7 28 276-306 55-82 (95)
102 PHA02740 protein tyrosine phos 45.3 58 0.0013 31.2 6.3 57 52-113 181-244 (298)
103 TIGR02981 phageshock_pspE phag 45.0 42 0.00092 26.6 4.5 29 275-306 56-84 (101)
104 COG2099 CobK Precorrin-6x redu 44.1 1.9E+02 0.0041 27.3 9.2 54 194-256 173-231 (257)
105 COG5599 PTP2 Protein tyrosine 43.6 35 0.00076 32.5 4.3 44 52-99 188-231 (302)
106 cd01529 4RHOD_Repeats Member o 41.7 35 0.00075 26.1 3.5 29 275-306 54-82 (96)
107 cd05567 PTS_IIB_mannitol PTS_I 41.0 30 0.00066 26.5 3.0 20 279-299 2-21 (87)
108 PRK09875 putative hydrolase; P 40.7 1.7E+02 0.0037 28.0 8.7 36 270-308 145-180 (292)
109 cd01531 Acr2p Eukaryotic arsen 40.6 1.6E+02 0.0036 23.1 7.4 18 276-293 61-78 (113)
110 cd01449 TST_Repeat_2 Thiosulfa 37.7 90 0.0019 24.6 5.5 44 260-306 60-104 (118)
111 PRK10287 thiosulfate:cyanide s 37.7 60 0.0013 26.0 4.3 28 276-306 59-86 (104)
112 cd01447 Polysulfide_ST Polysul 36.7 42 0.00092 25.6 3.3 29 275-306 59-87 (103)
113 cd01525 RHOD_Kc Member of the 36.5 48 0.001 25.5 3.6 27 277-306 65-91 (105)
114 PF02126 PTE: Phosphotriestera 36.1 93 0.002 30.0 6.1 32 275-308 153-184 (308)
115 COG5350 Predicted protein tyro 35.0 76 0.0016 27.9 4.7 81 59-158 73-153 (172)
116 PHA02747 protein tyrosine phos 34.5 2.5E+02 0.0053 27.0 8.8 57 52-113 187-252 (312)
117 PF02571 CbiJ: Precorrin-6x re 34.2 1.3E+02 0.0029 28.0 6.7 72 194-274 171-248 (249)
118 cd01521 RHOD_PspE2 Member of t 32.3 1.7E+02 0.0037 22.9 6.3 29 276-306 63-92 (110)
119 PF13350 Y_phosphatase3: Tyros 32.1 1.4E+02 0.0031 25.4 6.1 46 72-125 113-158 (164)
120 COG3958 Transketolase, C-termi 31.7 1.2E+02 0.0026 29.3 5.9 93 219-315 211-309 (312)
121 PF04273 DUF442: Putative phos 31.6 95 0.0021 25.2 4.6 39 52-99 60-98 (110)
122 PRK09629 bifunctional thiosulf 31.5 1.6E+02 0.0035 31.2 7.5 86 214-306 12-108 (610)
123 PF09334 tRNA-synt_1g: tRNA sy 30.7 1.1E+02 0.0023 30.6 5.7 60 60-128 10-71 (391)
124 PF14756 Pdase_C33_assoc: Pept 30.2 65 0.0014 26.9 3.4 48 118-195 95-142 (147)
125 PRK09629 bifunctional thiosulf 29.8 1E+02 0.0023 32.6 5.7 46 258-306 203-249 (610)
126 PRK01045 ispH 4-hydroxy-3-meth 29.4 1.1E+02 0.0023 29.6 5.2 69 213-287 41-123 (298)
127 PRK08057 cobalt-precorrin-6x r 28.7 2.5E+02 0.0055 26.2 7.5 97 150-257 115-225 (248)
128 COG4646 DNA methylase [Transcr 28.6 16 0.00034 37.4 -0.6 14 52-65 155-168 (637)
129 cd01518 RHOD_YceA Member of th 28.2 1.1E+02 0.0023 23.6 4.3 14 86-99 60-73 (101)
130 PF10727 Rossmann-like: Rossma 27.9 57 0.0012 27.2 2.8 26 265-290 80-109 (127)
131 PRK15378 inositol phosphate ph 27.1 59 0.0013 33.5 3.2 21 277-297 456-476 (564)
132 PHA02746 protein tyrosine phos 27.0 2.2E+02 0.0047 27.5 7.0 56 53-113 206-270 (323)
133 cd01527 RHOD_YgaP Member of th 27.0 95 0.0021 23.6 3.8 29 275-306 52-80 (99)
134 PHA02742 protein tyrosine phos 26.7 2.1E+02 0.0045 27.3 6.8 57 53-114 187-253 (303)
135 smart00400 ZnF_CHCC zinc finge 26.4 82 0.0018 22.0 3.0 32 281-314 23-54 (55)
136 TIGR00715 precor6x_red precorr 26.2 2.6E+02 0.0056 26.2 7.2 54 195-257 175-233 (256)
137 KOG0348|consensus 26.1 85 0.0019 33.0 4.1 30 175-205 225-254 (708)
138 PHA03338 US22 family homolog; 26.0 59 0.0013 31.3 2.7 69 246-316 126-196 (344)
139 PF00580 UvrD-helicase: UvrD/R 24.9 79 0.0017 29.1 3.5 36 272-307 8-45 (315)
140 PRK08762 molybdopterin biosynt 24.8 1.8E+02 0.004 28.5 6.2 76 214-306 6-83 (376)
141 KOG0374|consensus 24.1 3.6E+02 0.0077 26.4 7.9 160 48-237 86-255 (331)
142 PRK12581 oxaloacetate decarbox 23.9 8.1E+02 0.017 25.2 11.0 18 113-130 64-81 (468)
143 PF03861 ANTAR: ANTAR domain; 23.9 92 0.002 21.9 2.9 23 295-317 18-40 (56)
144 TIGR02764 spore_ybaN_pdaB poly 23.9 2.5E+02 0.0053 24.4 6.3 56 217-295 111-168 (191)
145 PF02302 PTS_IIB: PTS system, 23.7 49 0.0011 25.0 1.5 20 279-299 1-20 (90)
146 PF07757 AdoMet_MTase: Predict 23.1 54 0.0012 27.0 1.7 43 95-147 29-71 (112)
147 COG1501 Alpha-glucosidases, fa 22.8 1.8E+02 0.0038 31.9 6.0 99 120-236 244-344 (772)
148 PF02673 BacA: Bacitracin resi 22.4 86 0.0019 29.5 3.2 27 285-313 159-185 (259)
149 COG1054 Predicted sulfurtransf 22.1 3.5E+02 0.0076 26.3 7.1 79 212-306 114-198 (308)
150 PF01807 zf-CHC2: CHC2 zinc fi 22.0 1.1E+02 0.0023 24.2 3.2 34 281-316 54-87 (97)
151 PRK12360 4-hydroxy-3-methylbut 21.9 3.5E+02 0.0076 25.8 7.2 69 213-287 42-126 (281)
152 COG0119 LeuA Isopropylmalate/h 20.9 5.8E+02 0.013 25.7 8.9 66 218-285 122-199 (409)
153 cd01530 Cdc25 Cdc25 phosphatas 20.9 1E+02 0.0022 25.0 3.0 25 275-301 66-91 (121)
154 PF08383 Maf_N: Maf N-terminal 20.8 81 0.0018 20.5 1.8 14 115-128 20-33 (35)
155 PRK07411 hypothetical protein; 20.3 1.1E+02 0.0024 30.4 3.6 83 213-306 284-368 (390)
156 PF00128 Alpha-amylase: Alpha 20.2 1.4E+02 0.0031 27.1 4.2 68 217-287 8-80 (316)
No 1
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=100.00 E-value=2.5e-62 Score=414.97 Aligned_cols=141 Identities=50% Similarity=0.906 Sum_probs=103.6
Q ss_pred ceeecCeEEEEEcccCCCCCCCCceEEEeeCCceeeccccCCCCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy3113 19 TEIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNP 98 (328)
Q Consensus 19 ~e~i~~rly~~~~~~~~~~~~~~~~~~f~~d~~~~y~~f~~dfgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~ 98 (328)
||||||||||++++.+| ++++++||||||++|+|+|||+|||||||+||||||++||++|++++.++|+||||||.|+
T Consensus 1 iE~i~drLyf~~~~~~p--~~~~~~~yF~iD~~l~Y~~F~~DFGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~ 78 (141)
T PF14671_consen 1 IEIIPDRLYFASLRNKP--KSTPNTHYFSIDDELVYENFYADFGPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDP 78 (141)
T ss_dssp ---SSSSEEEEE-SS------BTTEEEEE-TTTS----SSS------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-H
T ss_pred CCCCCCcEEEEEeCCCC--CCCCCcEEEEeCCeEEEecccCcCCCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCCh
Confidence 79999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCCCccccHHHHHHHHHHH
Q psy3113 99 KKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAFQDASDENSKYTLELLECFNAVFKA 162 (328)
Q Consensus 99 ~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~~~~~~~~pfrdas~~~~~~~lti~d~~~gl~ka 162 (328)
+||||||+|||||+||++||||||||+++.+. .|||+||||||+|+|+|+|||+||++|++||
T Consensus 79 ~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~-~p~~~pFRDAs~g~~~y~Lti~Dcl~Gl~kA 141 (141)
T PF14671_consen 79 KKRANAAFLIGAYAVIYLGMSPEEAYKPLASI-QPPFMPFRDASYGPCTYDLTILDCLRGLEKA 141 (141)
T ss_dssp HHHHHHHHHHHHHHHHTS---HHHHHHHHTTT-T-----B--SSSSS-S--B-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhc-CCCCCCCCCCCCCCcCceeEHHHHHHHHhhC
Confidence 99999999999999999999999999999987 6899999999999999999999999999998
No 2
>KOG1720|consensus
Probab=100.00 E-value=2.6e-52 Score=369.22 Aligned_cols=188 Identities=41% Similarity=0.791 Sum_probs=181.4
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHHHHhcccCCCCCCChHHHHHHHhhcCCCcceeecCcEEEeccCCC----CCCCCCC
Q psy3113 137 AFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVPNKLLAFSGPNT----TEQNTCY 212 (328)
Q Consensus 137 pfrdas~~~~~~~lti~d~~~gl~ka~~~g~~~~~~fd~~ey~~~e~~~~gd~nwIvP~~fla~~~P~~----~~~g~~~ 212 (328)
|||||||+.+.|.+|++||+.|+|||++.||+|+.+||+++|++||++|+||||||+|++|+++++|+. ++++++.
T Consensus 1 ~frdAsy~s~~~~it~~d~~~~~~r~~~~g~l~~~~~~~~~ye~ye~ve~gdfnwI~p~~~i~f~~p~~~s~gi~~~f~~ 80 (225)
T KOG1720|consen 1 PFRDASYGSSDFYITILDCLYGVWKALQSGWLDFSSFNVDEYEHYEAVENGDFNWIIPDRFIAFAGPHLKSRGIESGFPL 80 (225)
T ss_pred CCCCcccccccccceecchHHHHHHHHhccccchheecchhheeeeccCCCCcceeccchhhhhcCccccccchhhcccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999988 5688999
Q ss_pred CChHHhHHHHHhCCCcEEEEcCCCCCCccccccCCcEEEEeecCCCCCCChHHHHHHHHHHHcC--CCcEEEEcCCCCCh
Q psy3113 213 HPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY--KGPIAVHCKAGLGR 290 (328)
Q Consensus 213 ~~pe~~i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~~~~--~~~VlVHC~aGlGR 290 (328)
++|+.++.++++++|+++|+|++..||++.+++.||.|++++++|+++|+++++.+|+++++.. +|+|+|||+||+||
T Consensus 81 ~~~~~~~~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGR 160 (225)
T KOG1720|consen 81 HLPQPYIQYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGR 160 (225)
T ss_pred cCChhHHHHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999998864 59999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhhcccCCCCCCC
Q psy3113 291 TGCLIGAYMIKHVRRRRTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 291 TGtliaayLm~~~g~t~~eAi~~v~~r~~r~RPGsIeT 328 (328)
|||++|||||+.+|||+.|||++++ .+|||+|+|
T Consensus 161 TG~liAc~lmy~~g~ta~eaI~~lR----~~RpG~V~g 194 (225)
T KOG1720|consen 161 TGTLIACYLMYEYGMTAGEAIAWLR----ICRPGAVIG 194 (225)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHH----hcCCccccC
Confidence 9999999999999999999999994 458999986
No 3
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.94 E-value=1.4e-26 Score=211.52 Aligned_cols=139 Identities=25% Similarity=0.454 Sum_probs=124.4
Q ss_pred CCCChHHHHHHHhhcCCCcceeecCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCCCCccccccCCcEE
Q psy3113 171 DDFDVDEMEKYERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDH 250 (328)
Q Consensus 171 ~~fd~~ey~~~e~~~~gd~nwIvP~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI~~ 250 (328)
.++-.++|.+++++|++++ +||++..|... +...+++.|+++||+.||+++++.|+.+.++..||++
T Consensus 74 ~~~~~~~~~~~~~ie~~~~------rfLi~~~P~~~-------~~~~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~ 140 (241)
T PTZ00393 74 MDYLNPVLNHPTKIEHGKI------KILILDAPTND-------LLPLYIKEMKNYNVTDLVRTCERTYNDGEITSAGINV 140 (241)
T ss_pred ccccchhcccchhhccCce------eEEEeCCCCHH-------HHHHHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeE
Confidence 3456799999999999987 78999999872 2346899999999999999999999999999999999
Q ss_pred EEeecCCCCCCChHHHHHHHHHHHc---CCCcEEEEcCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHhhhcccCCCCCC
Q psy3113 251 VDFYFPDGTAPPNDILCEFIKVCEK---YKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLRWVPGPLE 327 (328)
Q Consensus 251 ~~l~~~D~~~P~~~~i~~fi~~~~~---~~~~VlVHC~aGlGRTGtliaayLm~~~g~t~~eAi~~v~~r~~r~RPGsIe 327 (328)
+++||+|+++|+.+++.+|++.++. .+++|+|||+||+||||+++|+|||. .|++++||+++++.. |||+|.
T Consensus 141 ~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~----RPgAIn 215 (241)
T PTZ00393 141 HELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDR----RKGAIN 215 (241)
T ss_pred EEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHH----CCCCCC
Confidence 9999999999999988888887763 68899999999999999999999998 899999999999655 899874
No 4
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.92 E-value=3.8e-24 Score=187.66 Aligned_cols=129 Identities=22% Similarity=0.422 Sum_probs=112.6
Q ss_pred CCCcceeecCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCCCCccccccCCcEEEEeecCCCCCCChHH
Q psy3113 186 FGDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDI 265 (328)
Q Consensus 186 ~gd~nwIvP~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI~~~~l~~~D~~~P~~~~ 265 (328)
...++|+.+ +|++++.|.+. +-+.+++.|++.||++||+++++.|+.+.++..||+++++|++|+.+|+.+.
T Consensus 8 ~~~~~~~~~-r~~~~~~P~~~-------~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~ 79 (166)
T PTZ00242 8 DRQIEYVLF-KFLILDAPSPS-------NLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAV 79 (166)
T ss_pred Ccceeeece-EEEEecCCCcc-------cHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHH
Confidence 345789866 59999999882 3456789999999999999999989988899999999999999999999987
Q ss_pred HHHHHHHHHc-------CCCcEEEEcCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHhhhcccCCCCC
Q psy3113 266 LCEFIKVCEK-------YKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLRWVPGPL 326 (328)
Q Consensus 266 i~~fi~~~~~-------~~~~VlVHC~aGlGRTGtliaayLm~~~g~t~~eAi~~v~~r~~r~RPGsI 326 (328)
+.+|++.+++ .+++|+|||.||+|||||++++|||++.+++++||+..++.+ |||++
T Consensus 80 i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~----R~~~i 143 (166)
T PTZ00242 80 IDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREK----RKGAI 143 (166)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHH----CCCCc
Confidence 7777665542 489999999999999999999999998889999999999655 78876
No 5
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.82 E-value=2.6e-19 Score=150.98 Aligned_cols=113 Identities=24% Similarity=0.301 Sum_probs=91.4
Q ss_pred ceeecCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCCCCccccccCCcEEEEeecCCCCCCC-h---HH
Q psy3113 190 SWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPP-N---DI 265 (328)
Q Consensus 190 nwIvP~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI~~~~l~~~D~~~P~-~---~~ 265 (328)
+.|.|+.++|. .|.. .+++.++++||++||||+.+.... ...|++++++|+.|...++ . +.
T Consensus 2 ~~I~~~l~~G~-~~~~-----------~~~~~l~~~gi~~Vi~l~~~~~~~---~~~~~~~~~ipi~D~~~~~~~~~~~~ 66 (138)
T smart00195 2 SEILPHLYLGS-YSSA-----------LNLALLKKLGITHVINVTNEVPNL---NKKGFTYLGVPILDNTETKISPYFPE 66 (138)
T ss_pred cEEeCCeEECC-hhHc-----------CCHHHHHHcCCCEEEEccCCCCCC---CCCCCEEEEEECCCCCCCChHHHHHH
Confidence 46788877653 3433 147899999999999999865432 3578999999999954433 2 35
Q ss_pred HHHHHHHHHcCCCcEEEEcCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy3113 266 LCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYH 317 (328)
Q Consensus 266 i~~fi~~~~~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t~~eAi~~v~~r 317 (328)
+.+|++.+.+.+++|+|||.+|+||||+++++|||...|+++++|+..++.+
T Consensus 67 ~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~ 118 (138)
T smart00195 67 AVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDR 118 (138)
T ss_pred HHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6677777778899999999999999999999999999999999999999766
No 6
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.80 E-value=9.1e-19 Score=147.04 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=93.8
Q ss_pred cceeecCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCCCCccccccCCcEEEEeecCCCCCCChH----
Q psy3113 189 ISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPND---- 264 (328)
Q Consensus 189 ~nwIvP~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI~~~~l~~~D~~~P~~~---- 264 (328)
+++|.|+.++| ..|.. .+.+.|+++||++||||+...+. ......|+.+.++|+.|...+...
T Consensus 2 ~~~i~~~l~~g-~~~~~-----------~d~~~L~~~gi~~VI~l~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 68 (139)
T cd00127 2 LSEITPGLYLG-SYPAA-----------SDKELLKKLGITHVLNVAKEVPN-ENLFLSDFNYLYVPILDLPSQDISKYFD 68 (139)
T ss_pred cCEEcCCeEEC-ChhHh-----------cCHHHHHHcCCCEEEEcccCCCC-cccCCCCceEEEEEceeCCCCChHHHHH
Confidence 57888887765 22322 15889999999999999987654 344578999999999988755432
Q ss_pred HHHHHHHHHHcCCCcEEEEcCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy3113 265 ILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYH 317 (328)
Q Consensus 265 ~i~~fi~~~~~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t~~eAi~~v~~r 317 (328)
.+.+|++...+.+++|+|||.+|+||||+++++|+|...++++++|++.++..
T Consensus 69 ~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~ 121 (139)
T cd00127 69 EAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSR 121 (139)
T ss_pred HHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35566666666789999999999999999999999999999999999999765
No 7
>KOG2836|consensus
Probab=99.76 E-value=7e-18 Score=140.60 Aligned_cols=103 Identities=26% Similarity=0.493 Sum_probs=95.0
Q ss_pred ChHHhHHHHHhCCCcEEEEcCCCCCCccccccCCcEEEEeecCCCCCCChHHHHHHHHHH-----HcCCCcEEEEcCCCC
Q psy3113 214 PPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVC-----EKYKGPIAVHCKAGL 288 (328)
Q Consensus 214 ~pe~~i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~-----~~~~~~VlVHC~aGl 288 (328)
+...+++.|+++|+++||++++..||...+++.||++.+++|.|+..|+...+..+++.+ +.++..|+|||.||+
T Consensus 29 Tln~fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvagl 108 (173)
T KOG2836|consen 29 TLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGL 108 (173)
T ss_pred hHHHHHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeeccc
Confidence 567799999999999999999999999999999999999999999999998888887765 457899999999999
Q ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy3113 289 GRTGCLIGAYMIKHVRRRRTVLTKRNQYH 317 (328)
Q Consensus 289 GRTGtliaayLm~~~g~t~~eAi~~v~~r 317 (328)
||+.+++|+-||. .||.-++|+++++.+
T Consensus 109 grapvlvalalie-~gmkyedave~ir~k 136 (173)
T KOG2836|consen 109 GRAPVLVALALIE-AGMKYEDAVEMIRQK 136 (173)
T ss_pred CcchHHHHHHHHH-ccccHHHHHHHHHHH
Confidence 9999999999998 899999999999644
No 8
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.73 E-value=1.8e-17 Score=138.61 Aligned_cols=99 Identities=22% Similarity=0.377 Sum_probs=83.3
Q ss_pred HHHHHhCCCcEEEEcCCCCCCccccccCCcEEEEeecCC-CCCCChH---HHHHHHHHHHcCCCcEEEEcCCCCChHHHH
Q psy3113 219 LDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPD-GTAPPND---ILCEFIKVCEKYKGPIAVHCKAGLGRTGCL 294 (328)
Q Consensus 219 i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI~~~~l~~~D-~~~P~~~---~i~~fi~~~~~~~~~VlVHC~aGlGRTGtl 294 (328)
...+++.||++|||++.+..........++.++.+|+.| ...|... .+.+|++...+.+++|+|||.+|+||||++
T Consensus 11 ~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 90 (133)
T PF00782_consen 11 IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAV 90 (133)
T ss_dssp HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHH
T ss_pred HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHH
Confidence 788999999999999987655444567789999999998 3443333 455666666678999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhh
Q psy3113 295 IGAYMIKHVRRRRTVLTKRNQYH 317 (328)
Q Consensus 295 iaayLm~~~g~t~~eAi~~v~~r 317 (328)
+++|||...+++.++|++.++.+
T Consensus 91 ~~ayLm~~~~~~~~~A~~~v~~~ 113 (133)
T PF00782_consen 91 AAAYLMKKNGMSLEEAIEYVRSR 113 (133)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999766
No 9
>KOG1718|consensus
Probab=99.69 E-value=2.5e-16 Score=136.01 Aligned_cols=126 Identities=17% Similarity=0.181 Sum_probs=103.0
Q ss_pred cCCCcceeecCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCCCCccccccCCcEEEEeecCCCCCCC--
Q psy3113 185 QFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPP-- 262 (328)
Q Consensus 185 ~~gd~nwIvP~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI~~~~l~~~D~~~P~-- 262 (328)
+.+-++.|+|+.||. .|-.. .+-.+++++||+.|||.+.+..+. .-.++++..++..|.+-..
T Consensus 13 ~~~~~SqIt~sLfl~-~GvaA-----------~~k~~l~~~~It~IiNat~E~pn~---~l~~~qy~kv~~~D~p~~~l~ 77 (198)
T KOG1718|consen 13 SIGGMSQITPSLFLS-NGVAA-----------NDKLLLKKRKITCIINATTEVPNT---SLPDIQYMKVPLEDTPQARLY 77 (198)
T ss_pred CccchhhcCcceeEe-ccccc-----------cCHHHHHhcCceEEEEcccCCCCc---cCCCceeEEEEcccCCcchhh
Confidence 457789999999987 22222 146789999999999999876552 3468899999998876543
Q ss_pred --hHHHHHHHHHHHcCCCcEEEEcCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHhhhcccCCCC
Q psy3113 263 --NDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLRWVPGP 325 (328)
Q Consensus 263 --~~~i~~fi~~~~~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t~~eAi~~v~~r~~r~RPGs 325 (328)
.+.+.+-|..+...+|.++|||.||++||+++|.+|||++.+++..||..+++.++.-+||+.
T Consensus 78 ~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~ 142 (198)
T KOG1718|consen 78 DHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNV 142 (198)
T ss_pred hhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCc
Confidence 345666677777889999999999999999999999999999999999999998867778874
No 10
>PRK12361 hypothetical protein; Provisional
Probab=99.65 E-value=1.5e-15 Score=155.84 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=96.3
Q ss_pred CcceeecCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCCCCc-cccccCCcEEEEeecCCCCCCChHHH
Q psy3113 188 DISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDE-RKFTEAGLDHVDFYFPDGTAPPNDIL 266 (328)
Q Consensus 188 d~nwIvP~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~yd~-~~~~~~gI~~~~l~~~D~~~P~~~~i 266 (328)
.++.|.|+.|+|.. |.. .+.+.|+++||++||||+.+.... ......+++|+++|+.|...|+.+.+
T Consensus 94 ~~~~I~~~l~lG~~-~~a-----------~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~~~l 161 (547)
T PRK12361 94 AIQKIDENLYLGCR-LFP-----------ADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLAQL 161 (547)
T ss_pred cceEEcCcEEECCC-CCc-----------ccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcHHHH
Confidence 46889999888743 322 258889999999999999654321 12234689999999999999987665
Q ss_pred HHH---HHHHHcCCCcEEEEcCCCCChHHHHHHHHHHHH-cCCCHHHHHHHHHhhhcccCCC
Q psy3113 267 CEF---IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH-VRRRRTVLTKRNQYHQLRWVPG 324 (328)
Q Consensus 267 ~~f---i~~~~~~~~~VlVHC~aGlGRTGtliaayLm~~-~g~t~~eAi~~v~~r~~r~RPG 324 (328)
.+. ++...+.+++|+|||++|.|||+++++||||.+ .+++++||++.++.++...+|+
T Consensus 162 ~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n 223 (547)
T PRK12361 162 NQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLN 223 (547)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCC
Confidence 554 444455789999999999999999999999976 5899999999998763334443
No 11
>KOG1719|consensus
Probab=99.64 E-value=3.4e-16 Score=133.42 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=87.9
Q ss_pred hHHHHHhCCCcEEEEcCCCCC---CccccccCCcEEEEeecCC-CCCCChHHHHHHHHHHHc---CCCcEEEEcCCCCCh
Q psy3113 218 YLDYFLQNGVQLVVRLNQKNY---DERKFTEAGLDHVDFYFPD-GTAPPNDILCEFIKVCEK---YKGPIAVHCKAGLGR 290 (328)
Q Consensus 218 ~i~~lk~~gI~~VV~L~~~~y---d~~~~~~~gI~~~~l~~~D-~~~P~~~~i~~fi~~~~~---~~~~VlVHC~aGlGR 290 (328)
+.+.+++.|+..||.++++.- ....++..||+++.+|..| ...|+.+.+.+.++.+.+ .++.|+|||+||.||
T Consensus 43 ~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtR 122 (183)
T KOG1719|consen 43 DVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTR 122 (183)
T ss_pred cchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCcc
Confidence 467899999999999998641 2235688999999999988 467888877776666554 688999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhh--hcccCCCC
Q psy3113 291 TGCLIGAYMIKHVRRRRTVLTKRNQYH--QLRWVPGP 325 (328)
Q Consensus 291 TGtliaayLm~~~g~t~~eAi~~v~~r--~~r~RPGs 325 (328)
|.|+++||||++.+|++++|.+.+++. +.-+||+.
T Consensus 123 SaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Q 159 (183)
T KOG1719|consen 123 SATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQ 159 (183)
T ss_pred chhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHH
Confidence 999999999999999999999999733 23345543
No 12
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.63 E-value=1.6e-15 Score=131.81 Aligned_cols=125 Identities=20% Similarity=0.281 Sum_probs=74.1
Q ss_pred CCCcceeecC-----cEEEecc-CCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCC----CC----ccccccCCcEEE
Q psy3113 186 FGDISWIVPN-----KLLAFSG-PNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKN----YD----ERKFTEAGLDHV 251 (328)
Q Consensus 186 ~gd~nwIvP~-----~fla~~~-P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~----yd----~~~~~~~gI~~~ 251 (328)
.-.++|+-++ .+|++.. |..-.+.. ++.-+.+++.++.+|++.||.|.+.. |. .+..+..|+.++
T Consensus 26 P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~-~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~ 104 (168)
T PF05706_consen 26 PIQIDWLPLSPVNCSGFLGLTFLPGCKFKDW-RRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWH 104 (168)
T ss_dssp ----EEEE-GGGT-SSEEEEES-TT-EETTE-EB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEE
T ss_pred ceeeeeecccccCCcceeeeecCCCcccccc-cchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEE
Confidence 4557888664 3566554 54311222 34567789999999999999998642 22 234578899999
Q ss_pred EeecCCCCCCChHHHHHHHHHH---HcCCCcEEEEcCCCCChHHHHHHHHHHHH-cCCCHHHHH
Q psy3113 252 DFYFPDGTAPPNDILCEFIKVC---EKYKGPIAVHCKAGLGRTGCLIGAYMIKH-VRRRRTVLT 311 (328)
Q Consensus 252 ~l~~~D~~~P~~~~i~~fi~~~---~~~~~~VlVHC~aGlGRTGtliaayLm~~-~g~t~~eAi 311 (328)
++|++|+++|+.+...+++..+ .+.++.|+|||++|+||||+++||+|+.. -.+++++||
T Consensus 105 h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 105 HLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp E----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred ecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 9999999999876555555444 34689999999999999999999999874 358999987
No 13
>KOG1717|consensus
Probab=99.63 E-value=1.5e-15 Score=139.42 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=90.1
Q ss_pred hHHHHHhCCCcEEEEcCCCCCCccccccC-CcEEEEeecCCCCCCCh----HHHHHHHHHHHcCCCcEEEEcCCCCChHH
Q psy3113 218 YLDYFLQNGVQLVVRLNQKNYDERKFTEA-GLDHVDFYFPDGTAPPN----DILCEFIKVCEKYKGPIAVHCKAGLGRTG 292 (328)
Q Consensus 218 ~i~~lk~~gI~~VV~L~~~~yd~~~~~~~-gI~~~~l~~~D~~~P~~----~~i~~fi~~~~~~~~~VlVHC~aGlGRTG 292 (328)
..+.|+++||++|+|++.... ..|+.. .+.|..+|+.|+..... +....||+..+..+..|+|||-||++||.
T Consensus 189 NldvLkk~gI~yviNVTpnlp--n~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSv 266 (343)
T KOG1717|consen 189 NLDVLKKYGIKYVINVTPNLP--NNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSV 266 (343)
T ss_pred cHHHHHhcCceEEEecCCCCc--chhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchh
Confidence 588999999999999997652 334444 47899999999877664 35778888888899999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhhhcccCCC
Q psy3113 293 CLIGAYMIKHVRRRRTVLTKRNQYHQLRWVPG 324 (328)
Q Consensus 293 tliaayLm~~~g~t~~eAi~~v~~r~~r~RPG 324 (328)
|++++|||+....+..+|.++|++|...+-|+
T Consensus 267 TvtvaYLMqkl~lslndAyd~Vk~kksnisPN 298 (343)
T KOG1717|consen 267 TVTVAYLMQKLNLSLNDAYDFVKHKKSNISPN 298 (343)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHhccCCCCC
Confidence 99999999999999999999999887777775
No 14
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.59 E-value=7.2e-15 Score=130.44 Aligned_cols=87 Identities=23% Similarity=0.377 Sum_probs=69.8
Q ss_pred CCccccccCCcEEEEeecCCCCCCChHHHHHHHHHH---HcCCCcEEEEcCCCCChHHHHHHHHHHHH-cCCCHHHHHHH
Q psy3113 238 YDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVC---EKYKGPIAVHCKAGLGRTGCLIGAYMIKH-VRRRRTVLTKR 313 (328)
Q Consensus 238 yd~~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~---~~~~~~VlVHC~aGlGRTGtliaayLm~~-~g~t~~eAi~~ 313 (328)
+.....+..|+.+.++|++|+..|+...+.++++.+ .+.+++|+|||.+|+|||||++|||||.. ..+++++++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~ 142 (180)
T COG2453 63 YNVAIEENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAV 142 (180)
T ss_pred eecceeccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 444555778999999999999999987666655554 45677999999999999999999999998 56678888888
Q ss_pred HHhhhcccCCCCCCC
Q psy3113 314 NQYHQLRWVPGPLET 328 (328)
Q Consensus 314 v~~r~~r~RPGsIeT 328 (328)
++++ |||.++|
T Consensus 143 ~~~~----r~~~v~~ 153 (180)
T COG2453 143 KRRR----RPGAVVT 153 (180)
T ss_pred HHhc----CCccccc
Confidence 8665 6666553
No 15
>KOG1716|consensus
Probab=99.57 E-value=2.7e-14 Score=135.50 Aligned_cols=126 Identities=21% Similarity=0.268 Sum_probs=101.2
Q ss_pred CCcceeecCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCCCCccccccCCcEEEEeecCCCCCCCh---
Q psy3113 187 GDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPN--- 263 (328)
Q Consensus 187 gd~nwIvP~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI~~~~l~~~D~~~P~~--- 263 (328)
.+++.|.|+.++|...-. ...+.+++.||++|+|+.............+++|..++..|....+.
T Consensus 73 ~~~~~i~p~l~lg~~~~~------------~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~ 140 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVA------------SDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQH 140 (285)
T ss_pred CCceeecCCceecCcccc------------cchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHH
Confidence 567889999887644411 25778899999999999976544322223489999999989666653
Q ss_pred -HHHHHHHHHHHcCCCcEEEEcCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHhhhcccCCC
Q psy3113 264 -DILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLRWVPG 324 (328)
Q Consensus 264 -~~i~~fi~~~~~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t~~eAi~~v~~r~~r~RPG 324 (328)
+....||+.+...++.|+|||.+|++||.|++.||||+..+++.++|+.+|+.++..+.|+
T Consensus 141 ~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN 202 (285)
T KOG1716|consen 141 FPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPN 202 (285)
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCC
Confidence 3577889999999999999999999999999999999999999999999999874444453
No 16
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.52 E-value=7.6e-14 Score=122.26 Aligned_cols=119 Identities=13% Similarity=0.275 Sum_probs=75.7
Q ss_pred cCCCcceeecCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCCCCcc---ccccCCcEEEEeecCCCCC-
Q psy3113 185 QFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDER---KFTEAGLDHVDFYFPDGTA- 260 (328)
Q Consensus 185 ~~gd~nwIvP~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~yd~~---~~~~~gI~~~~l~~~D~~~- 260 (328)
..-||.-|.|+.+ +|.++ ++ ..+++|+++|++|||+|+.+.+..+ .++..||++++++......
T Consensus 3 pP~nF~~V~~~vY---RS~~P--------~~-~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~ 70 (164)
T PF03162_consen 3 PPLNFGMVEPGVY---RSAQP--------TP-ANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDP 70 (164)
T ss_dssp --TT-EEEETTEE---EESS----------H-HHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GG
T ss_pred CCccccCCCCCcc---CCCCC--------Ch-hhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCc
Confidence 3567888888744 33222 23 3689999999999999998754332 3478999999999876554
Q ss_pred ---CChHHHHHHHHHH-HcCCCcEEEEcCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHh
Q psy3113 261 ---PPNDILCEFIKVC-EKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQY 316 (328)
Q Consensus 261 ---P~~~~i~~fi~~~-~~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t~~eAi~~v~~ 316 (328)
.+.+.+.+.++.+ +..+.||+|||+.|.+|||+++|||- +..||+.+.++++.++
T Consensus 71 ~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 71 WVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRR 129 (164)
T ss_dssp G----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHH
Confidence 4566788888765 45689999999999999999999999 6689999999998764
No 17
>KOG2283|consensus
Probab=99.50 E-value=7.5e-14 Score=138.68 Aligned_cols=133 Identities=28% Similarity=0.411 Sum_probs=108.3
Q ss_pred CCCcceeecCcEEEeccCCCCCCCCCCCChHHhHHHHHhC--CCcEEEEcC-CCCCCccccccCCcEEEEeecCCCCCCC
Q psy3113 186 FGDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQN--GVQLVVRLN-QKNYDERKFTEAGLDHVDFYFPDGTAPP 262 (328)
Q Consensus 186 ~gd~nwIvP~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~--gI~~VV~L~-~~~yd~~~~~~~gI~~~~l~~~D~~~P~ 262 (328)
..|+++|.. ++||++.|+.....+.++..++.+.+|... |--.|.||+ ++.|+...|.. ++..++|+|+.+|+
T Consensus 12 DLDltYIT~-rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g---~V~~~~~~Dh~~P~ 87 (434)
T KOG2283|consen 12 DLDLTYITS-RIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHG---RVARFGFDDHNPPP 87 (434)
T ss_pred cccceeeee-eEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCcccccc---ceeecCCCCCCCCc
Confidence 468899965 599999999943335566778888888864 555899999 88899998865 45669999999999
Q ss_pred hHHHHHHHHHHHc-----CCCcEEEEcCCCCChHHHHHHHHHHHHcCC-CHHHHHHHHHhhhcccCCC
Q psy3113 263 NDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMIKHVRR-RRTVLTKRNQYHQLRWVPG 324 (328)
Q Consensus 263 ~~~i~~fi~~~~~-----~~~~VlVHC~aGlGRTGtliaayLm~~~g~-t~~eAi~~v~~r~~r~RPG 324 (328)
.+.+..|++.+.+ +...|+|||++|+||||++++||||....+ ++++|+.+...+ |+-++
T Consensus 88 L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~k--R~~~~ 153 (434)
T KOG2283|consen 88 LELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEK--RFDEG 153 (434)
T ss_pred HHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhh--hcccc
Confidence 9999999887653 689999999999999999999999986555 499999998655 34444
No 18
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.46 E-value=2.8e-13 Score=129.32 Aligned_cols=129 Identities=13% Similarity=0.212 Sum_probs=89.1
Q ss_pred ccee----ecCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCC-------CCCccc----c----------
Q psy3113 189 ISWI----VPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQK-------NYDERK----F---------- 243 (328)
Q Consensus 189 ~nwI----vP~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~-------~yd~~~----~---------- 243 (328)
.||| .+++||+..+|.. .|.++++.+.-+.++..||-|+.. .|.+.. .
T Consensus 81 AnyVdG~~~~~~fIaTQ~Pl~-------~T~~dFW~MVwe~~~~iIVMLt~~~e~kc~~~YWP~~~~~~~~~g~f~V~~~ 153 (298)
T PHA02740 81 ARFVDGYDFEQKFICIINLCE-------DACDKFLQALSDNKVQIIVLISRHADKKCFNQFWSLKEGCVITSDKFQIETL 153 (298)
T ss_pred EEEecCCCCCCcEEEecCCch-------hhHHHHHHHHHhcCCCEEEEccccccccccccCCCCCCCCeEEECCEEEEEE
Confidence 4555 3578999999976 367889999999999999999841 232210 0
Q ss_pred --------------------ccCCcEEEE-eecCCCCCCC-hHHHHHHHHHHHc------------CCCcEEEEcCCCCC
Q psy3113 244 --------------------TEAGLDHVD-FYFPDGTAPP-NDILCEFIKVCEK------------YKGPIAVHCKAGLG 289 (328)
Q Consensus 244 --------------------~~~gI~~~~-l~~~D~~~P~-~~~i~~fi~~~~~------------~~~~VlVHC~aGlG 289 (328)
+.+-|.|.+ ..|||+++|. ...+.+|+..+++ ..+||+|||+||+|
T Consensus 154 ~~~~~~~~~~~~l~l~~~~~~~r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvG 233 (298)
T PHA02740 154 EIIIKPHFNLTLLSLTDKFGQAQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGIS 233 (298)
T ss_pred EEEecCCEEEEEEEEEcCCCCcEEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCc
Confidence 011233433 4799999996 4467777655431 35799999999999
Q ss_pred hHHHHHHHHH-HHHcC----CCHHHHHHHHHhhhcccCCCCCCC
Q psy3113 290 RTGCLIGAYM-IKHVR----RRRTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 290 RTGtliaayL-m~~~g----~t~~eAi~~v~~r~~r~RPGsIeT 328 (328)
||||+||+.. +.+.. .+..+++..+ |++|+|+|||
T Consensus 234 RTGtFcaiDi~l~~~~~~~~vdi~~~V~~l----R~qR~~~Vqt 273 (298)
T PHA02740 234 SSAVFCVFDICATEFDKTGMLSIANALKKV----RQKKYGCMNC 273 (298)
T ss_pred hhHHHHHHHHHHHHHHhcCcccHHHHHHHH----HhhCccccCC
Confidence 9999999977 33322 2344444444 4779999997
No 19
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.43 E-value=5.9e-13 Score=127.38 Aligned_cols=124 Identities=19% Similarity=0.360 Sum_probs=87.4
Q ss_pred cCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCC---------CCCccc----------------------
Q psy3113 194 PNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQK---------NYDERK---------------------- 242 (328)
Q Consensus 194 P~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~---------~yd~~~---------------------- 242 (328)
+.+||+..+|.. .|..+++.+.-+.++..||.|+.. .|.+..
T Consensus 92 ~~~fIatQ~Pl~-------~T~~dFW~MVw~~~~~vIVmLt~~~E~g~~kc~~YWp~~~~~~~~~g~~~V~~~~~~~~~~ 164 (303)
T PHA02742 92 KGRFICTQAPLE-------ETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYWMPHERGKATHGEFKIKTKKIKSFRN 164 (303)
T ss_pred CCeEEEECCCCc-------ccHHHHHHHHhhcCCCeEEEcchhhhCCeeeccccCCCCCCCceEEEEEEEEEEEEEEcCC
Confidence 358999999977 367889999999999999999841 132100
Q ss_pred c-------cc--CC----cEEEE-eecCCCCCCCh-HHHHHHHHHHHc---------------CCCcEEEEcCCCCChHH
Q psy3113 243 F-------TE--AG----LDHVD-FYFPDGTAPPN-DILCEFIKVCEK---------------YKGPIAVHCKAGLGRTG 292 (328)
Q Consensus 243 ~-------~~--~g----I~~~~-l~~~D~~~P~~-~~i~~fi~~~~~---------------~~~~VlVHC~aGlGRTG 292 (328)
+ +. .| |.|.+ ..|||+++|.. ..+.+|+..+++ ..+||+|||++|+||||
T Consensus 165 ~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTG 244 (303)
T PHA02742 165 YAVTNLCLTDTNTGASLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAG 244 (303)
T ss_pred EEEEEEEEEECCCCceEEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhH
Confidence 0 00 11 44444 36999999974 477788776643 14799999999999999
Q ss_pred HHHHHHH-HHHcC----CCHHHHHHHHHhhhcccCCCCCCC
Q psy3113 293 CLIGAYM-IKHVR----RRRTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 293 tliaayL-m~~~g----~t~~eAi~~v~~r~~r~RPGsIeT 328 (328)
|+||+.. |.... .+..+++..+ |++|||+|||
T Consensus 245 tF~aid~~i~~~~~~~~v~v~~~V~~l----R~qR~~~Vqt 281 (303)
T PHA02742 245 AFCAIDICISKYNERAIIPLLSIVRDL----RKQRHNCLSL 281 (303)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHH----HhhcccccCC
Confidence 9999976 33332 2334444444 4779999997
No 20
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.42 E-value=1.7e-12 Score=118.72 Aligned_cols=124 Identities=27% Similarity=0.458 Sum_probs=93.6
Q ss_pred cCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCC---------CCccc---------------------c
Q psy3113 194 PNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKN---------YDERK---------------------F 243 (328)
Q Consensus 194 P~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~---------yd~~~---------------------~ 243 (328)
+.+||+..+|.. .+.++++.++.+.+++.||.|++.. |.+.. +
T Consensus 40 ~~~fI~tQ~P~~-------~t~~~FW~mv~~~~~~~IV~l~~~~e~~~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~~~~~ 112 (231)
T cd00047 40 PKAYIATQGPLP-------NTVEDFWRMVWEQKVPVIVMLTELVEKGREKCAQYWPEEEGSLTYGDITVTLVSEEKLDDY 112 (231)
T ss_pred CcceEEcCCCCh-------hhHHHHHHHHHhcCCCEEEEccccccCCCccCccCCCCCCCCeEecCEEEEEEEEEEcCCE
Confidence 457899999977 2678899999999999999997421 21111 0
Q ss_pred -------------ccCCcEEEEe-ecCCCCCCCh-HHHHHHHHHHHcC-----CCcEEEEcCCCCChHHHHHHHHHHHHc
Q psy3113 244 -------------TEAGLDHVDF-YFPDGTAPPN-DILCEFIKVCEKY-----KGPIAVHCKAGLGRTGCLIGAYMIKHV 303 (328)
Q Consensus 244 -------------~~~gI~~~~l-~~~D~~~P~~-~~i~~fi~~~~~~-----~~~VlVHC~aGlGRTGtliaayLm~~~ 303 (328)
....|.|+++ .|+|...|+. ..+.+|++.++.. ++||+|||.+|+||||++||++++...
T Consensus 113 ~~~~l~i~~~~~~~~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~ 192 (231)
T cd00047 113 TVRTLKLSNTGTGETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQR 192 (231)
T ss_pred EEEEEEEEECCCCCceEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHH
Confidence 1122455554 4999999876 6788888877654 789999999999999999999875432
Q ss_pred -----CCCHHHHHHHHHhhhcccCCCCCCC
Q psy3113 304 -----RRRRTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 304 -----g~t~~eAi~~v~~r~~r~RPGsIeT 328 (328)
.++..+++..++ .+|||+|+|
T Consensus 193 ~~~~~~~~~~~~v~~iR----~~R~~~v~~ 218 (231)
T cd00047 193 LEAEGVVDIFQTVKELR----SQRPGMVQT 218 (231)
T ss_pred HHhcCCCCHHHHHHHHH----hccccccCC
Confidence 578899999883 558999986
No 21
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.41 E-value=2.4e-12 Score=119.72 Aligned_cols=123 Identities=25% Similarity=0.434 Sum_probs=92.3
Q ss_pred CcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCC---------CCCccc---------------------c-
Q psy3113 195 NKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQK---------NYDERK---------------------F- 243 (328)
Q Consensus 195 ~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~---------~yd~~~---------------------~- 243 (328)
.+||+..+|.. .+.++++.++.+.+++.||.|++. .|.+.. +
T Consensus 69 ~~fI~tQ~P~~-------~t~~dFW~mv~~~~~~~IVmL~~~~e~~~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~~~~~~ 141 (258)
T smart00194 69 KAYIATQGPLP-------STVEDFWRMVWEEKVTTIVMLTELEEKGREKCAQYWPEEEEPLTYGDITVTLKSVEKVDDYT 141 (258)
T ss_pred cceEEeCCCch-------HHHHHHHHHHHhcCCCEEEEeccceeCCEeeccccCCCCCCcceECCEEEEEEEEEecCCEE
Confidence 57999999976 367889999999999999999852 121110 0
Q ss_pred ------cc------CCcEEEE-eecCCCCCCC-hHHHHHHHHHHHcC----CCcEEEEcCCCCChHHHHHHHHHHHH---
Q psy3113 244 ------TE------AGLDHVD-FYFPDGTAPP-NDILCEFIKVCEKY----KGPIAVHCKAGLGRTGCLIGAYMIKH--- 302 (328)
Q Consensus 244 ------~~------~gI~~~~-l~~~D~~~P~-~~~i~~fi~~~~~~----~~~VlVHC~aGlGRTGtliaayLm~~--- 302 (328)
+. .-+.|++ ..|+|.+.|+ ...+.+|++.++.. ++||+|||.+|+||||++||++++..
T Consensus 142 ~~~l~v~~~~~~~~~~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~ 221 (258)
T smart00194 142 IRTLEVTNTGCSETRTVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLE 221 (258)
T ss_pred EEEEEEEECCCCCcEEEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHH
Confidence 01 1144444 3699999994 56788888887753 78999999999999999999987532
Q ss_pred --cCCCHHHHHHHHHhhhcccCCCCCCC
Q psy3113 303 --VRRRRTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 303 --~g~t~~eAi~~v~~r~~r~RPGsIeT 328 (328)
...+..+++..++ ++|||+|+|
T Consensus 222 ~~~~v~v~~~v~~lR----~~R~~~v~~ 245 (258)
T smart00194 222 AGKEVDIFEIVKELR----SQRPGMVQT 245 (258)
T ss_pred HcCCCCHHHHHHHHH----hccccccCC
Confidence 3567888888883 569999986
No 22
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.40 E-value=1e-12 Score=126.85 Aligned_cols=129 Identities=21% Similarity=0.341 Sum_probs=90.3
Q ss_pred cceee----cCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCC--------CCCccc--------------
Q psy3113 189 ISWIV----PNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQK--------NYDERK-------------- 242 (328)
Q Consensus 189 ~nwIv----P~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~--------~yd~~~-------------- 242 (328)
.|||. +++||+..+|.+ .|.++++.+.-+.++..||.|++- .|.+..
T Consensus 103 AsyV~g~~~~~~fIaTQ~Pl~-------~T~~dFW~MIwe~~v~vIVMLt~~~e~~~kc~~YWP~~~~~~~~~g~~~V~~ 175 (323)
T PHA02746 103 ANFVDGFKEANKFICAQGPKE-------DTSEDFFKLISEHESQVIVSLTDIDDDDEKCFELWTKEEDSELAFGRFVAKI 175 (323)
T ss_pred EecccCCCCCCeEEEeCCCCh-------hhHHHHHHHHHhhCCCEEEEecccccCCccCCCCCCCCCCCCeEEcCEEEEE
Confidence 46663 578999999977 367889999999999999999841 132110
Q ss_pred --------c-------------ccCCcEEEE-eecCCCCCCCh-HHHHHHHHHHHc--------------CCCcEEEEcC
Q psy3113 243 --------F-------------TEAGLDHVD-FYFPDGTAPPN-DILCEFIKVCEK--------------YKGPIAVHCK 285 (328)
Q Consensus 243 --------~-------------~~~gI~~~~-l~~~D~~~P~~-~~i~~fi~~~~~--------------~~~~VlVHC~ 285 (328)
+ +..-|.|++ ..|||+++|.. ..+.+|++.++. ..+||+|||+
T Consensus 176 ~~~~~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCs 255 (323)
T PHA02746 176 LDIIEELSFTKTRLMITDKISDTSREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCS 255 (323)
T ss_pred EEEEEcCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcC
Confidence 0 001244444 36999999974 467777776642 1379999999
Q ss_pred CCCChHHHHHHHHHH-HH----cCCCHHHHHHHHHhhhcccCCCCCCC
Q psy3113 286 AGLGRTGCLIGAYMI-KH----VRRRRTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 286 aGlGRTGtliaayLm-~~----~g~t~~eAi~~v~~r~~r~RPGsIeT 328 (328)
+|+|||||+||+..+ .+ ...+..+++..+ |.+|+|+|||
T Consensus 256 aGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~l----R~qR~~~Vqt 299 (323)
T PHA02746 256 AGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKI----RKQRHSSVFL 299 (323)
T ss_pred CCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHH----HhcccccCCC
Confidence 999999999998663 22 234455555555 4779999997
No 23
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.39 E-value=1.6e-12 Score=102.93 Aligned_cols=76 Identities=29% Similarity=0.500 Sum_probs=60.3
Q ss_pred EEEEeecCCCCCCCh-HHHHHHHHHHHc------CCCcEEEEcCCCCChHHHHHHHHHHHHc------CCCHHHHHHHHH
Q psy3113 249 DHVDFYFPDGTAPPN-DILCEFIKVCEK------YKGPIAVHCKAGLGRTGCLIGAYMIKHV------RRRRTVLTKRNQ 315 (328)
Q Consensus 249 ~~~~l~~~D~~~P~~-~~i~~fi~~~~~------~~~~VlVHC~aGlGRTGtliaayLm~~~------g~t~~eAi~~v~ 315 (328)
.++...|+|...|.. +.+.+|++.+.. .++||+|||.+|+||||++++++++... ..+..+++..++
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 456778999999976 678888887754 2689999999999999999999996542 246677777773
Q ss_pred hhhcccCCCCCCC
Q psy3113 316 YHQLRWVPGPLET 328 (328)
Q Consensus 316 ~r~~r~RPGsIeT 328 (328)
..|||+++|
T Consensus 84 ----~~r~~~~~~ 92 (105)
T smart00012 84 ----KQRPGMVQT 92 (105)
T ss_pred ----hhhhhhCCc
Confidence 559999876
No 24
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.39 E-value=1.6e-12 Score=102.93 Aligned_cols=76 Identities=29% Similarity=0.500 Sum_probs=60.3
Q ss_pred EEEEeecCCCCCCCh-HHHHHHHHHHHc------CCCcEEEEcCCCCChHHHHHHHHHHHHc------CCCHHHHHHHHH
Q psy3113 249 DHVDFYFPDGTAPPN-DILCEFIKVCEK------YKGPIAVHCKAGLGRTGCLIGAYMIKHV------RRRRTVLTKRNQ 315 (328)
Q Consensus 249 ~~~~l~~~D~~~P~~-~~i~~fi~~~~~------~~~~VlVHC~aGlGRTGtliaayLm~~~------g~t~~eAi~~v~ 315 (328)
.++...|+|...|.. +.+.+|++.+.. .++||+|||.+|+||||++++++++... ..+..+++..++
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 456778999999976 678888887754 2689999999999999999999996542 246677777773
Q ss_pred hhhcccCCCCCCC
Q psy3113 316 YHQLRWVPGPLET 328 (328)
Q Consensus 316 ~r~~r~RPGsIeT 328 (328)
..|||+++|
T Consensus 84 ----~~r~~~~~~ 92 (105)
T smart00404 84 ----KQRPGMVQT 92 (105)
T ss_pred ----hhhhhhCCc
Confidence 559999876
No 25
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.38 E-value=1.6e-12 Score=124.90 Aligned_cols=129 Identities=19% Similarity=0.332 Sum_probs=88.9
Q ss_pred cceee----cCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCC----------CCccc------c-----
Q psy3113 189 ISWIV----PNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKN----------YDERK------F----- 243 (328)
Q Consensus 189 ~nwIv----P~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~----------yd~~~------~----- 243 (328)
.|||. +.+||+..+|.. .|.++++.+.-+.++..||.|+... |.+.. +
T Consensus 83 AsyV~g~~~~~~yIaTQ~Pl~-------~T~~dFW~MVwe~~~~~IVMLt~~~~e~g~~kc~~YWp~~~~~~~~~g~~~V 155 (312)
T PHA02747 83 ANWIDGFEDDKKFIATQGPFA-------ETCADFWKAVWQEHCSIIVMLTPTKGTNGEEKCYQYWCLNEDGNIDMEDFRI 155 (312)
T ss_pred eeeecCCCCCCeEEEeCCCcc-------hhHHHHHHHHHhccCCEEEEcccccccCCcccccccCCCCCCCCeEeeeEEE
Confidence 45653 468999999977 3678899999999999999998421 32110 0
Q ss_pred ------------------cc------CCcEEEE-eecCCCCCCCh-HHHHHHHHHHHc--------------CCCcEEEE
Q psy3113 244 ------------------TE------AGLDHVD-FYFPDGTAPPN-DILCEFIKVCEK--------------YKGPIAVH 283 (328)
Q Consensus 244 ------------------~~------~gI~~~~-l~~~D~~~P~~-~~i~~fi~~~~~--------------~~~~VlVH 283 (328)
+. +-|.|.+ ..|||+++|.. ..+.+|+..++. ..+||+||
T Consensus 156 ~~~~~~~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVH 235 (312)
T PHA02747 156 ETLKTSVRAKYILTLIEITDKILKDSRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVH 235 (312)
T ss_pred EEEEEEecCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEE
Confidence 00 1134444 37999999964 466677665432 13799999
Q ss_pred cCCCCChHHHHHHHHH-HHHc----CCCHHHHHHHHHhhhcccCCCCCCC
Q psy3113 284 CKAGLGRTGCLIGAYM-IKHV----RRRRTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 284 C~aGlGRTGtliaayL-m~~~----g~t~~eAi~~v~~r~~r~RPGsIeT 328 (328)
|++|+|||||+||+.. +.+. ..+..+++..+ |++|+|+|+|
T Consensus 236 CsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~l----R~qR~~~Vqt 281 (312)
T PHA02747 236 CSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKI----REQRHAGIMN 281 (312)
T ss_pred ecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHH----HhccccccCC
Confidence 9999999999999976 3322 33445555544 4779999997
No 26
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.37 E-value=9.4e-12 Score=105.57 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=77.7
Q ss_pred hHHHHHhCCCcEEEEcCCCC-C--Ccc------ccccCCcEEEEeecCCCCCCChHHHHHHHHHHHcCCCcEEEEcCCCC
Q psy3113 218 YLDYFLQNGVQLVVRLNQKN-Y--DER------KFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGL 288 (328)
Q Consensus 218 ~i~~lk~~gI~~VV~L~~~~-y--d~~------~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~~~~~~~VlVHC~aGl 288 (328)
+++.|+++||++||||+... . .+. ..+..|++++++|+.... ++.+.+..|.+.++...+||++||++|.
T Consensus 19 d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~-~~~~~v~~f~~~~~~~~~pvL~HC~sG~ 97 (135)
T TIGR01244 19 DAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD-ITPDDVETFRAAIGAAEGPVLAYCRSGT 97 (135)
T ss_pred HHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC-CCHHHHHHHHHHHHhCCCCEEEEcCCCh
Confidence 58889999999999999532 1 111 124579999999987655 4677889999988888899999999999
Q ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHh
Q psy3113 289 GRTGCLIGAYMIKHVRRRRTVLTKRNQY 316 (328)
Q Consensus 289 GRTGtliaayLm~~~g~t~~eAi~~v~~ 316 (328)
|||.+.+.++.. .|++.+++++..+.
T Consensus 98 -Rt~~l~al~~~~-~g~~~~~i~~~~~~ 123 (135)
T TIGR01244 98 -RSSLLWGFRQAA-EGVPVEEIVRRAQA 123 (135)
T ss_pred -HHHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 999888777765 89999999998853
No 27
>PLN02727 NAD kinase
Probab=99.34 E-value=3.2e-11 Score=127.30 Aligned_cols=160 Identities=19% Similarity=0.257 Sum_probs=112.8
Q ss_pred ccHHHHHHHHHHHHhcccCCCCCCChHHHHHHHhhcCCC------------cceeecCcEEEeccCCCCCC-C-------
Q psy3113 150 LELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGD------------ISWIVPNKLLAFSGPNTTEQ-N------- 209 (328)
Q Consensus 150 lti~d~~~gl~ka~~~g~~~~~~fd~~ey~~~e~~~~gd------------~nwIvP~~fla~~~P~~~~~-g------- 209 (328)
.-+..|...++.|++.=+..-..-.++.|.+++++.|-- -.-.+||-...+.++...+. +
T Consensus 184 ~~~~~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~pr~~~~p~~~~~~n~~~v~~~~~~~~~~~~~~~~~~ 263 (986)
T PLN02727 184 GEMKRCCESLHVALENYLTPDDDRSLDVWRKLQRLKNVCYDAGFPRSDDYPCHTLFANWNPVYLSTSKEDIDSKESEAAF 263 (986)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHhhhhhcCCCCCCCCCCcccccccceeeecccccccccccceeeE
Confidence 345567888888987655544555678898888887422 12233443444444432000 0
Q ss_pred C--CCCChHHhHHHHHhCCCcEEEEcCCCCCC--------ccccccCCcEEEEeecCCCCCCChHHHHHHHHHH-HcCCC
Q psy3113 210 T--CYHPPEFYLDYFLQNGVQLVVRLNQKNYD--------ERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVC-EKYKG 278 (328)
Q Consensus 210 ~--~~~~pe~~i~~lk~~gI~~VV~L~~~~yd--------~~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~-~~~~~ 278 (328)
+ .-.+|++ ++.+.+.|+++||||+...-+ .+..+..|++++++|+.+...|+.+.+.+|.+.+ +...+
T Consensus 264 ~rsgQpspe~-la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpk 342 (986)
T PLN02727 264 WRGGQVTEEG-LKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKK 342 (986)
T ss_pred EEeCCCCHHH-HHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 0 1124554 788999999999999964421 1223467999999999999999999999999999 55789
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHcCCCHHHH
Q psy3113 279 PIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVL 310 (328)
Q Consensus 279 ~VlVHC~aGlGRTGtliaayLm~~~g~t~~eA 310 (328)
||++||++|.+|||+++|||+.+..+...+.+
T Consensus 343 PVLvHCKSGarRAGamvA~yl~~~~~~~~~~~ 374 (986)
T PLN02727 343 PIYLHSKEGVWRTSAMVSRWKQYMTRSAERLL 374 (986)
T ss_pred CEEEECCCCCchHHHHHHHHHHHHcccchhhh
Confidence 99999999999999999999987665543333
No 28
>PHA02738 hypothetical protein; Provisional
Probab=99.34 E-value=2.9e-12 Score=123.52 Aligned_cols=130 Identities=22% Similarity=0.322 Sum_probs=89.2
Q ss_pred Ccceee----cCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCC---------CCCccc------------
Q psy3113 188 DISWIV----PNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQK---------NYDERK------------ 242 (328)
Q Consensus 188 d~nwIv----P~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~---------~yd~~~------------ 242 (328)
|.|||. +.+||+..+|.. .+.++++.+.-+.+++.||-|++. .|.+..
T Consensus 79 NAsyVdg~~~~~kfI~TQ~Pl~-------~T~~dFW~MVwe~~v~~IVmL~~~~E~~~~kc~~YWp~~~~~~~~~g~f~V 151 (320)
T PHA02738 79 NANYVDGFEYKKKFICGQAPTR-------QTCYDFYRMLWMEHVQIIVMLCKKKENGREKCFPYWSDVEQGSIRFGKFKI 151 (320)
T ss_pred EeEEecCCCCCceeEEecCCCh-------HHHHHHHHHHHHhCCcEEEEeeehhhCCeeeccccCCCCCCCceEeccEEE
Confidence 346663 358999999977 367889999999999999999841 132210
Q ss_pred ----------c-------c-c----CCcEEEE-eecCCCCCCCh-HHHHHHHHHHHc-----------------CCCcEE
Q psy3113 243 ----------F-------T-E----AGLDHVD-FYFPDGTAPPN-DILCEFIKVCEK-----------------YKGPIA 281 (328)
Q Consensus 243 ----------~-------~-~----~gI~~~~-l~~~D~~~P~~-~~i~~fi~~~~~-----------------~~~~Vl 281 (328)
+ + . .-|.|.+ ..|||+++|.. ..+.+|+..+.+ ..+||+
T Consensus 152 ~~~~~~~~~~~~~~~l~l~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIV 231 (320)
T PHA02738 152 TTTQVETHPHYVKSTLLLTDGTSATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIV 231 (320)
T ss_pred EEEEEEecCCeEEEEEEEEeCCCCcEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeE
Confidence 0 0 0 1144444 46999999964 467777765542 147999
Q ss_pred EEcCCCCChHHHHHHHHH-HHHcC----CCHHHHHHHHHhhhcccCCCCCCC
Q psy3113 282 VHCKAGLGRTGCLIGAYM-IKHVR----RRRTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 282 VHC~aGlGRTGtliaayL-m~~~g----~t~~eAi~~v~~r~~r~RPGsIeT 328 (328)
|||++|+|||||+||+.. +.+.. .+..+++..+ |.+|+|+|+|
T Consensus 232 VHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~l----R~qR~~~vqt 279 (320)
T PHA02738 232 VHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSI----RNQRYYSLFI 279 (320)
T ss_pred EEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHH----HhhhhhccCC
Confidence 999999999999999976 44332 2334444444 4779999997
No 29
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.30 E-value=2.5e-11 Score=121.31 Aligned_cols=130 Identities=21% Similarity=0.244 Sum_probs=87.9
Q ss_pred ceeecCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCC---------CCc--------------------
Q psy3113 190 SWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKN---------YDE-------------------- 240 (328)
Q Consensus 190 nwIvP~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~---------yd~-------------------- 240 (328)
+|-..+++|+...|... ..+.++++.++-+.++..||-|+... |..
T Consensus 329 ~~~~k~~aIa~QYP~nt-----~eTieDFWrMVWEn~~~VIVMLT~l~E~g~~KC~pYW~~s~tYGdItVts~seesls~ 403 (535)
T PRK15375 329 TFDGKPVALAGSYPKNT-----PDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPYFRGSYTFGEVHTNSQKVSSASQ 403 (535)
T ss_pred eecCccceEeccCCCCc-----hhhHHHHHHHHHHcCCCEEEEeeccccCcccccCccCCCcceeccEEEEEEEEEeccC
Confidence 44455677777766431 02467899999999999999998521 200
Q ss_pred ----ccc-------c-cCCcEEEEe-ecCCCCCCCh-HHHHHHHHHHHcC------------CCcEEEEcCCCCChHHHH
Q psy3113 241 ----RKF-------T-EAGLDHVDF-YFPDGTAPPN-DILCEFIKVCEKY------------KGPIAVHCKAGLGRTGCL 294 (328)
Q Consensus 241 ----~~~-------~-~~gI~~~~l-~~~D~~~P~~-~~i~~fi~~~~~~------------~~~VlVHC~aGlGRTGtl 294 (328)
..+ + ..-|.|+|+ .|||+++|+. +.+.+|++.+... .++.+|||+||+|||||+
T Consensus 404 g~iIR~f~L~Ik~~E~R~tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTF 483 (535)
T PRK15375 404 GEAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTM 483 (535)
T ss_pred CceEEEEEEEEecCCceeEEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHH
Confidence 000 0 012445554 6999988754 4577777766431 123479999999999999
Q ss_pred HHHHHHHHcC-CCHHHHHHHHHhhhcccCCC-CCCC
Q psy3113 295 IGAYMIKHVR-RRRTVLTKRNQYHQLRWVPG-PLET 328 (328)
Q Consensus 295 iaayLm~~~g-~t~~eAi~~v~~r~~r~RPG-sIeT 328 (328)
||+++|+..+ .+.++.+..+ |.+|+| +|||
T Consensus 484 IAi~llk~~~~~sle~IV~dl----R~qRng~MVQt 515 (535)
T PRK15375 484 AAALVLKDNPHSNLEQVRADF----RNSRNNRMLED 515 (535)
T ss_pred HHHHHHhccccCCHHHHHHHH----HhcCCcccccc
Confidence 9999987543 5677777766 367999 9987
No 30
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.22 E-value=5.8e-11 Score=103.51 Aligned_cols=114 Identities=16% Similarity=0.242 Sum_probs=61.7
Q ss_pred eeecCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCC---CCccccccCCcEEEEeecCCCCCCC-----
Q psy3113 191 WIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKN---YDERKFTEAGLDHVDFYFPDGTAPP----- 262 (328)
Q Consensus 191 wIvP~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~---yd~~~~~~~gI~~~~l~~~D~~~P~----- 262 (328)
.|-+|++.-...|.. .+++ +.+.|+++||++||+|+.+. ..+.. ...|++++++|+.+.....
T Consensus 15 ~ir~g~lyRS~~l~~-------lt~~-d~~~L~~lgI~tIiDLRs~~E~~~~p~~-~~~g~~~~~~p~~~~~~~~~~~~~ 85 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSN-------LTEA-DLERLRELGIRTIIDLRSPTERERAPDP-LIDGVQYVHIPIFGDDASSPDKLA 85 (164)
T ss_dssp TS-TTSEEEES--TT---------HH-HHHHHHHTT--EEEE-S-HHHHHHHS-----TT-EEEE--SS-S-TTH-----
T ss_pred eecCCcEEecCCcCc-------CCHH-HHHHHHhCCCCEEEECCCccccccCCCC-CcCCceeeeecccccccccccccc
Confidence 566788755454544 2444 58899999999999999642 11222 2348999999876544331
Q ss_pred ------------------------hHHHHHHHHHHHcCCCcEEEEcCCCCChHHHHHHHHHHHHcCCCHHHHHHHH
Q psy3113 263 ------------------------NDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRN 314 (328)
Q Consensus 263 ------------------------~~~i~~fi~~~~~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t~~eAi~~v 314 (328)
.+.+.++++.+.+..+||++||++|++|||.++|..|. -.|++.++.++--
T Consensus 86 ~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~-~lGV~~~~I~~DY 160 (164)
T PF13350_consen 86 ELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLS-LLGVPDEDIIADY 160 (164)
T ss_dssp -----HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHH-HTT--HHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHH-HcCCCHHHHHHHH
Confidence 01244455555555589999999999999977766665 4899988877643
No 31
>KOG0792|consensus
Probab=99.17 E-value=4.9e-11 Score=126.14 Aligned_cols=123 Identities=26% Similarity=0.392 Sum_probs=88.7
Q ss_pred CcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCC---------CCccc----------------------c
Q psy3113 195 NKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKN---------YDERK----------------------F 243 (328)
Q Consensus 195 ~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~---------yd~~~----------------------~ 243 (328)
+++||..||.+ +|-.+++.+..+.|++.|+-|+.+. |.+.. +
T Consensus 938 ~~YIA~QGPLp-------~T~~DFWQMVWEQ~~~lIvMlT~e~EggR~KchqYWPr~~~~t~~ygrf~v~~~~~~~t~~y 1010 (1144)
T KOG0792|consen 938 NRYIACQGPLP-------HTCTDFWQMVWEQGSTLIVMLTTEVEGGRVKCHQYWPRLGHETMEYGRFQVTCVFEQQTTCY 1010 (1144)
T ss_pred EEEEEecCCCc-------chHHHHHHHHHhcCceEEEEEeehhhcCeeccccccCCCCccceeccceEEEEEEecccccE
Confidence 46999999977 5778899999999999999998521 33221 0
Q ss_pred -------------ccCCcEEEE-eecCCCCCCChH-HHHHHHHHHHc----CCCcEEEEcCCCCChHHHHHHHHH----H
Q psy3113 244 -------------TEAGLDHVD-FYFPDGTAPPND-ILCEFIKVCEK----YKGPIAVHCKAGLGRTGCLIGAYM----I 300 (328)
Q Consensus 244 -------------~~~gI~~~~-l~~~D~~~P~~~-~i~~fi~~~~~----~~~~VlVHC~aGlGRTGtliaayL----m 300 (328)
+.+-|.|+. .-|||+++|++. .+..|++.++. .+.||+|||+||+||||++|.+-+ +
T Consensus 1011 ~tr~m~l~~~~t~eeR~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~ll 1090 (1144)
T KOG0792|consen 1011 VTREMTLKDLQTREERTVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLL 1090 (1144)
T ss_pred EEEeEEEeeccCCceeeeeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHH
Confidence 112233443 469999999865 68888887754 356999999999999999987644 4
Q ss_pred HH-cCCCHHHHHHHHHhhhcccCCCCCCC
Q psy3113 301 KH-VRRRRTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 301 ~~-~g~t~~eAi~~v~~r~~r~RPGsIeT 328 (328)
.+ ..+..-+.+..+ |.+|-++|||
T Consensus 1091 e~Ne~vdi~divr~m----R~QR~~mVQT 1115 (1144)
T KOG0792|consen 1091 EHNEPVDILDIVRTM----RDQRAMMVQT 1115 (1144)
T ss_pred hcCCCCCHHHHHHHH----HHHHhhhccc
Confidence 42 234455555555 3678999987
No 32
>KOG0790|consensus
Probab=99.16 E-value=1.8e-11 Score=119.42 Aligned_cols=105 Identities=24% Similarity=0.351 Sum_probs=76.0
Q ss_pred HHHHhCCCcEEEEcCCCC---CC----------ccccccCCcEEEEeecCCCCCCChH-HHHHHHHHHHc------CCCc
Q psy3113 220 DYFLQNGVQLVVRLNQKN---YD----------ERKFTEAGLDHVDFYFPDGTAPPND-ILCEFIKVCEK------YKGP 279 (328)
Q Consensus 220 ~~lk~~gI~~VV~L~~~~---yd----------~~~~~~~gI~~~~l~~~D~~~P~~~-~i~~fi~~~~~------~~~~ 279 (328)
..++++|+-.|-|..+.. |. ....+..-.+|+.+.|||+++|.++ .+..|++.+.. .-||
T Consensus 374 ~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~Agp 453 (600)
T KOG0790|consen 374 GALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGP 453 (600)
T ss_pred cchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhccccccCc
Confidence 456778888887777532 21 1122333456778899999999876 79999998864 2479
Q ss_pred EEEEcCCCCChHHHHHHHHH----HHHcCCC----HHHHHHHHHhhhcccCCCCCCC
Q psy3113 280 IAVHCKAGLGRTGCLIGAYM----IKHVRRR----RTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 280 VlVHC~aGlGRTGtliaayL----m~~~g~t----~~eAi~~v~~r~~r~RPGsIeT 328 (328)
|+|||+||+|||||++...+ +...|+. ....|.+| |.+|.|+|||
T Consensus 454 IvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmV----RsqRSGmVQT 506 (600)
T KOG0790|consen 454 IVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMV----RSQRSGMVQT 506 (600)
T ss_pred EEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHH----HHHhcchhhh
Confidence 99999999999999988765 4455654 33444445 3779999998
No 33
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.15 E-value=2.5e-10 Score=93.72 Aligned_cols=96 Identities=23% Similarity=0.342 Sum_probs=60.8
Q ss_pred CcceeecCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCCC--C-------ccccccCCcEEEEeecCCC
Q psy3113 188 DISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNY--D-------ERKFTEAGLDHVDFYFPDG 258 (328)
Q Consensus 188 d~nwIvP~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~y--d-------~~~~~~~gI~~~~l~~~D~ 258 (328)
|+..|.+...+ +++. +|+ +++.+++.|+++|||++...- + .+..+..|+.|+++|+...
T Consensus 1 di~~i~~~~~v---s~Q~--------~~~-d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~ 68 (110)
T PF04273_consen 1 DIRQISDDLSV---SGQP--------SPE-DLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG 68 (110)
T ss_dssp --EEEETTEEE---ECS----------HH-HHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT
T ss_pred CCEecCCCeEE---CCCC--------CHH-HHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC
Confidence 45666666432 2333 355 599999999999999995421 1 1334688999999999875
Q ss_pred CCCChHHHHHHHHHHHcCCCcEEEEcCCCCChHHHHHHH
Q psy3113 259 TAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGA 297 (328)
Q Consensus 259 ~~P~~~~i~~fi~~~~~~~~~VlVHC~aGlGRTGtliaa 297 (328)
.++.+.+..|.+.+++..+||++||+.| .|++++.++
T Consensus 69 -~~~~~~v~~f~~~l~~~~~Pvl~hC~sG-~Ra~~l~~l 105 (110)
T PF04273_consen 69 -AITEEDVEAFADALESLPKPVLAHCRSG-TRASALWAL 105 (110)
T ss_dssp -T--HHHHHHHHHHHHTTTTSEEEE-SCS-HHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhCCCCEEEECCCC-hhHHHHHHH
Confidence 4678899999999999899999999999 599876654
No 34
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.11 E-value=1.9e-10 Score=106.22 Aligned_cols=127 Identities=23% Similarity=0.319 Sum_probs=83.6
Q ss_pred CcEEEeccCCCCCCCCCCCChHHhHHHHHhCCC--cEEEEcCCCC---------CCc-------------------ccc-
Q psy3113 195 NKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGV--QLVVRLNQKN---------YDE-------------------RKF- 243 (328)
Q Consensus 195 ~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI--~~VV~L~~~~---------yd~-------------------~~~- 243 (328)
++|||..+|.+ .+.+++++++-.... +.||.|+.-. |.+ +.+
T Consensus 92 ~~yIAtQgP~~-------~t~ddFW~mvw~n~~~~gvIVmLt~l~E~~rekc~qYWp~~~~~~~~~G~~v~~~~~~e~~~ 164 (302)
T COG5599 92 GKYIATQGPKP-------ETIDDFWKMVWHNVPNNGVIVMLTSLPEYNREKCDQYWPLGYDDTLIIGLRVIKQKKYELFN 164 (302)
T ss_pred CceEEecCCCC-------chHHHHHHHHHhcCCCceEEEEecChHHHhHHHHhhhCCCCcCcceeeeeEEEEEecccccc
Confidence 68999999987 255677777776544 7888887410 221 000
Q ss_pred ----------------ccCCcEEEEe-ecCCCCCCChHHHHHHHHHHHc---CCCcEEEEcCCCCChHHHHHHHHHHHHc
Q psy3113 244 ----------------TEAGLDHVDF-YFPDGTAPPNDILCEFIKVCEK---YKGPIAVHCKAGLGRTGCLIGAYMIKHV 303 (328)
Q Consensus 244 ----------------~~~gI~~~~l-~~~D~~~P~~~~i~~fi~~~~~---~~~~VlVHC~aGlGRTGtliaayLm~~~ 303 (328)
....|.|.+. .|.|...|+...+.++++-+.. ..+|++|||+||+|||||++|...+.+.
T Consensus 165 d~~~~~~~f~L~~~~~~~k~Ihhf~y~nW~D~~~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~ 244 (302)
T COG5599 165 DNIVNVHNFELTSINGPPKKIHHFQYINWVDFNVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRM 244 (302)
T ss_pred cceeeeeecccccCCCCccEEEEEEecCccccCCcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhc
Confidence 0112344443 5999999987778888887763 4799999999999999999999776543
Q ss_pred CCC-----H-----HHHHHHHHhhhcccCCCCCCC
Q psy3113 304 RRR-----R-----TVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 304 g~t-----~-----~eAi~~v~~r~~r~RPGsIeT 328 (328)
--. . .+.|.-+-...|++|..+|||
T Consensus 245 ~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn 279 (302)
T COG5599 245 PNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQN 279 (302)
T ss_pred cccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 211 1 123333323335777777775
No 35
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.08 E-value=6e-10 Score=100.76 Aligned_cols=130 Identities=24% Similarity=0.455 Sum_probs=92.4
Q ss_pred Ccceee----cCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCC---------CCc--------------
Q psy3113 188 DISWIV----PNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKN---------YDE-------------- 240 (328)
Q Consensus 188 d~nwIv----P~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~---------yd~-------------- 240 (328)
|.|||- ..+||+..+|.. .+.++++.+..+.+++.||.|+... |.+
T Consensus 31 ~A~~v~~~~~~~~~I~~q~P~~-------~t~~~FW~mv~~~~~~~Iv~L~~~~e~~~~~~~~y~P~~~~~~~~~g~~~V 103 (235)
T PF00102_consen 31 NASYVDGYKNGKKFIVTQAPMP-------DTIEDFWQMVWEQKVQIIVMLCSFDESGDEKCDQYWPLKEGESLKFGDYTV 103 (235)
T ss_dssp SEEEEEESSSTEEEEEEES-SG-------GGHHHHHHHHHHTTBSEEEEESBSEETTEESS--TSTSSSSSEEEETTEEE
T ss_pred hhhhhccccchhhheeeccccc-------ccccceehheeeccccceecccccccccccccccccccccccccccccccc
Confidence 557772 458999999965 3678899999999999999998421 111
Q ss_pred --c-ccc---------------------cCCcEEEE-eecCCCCCCC-hHHHHHHHHHHHc----CCCcEEEEcCCCCCh
Q psy3113 241 --R-KFT---------------------EAGLDHVD-FYFPDGTAPP-NDILCEFIKVCEK----YKGPIAVHCKAGLGR 290 (328)
Q Consensus 241 --~-~~~---------------------~~gI~~~~-l~~~D~~~P~-~~~i~~fi~~~~~----~~~~VlVHC~aGlGR 290 (328)
. ..+ ..-+.+++ ..|+|+..|. ...+.+|++.+.. ..+||+|||.+|.||
T Consensus 104 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~v~~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gR 183 (235)
T PF00102_consen 104 KCKEKIEENSKHYTVRKLEVTNGKSKKKSRTVTHFHYTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGR 183 (235)
T ss_dssp EEEEEEEEEESSEEEEEEEEEETTTTEEEEEEEEEEEESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHH
T ss_pred cccccccccccceEEeeccccccccccccccccceeeeeccccccccccchhhhhhhhccccccCCccceEeeccccccc
Confidence 0 000 01233444 4799999884 5567778777754 459999999999999
Q ss_pred HHHHHHHHHHHH-----cCCCHHHHHHHHHhhhcccCCCCCCC
Q psy3113 291 TGCLIGAYMIKH-----VRRRRTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 291 TGtliaayLm~~-----~g~t~~eAi~~v~~r~~r~RPGsIeT 328 (328)
||+++++.++.. ...+..+++..++ .+|||+|+|
T Consensus 184 sg~f~~~~~~~~~~~~~~~~~v~~~~~~lR----~~R~~~i~~ 222 (235)
T PF00102_consen 184 SGTFCAIDILIEQLKKEGEVDVFEIVKKLR----QQRPGAIQS 222 (235)
T ss_dssp HHHHHHHHHHHHHHHHHSEECHHHHHHHHH----TTSTTSSSS
T ss_pred ccccccchhhccccccccchhhHHHHHHHH----hhCCCccCC
Confidence 999999977432 2357778877773 569999986
No 36
>KOG2386|consensus
Probab=99.01 E-value=1.2e-09 Score=106.85 Aligned_cols=125 Identities=25% Similarity=0.404 Sum_probs=104.7
Q ss_pred eecCcEEEeccCCC------CCCCCCCCChHHhHHHHHhCC--CcEEEEcCC--CCCCccccccCCcEEEEeecCCCC-C
Q psy3113 192 IVPNKLLAFSGPNT------TEQNTCYHPPEFYLDYFLQNG--VQLVVRLNQ--KNYDERKFTEAGLDHVDFYFPDGT-A 260 (328)
Q Consensus 192 IvP~~fla~~~P~~------~~~g~~~~~pe~~i~~lk~~g--I~~VV~L~~--~~yd~~~~~~~gI~~~~l~~~D~~-~ 260 (328)
+.-++|+.+..|.. ...|.+.++|.+.+..++++| |..+++|+. ..|+....+..|+.|+.+..+.+. +
T Consensus 21 ~~~~rfi~~K~pL~~~~~~k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~v 100 (393)
T KOG2386|consen 21 IDDTRFIPFKTPLNSSYSTKTFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVV 100 (393)
T ss_pred cccceEEEEecccCCCCCcCCCCCccccCHHHHHHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcccC
Confidence 44468888888766 344555778999999999875 679999985 558888899999999999888655 8
Q ss_pred CChHHHHHHHHHHHc-------CCCcEEEEcCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHh
Q psy3113 261 PPNDILCEFIKVCEK-------YKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQY 316 (328)
Q Consensus 261 P~~~~i~~fi~~~~~-------~~~~VlVHC~aGlGRTGtliaayLm~~~g~t~~eAi~~v~~ 316 (328)
|+...+..|++++++ .+.-|+|||..|+.|||-++++|||...+++..+|++....
T Consensus 101 p~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~ 163 (393)
T KOG2386|consen 101 PRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFAD 163 (393)
T ss_pred CCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHH
Confidence 888888888887754 57899999999999999999999999999999999998753
No 37
>KOG0791|consensus
Probab=98.89 E-value=8.7e-09 Score=99.09 Aligned_cols=126 Identities=21% Similarity=0.320 Sum_probs=85.5
Q ss_pred CcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCC---------CCc------------------cc-----
Q psy3113 195 NKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKN---------YDE------------------RK----- 242 (328)
Q Consensus 195 ~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~---------yd~------------------~~----- 242 (328)
..|||..+|.+. ++++..++.-+.++..||-|+.-. |.+ ..
T Consensus 165 ~~fIAtQGPlp~-------t~~~fW~mvwq~~~~~IVmlt~~~e~~R~kc~~ywP~~~~~~~~gdi~V~~v~e~~~~~w~ 237 (374)
T KOG0791|consen 165 REFIATQGPLPE-------TRDDFWKMVWQQKSHIIVMLTKCNEKGRVKCDEYWPDEEVPVAYGDITVTMVSEESLDEWT 237 (374)
T ss_pred ceEEEeeCCCCC-------ChhHHHHHHHHhhcceEEEEeecccccchhhhhhcccccccceeccEEEEEechhhcCCce
Confidence 469999998773 567789999998888888776311 110 00
Q ss_pred ---------cccCCcE-EEEeecCCCCCCCh-HHHHHHHHHHHc----CCCcEEEEcCCCCChHHHHHHHHH-HHHcCCC
Q psy3113 243 ---------FTEAGLD-HVDFYFPDGTAPPN-DILCEFIKVCEK----YKGPIAVHCKAGLGRTGCLIGAYM-IKHVRRR 306 (328)
Q Consensus 243 ---------~~~~gI~-~~~l~~~D~~~P~~-~~i~~fi~~~~~----~~~~VlVHC~aGlGRTGtliaayL-m~~~g~t 306 (328)
-+...+. ++...|||+++|+. ..+.+|.+.+.+ ..+|+.|||+||+|||||++|..- +++.+.+
T Consensus 238 ir~~~l~~~~~sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~ 317 (374)
T KOG0791|consen 238 IREFRLNYAGESRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSE 317 (374)
T ss_pred EEEEeeecccccceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhccc
Confidence 0122233 44567999999953 367777776554 578999999999999999999965 5555555
Q ss_pred -HHHHHHHHHhhhcccCCCCCCC
Q psy3113 307 -RTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 307 -~~eAi~~v~~r~~r~RPGsIeT 328 (328)
..+....+ ...|..|+-+|||
T Consensus 318 ~~vdi~~iv-~~lR~~R~~mVqt 339 (374)
T KOG0791|consen 318 ETVDIFGVV-LELRSARMLMVQT 339 (374)
T ss_pred ccccHHHHH-HHhhhccccccch
Confidence 23333333 3335679999987
No 38
>KOG0793|consensus
Probab=98.85 E-value=7.5e-09 Score=105.74 Aligned_cols=126 Identities=25% Similarity=0.352 Sum_probs=87.2
Q ss_pred cEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCC---------CCCcc---------------------cc--
Q psy3113 196 KLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQK---------NYDER---------------------KF-- 243 (328)
Q Consensus 196 ~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~---------~yd~~---------------------~~-- 243 (328)
-+||..+|.+ .+..+++++..+.|+..||+|+.- .|+++ .|
T Consensus 804 aYIAtQgPl~-------stiA~FWQmvWe~G~~vIV~Lt~l~Engv~qc~rYWPdeGselyhiyEV~LVSEHIWceDfLV 876 (1004)
T KOG0793|consen 804 AYIATQGPLP-------STIADFWQMVWESGCVVIVMLTPLAENGVRQCYRYWPDEGSELYHIYEVNLVSEHIWCEDFLV 876 (1004)
T ss_pred ceeeccCCCc-------hHHHHHHHHHHHcCcEEEEEecChhhcchhhhhhcCCCCCcceeeeEEeeeehhhhhhhhHHH
Confidence 3666677766 356789999999999999999941 12210 00
Q ss_pred ------------ccCCcEEEEeecCCCCCCChH-HHHHHHHHHHc----CCCcEEEEcCCCCChHHHHHHHHHHH-HcCC
Q psy3113 244 ------------TEAGLDHVDFYFPDGTAPPND-ILCEFIKVCEK----YKGPIAVHCKAGLGRTGCLIGAYMIK-HVRR 305 (328)
Q Consensus 244 ------------~~~gI~~~~l~~~D~~~P~~~-~i~~fi~~~~~----~~~~VlVHC~aGlGRTGtliaayLm~-~~g~ 305 (328)
++---+++.+.|++.++|... .+.+|-+.+++ ...||+|||++|.|||||.|+..++. +..-
T Consensus 877 RSFYLKNlqtseTRTvTQFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~k 956 (1004)
T KOG0793|consen 877 RSFYLKNLQTSETRTVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAK 956 (1004)
T ss_pred HHHHHhhcccccceeeeeeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhc
Confidence 111124677899999999754 78889888876 46899999999999999999998743 2222
Q ss_pred CHHHH-HHHHHhhhcccCCCCCCC
Q psy3113 306 RRTVL-TKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 306 t~~eA-i~~v~~r~~r~RPGsIeT 328 (328)
.+.|. |+....+-|.+|||+|.|
T Consensus 957 GakeIDIaATlEHlRDQR~GmVaT 980 (1004)
T KOG0793|consen 957 GAKEIDIAATLEHLRDQRPGMVAT 980 (1004)
T ss_pred cchhhhHHHHHHHHhhcCCcceee
Confidence 22221 222224556899999987
No 39
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.77 E-value=7.4e-09 Score=89.31 Aligned_cols=66 Identities=24% Similarity=0.345 Sum_probs=50.8
Q ss_pred CCCCccccccCCcEEEEeecCCCCCCChHHHHHHHHHHHc--CCCcEEEEcCCCCChHHHHHHHHHHH
Q psy3113 236 KNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEK--YKGPIAVHCKAGLGRTGCLIGAYMIK 301 (328)
Q Consensus 236 ~~yd~~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~~~--~~~~VlVHC~aGlGRTGtliaayLm~ 301 (328)
..++....+..|+.|+++|++|+..|..+.+.+|++.+.+ .+..+++||.+|.|||.|++++|.|.
T Consensus 81 ~~~e~~~~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 81 EVTEEELVEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp -E-HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4456666778999999999999999999999999999887 46899999999999999999998874
No 40
>KOG4228|consensus
Probab=98.77 E-value=4.8e-09 Score=112.17 Aligned_cols=132 Identities=23% Similarity=0.358 Sum_probs=86.5
Q ss_pred cceee----cCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcC---CC------CCCcc--------------
Q psy3113 189 ISWIV----PNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLN---QK------NYDER-------------- 241 (328)
Q Consensus 189 ~nwIv----P~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~---~~------~yd~~-------------- 241 (328)
.|||. |++|||..||... +..|++.+..+.+-..||-++ +. .|.++
T Consensus 598 AnyIdGy~e~n~yIaaQgP~~e-------Tv~DFWRMVWEq~S~~IVMvTnl~E~~r~kC~qYWP~~t~~yGdi~V~~~~ 670 (1087)
T KOG4228|consen 598 ANYIDGYKEPNAYIAAQGPRPE-------TVGDFWRMVWEQKSAGIVMVTNLEEFSRVKCAQYWPEGTETYGDIKVTLVQ 670 (1087)
T ss_pred eeeeecccccccceeccCCccc-------chHHHHHHheeccCCcEEEEecccccccccccccCCCCcccccccccccee
Confidence 35554 5789999999772 456788888887777776555 21 13320
Q ss_pred --c--------c--------ccCCcEEE-EeecCCCCCCCh-HHHHHHHHHHHcC----CCcEEEEcCCCCChHHHHHHH
Q psy3113 242 --K--------F--------TEAGLDHV-DFYFPDGTAPPN-DILCEFIKVCEKY----KGPIAVHCKAGLGRTGCLIGA 297 (328)
Q Consensus 242 --~--------~--------~~~gI~~~-~l~~~D~~~P~~-~~i~~fi~~~~~~----~~~VlVHC~aGlGRTGtliaa 297 (328)
. | ..+-|.+. ...|||++.|.. ..+.+|++.+..- .|||+|||+||.||||++++.
T Consensus 671 ~~~~a~y~iRtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~i 750 (1087)
T KOG4228|consen 671 TKPLAEYGIRTFALKKQGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVI 750 (1087)
T ss_pred eeeeccceEEeeeccccCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEe
Confidence 0 0 01123333 346999999986 4788998888763 499999999999999999988
Q ss_pred HHHHHcC--CCHHHHHHHHHhhhcccCCCCCCC
Q psy3113 298 YMIKHVR--RRRTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 298 yLm~~~g--~t~~eAi~~v~~r~~r~RPGsIeT 328 (328)
..|...- ...-+....+. ..|++|+.+|||
T Consensus 751 Daml~~~~~e~~vdiy~~v~-~lR~QR~~mVQt 782 (1087)
T KOG4228|consen 751 DAMLDRLECEGKVDIYGHVK-TLRRQRNNMVQT 782 (1087)
T ss_pred HHHHHHHHhhCccceechhH-HHHhcccccccc
Confidence 7654211 11122222232 235789999997
No 41
>KOG1572|consensus
Probab=98.72 E-value=9.1e-08 Score=87.37 Aligned_cols=97 Identities=22% Similarity=0.367 Sum_probs=75.0
Q ss_pred hHHHHHhCCCcEEEEcCCCCCCcc---ccccCCcEEEEeecCCCC----CCChH----HHHHHHHH-HHcCCCcEEEEcC
Q psy3113 218 YLDYFLQNGVQLVVRLNQKNYDER---KFTEAGLDHVDFYFPDGT----APPND----ILCEFIKV-CEKYKGPIAVHCK 285 (328)
Q Consensus 218 ~i~~lk~~gI~~VV~L~~~~yd~~---~~~~~gI~~~~l~~~D~~----~P~~~----~i~~fi~~-~~~~~~~VlVHC~ 285 (328)
...+|+.++.++|+.|+.+.|..+ .++..+|+++++.+.... .|... .+.+.++. +...+.|++|||+
T Consensus 77 NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~ 156 (249)
T KOG1572|consen 77 NFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCK 156 (249)
T ss_pred chHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecC
Confidence 588999999999999998876543 458899999999987654 44432 34444443 4557899999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy3113 286 AGLGRTGCLIGAYMIKHVRRRRTVLTKRNQ 315 (328)
Q Consensus 286 aGlGRTGtliaayLm~~~g~t~~eAi~~v~ 315 (328)
-|..|||++|+|.- +..+|.....+..-+
T Consensus 157 rGkhRtg~lVgclR-klq~W~lssil~Ey~ 185 (249)
T KOG1572|consen 157 RGKHRTGCLVGCLR-KLQNWSLSSILDEYL 185 (249)
T ss_pred CCCcchhhhHHHHH-HHhccchhHHHHHHH
Confidence 99999999999988 556788776665544
No 42
>KOG0789|consensus
Probab=98.55 E-value=9.1e-08 Score=94.45 Aligned_cols=75 Identities=23% Similarity=0.351 Sum_probs=49.8
Q ss_pred EEEeecCCCCCCC-hHHHHHHHHH---H-HcCCCcEEEEcCCCCChHHHHHHHHH-HHHc-C----CCHHHHHHHHHhhh
Q psy3113 250 HVDFYFPDGTAPP-NDILCEFIKV---C-EKYKGPIAVHCKAGLGRTGCLIGAYM-IKHV-R----RRRTVLTKRNQYHQ 318 (328)
Q Consensus 250 ~~~l~~~D~~~P~-~~~i~~fi~~---~-~~~~~~VlVHC~aGlGRTGtliaayL-m~~~-g----~t~~eAi~~v~~r~ 318 (328)
++...|||.+.|. ...+..+++. . ....+|++|||++|+|||||+++... +... + ....+.+..+
T Consensus 267 ~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~i---- 342 (415)
T KOG0789|consen 267 YHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREI---- 342 (415)
T ss_pred EeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHH----
Confidence 3445799998887 3456666642 2 22468999999999999999998863 3321 1 1134444433
Q ss_pred cccCCCCCCC
Q psy3113 319 LRWVPGPLET 328 (328)
Q Consensus 319 ~r~RPGsIeT 328 (328)
|.+|+|+|||
T Consensus 343 R~qR~~~vqt 352 (415)
T KOG0789|consen 343 RYQRPGAVQS 352 (415)
T ss_pred HHHhhhcccc
Confidence 3559999987
No 43
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=1.6e-06 Score=71.54 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=76.1
Q ss_pred ChHHhHHHHHhCCCcEEEEcCCCCCC---------ccccccCCcEEEEeecCCCCCCChHHHHHHHHHHHcCCCcEEEEc
Q psy3113 214 PPEFYLDYFLQNGVQLVVRLNQKNYD---------ERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHC 284 (328)
Q Consensus 214 ~pe~~i~~lk~~gI~~VV~L~~~~yd---------~~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~~~~~~~VlVHC 284 (328)
+|+ ++..++.+|.++|||.+...-+ .+..+..|+.+.++|....+ .+.+.+..|.+.+.+.++||+.||
T Consensus 17 ~~~-D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~-iT~~dV~~f~~Al~eaegPVlayC 94 (130)
T COG3453 17 SPA-DIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGG-ITEADVEAFQRALDEAEGPVLAYC 94 (130)
T ss_pred CHH-HHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCC-CCHHHHHHHHHHHHHhCCCEEeee
Confidence 455 5899999999999999953211 23447789999999976544 445679999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy3113 285 KAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYH 317 (328)
Q Consensus 285 ~aGlGRTGtliaayLm~~~g~t~~eAi~~v~~r 317 (328)
+.| .|+-++=+.-. ...||+.+|+.+.-+.+
T Consensus 95 rsG-tRs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 95 RSG-TRSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred cCC-chHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 999 78754444333 34799999998876543
No 44
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.25 E-value=1.7e-06 Score=80.74 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=60.8
Q ss_pred HHHHHhCCCcEEEEcCC-CCCCccccc--------cCCcEEEEeecCCCCCCChHHHHHHHHHHHcCC-CcEEEEcCCCC
Q psy3113 219 LDYFLQNGVQLVVRLNQ-KNYDERKFT--------EAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYK-GPIAVHCKAGL 288 (328)
Q Consensus 219 i~~lk~~gI~~VV~L~~-~~yd~~~~~--------~~gI~~~~l~~~D~~~P~~~~i~~fi~~~~~~~-~~VlVHC~aGl 288 (328)
.+....+++.++++|.. .......++ ..++.....+-........+.+..++..+...+ +||++||++|+
T Consensus 68 ~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~e~~PvL~HC~~Gk 147 (249)
T COG2365 68 PELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLLADAENGPVLIHCTAGK 147 (249)
T ss_pred ccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHHHHHHhhcccCCEEEecCCCC
Confidence 34677789999999996 222221111 122222222222233334556777777666655 99999999999
Q ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHH
Q psy3113 289 GRTGCLIGAYMIKHVRRRRTVLTKRN 314 (328)
Q Consensus 289 GRTGtliaayLm~~~g~t~~eAi~~v 314 (328)
.|||+++|+|+....+.....+-+++
T Consensus 148 dRTGl~~al~r~~~~~~~~~v~~dyl 173 (249)
T COG2365 148 DRTGLVAALYRKLVGGSDETVAADYL 173 (249)
T ss_pred cchHHHHHHHHHHhCCchhHHHHHHH
Confidence 99999999999885555555555554
No 45
>KOG4228|consensus
Probab=98.19 E-value=2.1e-06 Score=92.40 Aligned_cols=124 Identities=25% Similarity=0.377 Sum_probs=75.8
Q ss_pred cCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCC-------CCc-------------------------c
Q psy3113 194 PNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKN-------YDE-------------------------R 241 (328)
Q Consensus 194 P~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~-------yd~-------------------------~ 241 (328)
|..||+..+|.. ++.++.+.+.-++++++||.|++.. |.+ .
T Consensus 894 ~~~fivtq~PL~-------~T~~DFWrmi~d~~~tsiVmL~~l~~~~~C~qyw~~~g~~~yg~i~Ve~~~~~~~~~~t~r 966 (1087)
T KOG4228|consen 894 PKAFIVTQGPLA-------ETVEDFWRMIWDQNVTSIVMLTELKHPEKCPQYWPPEGSQRYGPIEVEDMNEHINPQYTAR 966 (1087)
T ss_pred cceEEEecCCcc-------cchHHHHHHhhccceeEEEEecccCcccccccccCCcCceecCcEEEEecccccchhhhhh
Confidence 345666666655 3678899999999999999999521 111 1
Q ss_pred cc-----ccC----CcEEEEeecCCCCCCChH--HHHHHHHHHH---c--CCCcEEEEcCCCCChHHHHHHHHHHH-HcC
Q psy3113 242 KF-----TEA----GLDHVDFYFPDGTAPPND--ILCEFIKVCE---K--YKGPIAVHCKAGLGRTGCLIGAYMIK-HVR 304 (328)
Q Consensus 242 ~~-----~~~----gI~~~~l~~~D~~~P~~~--~i~~fi~~~~---~--~~~~VlVHC~aGlGRTGtliaayLm~-~~g 304 (328)
.| .+. -.+++...||....|... .+........ + ..+|+.|||.+|.||||++||+-++. +..
T Consensus 967 ~f~i~n~~~~~~r~v~qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~ 1046 (1087)
T KOG4228|consen 967 EFGVTNEREKQSRTVRQFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMR 1046 (1087)
T ss_pred hheeeeccccCceEEEEEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHh
Confidence 11 000 122334467765555432 3333333322 1 37999999999999999999986633 211
Q ss_pred ----CCHHHHHHHHHhhhcccCCCCCCC
Q psy3113 305 ----RRRTVLTKRNQYHQLRWVPGPLET 328 (328)
Q Consensus 305 ----~t~~eAi~~v~~r~~r~RPGsIeT 328 (328)
++.-.+...+ |.+|||+|+|
T Consensus 1047 ~e~~vDVfq~vk~L----r~~rp~mv~t 1070 (1087)
T KOG4228|consen 1047 KEGVVDVFQTVKTL----RFQRPGMVDT 1070 (1087)
T ss_pred hcCceeeehhhhhh----hhcCccccCc
Confidence 1222333333 4779999986
No 46
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=98.17 E-value=1.2e-05 Score=66.94 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=57.6
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy3113 60 DFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (328)
Q Consensus 60 dfgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~~ 130 (328)
+.+......+.+.+..|++..++ .++++|||..+.+| |+++++||+|-..++|+++|++.++..
T Consensus 50 ~~~~~~~~~~~~~~~~i~~~~~~---~~~VlVHC~~G~~R----S~~v~~ayLm~~~~~~~~~A~~~v~~~ 113 (133)
T PF00782_consen 50 DPEEPILEHLDQAVEFIENAISE---GGKVLVHCKAGLSR----SGAVAAAYLMKKNGMSLEEAIEYVRSR 113 (133)
T ss_dssp STTSHGGGGHHHHHHHHHHHHHT---TSEEEEEESSSSSH----HHHHHHHHHHHHHTSSHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHhhhhhhcc---cceeEEEeCCCccc----chHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46667778899999999988665 58999999999999 999999999999999999999999876
No 47
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=98.00 E-value=3.2e-05 Score=67.95 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=62.5
Q ss_pred eccccCCCCCCCchhHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy3113 54 YLNFFGDFGPICLSTLYRYCDKLKAKLNS-STLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (328)
Q Consensus 54 y~~f~~dfgpl~l~~~~~~~~~l~~~l~~-~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~~ 130 (328)
..|+ .|++|.+.+.+-.|+..+++.+.. -...++++|||..+-.| |+++++||+|-..+++++||++.+.+.
T Consensus 66 ~~p~-~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigR----Sgt~~a~yL~~~~~~s~~eAi~~vr~~ 138 (166)
T PTZ00242 66 DWPF-DDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGR----APILVALALVEYGGMEPLDAVGFVREK 138 (166)
T ss_pred ecCC-CCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCH----HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3453 699999999999999999998864 12467899999999999 999999999998889999999999875
No 48
>KOG1720|consensus
Probab=97.83 E-value=7.3e-05 Score=67.49 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=64.7
Q ss_pred eeccccCCCCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHh
Q psy3113 53 VYLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQA 129 (328)
Q Consensus 53 ~y~~f~~dfgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~ 129 (328)
.|+=||.||++..++.+-+|...+...++ .+|.-|||-.+--| +.+||+||||-..++||.||+.-+..
T Consensus 118 h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~----~g~iaVHCkaGlGR----TG~liAc~lmy~~g~ta~eaI~~lR~ 186 (225)
T KOG1720|consen 118 HHDLFFADGSTPTDAIVKEFVKIVENAEK----GGKIAVHCKAGLGR----TGTLIACYLMYEYGMTAGEAIAWLRI 186 (225)
T ss_pred eeeeecCCCCCCCHHHHHHHHHHHHHHHh----cCeEEEEeccCCCc----hhHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 47788999999999999999999999997 58999999999999 99999999999999999999998874
No 49
>KOG1716|consensus
Probab=97.81 E-value=0.00013 Score=69.48 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=74.7
Q ss_pred ccceeecCeEEEEEccc---CCCCCCCCceEEEeeCCc-----eeecccc-------CCCCCCCchh-HHHHHHHHHHHh
Q psy3113 17 LFTEIQKDRLYFATFKS---NRERPTTTKIHFFCTDET-----HVYLNFF-------GDFGPICLST-LYRYCDKLKAKL 80 (328)
Q Consensus 17 ~~~e~i~~rly~~~~~~---~~~~~~~~~~~~f~~d~~-----~~y~~f~-------~dfgpl~l~~-~~~~~~~l~~~l 80 (328)
..+..|...||+.+... .+..+...-.+-.++..+ +...+.+ .|..-.+|.+ +-.-+..|+...
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~ 152 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAR 152 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHH
Confidence 46778888999988772 221111111222232221 1111111 4666777776 666777777777
Q ss_pred cCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy3113 81 NSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (328)
Q Consensus 81 ~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~~ 130 (328)
+. .+|++|||..+.+| +|+++.||+|.+.+++.++||+.++..
T Consensus 153 ~~---~~~vlVHC~~GvSR----Sat~viAYlM~~~~~~l~~A~~~vk~~ 195 (285)
T KOG1716|consen 153 EK---GGKVLVHCQAGVSR----SATLVIAYLMKYEGLSLEDAYELVKSR 195 (285)
T ss_pred hC---CCeEEEEcCCccch----hHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 65 79999999999999 999999999999999999999999965
No 50
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=97.78 E-value=0.00015 Score=60.80 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=49.7
Q ss_pred CchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy3113 65 CLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (328)
Q Consensus 65 ~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~~ 130 (328)
...++...+..++...+. .++++|||..+.+| |+++++||+|...|+|+++|++.++..
T Consensus 60 ~~~~~~~~~~~i~~~~~~---~~~VlVHC~~G~~R----S~~v~~~yl~~~~~~~~~~A~~~v~~~ 118 (138)
T smart00195 60 ISPYFPEAVEFIEDAEKK---GGKVLVHCQAGVSR----SATLIIAYLMKYRNLSLNDAYDFVKDR 118 (138)
T ss_pred hHHHHHHHHHHHHHHhcC---CCeEEEECCCCCch----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 345666667777776644 57899999999999 999999999999999999999999875
No 51
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.75 E-value=0.00013 Score=64.73 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=56.5
Q ss_pred eccccCCCCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcC-CCHHHHHHHHH
Q psy3113 54 YLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLK-FTPNEIYKALQ 128 (328)
Q Consensus 54 y~~f~~dfgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~-~~~~~a~~~~~ 128 (328)
+..=+.|+++..+..+.++...|+.+++.. +|++|||-.+-+| ||+|++||+|++++ +++++|+....
T Consensus 76 ~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g---~kVvVHC~~GigR----SgtviaA~lm~~~~~~~~~~~i~~~~ 144 (180)
T COG2453 76 LHLPILDGTVPDLEDLDKIVDFIEEALSKG---KKVVVHCQGGIGR----SGTVIAAYLMLYGGLSLADEAIAVKR 144 (180)
T ss_pred eeeeecCCCCCcHHHHHHHHHHHHHHHhcC---CeEEEEcCCCCch----HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 333346999999999999999999999974 4999999999999 99999999999955 55666655444
No 52
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=97.68 E-value=0.00015 Score=67.07 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=60.6
Q ss_pred eeccccCCCCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy3113 53 VYLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (328)
Q Consensus 53 ~y~~f~~dfgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~~ 130 (328)
.+.| +.|+++.+..++-+|...+++.++. .++++|||..+-.| |++|++||||- .|++|+||++.+...
T Consensus 141 ~~lp-ipDg~aPs~~~i~~~l~~i~~~l~~---g~~VaVHC~AGlGR----TGtl~AayLI~-~GmspeeAI~~VR~~ 209 (241)
T PTZ00393 141 HELI-FPDGDAPTVDIVSNWLTIVNNVIKN---NRAVAVHCVAGLGR----APVLASIVLIE-FGMDPIDAIVFIRDR 209 (241)
T ss_pred EEee-cCCCCCCCHHHHHHHHHHHHHHHhc---CCeEEEECCCCCCH----HHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 3444 4699999999999999999988853 56899999999999 99999999985 899999999999875
No 53
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=97.60 E-value=0.00092 Score=57.67 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=60.2
Q ss_pred HHhHHH-HHhCCCcEEEEcCCCC-CCcc--cc--cc-CCcEEEEeecCCC--CCCChHHHHHHHHHHHc--CCCcEEEEc
Q psy3113 216 EFYLDY-FLQNGVQLVVRLNQKN-YDER--KF--TE-AGLDHVDFYFPDG--TAPPNDILCEFIKVCEK--YKGPIAVHC 284 (328)
Q Consensus 216 e~~i~~-lk~~gI~~VV~L~~~~-yd~~--~~--~~-~gI~~~~l~~~D~--~~P~~~~i~~fi~~~~~--~~~~VlVHC 284 (328)
...+.. --++|-+++|+|.... +-.. .. +. .-+.+.++..+|. ..|....+...++.+.+ ...|++|||
T Consensus 21 l~~~ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC 100 (172)
T COG5350 21 LSVIAETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHC 100 (172)
T ss_pred HHHHHHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeee
Confidence 334444 4468999999998642 2111 11 11 2233444555543 46666677777777765 468999999
Q ss_pred CCCCChHHHHHHH-HHHHHcCCCHHHHHHHHH
Q psy3113 285 KAGLGRTGCLIGA-YMIKHVRRRRTVLTKRNQ 315 (328)
Q Consensus 285 ~aGlGRTGtliaa-yLm~~~g~t~~eAi~~v~ 315 (328)
.+|+|||...+.. -|.....+..+|.-+.++
T Consensus 101 ~aGISRStA~A~i~a~ala~~~de~ela~~Lr 132 (172)
T COG5350 101 YAGISRSTAAALIAALALAPDMDETELAERLR 132 (172)
T ss_pred ccccccchHHHHHHHHhhccccChHHHHHHHH
Confidence 9999998533211 122235677777766664
No 54
>KOG1719|consensus
Probab=97.56 E-value=0.00024 Score=61.44 Aligned_cols=63 Identities=16% Similarity=0.348 Sum_probs=54.4
Q ss_pred CCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy3113 61 FGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (328)
Q Consensus 61 fgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~~ 130 (328)
+|-.++..|.+-..+||+-.. +++.+-|||-.+-.| ||++++||+|-..+|||++|+..+...
T Consensus 87 ~~~Ps~~~i~~aVeFi~k~as---LGktvYVHCKAGRtR----SaTvV~cYLmq~~~wtpe~A~~~vr~i 149 (183)
T KOG1719|consen 87 TGAPSLENIQKAVEFIHKNAS---LGKTVYVHCKAGRTR----SATVVACYLMQHKNWTPEAAVEHVRKI 149 (183)
T ss_pred cCCCCHHHHHHHHHHHHhccc---cCCeEEEEecCCCcc----chhhhhhhhhhhcCCCHHHHHHHHHhc
Confidence 577788888888888877654 466788999999888 999999999999999999999999865
No 55
>KOG1718|consensus
Probab=97.44 E-value=0.00033 Score=61.40 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCcC
Q psy3113 72 YCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIA 137 (328)
Q Consensus 72 ~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~~~~~~~~p 137 (328)
-+.+||..-.+ .+|.+|||..+++| +|.|..||+|=|+++|+.|||..+++. +|...|
T Consensus 83 vAD~I~~v~~~---gG~TLvHC~AGVSR----SAsLClAYLmK~~~msLreAy~~vKa~-RpiIRP 140 (198)
T KOG1718|consen 83 VADKIHSVIMR---GGKTLVHCVAGVSR----SASLCLAYLMKYHCMSLREAYHWVKAR-RPIIRP 140 (198)
T ss_pred HHHHHHHHHhc---CCcEEEEEccccch----hHHHHHHHHHHHccchHHHHHHHHHhh-CceeCC
Confidence 46677776665 69999999999999 999999999999999999999999875 555666
No 56
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=97.43 E-value=0.00065 Score=56.52 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=51.7
Q ss_pred CCCCCCCch-hHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy3113 59 GDFGPICLS-TLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (328)
Q Consensus 59 ~dfgpl~l~-~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~~ 130 (328)
.|.+.-.+. .+-.++..++...+. .++++|||..+..| |++++++|+|...++++++|++.+.+.
T Consensus 56 ~D~~~~~~~~~~~~~~~~i~~~~~~---~~~vlVHC~~G~~R----s~~~~~~~l~~~~~~~~~~a~~~vr~~ 121 (139)
T cd00127 56 LDLPSQDISKYFDEAVDFIDDAREK---GGKVLVHCLAGVSR----SATLVIAYLMKTLGLSLREAYEFVKSR 121 (139)
T ss_pred eeCCCCChHHHHHHHHHHHHHHHhc---CCcEEEECCCCCch----hHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 355433443 455666777777664 46899999999999 999999999999999999999999875
No 57
>PRK12361 hypothetical protein; Provisional
Probab=97.15 E-value=0.0013 Score=67.92 Aligned_cols=71 Identities=11% Similarity=0.207 Sum_probs=60.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHH-cCCCHHHHHHHHHhcCCCCCcC
Q psy3113 59 GDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIY-LKFTPNEIYKALQANNKVPFIA 137 (328)
Q Consensus 59 ~dfgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~-~~~~~~~a~~~~~~~~~~~~~p 137 (328)
.|..+.++.++-+.+..|++..+. .++++|||..+.+| ||++++||+|-. .++|++||++.+++. +|...|
T Consensus 151 ~D~~~p~~~~l~~a~~~i~~~~~~---~~~VlVHC~~G~sR----Sa~vv~ayLm~~~~~~~~~eA~~~vr~~-Rp~v~~ 222 (547)
T PRK12361 151 LDHSVPTLAQLNQAINWIHRQVRA---NKSVVVHCALGRGR----SVLVLAAYLLCKDPDLTVEEVLQQIKQI-RKTARL 222 (547)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHC---CCeEEEECCCCCCc----HHHHHHHHHHHhccCCCHHHHHHHHHHH-CCCCCC
Confidence 366667899999999999998875 47899999999999 999999999977 589999999999876 444433
No 58
>KOG2283|consensus
Probab=95.82 E-value=0.0077 Score=60.60 Aligned_cols=108 Identities=16% Similarity=0.211 Sum_probs=81.5
Q ss_pred cceeecCeEEEEEcccCCCC---C-------------CCCceEEEeeCCce----------eeccccCCCCCCCchhHHH
Q psy3113 18 FTEIQKDRLYFATFKSNRER---P-------------TTTKIHFFCTDETH----------VYLNFFGDFGPICLSTLYR 71 (328)
Q Consensus 18 ~~e~i~~rly~~~~~~~~~~---~-------------~~~~~~~f~~d~~~----------~y~~f~~dfgpl~l~~~~~ 71 (328)
=+..|.+|+..+++-...-. + -..+.-.|++=.|- |+.==|.|-+|.+|.+|..
T Consensus 14 DltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L~~l~~ 93 (434)
T KOG2283|consen 14 DLTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPLELLCP 93 (434)
T ss_pred cceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCccccccceeecCCCCCCCCcHHHHHH
Confidence 57888999998887653320 1 11344455554222 2222267999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCC-HHHHHHHHHhc
Q psy3113 72 YCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFT-PNEIYKALQAN 130 (328)
Q Consensus 72 ~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~-~~~a~~~~~~~ 130 (328)
||+-++.-|+.- .++-++|||-++-.+ ++++||||||-..-.+ ++||+..+..+
T Consensus 94 ~c~~~~~WL~~d-~~nVvvvHCk~Gkgr----tg~~icA~L~~~~~~~ta~eald~~~~k 148 (434)
T KOG2283|consen 94 FCKSMDNWLSED-PKNVVVVHCKAGKGR----TGVMICAYLIYSGISATAEEALDYFNEK 148 (434)
T ss_pred HHHCHHHHHhcC-ccceEEEEccCCCcc----eEEEEeHHHHhhhhcCCHHHHHHHHhhh
Confidence 999999999753 478899999888888 9999999999887765 99999999865
No 59
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=95.68 E-value=0.023 Score=48.66 Aligned_cols=62 Identities=21% Similarity=0.126 Sum_probs=41.7
Q ss_pred cCCCCCCChHHHHHHHHHHHc------CCCcEEEEcCCCCCh----HHHHHHHHHHHHcCCCHHHHHHHHHh
Q psy3113 255 FPDGTAPPNDILCEFIKVCEK------YKGPIAVHCKAGLGR----TGCLIGAYMIKHVRRRRTVLTKRNQY 316 (328)
Q Consensus 255 ~~D~~~P~~~~i~~fi~~~~~------~~~~VlVHC~aGlGR----TGtliaayLm~~~g~t~~eAi~~v~~ 316 (328)
+.|.++.+...+-+|+..+++ ..+..+|||.+.-.+ ++.+++||+|...++|++||.+-+..
T Consensus 38 ~~DFGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~ 109 (141)
T PF14671_consen 38 YADFGPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLAS 109 (141)
T ss_dssp SS------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTT
T ss_pred cCcCCCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 579999999998888877654 357889999886555 78889999999999999999998743
No 60
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=95.57 E-value=0.11 Score=40.37 Aligned_cols=60 Identities=17% Similarity=0.324 Sum_probs=46.1
Q ss_pred eeccccCCCC-CCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcC
Q psy3113 53 VYLNFFGDFG-PICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLK 117 (328)
Q Consensus 53 ~y~~f~~dfg-pl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~ 117 (328)
.|.++ .|.| |-+-..+..|+..+++..+.....+..+|||..+..| |++++++|+++...
T Consensus 6 ~~~~W-pd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gR----tg~~~~~~~~~~~~ 66 (105)
T smart00404 6 HYTGW-PDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGR----TGTFVALDILLQQL 66 (105)
T ss_pred eeCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCh----hhHHHHHHHHHHHH
Confidence 34443 2555 5555889999999999887654567999999999999 89999999888653
No 61
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=95.57 E-value=0.11 Score=40.37 Aligned_cols=60 Identities=17% Similarity=0.324 Sum_probs=46.1
Q ss_pred eeccccCCCC-CCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcC
Q psy3113 53 VYLNFFGDFG-PICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLK 117 (328)
Q Consensus 53 ~y~~f~~dfg-pl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~ 117 (328)
.|.++ .|.| |-+-..+..|+..+++..+.....+..+|||..+..| |++++++|+++...
T Consensus 6 ~~~~W-pd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gR----tg~~~~~~~~~~~~ 66 (105)
T smart00012 6 HYTGW-PDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGR----TGTFVALDILLQQL 66 (105)
T ss_pred eeCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCh----hhHHHHHHHHHHHH
Confidence 34443 2555 5555889999999999887654567999999999999 89999999888653
No 62
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=94.69 E-value=0.1 Score=45.92 Aligned_cols=59 Identities=19% Similarity=0.414 Sum_probs=39.5
Q ss_pred cCCCCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcC--CCHHHHH
Q psy3113 58 FGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLK--FTPNEIY 124 (328)
Q Consensus 58 ~~dfgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~--~~~~~a~ 124 (328)
..|+|...++........|+..|++ .+|++|||-++--| |.++.+| +++.++ ++|++|+
T Consensus 108 I~D~~aPd~~~~~~i~~eL~~~L~~---g~~V~vHC~GGlGR----tGlvAAc-LLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 108 IPDGSAPDFAAAWQILEELAARLEN---GRKVLVHCRGGLGR----TGLVAAC-LLLELGDTMSPEQAI 168 (168)
T ss_dssp --TTS---HHHHHHHHHHHHHHHHT---T--EEEE-SSSSSH----HHHHHHH-HHHHH-SSS-HHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHc---CCEEEEECCCCCCH----HHHHHHH-HHHHHcCCCChhhcC
Confidence 4799988999888999999999987 57999999999999 5555544 444444 8999986
No 63
>KOG2386|consensus
Probab=92.87 E-value=0.069 Score=52.92 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=54.3
Q ss_pred CCchhHHHHHHHHHHHhcCCCCCC-cEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCC
Q psy3113 64 ICLSTLYRYCDKLKAKLNSSTLKH-KVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVP 134 (328)
Q Consensus 64 l~l~~~~~~~~~l~~~l~~~~~~~-~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~~~~~~ 134 (328)
....++-.|...+++...+..+.+ -.+||||.+..+ .-+|||+|||...+++..+|++.|... .++
T Consensus 101 p~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~Nr----tgyLI~~yL~~~~~~s~~~aik~f~~~-r~~ 167 (393)
T KOG2386|consen 101 PRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNR----TGYLICAYLADVGGYSSSEAIKRFADA-RPP 167 (393)
T ss_pred CCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccc----cceeeeeeeeeccCccHHHHHHHHHHh-CCC
Confidence 355677888888888777555444 467999999999 899999999999999999999999976 444
No 64
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=92.37 E-value=0.77 Score=41.63 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=54.5
Q ss_pred eeccccCCCC-CCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHc-----CCCHHHHHHH
Q psy3113 53 VYLNFFGDFG-PICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYL-----KFTPNEIYKA 126 (328)
Q Consensus 53 ~y~~f~~dfg-pl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~-----~~~~~~a~~~ 126 (328)
.|.+. .|+| |-+...+..|+..+++..+. ...+..+|||..+..| |++++++++++.+ ..++.+|+..
T Consensus 134 ~~~~W-~d~~~p~~~~~~~~~~~~v~~~~~~-~~~~pivVHC~~G~gR----sg~~~a~~~~~~~~~~~~~~~~~~~v~~ 207 (231)
T cd00047 134 QYTGW-PDHGVPESPDSLLDLLRKVRKSQQQ-PGSGPIVVHCSAGVGR----TGTFIAIDILLQRLEAEGVVDIFQTVKE 207 (231)
T ss_pred eECCC-CCCCccCChHHHHHHHHHHHHHhcc-CCCCCeEEECCCCCCc----cchHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 35544 4666 55667888999998877653 2357899999999999 8888888887765 5788888888
Q ss_pred HHhc
Q psy3113 127 LQAN 130 (328)
Q Consensus 127 ~~~~ 130 (328)
+.++
T Consensus 208 iR~~ 211 (231)
T cd00047 208 LRSQ 211 (231)
T ss_pred HHhc
Confidence 8765
No 65
>PLN02160 thiosulfate sulfurtransferase
Probab=91.84 E-value=0.88 Score=38.37 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=45.0
Q ss_pred ChHHhHHHHHhCCCcEEEEcCCCC-CCccccccCCcEEEEeecCC----CCCCChHHHHHHHHHHHcCCCcEEEEcCCCC
Q psy3113 214 PPEFYLDYFLQNGVQLVVRLNQKN-YDERKFTEAGLDHVDFYFPD----GTAPPNDILCEFIKVCEKYKGPIAVHCKAGL 288 (328)
Q Consensus 214 ~pe~~i~~lk~~gI~~VV~L~~~~-yd~~~~~~~gI~~~~l~~~D----~~~P~~~~i~~fi~~~~~~~~~VlVHC~aGl 288 (328)
++++..+.++ .+ ..||++++.. |....+... .++.+|+.+ ....+.+.+.++.. ....+.+|+|||..|
T Consensus 18 ~~~e~~~~~~-~~-~~lIDVR~~~E~~~ghIpgA--~~iniP~~~~~~~~~l~~~~~~~~~~~-~~~~~~~IivyC~sG- 91 (136)
T PLN02160 18 DVSQAKTLLQ-SG-HQYLDVRTQDEFRRGHCEAA--KIVNIPYMLNTPQGRVKNQEFLEQVSS-LLNPADDILVGCQSG- 91 (136)
T ss_pred CHHHHHHHHh-CC-CEEEECCCHHHHhcCCCCCc--ceecccchhcCcccccCCHHHHHHHHh-ccCCCCcEEEECCCc-
Confidence 4555444544 35 3689998743 433222221 134556532 22222222222222 124678999999999
Q ss_pred ChHHHHHHHHHHHHcCCC
Q psy3113 289 GRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 289 GRTGtliaayLm~~~g~t 306 (328)
+||.. |+..+...|++
T Consensus 92 ~RS~~--Aa~~L~~~G~~ 107 (136)
T PLN02160 92 ARSLK--ATTELVAAGYK 107 (136)
T ss_pred HHHHH--HHHHHHHcCCC
Confidence 88863 34444567775
No 66
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=91.75 E-value=2.2 Score=37.11 Aligned_cols=95 Identities=6% Similarity=-0.073 Sum_probs=50.6
Q ss_pred CCCCCCCChHHhHHHHHhCCCcEEEEcCCCC-CCccccc-----------cCCcEEEEeec---CCCCCCChHHHHHHHH
Q psy3113 207 EQNTCYHPPEFYLDYFLQNGVQLVVRLNQKN-YDERKFT-----------EAGLDHVDFYF---PDGTAPPNDILCEFIK 271 (328)
Q Consensus 207 ~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~-yd~~~~~-----------~~gI~~~~l~~---~D~~~P~~~~i~~fi~ 271 (328)
.++....+++...+.+.+-+ ..||++++.. ++.+..+ -.| -+.+|+ .+...+..+.+.+.+.
T Consensus 32 ~~~~~~vs~~el~~~l~~~~-~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPG--Av~ip~~~~~~l~~~~~~~~~~~l~ 108 (162)
T TIGR03865 32 LKGARVLDTEAAQALLARGP-VALIDVYPRPPKPKNLLEGTVWRDEPRLNIPG--SLWLPNTGYGNLAPAWQAYFRRGLE 108 (162)
T ss_pred cCCccccCHHHHHHHHhCCC-cEEEECCCCccccccccccceeccccCCCCCC--cEEecccCCCCCCCchhHHHHHHHH
Confidence 34555667787777776544 4589998643 1111110 112 123333 2222222222333332
Q ss_pred HHH--cCCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 272 VCE--KYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 272 ~~~--~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
... ..+.+|+|.|..|..||.. ++++++..|++
T Consensus 109 ~~~~~~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 109 RATGGDKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred HhcCCCCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 221 4678999999998767764 56666667876
No 67
>KOG4471|consensus
Probab=91.48 E-value=0.29 Score=50.60 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=24.2
Q ss_pred HHHHcCCCcEEEEcCCCCChHHHHHHHHH
Q psy3113 271 KVCEKYKGPIAVHCKAGLGRTGCLIGAYM 299 (328)
Q Consensus 271 ~~~~~~~~~VlVHC~aGlGRTGtliaayL 299 (328)
+.++..+.+|+|||+.|=+||..+++.-+
T Consensus 368 ~kVe~~~~sVlVHCSDGWDRT~QlvsLA~ 396 (717)
T KOG4471|consen 368 DKVESESRSVLVHCSDGWDRTAQLVSLAM 396 (717)
T ss_pred HHHhcCCceEEEEcCCCccchHHHHHHHH
Confidence 34556789999999999999999987754
No 68
>KOG1717|consensus
Probab=90.76 E-value=0.84 Score=43.17 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=58.4
Q ss_pred EeeCCceeeccc-cCCCCCCCchhHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHH
Q psy3113 46 FCTDETHVYLNF-FGDFGPICLSTLYR-YCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEI 123 (328)
Q Consensus 46 f~~d~~~~y~~f-~~dfgpl~l~~~~~-~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a 123 (328)
|-=|.++.|.-. -.|----||.+++. ....|++..++ .--++|||--+.+| ++++.+||+|=.++.|..+|
T Consensus 212 fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk---~cgvLVHClaGISR----SvTvtvaYLMqkl~lslndA 284 (343)
T KOG1717|consen 212 FENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSK---NCGVLVHCLAGISR----SVTVTVAYLMQKLNLSLNDA 284 (343)
T ss_pred hhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhcc---CCcEEEeeeccccc----hhHHHHHHHHHHhccchhhH
Confidence 333445554322 13444567777764 45567777765 56799999999999 99999999999999999999
Q ss_pred HHHHHhc
Q psy3113 124 YKALQAN 130 (328)
Q Consensus 124 ~~~~~~~ 130 (328)
|..++..
T Consensus 285 yd~Vk~k 291 (343)
T KOG1717|consen 285 YDFVKHK 291 (343)
T ss_pred HHHHHHh
Confidence 9999864
No 69
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=88.59 E-value=2.3 Score=43.30 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=52.6
Q ss_pred CCcEEEEcCCCCCCccccccCCcEEEEeecCCCCCCChH------HHHHHHHHHHc--CCCcEEEEcCCCCChHHHHHHH
Q psy3113 226 GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPND------ILCEFIKVCEK--YKGPIAVHCKAGLGRTGCLIGA 297 (328)
Q Consensus 226 gI~~VV~L~~~~yd~~~~~~~gI~~~~l~~~D~~~P~~~------~i~~fi~~~~~--~~~~VlVHC~aGlGRTGtliaa 297 (328)
....||++.+...... -......+++++.+.+...+.. .+..|+..... ++.+|+|+|..|.+.|..++.+
T Consensus 318 ~~~~vI~~s~~~~~~~-~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLa 396 (451)
T PF04179_consen 318 EFDCVINCSESPTPKE-SWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALA 396 (451)
T ss_pred CcCEEEEcCCCccccc-ccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHH
Confidence 4567777776544321 1234557888888877766533 34445444333 3889999999999999888888
Q ss_pred HHHHHcCC
Q psy3113 298 YMIKHVRR 305 (328)
Q Consensus 298 yLm~~~g~ 305 (328)
.|...+.-
T Consensus 397 ILc~~Fd~ 404 (451)
T PF04179_consen 397 ILCKLFDD 404 (451)
T ss_pred HHHHhcCc
Confidence 88766543
No 70
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=88.51 E-value=1.7 Score=33.98 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=20.8
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 275 KYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 275 ~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
.++.+|+|+|..| .||... +..+...|++
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a--~~~L~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA--SAYLKERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH--HHHHHHhCCc
Confidence 4678999999998 888643 3344557775
No 71
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=86.69 E-value=1.2 Score=43.88 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=21.6
Q ss_pred HHHcCCCcEEEEcCCCCChHHHHHHHHHH
Q psy3113 272 VCEKYKGPIAVHCKAGLGRTGCLIGAYMI 300 (328)
Q Consensus 272 ~~~~~~~~VlVHC~aGlGRTGtliaayLm 300 (328)
.+...+..|+|||..|-+||..++++..+
T Consensus 226 ~l~~~~~~Vlvh~~dGwDrt~q~~sL~ql 254 (353)
T PF06602_consen 226 LLHDEGSSVLVHCSDGWDRTSQLSSLAQL 254 (353)
T ss_dssp HHHTT--EEEEECTTSSSHHHHHHHHHHH
T ss_pred HhhccCceEEEEcCCCCcccHHHHHHHHH
Confidence 34457899999999999999988776543
No 72
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=86.65 E-value=5.4 Score=33.48 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=38.0
Q ss_pred CCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy3113 64 ICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (328)
Q Consensus 64 l~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~~ 130 (328)
++-..+-.|...++ +. .+.+++||.++. | ++.|.+.++ ..+|++.+++++..+..
T Consensus 70 ~~~~~v~~f~~~~~----~~--~~pvL~HC~sG~-R----t~~l~al~~-~~~g~~~~~i~~~~~~~ 124 (135)
T TIGR01244 70 ITPDDVETFRAAIG----AA--EGPVLAYCRSGT-R----SSLLWGFRQ-AAEGVPVEEIVRRAQAA 124 (135)
T ss_pred CCHHHHHHHHHHHH----hC--CCCEEEEcCCCh-H----HHHHHHHHH-HHcCCCHHHHHHHHHHc
Confidence 46666766766665 21 356888887777 6 676665554 45999999999987654
No 73
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=86.56 E-value=3.3 Score=32.25 Aligned_cols=87 Identities=24% Similarity=0.447 Sum_probs=48.4
Q ss_pred ChHHhHHHHHhCCCcEEEEcCCC-CCCccccccCCcEEEEeecCC----CCCCChHHHHHHHHHHH---cCCCcEEEEcC
Q psy3113 214 PPEFYLDYFLQNGVQLVVRLNQK-NYDERKFTEAGLDHVDFYFPD----GTAPPNDILCEFIKVCE---KYKGPIAVHCK 285 (328)
Q Consensus 214 ~pe~~i~~lk~~gI~~VV~L~~~-~yd~~~~~~~gI~~~~l~~~D----~~~P~~~~i~~fi~~~~---~~~~~VlVHC~ 285 (328)
||+...+.+ +.+=..||+++.. .|....+. | -+++|++. ................. ..+..|+|+|.
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~--g--a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~ 75 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIP--G--AVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCS 75 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBET--T--EEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEES
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCC--C--Cccccccccccccccccccccccccccccccccccccceeeee
Confidence 366666666 5566788899853 23333221 2 25666633 33333344444443332 35678999996
Q ss_pred CCCChHHHHHHH---HHHHHcCCC
Q psy3113 286 AGLGRTGCLIGA---YMIKHVRRR 306 (328)
Q Consensus 286 aGlGRTGtliaa---yLm~~~g~t 306 (328)
.| .|++..+++ +.+...|++
T Consensus 76 ~~-~~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 76 SG-WRSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp SS-CHHHHHHHHHHHHHHHHTTTS
T ss_pred cc-cccchhHHHHHHHHHHHcCCC
Confidence 66 666666655 336656764
No 74
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=85.55 E-value=5 Score=36.99 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=51.0
Q ss_pred eeccccCCCCCC-CchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHc-----CCCHHHHHHH
Q psy3113 53 VYLNFFGDFGPI-CLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYL-----KFTPNEIYKA 126 (328)
Q Consensus 53 ~y~~f~~dfgpl-~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~-----~~~~~~a~~~ 126 (328)
.|.+. .|.|-. +...+-.|...+++..... .+..||||..+..| |+++++++.++.+ ..++.++++.
T Consensus 162 ~y~~W-~d~~~P~~~~~~~~~i~~v~~~~~~~--~~pivVHC~~G~gR----sg~f~a~~~~~~~l~~~~~v~v~~~v~~ 234 (258)
T smart00194 162 HYTNW-PDHGVPESPKSILDLVRAVRKSQSTS--TGPIVVHCSAGVGR----TGTFIAIDILLQQLEAGKEVDIFEIVKE 234 (258)
T ss_pred eeCCC-CCCCCCCCHHHHHHHHHHHHHhhccC--CCCEEEEeCCCCCc----cchhhHHHHHHHHHHHcCCCCHHHHHHH
Confidence 35444 366654 7778888888888776542 57899999999999 8888888776542 3567777777
Q ss_pred HHhc
Q psy3113 127 LQAN 130 (328)
Q Consensus 127 ~~~~ 130 (328)
+..+
T Consensus 235 lR~~ 238 (258)
T smart00194 235 LRSQ 238 (258)
T ss_pred HHhc
Confidence 7654
No 75
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=84.86 E-value=3.4 Score=32.17 Aligned_cols=28 Identities=11% Similarity=0.254 Sum_probs=19.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 276 YKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 276 ~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
.+.+|+|+|..| +||.. ++. .++..|++
T Consensus 60 ~~~~ivv~C~~G-~rs~~-aa~-~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVICAKE-GSSQF-VAE-LLAERGYD 87 (100)
T ss_pred CCCeEEEEcCCC-CcHHH-HHH-HHHHcCce
Confidence 578999999999 68753 333 44557775
No 76
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=84.31 E-value=5.5 Score=31.57 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=41.0
Q ss_pred CChHHhHHHHHhCCCcEEEEcCCCC-CCccccccCCcEEEEeecCCCCCCChHHHHHHHHHHH-cCCCcEEEEcCCCCCh
Q psy3113 213 HPPEFYLDYFLQNGVQLVVRLNQKN-YDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCE-KYKGPIAVHCKAGLGR 290 (328)
Q Consensus 213 ~~pe~~i~~lk~~gI~~VV~L~~~~-yd~~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~~-~~~~~VlVHC~aGlGR 290 (328)
.++++..+.+++..-..||++++.. |....+ .| -+.+ | ...+...+..+. ..+.+|+|+|..|. |
T Consensus 12 i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghI--pg--aini-------p-~~~l~~~~~~l~~~~~~~ivv~C~~G~-r 78 (109)
T cd01533 12 VSADELAALQARGAPLVVLDGRRFDEYRKMTI--PG--SVSC-------P-GAELVLRVGELAPDPRTPIVVNCAGRT-R 78 (109)
T ss_pred CCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcC--CC--ceeC-------C-HHHHHHHHHhcCCCCCCeEEEECCCCc-h
Confidence 3566655555543234688998632 222111 00 0112 2 223334444442 34679999999994 7
Q ss_pred HHHHHHHHHHHHcCCC
Q psy3113 291 TGCLIGAYMIKHVRRR 306 (328)
Q Consensus 291 TGtliaayLm~~~g~t 306 (328)
|.. ++..++..|++
T Consensus 79 s~~--a~~~L~~~G~~ 92 (109)
T cd01533 79 SII--GAQSLINAGLP 92 (109)
T ss_pred HHH--HHHHHHHCCCC
Confidence 743 34455667874
No 77
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=83.24 E-value=3.3 Score=36.92 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=45.5
Q ss_pred CceeeccccCCCCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHH
Q psy3113 50 ETHVYLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIY 115 (328)
Q Consensus 50 ~~~~y~~f~~dfgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~ 115 (328)
.-+.|...-.+-.|-+...+.+|+..+++..... .+-.||||..+..| |+.++++.+++.
T Consensus 136 ~~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~--~~pivVhc~~G~gR----sg~f~~~~~~~~ 195 (235)
T PF00102_consen 136 THFHYTNWPDDGVPPSPESFLDFIRKVNKSKDDP--NGPIVVHCSDGVGR----SGTFCAIDILIE 195 (235)
T ss_dssp EEEEEESSSSSSSGSSSHHHHHHHHHHHHHHSTT--SSEEEEESSSSSHH----HHHHHHHHHHHH
T ss_pred cceeeeeccccccccccchhhhhhhhccccccCC--ccceEeeccccccc----ccccccchhhcc
Confidence 3456777765566778999999999999988433 67888899888888 777777766543
No 78
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=81.69 E-value=5.5 Score=31.01 Aligned_cols=76 Identities=14% Similarity=0.227 Sum_probs=40.4
Q ss_pred HHHHHhCCCcEEEEcCCC-CCCccccccCCcE-EEEeecCCCCCCChHHHHHHHHHHHcCCCcEEEEcCCCCChHHHHHH
Q psy3113 219 LDYFLQNGVQLVVRLNQK-NYDERKFTEAGLD-HVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIG 296 (328)
Q Consensus 219 i~~lk~~gI~~VV~L~~~-~yd~~~~~~~gI~-~~~l~~~D~~~P~~~~i~~fi~~~~~~~~~VlVHC~aGlGRTGtlia 296 (328)
...+...+-..|+++++. .|+.... .. ..++|..+...-... .. ...+.+++|+|..| .||+ .++
T Consensus 12 ~~~~~~~~~~~liDvR~~~e~~~~~i----~~~~~~ip~~~~~~~~~~-----~~--~~~~~~ivv~C~~G-~rS~-~aa 78 (110)
T COG0607 12 AALLLAGEDAVLLDVREPEEYERGHI----PGAAINIPLSELKAAENL-----LE--LPDDDPIVVYCASG-VRSA-AAA 78 (110)
T ss_pred HHHhhccCCCEEEeccChhHhhhcCC----Ccceeeeecccchhhhcc-----cc--cCCCCeEEEEeCCC-CChH-HHH
Confidence 444555566788999876 2222111 11 333433321111000 00 55689999999999 7885 344
Q ss_pred HHHHHHcCCCHH
Q psy3113 297 AYMIKHVRRRRT 308 (328)
Q Consensus 297 ayLm~~~g~t~~ 308 (328)
.+|.. .|++..
T Consensus 79 ~~L~~-~G~~~~ 89 (110)
T COG0607 79 AALKL-AGFTNV 89 (110)
T ss_pred HHHHH-cCCccc
Confidence 45544 566543
No 79
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=81.00 E-value=4.6 Score=35.31 Aligned_cols=58 Identities=16% Similarity=0.387 Sum_probs=36.1
Q ss_pred CCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy3113 61 FGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQ 128 (328)
Q Consensus 61 fgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~ 128 (328)
+.|+.-.++-+....| |... ..-.+|||.++..+ +.+++|||. ..+||+...|+.=+.
T Consensus 71 ~~~~~~~~v~~aL~~i---ld~~--n~PvLiHC~~G~~r----TG~vvg~lR-k~Q~W~~~~i~~Ey~ 128 (164)
T PF03162_consen 71 WVPISEEQVAEALEII---LDPR--NYPVLIHCNHGKDR----TGLVVGCLR-KLQGWSLSSIFDEYR 128 (164)
T ss_dssp G----HHHHHHHHHHH---H-GG--G-SEEEE-SSSSSH----HHHHHHHHH-HHTTB-HHHHHHHHH
T ss_pred cccCCHHHHHHHHHHH---hCCC--CCCEEEEeCCCCcc----hhhHHHHHH-HHcCCCHHHHHHHHH
Confidence 4566666655444333 3322 23578888888888 999999999 679999999977654
No 80
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=79.22 E-value=16 Score=29.47 Aligned_cols=85 Identities=9% Similarity=0.074 Sum_probs=43.5
Q ss_pred ChHHhHHHHHhCCCcEEEEcCCCC-CC-ccccccCCcEEEEeecCCCCC--CChHHHHHHHHHHHcCCCcEEEEcCCCCC
Q psy3113 214 PPEFYLDYFLQNGVQLVVRLNQKN-YD-ERKFTEAGLDHVDFYFPDGTA--PPNDILCEFIKVCEKYKGPIAVHCKAGLG 289 (328)
Q Consensus 214 ~pe~~i~~lk~~gI~~VV~L~~~~-yd-~~~~~~~gI~~~~l~~~D~~~--P~~~~i~~fi~~~~~~~~~VlVHC~aGlG 289 (328)
+|++..+.+++..-..||+++++. |. ...+. | -+.+|+.+... +.. .....+......+.+|+|+|..| .
T Consensus 2 s~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIp--g--A~~ip~~~~~~~~~~~-~~~~~l~~~~~~~~~ivv~C~~G-~ 75 (117)
T cd01522 2 TPAEAWALLQADPQAVLVDVRTEAEWKFVGGVP--D--AVHVAWQVYPDMEINP-NFLAELEEKVGKDRPVLLLCRSG-N 75 (117)
T ss_pred CHHHHHHHHHhCCCeEEEECCCHHHHhcccCCC--C--ceecchhhccccccCH-HHHHHHHhhCCCCCeEEEEcCCC-c
Confidence 456666777764456789998632 33 21111 1 23344332211 111 11122222224678999999998 5
Q ss_pred hHHHHHHHHHHHHcCCC
Q psy3113 290 RTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 290 RTGtliaayLm~~~g~t 306 (328)
|+.. + +..+...|++
T Consensus 76 rs~~-a-a~~L~~~G~~ 90 (117)
T cd01522 76 RSIA-A-AEAAAQAGFT 90 (117)
T ss_pred cHHH-H-HHHHHHCCCC
Confidence 7753 3 3334557765
No 81
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=77.02 E-value=5.9 Score=30.86 Aligned_cols=85 Identities=12% Similarity=0.150 Sum_probs=42.4
Q ss_pred hHHhHHHHHhCCCcEEEEcCCC-CCCccccccCCcEEEEeecCC---CCCCChHHHHHHHHHHH-cCCCcEEEEcCCCCC
Q psy3113 215 PEFYLDYFLQNGVQLVVRLNQK-NYDERKFTEAGLDHVDFYFPD---GTAPPNDILCEFIKVCE-KYKGPIAVHCKAGLG 289 (328)
Q Consensus 215 pe~~i~~lk~~gI~~VV~L~~~-~yd~~~~~~~gI~~~~l~~~D---~~~P~~~~i~~fi~~~~-~~~~~VlVHC~aGlG 289 (328)
+++..+.+...+-..||+++++ .|....+ .| -+.+|+.+ ...++.+.+.+++.... ..+.+|+|+|..|.
T Consensus 3 ~~~~~~~l~~~~~~~iiDvR~~~e~~~ghI--pg--A~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~- 77 (106)
T cd01519 3 FEEVKNLPNPHPNKVLIDVREPEELKTGKI--PG--AINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGV- 77 (106)
T ss_pred HHHHHHhcCCCCCEEEEECCCHHHHhcCcC--CC--cEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcH-
Confidence 4444444431333578899864 2332222 11 13344332 11222333444433222 34789999999884
Q ss_pred hHHHHHHHHHHHHcCCC
Q psy3113 290 RTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 290 RTGtliaayLm~~~g~t 306 (328)
|+. .++.++...|++
T Consensus 78 ~s~--~~~~~l~~~G~~ 92 (106)
T cd01519 78 RSK--AAAELARSLGYE 92 (106)
T ss_pred HHH--HHHHHHHHcCCc
Confidence 654 345556667764
No 82
>KOG1089|consensus
Probab=74.43 E-value=4.5 Score=42.11 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHH
Q psy3113 276 YKGPIAVHCKAGLGRTGCLIGAY 298 (328)
Q Consensus 276 ~~~~VlVHC~aGlGRTGtliaay 298 (328)
.+.+|+|||..|-+||..++++.
T Consensus 343 ~~~sVlvhcsdGwDrT~qV~SLa 365 (573)
T KOG1089|consen 343 EGASVLVHCSDGWDRTCQVSSLA 365 (573)
T ss_pred CCCeEEEEccCCcchhHHHHHHH
Confidence 56899999999999998877663
No 83
>PRK01415 hypothetical protein; Validated
Probab=73.76 E-value=21 Score=33.47 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=43.1
Q ss_pred CCChHHhHHHHHhCCCcEEEEcCCCC-CCccccccCCcEEEEeecCCCCCCChHHHHHHHHHH-----HcCCCcEEEEcC
Q psy3113 212 YHPPEFYLDYFLQNGVQLVVRLNQKN-YDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVC-----EKYKGPIAVHCK 285 (328)
Q Consensus 212 ~~~pe~~i~~lk~~gI~~VV~L~~~~-yd~~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~-----~~~~~~VlVHC~ 285 (328)
..+|++..+.+.+.+ ..||++++.. ++...+ ++--.++...+.++-..+ ...+.+|+++|.
T Consensus 113 ~i~p~e~~~ll~~~~-~vvIDVRn~~E~~~Ghi------------~gAinip~~~f~e~~~~~~~~~~~~k~k~Iv~yCt 179 (247)
T PRK01415 113 YIEPKDWDEFITKQD-VIVIDTRNDYEVEVGTF------------KSAINPNTKTFKQFPAWVQQNQELLKGKKIAMVCT 179 (247)
T ss_pred ccCHHHHHHHHhCCC-cEEEECCCHHHHhcCCc------------CCCCCCChHHHhhhHHHHhhhhhhcCCCeEEEECC
Confidence 457887666666544 4688998742 222111 111122222333332211 135789999999
Q ss_pred CCCChHHHHHHHHHHHHcCCC
Q psy3113 286 AGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 286 aGlGRTGtliaayLm~~~g~t 306 (328)
+| .|+. .++.+|. ..|++
T Consensus 180 gG-iRs~-kAa~~L~-~~Gf~ 197 (247)
T PRK01415 180 GG-IRCE-KSTSLLK-SIGYD 197 (247)
T ss_pred CC-hHHH-HHHHHHH-HcCCC
Confidence 98 7874 4455554 47886
No 84
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=72.79 E-value=10 Score=30.42 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=29.0
Q ss_pred CCCChHHHHHHHHHH-HcCCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 259 TAPPNDILCEFIKVC-EKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 259 ~~P~~~~i~~fi~~~-~~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
..++.+.+.+++... ...+.+|+|+|..| |+....++ +++...|++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~vv~~c~~g-~~~a~~~~-~~l~~~G~~ 106 (122)
T cd01448 60 MLPSPEEFAELLGSLGISNDDTVVVYDDGG-GFFAARAW-WTLRYFGHE 106 (122)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEECCCC-CccHHHHH-HHHHHcCCC
Confidence 445555666665543 23578999999998 55555544 444556765
No 85
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=72.43 E-value=10 Score=36.75 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=42.9
Q ss_pred CCCChHHhHHHHHhCCCcEEEEcCCCC-CCccccccCCcEEEEeecCCCCCCChHHHHHHHHHHH-----cCCCcEEEEc
Q psy3113 211 CYHPPEFYLDYFLQNGVQLVVRLNQKN-YDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCE-----KYKGPIAVHC 284 (328)
Q Consensus 211 ~~~~pe~~i~~lk~~gI~~VV~L~~~~-yd~~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~~-----~~~~~VlVHC 284 (328)
...+|++..+.+.+.+ ..||++++.. |....+ .| -+++|+ ..+.++...++ .++.+|+|+|
T Consensus 112 ~~is~~el~~~l~~~~-~vlIDVR~~~E~~~GhI--~G--Ai~ip~--------~~~~~~~~~l~~~~~~~kdk~IvvyC 178 (314)
T PRK00142 112 TYLKPKEVNELLDDPD-VVFIDMRNDYEYEIGHF--EN--AIEPDI--------ETFREFPPWVEENLDPLKDKKVVMYC 178 (314)
T ss_pred cccCHHHHHHHhcCCC-eEEEECCCHHHHhcCcC--CC--CEeCCH--------HHhhhhHHHHHHhcCCCCcCeEEEEC
Confidence 3456777666665544 4688988642 222111 11 122222 22233322221 2578999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCC
Q psy3113 285 KAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 285 ~aGlGRTGtliaayLm~~~g~t 306 (328)
.+| .|+. .++.+|. ..|++
T Consensus 179 ~~G-~Rs~-~aa~~L~-~~Gf~ 197 (314)
T PRK00142 179 TGG-IRCE-KASAWMK-HEGFK 197 (314)
T ss_pred CCC-cHHH-HHHHHHH-HcCCC
Confidence 998 7875 3445554 47875
No 86
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=71.40 E-value=22 Score=27.96 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=42.1
Q ss_pred CChHHhHHHHHhCCCcEEEEcCCCCCCccccccCCcE-EEEeecCCCCCCChHHHHHHHHHHHcCCCcEEEEcCCCCChH
Q psy3113 213 HPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLD-HVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRT 291 (328)
Q Consensus 213 ~~pe~~i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI~-~~~l~~~D~~~P~~~~i~~fi~~~~~~~~~VlVHC~aGlGRT 291 (328)
.+|++..+.+.+.+ ..||++++.. .+....|. -+++| ...+..++..+ ..+.+++|+|..|. |+
T Consensus 7 is~~el~~~l~~~~-~~ivDvR~~~----e~~~ghi~gA~~ip--------~~~l~~~~~~~-~~~~~ivv~c~~g~-~s 71 (108)
T PRK00162 7 INVEQAHQKLQEGG-AVLVDIRDPQ----SFAMGHAPGAFHLT--------NDSLGAFMRQA-DFDTPVMVMCYHGN-SS 71 (108)
T ss_pred cCHHHHHHHHHcCC-CEEEEcCCHH----HHhcCCCCCCeECC--------HHHHHHHHHhc-CCCCCEEEEeCCCC-CH
Confidence 45676666665555 4689998642 22111110 11111 23445555443 35789999999884 55
Q ss_pred HHHHHHHHHHHcCCC
Q psy3113 292 GCLIGAYMIKHVRRR 306 (328)
Q Consensus 292 GtliaayLm~~~g~t 306 (328)
. . ++..++..|++
T Consensus 72 ~-~-a~~~L~~~G~~ 84 (108)
T PRK00162 72 Q-G-AAQYLLQQGFD 84 (108)
T ss_pred H-H-HHHHHHHCCch
Confidence 3 2 33355567776
No 87
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=71.11 E-value=27 Score=28.60 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=21.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 276 YKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 276 ~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
++.+|+|.|..|-.||. .++++++..|++
T Consensus 85 ~~~~vvvyC~~~G~rs~--~a~~~L~~~G~~ 113 (128)
T cd01520 85 RDPKLLIYCARGGMRSQ--SLAWLLESLGID 113 (128)
T ss_pred CCCeEEEEeCCCCccHH--HHHHHHHHcCCc
Confidence 57899999985546775 444777777874
No 88
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=70.51 E-value=18 Score=28.10 Aligned_cols=78 Identities=12% Similarity=0.196 Sum_probs=40.2
Q ss_pred ChHHhHHHHHhC-CCcEEEEcCCCC-CCccccccCCcEEEEeecCCCCCCChHHHHHHHHHHHc--CCCcEEEEcCCCCC
Q psy3113 214 PPEFYLDYFLQN-GVQLVVRLNQKN-YDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEK--YKGPIAVHCKAGLG 289 (328)
Q Consensus 214 ~pe~~i~~lk~~-gI~~VV~L~~~~-yd~~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~~~--~~~~VlVHC~aGlG 289 (328)
++++..+.+.+. +-..||+++... |+...+ .|- +.+| ...+..+++.+.. .+.+|+|.|..| .
T Consensus 3 ~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI--~ga--~~ip--------~~~~~~~~~~~~~~~~~~~vv~~c~~g-~ 69 (101)
T cd01528 3 SVAELAEWLADEREEPVLIDVREPEELEIAFL--PGF--LHLP--------MSEIPERSKELDSDNPDKDIVVLCHHG-G 69 (101)
T ss_pred CHHHHHHHHhcCCCCCEEEECCCHHHHhcCcC--CCC--EecC--------HHHHHHHHHHhcccCCCCeEEEEeCCC-c
Confidence 455555666553 234689998632 222111 111 1122 1233334444433 478999999998 6
Q ss_pred hHHHHHHHHHHHHcCCC
Q psy3113 290 RTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 290 RTGtliaayLm~~~g~t 306 (328)
|+. .++.+| ...|++
T Consensus 70 rs~-~~~~~l-~~~G~~ 84 (101)
T cd01528 70 RSM-QVAQWL-LRQGFE 84 (101)
T ss_pred hHH-HHHHHH-HHcCCc
Confidence 764 334444 447775
No 89
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=66.61 E-value=25 Score=36.34 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=48.3
Q ss_pred eeeccccCCCCC-CCchhHHHHHHHHHHHhcCC------CCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcC-CCHHHH
Q psy3113 52 HVYLNFFGDFGP-ICLSTLYRYCDKLKAKLNSS------TLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLK-FTPNEI 123 (328)
Q Consensus 52 ~~y~~f~~dfgp-l~l~~~~~~~~~l~~~l~~~------~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~-~~~~~a 123 (328)
|.|.+ .-|+|- -+-..+-.|.+.+++.=... ..+..+||||+-+.-| +.+++++++|-.-+ .+.+++
T Consensus 426 FHyTn-WPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGR----TGTFIAi~llk~~~~~sle~I 500 (535)
T PRK15375 426 LHVKN-WPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGR----TGTMAAALVLKDNPHSNLEQV 500 (535)
T ss_pred EEeCC-CCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCch----HHHHHHHHHHhccccCCHHHH
Confidence 34544 468884 45566777777776542111 1234579999999999 99999998754322 477777
Q ss_pred HHHHHhc
Q psy3113 124 YKALQAN 130 (328)
Q Consensus 124 ~~~~~~~ 130 (328)
+.-+...
T Consensus 501 V~dlR~q 507 (535)
T PRK15375 501 RADFRNS 507 (535)
T ss_pred HHHHHhc
Confidence 7776643
No 90
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=65.93 E-value=28 Score=28.12 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=20.1
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHHcCC
Q psy3113 275 KYKGPIAVHCKAGLGRTGCLIGAYMIKHVRR 305 (328)
Q Consensus 275 ~~~~~VlVHC~aGlGRTGtliaayLm~~~g~ 305 (328)
..+.+|+|+|..| .|+. .++..+...|+
T Consensus 70 ~~~~~ivv~C~~G-~rs~--~aa~~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRG-NDSQ--TAVRKLKELGL 97 (122)
T ss_pred CCCCcEEEECCCC-CcHH--HHHHHHHHcCC
Confidence 4578999999999 5875 33345566788
No 91
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=62.68 E-value=39 Score=25.51 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 266 LCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 266 i~~fi~~~~~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
+.+.+..+ ..+.+|+|+|..| .|+. .++..++..|++
T Consensus 46 ~~~~~~~~-~~~~~ivv~c~~g-~~s~--~a~~~l~~~G~~ 82 (96)
T cd01444 46 LDDWLGDL-DRDRPVVVYCYHG-NSSA--QLAQALREAGFT 82 (96)
T ss_pred HHHHHhhc-CCCCCEEEEeCCC-ChHH--HHHHHHHHcCCc
Confidence 34444333 3578999999966 4543 344555556664
No 92
>KOG1530|consensus
Probab=60.74 E-value=37 Score=28.90 Aligned_cols=78 Identities=14% Similarity=0.270 Sum_probs=42.6
Q ss_pred hHHHHHhCCCcEEEEcCCCCCCccccccCCc-EEEEeec----CCCCCCChHHHHHHHHHH----HcCCCcEEEEcCCCC
Q psy3113 218 YLDYFLQNGVQLVVRLNQKNYDERKFTEAGL-DHVDFYF----PDGTAPPNDILCEFIKVC----EKYKGPIAVHCKAGL 288 (328)
Q Consensus 218 ~i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI-~~~~l~~----~D~~~P~~~~i~~fi~~~----~~~~~~VlVHC~aGl 288 (328)
....|-+++-...|+++++ ++|.+-++ .-+.+|. +++..++. +|.+.+ ...+..|+|+|..|
T Consensus 29 qvk~L~~~~~~~llDVRep----eEfk~gh~~~siNiPy~~~~~~~~l~~~----eF~kqvg~~kp~~d~eiIf~C~SG- 99 (136)
T KOG1530|consen 29 QVKNLLQHPDVVLLDVREP----EEFKQGHIPASINIPYMSRPGAGALKNP----EFLKQVGSSKPPHDKEIIFGCASG- 99 (136)
T ss_pred HHHHHhcCCCEEEEeecCH----HHhhccCCcceEeccccccccccccCCH----HHHHHhcccCCCCCCcEEEEeccC-
Confidence 3555666676777888864 23333332 1233333 12333333 344443 33567999999999
Q ss_pred ChHHHHHHHHHHHHcCCC
Q psy3113 289 GRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 289 GRTGtliaayLm~~~g~t 306 (328)
.|+.+ |.-.....|++
T Consensus 100 ~Rs~~--A~~~l~s~Gyk 115 (136)
T KOG1530|consen 100 VRSLK--ATKILVSAGYK 115 (136)
T ss_pred cchhH--HHHHHHHcCcc
Confidence 78754 33333446665
No 93
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=60.64 E-value=27 Score=27.80 Aligned_cols=19 Identities=16% Similarity=0.050 Sum_probs=14.0
Q ss_pred CCCcEEEEcCCCCChHHHH
Q psy3113 276 YKGPIAVHCKAGLGRTGCL 294 (328)
Q Consensus 276 ~~~~VlVHC~aGlGRTGtl 294 (328)
...+|+|||..|-.|+...
T Consensus 65 ~~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCCEEEEECCCCCcccHHH
Confidence 3568999999865776543
No 94
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=60.45 E-value=23 Score=34.58 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=53.3
Q ss_pred ChHHHHHHHhhcCCCcceeec-------CcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCCCCcccc---
Q psy3113 174 DVDEMEKYERIQFGDISWIVP-------NKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKF--- 243 (328)
Q Consensus 174 d~~ey~~~e~~~~gd~nwIvP-------~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~yd~~~~--- 243 (328)
+..-||.||+.+ .++.|..+ .-++-+++|-+ ....+.|.+.|+...-=-+.+.-+...+
T Consensus 75 ~~slyel~e~~~-~p~e~~~~Lke~a~~~Gi~~~SSPfd----------~~svd~l~~~~~~ayKIaS~E~~~~plik~i 143 (347)
T COG2089 75 KVSLYELYEEAE-TPLEWHAQLKEYARKRGIIFFSSPFD----------LTAVDLLESLNPPAYKIASGEINDLPLIKYI 143 (347)
T ss_pred cccHHHHHHHhc-CCHHHHHHHHHHHHHcCeEEEecCCC----------HHHHHHHHhcCCCeEEecCccccChHHHHHH
Confidence 445566666665 34444422 22666788866 1246677776665442222221111111
Q ss_pred ccCCcEEEEee-cCCCCCCChHHHHHHHHHHHcCCCc--EEEEcCCCC
Q psy3113 244 TEAGLDHVDFY-FPDGTAPPNDILCEFIKVCEKYKGP--IAVHCKAGL 288 (328)
Q Consensus 244 ~~~gI~~~~l~-~~D~~~P~~~~i~~fi~~~~~~~~~--VlVHC~aGl 288 (328)
.+.|- | ....+..+.+.+.+.++.+++.+.+ ++.||..+-
T Consensus 144 A~~~k-----PiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~Y 186 (347)
T COG2089 144 AKKGK-----PIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAY 186 (347)
T ss_pred HhcCC-----CEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCC
Confidence 11110 1 1134555677888899999887777 999998643
No 95
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=58.08 E-value=20 Score=35.52 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=41.4
Q ss_pred CChHHhHHHHHhCCCcEEEEcCCCC-CCccccccCCcEEEEeecCCCCCCChHHHHHHHHHHHc-CCCcEEEEcCCCCCh
Q psy3113 213 HPPEFYLDYFLQNGVQLVVRLNQKN-YDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEK-YKGPIAVHCKAGLGR 290 (328)
Q Consensus 213 ~~pe~~i~~lk~~gI~~VV~L~~~~-yd~~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~~~-~~~~VlVHC~aGlGR 290 (328)
.++++..+.+.+.+. .||+++++. |....+.. +..-+++|..+.... ..+++.... .+.+|+|||..| .|
T Consensus 273 ~~~~el~~~l~~~~~-~lIDVR~~~E~~~ghI~~-~~gAinIPl~~l~~~-----~~~~~~l~~~~~~~Ivv~C~sG-~R 344 (370)
T PRK05600 273 TDTTSLIDATLNGSA-TLLDVREPHEVLLKDLPE-GGASLKLPLSAITDD-----ADILHALSPIDGDNVVVYCASG-IR 344 (370)
T ss_pred cCHHHHHHHHhcCCe-EEEECCCHHHhhhccCCC-CCccEeCcHHHhhcc-----hhhhhhccccCCCcEEEECCCC-hh
Confidence 356665666655443 688998743 32221110 011344443222110 011222221 334999999999 78
Q ss_pred HHHHHHHHHHHHcCCC
Q psy3113 291 TGCLIGAYMIKHVRRR 306 (328)
Q Consensus 291 TGtliaayLm~~~g~t 306 (328)
|.. ++..| +..|++
T Consensus 345 S~~-Aa~~L-~~~G~~ 358 (370)
T PRK05600 345 SAD-FIEKY-SHLGHE 358 (370)
T ss_pred HHH-HHHHH-HHcCCC
Confidence 763 44444 446764
No 96
>PLN02727 NAD kinase
Probab=53.89 E-value=32 Score=38.18 Aligned_cols=62 Identities=3% Similarity=0.022 Sum_probs=47.7
Q ss_pred eeeccccCCCCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHH
Q psy3113 52 HVYLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEI 123 (328)
Q Consensus 52 ~~y~~f~~dfgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a 123 (328)
+++-|+ .+.++++-.++-+|...+++-+.. -.++||-++.-+ |.++++||++-..+..-+++
T Consensus 313 yVhIPV-s~~~apt~EqVe~fa~~l~~slpk-----PVLvHCKSGarR----AGamvA~yl~~~~~~~~~~~ 374 (986)
T PLN02727 313 VVKIPV-EVRTAPSAEQVEKFASLVSDSSKK-----PIYLHSKEGVWR----TSAMVSRWKQYMTRSAERLL 374 (986)
T ss_pred EEEeec-CCCCCCCHHHHHHHHHHHHhhcCC-----CEEEECCCCCch----HHHHHHHHHHHHcccchhhh
Confidence 455554 478899999999999999764443 477778788878 99999999998888654443
No 97
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=53.25 E-value=22 Score=27.27 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=18.9
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 276 YKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 276 ~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
++.+|+|.|..|. |+...-++..+...|++
T Consensus 49 ~~~~ivl~c~~G~-~~~s~~aa~~L~~~G~~ 78 (92)
T cd01532 49 RDTPIVVYGEGGG-EDLAPRAARRLSELGYT 78 (92)
T ss_pred CCCeEEEEeCCCC-chHHHHHHHHHHHcCcc
Confidence 4779999999984 43223334444556664
No 98
>PRK05320 rhodanese superfamily protein; Provisional
Probab=53.15 E-value=44 Score=31.32 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=20.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 276 YKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 276 ~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
.+.+|+++|..| .|+. .++.+|. ..|++
T Consensus 174 kdk~IvvyC~~G-~Rs~-~Aa~~L~-~~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGG-IRCE-KAAIHMQ-EVGID 201 (257)
T ss_pred CCCeEEEECCCC-HHHH-HHHHHHH-HcCCc
Confidence 578999999999 7775 3455554 47775
No 99
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=49.64 E-value=23 Score=29.02 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=30.1
Q ss_pred hHHhHHHHHhCCCcEEEEcCCCC------CCcc----ccccCCcEEEEeec
Q psy3113 215 PEFYLDYFLQNGVQLVVRLNQKN------YDER----KFTEAGLDHVDFYF 255 (328)
Q Consensus 215 pe~~i~~lk~~gI~~VV~L~~~~------yd~~----~~~~~gI~~~~l~~ 255 (328)
.+.+++.+++.||+.||+++.-. +.++ .+...||.|.+++-
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~ 52 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPE 52 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechh
Confidence 35678899999999999977432 3333 23567999999865
No 100
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=47.76 E-value=1.6e+02 Score=26.28 Aligned_cols=24 Identities=8% Similarity=0.432 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCCcEEEEcCCC
Q psy3113 264 DILCEFIKVCEKYKGPIAVHCKAG 287 (328)
Q Consensus 264 ~~i~~fi~~~~~~~~~VlVHC~aG 287 (328)
..+..+++.+.+.+-||.|||..+
T Consensus 108 ~~~~~~~~~a~e~~~pv~iH~~~~ 131 (251)
T cd01310 108 EVFRAQLELAKELNLPVVIHSRDA 131 (251)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeCc
Confidence 457778888888899999999755
No 101
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=46.53 E-value=43 Score=25.59 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=19.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 276 YKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 276 ~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
.+.+|+|+|..| .|+. .++.. ++..|++
T Consensus 55 ~~~~iv~~c~~G-~rs~-~aa~~-L~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDG-VRAD-MTASW-LAQMGWE 82 (95)
T ss_pred CCCeEEEECCCC-ChHH-HHHHH-HHHcCCE
Confidence 467899999998 5764 33344 4667775
No 102
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=45.31 E-value=58 Score=31.19 Aligned_cols=57 Identities=9% Similarity=0.022 Sum_probs=38.3
Q ss_pred eeeccccCCCC-CCCchhHHHHHHHHHHHhc------CCCCCCcEEEEEeCCCCcchhhHHHHHHHHHH
Q psy3113 52 HVYLNFFGDFG-PICLSTLYRYCDKLKAKLN------SSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAI 113 (328)
Q Consensus 52 ~~y~~f~~dfg-pl~l~~~~~~~~~l~~~l~------~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~v 113 (328)
+.|... -|+| |-+-..+..|...+++..+ .....+-.||||+.+..| +.++++.-..
T Consensus 181 fqyt~W-Pd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGR----TGtFcaiDi~ 244 (298)
T PHA02740 181 FQYTAW-PADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISS----SAVFCVFDIC 244 (298)
T ss_pred EeecCC-CCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCch----hHHHHHHHHH
Confidence 456665 4788 6788888888888775431 112245689999999999 6665554433
No 103
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=44.95 E-value=42 Score=26.65 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=19.8
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 275 KYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 275 ~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
..+.+|+|+|..| .||... +..++..|++
T Consensus 56 ~~~~~vvlyC~~G-~rS~~a--a~~L~~~G~~ 84 (101)
T TIGR02981 56 DKNDTVKLYCNAG-RQSGMA--KDILLDMGYT 84 (101)
T ss_pred CCCCeEEEEeCCC-HHHHHH--HHHHHHcCCC
Confidence 3567899999998 577543 3445557775
No 104
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=44.06 E-value=1.9e+02 Score=27.33 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=40.0
Q ss_pred cCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCCC----Cc-cccccCCcEEEEeecC
Q psy3113 194 PNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNY----DE-RKFTEAGLDHVDFYFP 256 (328)
Q Consensus 194 P~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~y----d~-~~~~~~gI~~~~l~~~ 256 (328)
+.++|+++||-. -+....++++++|..||.=++..- .+ +...+.||.++-+--|
T Consensus 173 ~~~Iia~~GPfs---------~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 173 PARIIAMRGPFS---------EEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred hhhEEEecCCcC---------hHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 467999999976 455789999999999999886432 21 2235678888887555
No 105
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=43.57 E-value=35 Score=32.50 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=33.5
Q ss_pred eeeccccCCCCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCc
Q psy3113 52 HVYLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPK 99 (328)
Q Consensus 52 ~~y~~f~~dfgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~ 99 (328)
|.|.+. .||+-.++ -.-+..+|.+..+|..++-.||||+.+..|
T Consensus 188 f~y~nW-~D~~~p~i---~sl~~~~~sl~~sp~~t~piiVHCSAGvGR 231 (302)
T COG5599 188 FQYINW-VDFNVPDI---RSLTEVIHSLNDSPVRTGPIIVHCSAGVGR 231 (302)
T ss_pred EEecCc-cccCCcCH---HHHHHHHHHhhcCcCCCCCEEEEeccCCCC
Confidence 556666 48876654 445666777777877789999999999999
No 106
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=41.66 E-value=35 Score=26.11 Aligned_cols=29 Identities=3% Similarity=0.001 Sum_probs=19.7
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 275 KYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 275 ~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
..+.+|+|+|..| +|+.. ++..| +..|++
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCCC
Confidence 3578999999877 67754 33444 557765
No 107
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=41.02 E-value=30 Score=26.46 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=15.5
Q ss_pred cEEEEcCCCCChHHHHHHHHH
Q psy3113 279 PIAVHCKAGLGRTGCLIGAYM 299 (328)
Q Consensus 279 ~VlVHC~aGlGRTGtliaayL 299 (328)
.|+|.|.+|+| |+++++.=+
T Consensus 2 kilvvCg~G~g-tS~ml~~ki 21 (87)
T cd05567 2 KIVFACDAGMG-SSAMGASVL 21 (87)
T ss_pred EEEEECCCCcc-HHHHHHHHH
Confidence 58999999999 556666544
No 108
>PRK09875 putative hydrolase; Provisional
Probab=40.68 E-value=1.7e+02 Score=27.99 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=22.0
Q ss_pred HHHHHcCCCcEEEEcCCCCChHHHHHHHHHHHHcCCCHH
Q psy3113 270 IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRT 308 (328)
Q Consensus 270 i~~~~~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t~~ 308 (328)
.+.....+.||.+|+.. ++.|+-. +-++...|.+++
T Consensus 145 a~a~~~TG~pi~~Ht~~--~~~g~e~-l~il~e~Gvd~~ 180 (292)
T PRK09875 145 ALAHNQTGRPISTHTSF--STMGLEQ-LALLQAHGVDLS 180 (292)
T ss_pred HHHHHHHCCcEEEcCCC--ccchHHH-HHHHHHcCcCcc
Confidence 33444578999999765 4455544 344556677543
No 109
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=40.65 E-value=1.6e+02 Score=23.08 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=12.8
Q ss_pred CCCcEEEEcCCCCChHHH
Q psy3113 276 YKGPIAVHCKAGLGRTGC 293 (328)
Q Consensus 276 ~~~~VlVHC~aGlGRTGt 293 (328)
.+.+|+|||..+-.|+..
T Consensus 61 ~~~~iv~yC~~~~~r~~~ 78 (113)
T cd01531 61 KKDTVVFHCALSQVRGPS 78 (113)
T ss_pred CCCeEEEEeecCCcchHH
Confidence 457999999844467654
No 110
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=37.70 E-value=90 Score=24.55 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=27.0
Q ss_pred CCChHHHHHHHHHHH-cCCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 260 APPNDILCEFIKVCE-KYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 260 ~P~~~~i~~fi~~~~-~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
.|..+.+.+++.... .++.+|+|+|..| .|+.. +++.+...|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~iv~yc~~g-~~s~~--~~~~l~~~G~~ 104 (118)
T cd01449 60 FKSPEELRALFAALGITPDKPVIVYCGSG-VTACV--LLLALELLGYK 104 (118)
T ss_pred cCCHHHHHHHHHHcCCCCCCCEEEECCcH-HHHHH--HHHHHHHcCCC
Confidence 344445555555432 3577999999987 46543 45556667764
No 111
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=37.68 E-value=60 Score=25.98 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=18.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 276 YKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 276 ~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
.+.+|+|+|..| .||... +..| ...|++
T Consensus 59 ~~~~IVlyC~~G-~rS~~a-a~~L-~~~G~~ 86 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQA-KEIL-SEMGYT 86 (104)
T ss_pred CCCeEEEEeCCC-hHHHHH-HHHH-HHcCCC
Confidence 457899999988 676543 3333 446665
No 112
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=36.65 E-value=42 Score=25.62 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=19.7
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 275 KYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 275 ~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
..+.+|+|+|..| .|+. .++.++...|++
T Consensus 59 ~~~~~ivv~c~~g-~~s~--~~~~~l~~~G~~ 87 (103)
T cd01447 59 AEDKPFVFYCASG-WRSA--LAGKTLQDMGLK 87 (103)
T ss_pred CCCCeEEEEcCCC-CcHH--HHHHHHHHcChH
Confidence 4578999999887 5663 334555666654
No 113
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=36.52 E-value=48 Score=25.55 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 277 KGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 277 ~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
+.+|+|+|..|. |++.+ +..+...|++
T Consensus 65 ~~~vv~~c~~g~-~s~~~--a~~L~~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF--AAFLVKCGVP 91 (105)
T ss_pred CCeEEEEeCCCc-cHHHH--HHHHHHcCCC
Confidence 679999999984 76543 3345557765
No 114
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=36.14 E-value=93 Score=30.03 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=18.5
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHHcCCCHH
Q psy3113 275 KYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRT 308 (328)
Q Consensus 275 ~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t~~ 308 (328)
+.+-||.+||..|.+ .|.=++-+ +...|..++
T Consensus 153 ~TG~pI~~H~~~g~~-~~~e~~~i-l~e~Gv~~~ 184 (308)
T PF02126_consen 153 ETGAPISTHTGRGTR-MGLEQLDI-LEEEGVDPS 184 (308)
T ss_dssp HHT-EEEEEESTTGT-CHHHHHHH-HHHTT--GG
T ss_pred HhCCeEEEcCCCCCc-CHHHHHHH-HHHcCCChh
Confidence 368899999987743 45444444 445777654
No 115
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=34.97 E-value=76 Score=27.85 Aligned_cols=81 Identities=10% Similarity=0.046 Sum_probs=56.6
Q ss_pred CCCCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCcCC
Q psy3113 59 GDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAF 138 (328)
Q Consensus 59 ~dfgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~~~~~~~~pf 138 (328)
--+|+-+..-++-|+...-+ ..--+|||-.+.+|. +|.-+++-+.|.-.+.++|..+.|+.. .|.-.|.
T Consensus 73 ~ap~e~Hv~~i~DF~~~wp~-------~apllIHC~aGISRS---tA~A~i~a~ala~~~de~ela~~Lra~-sp~atPN 141 (172)
T COG5350 73 IAPGEAHVRAIIDFADEWPR-------FAPLLIHCYAGISRS---TAAALIAALALAPDMDETELAERLRAL-SPYATPN 141 (172)
T ss_pred cCCCHHHHHHHHHHHhcCcc-------ccceeeeeccccccc---hHHHHHHHHhhccccChHHHHHHHHhc-CcccCCC
Confidence 45788888888888876543 456789999998885 555556668899999999999999854 2222242
Q ss_pred CCCCCCCCCccccHHHHHHH
Q psy3113 139 QDASDENSKYTLELLECFNA 158 (328)
Q Consensus 139 rdas~~~~~~~lti~d~~~g 158 (328)
.--+.|-|..-|
T Consensus 142 --------~RliaI~d~~l~ 153 (172)
T COG5350 142 --------PRLIAIADAALG 153 (172)
T ss_pred --------hhHHHHHHHHHh
Confidence 333666666443
No 116
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=34.49 E-value=2.5e+02 Score=26.99 Aligned_cols=57 Identities=9% Similarity=0.178 Sum_probs=35.1
Q ss_pred eeeccccCCCC-CCCchhHHHHHHHHHHHhcC------C--CCCCcEEEEEeCCCCcchhhHHHHHHHHHH
Q psy3113 52 HVYLNFFGDFG-PICLSTLYRYCDKLKAKLNS------S--TLKHKVIIHYTGNNPKKRLNAAFLIGCYAI 113 (328)
Q Consensus 52 ~~y~~f~~dfg-pl~l~~~~~~~~~l~~~l~~------~--~~~~~~iv~~~~~~~~~~~naa~L~~~y~v 113 (328)
+.|...- |+| |-+...+-.|...+++.-+. + ...+-.||||+.+..| +++++++-.+
T Consensus 187 ~~y~~Wp-d~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGR----tGtfcaidi~ 252 (312)
T PHA02747 187 FQCSEWF-EDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGK----TGIFCAVDIC 252 (312)
T ss_pred EEECCCC-CCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcc----hhHHHHHHHH
Confidence 3455543 555 66777777777766543221 1 1125688999999999 6666655433
No 117
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=34.20 E-value=1.3e+02 Score=27.96 Aligned_cols=72 Identities=21% Similarity=0.361 Sum_probs=46.4
Q ss_pred cCcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCCCC-c---cccccCCcEEEEeecCCCC--CCChHHHH
Q psy3113 194 PNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYD-E---RKFTEAGLDHVDFYFPDGT--APPNDILC 267 (328)
Q Consensus 194 P~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~yd-~---~~~~~~gI~~~~l~~~D~~--~P~~~~i~ 267 (328)
|..++++.+|-+ -+....+++++|++.||.=++.... . +.....||..+-+.=|... .+....+.
T Consensus 171 ~~~iia~~GPfs---------~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~ 241 (249)
T PF02571_consen 171 PKNIIAMQGPFS---------KELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEPYGDPVVETIE 241 (249)
T ss_pred hhhEEEEeCCCC---------HHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHH
Confidence 456888888866 4567899999999999988765431 1 2235678888877554333 23224455
Q ss_pred HHHHHHH
Q psy3113 268 EFIKVCE 274 (328)
Q Consensus 268 ~fi~~~~ 274 (328)
++++.++
T Consensus 242 e~l~~l~ 248 (249)
T PF02571_consen 242 ELLDWLE 248 (249)
T ss_pred HHHHHHh
Confidence 5555443
No 118
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=32.34 E-value=1.7e+02 Score=22.87 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=19.4
Q ss_pred CCCcEEEEcCCCCC-hHHHHHHHHHHHHcCCC
Q psy3113 276 YKGPIAVHCKAGLG-RTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 276 ~~~~VlVHC~aGlG-RTGtliaayLm~~~g~t 306 (328)
.+.+|+|.|..|.. |+. .++..+...|+.
T Consensus 63 ~~~~vvvyc~~g~~~~s~--~~a~~l~~~G~~ 92 (110)
T cd01521 63 KEKLFVVYCDGPGCNGAT--KAALKLAELGFP 92 (110)
T ss_pred CCCeEEEEECCCCCchHH--HHHHHHHHcCCe
Confidence 57899999998853 443 334555567764
No 119
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=32.13 E-value=1.4e+02 Score=25.40 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHH
Q psy3113 72 YCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYK 125 (328)
Q Consensus 72 ~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~ 125 (328)
|...+..++..+ +-.++||+.+..| +-++ +|-++..+|.+.++..+
T Consensus 113 ~~~~~~~l~~~~---~p~l~HC~aGKDR----TG~~-~alll~~lGV~~~~I~~ 158 (164)
T PF13350_consen 113 YRKIFELLADAP---GPVLFHCTAGKDR----TGVV-AALLLSLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHH-TT-----EEEE-SSSSSH----HHHH-HHHHHHHTT--HHHHHH
T ss_pred HHHHHHHhccCC---CcEEEECCCCCcc----HHHH-HHHHHHHcCCCHHHHHH
Confidence 333444444433 5889999999988 5543 34456778999888754
No 120
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=31.72 E-value=1.2e+02 Score=29.32 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=51.4
Q ss_pred HHHHHhCCCc-EEEEcCC-CCCCcccccc-CCcEEEEeecCCCCCCChHHHHHHHHHHHcCCCcEEEEcC---CCCChHH
Q psy3113 219 LDYFLQNGVQ-LVVRLNQ-KNYDERKFTE-AGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCK---AGLGRTG 292 (328)
Q Consensus 219 i~~lk~~gI~-~VV~L~~-~~yd~~~~~~-~gI~~~~l~~~D~~~P~~~~i~~fi~~~~~~~~~VlVHC~---aGlGRTG 292 (328)
-+.|++.||. .|||+.. +..|.+.+.+ ..-.-.-+...++++-. -+-..+.++-..++|+-++=- ...||||
T Consensus 211 A~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~t~~IvT~EeHsi~G--GlGsaVAEvlse~~p~~~~riGvp~~fg~sg 288 (312)
T COG3958 211 AEILKKEGISAAVINMFTIKPIDEQAILKAARETGRIVTAEEHSIIG--GLGSAVAEVLSENGPTPMRRIGVPDTFGRSG 288 (312)
T ss_pred HHHHHhcCCCEEEEecCccCCCCHHHHHHHHhhcCcEEEEecceeec--chhHHHHHHHHhcCCcceEEecCCchhcccc
Confidence 5788899998 7888874 3333332211 10000111122222221 122223333334555555522 4458999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Q psy3113 293 CLIGAYMIKHVRRRRTVLTKRNQ 315 (328)
Q Consensus 293 tliaayLm~~~g~t~~eAi~~v~ 315 (328)
.. .+|.+++|++++...+.++
T Consensus 289 ~~--~~Ll~~ygl~~~~I~~~v~ 309 (312)
T COG3958 289 KA--DELLDYYGLDPESIAARVL 309 (312)
T ss_pred ch--HHHHHHhCCCHHHHHHHHH
Confidence 76 8999999999999888774
No 121
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=31.56 E-value=95 Score=25.25 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=21.6
Q ss_pred eeeccccCCCCCCCchhHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCc
Q psy3113 52 HVYLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPK 99 (328)
Q Consensus 52 ~~y~~f~~dfgpl~l~~~~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~ 99 (328)
++|-|. ++|.++..++-.|...|+.+ .+++++||.++ .|
T Consensus 60 y~~iPv--~~~~~~~~~v~~f~~~l~~~------~~Pvl~hC~sG-~R 98 (110)
T PF04273_consen 60 YVHIPV--DGGAITEEDVEAFADALESL------PKPVLAHCRSG-TR 98 (110)
T ss_dssp EEE------TTT--HHHHHHHHHHHHTT------TTSEEEE-SCS-HH
T ss_pred EEEeec--CCCCCCHHHHHHHHHHHHhC------CCCEEEECCCC-hh
Confidence 566777 47889999999998777652 23555555555 45
No 122
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=31.52 E-value=1.6e+02 Score=31.24 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=47.9
Q ss_pred ChHHhHHHHHhCCCcEEEEcCCC-CCCccccccCCcEEEEeecC---------CCCCCChHHHHHHHHHHH-cCCCcEEE
Q psy3113 214 PPEFYLDYFLQNGVQLVVRLNQK-NYDERKFTEAGLDHVDFYFP---------DGTAPPNDILCEFIKVCE-KYKGPIAV 282 (328)
Q Consensus 214 ~pe~~i~~lk~~gI~~VV~L~~~-~yd~~~~~~~gI~~~~l~~~---------D~~~P~~~~i~~fi~~~~-~~~~~VlV 282 (328)
+++...+.+.+.++ .||+++.. .|....+ .|- +++++. .+..|+.+.+.+.+..+- ..+.+|+|
T Consensus 12 s~~eL~~~l~~~~v-vIIDvR~~~eY~~GHI--PGA--v~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVv 86 (610)
T PRK09629 12 EPNDLLERLDAPEL-ILVDLTSSARYEAGHI--RGA--RFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVV 86 (610)
T ss_pred cHHHHHHHhcCCCE-EEEECCChHHHHhCCC--CCc--EEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Confidence 45555555655454 48888752 2322111 121 222221 234455666666666543 35789999
Q ss_pred EcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 283 HCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 283 HC~aGlGRTGtliaayLm~~~g~t 306 (328)
.|..|..+++ -++|+++..|.+
T Consensus 87 Yd~~g~~~A~--R~~w~L~~~G~~ 108 (610)
T PRK09629 87 YDDEGGGWAG--RFIWLLDVIGHS 108 (610)
T ss_pred ECCCCCchHH--HHHHHHHHcCCC
Confidence 9998866654 345667777765
No 123
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=30.67 E-value=1.1e+02 Score=30.59 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=35.9
Q ss_pred CCCCCCchhHHHH--HHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy3113 60 DFGPICLSTLYRY--CDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQ 128 (328)
Q Consensus 60 dfgpl~l~~~~~~--~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~ 128 (328)
--|+|+|||+|.| +..+..-++. .++.++|.|+.|.+- .-.+.. -..+|++|++-.....
T Consensus 10 ~Ng~lHlGH~~~~l~ADv~aR~~r~---~G~~v~~~tGtDehG---~~i~~~---A~~~g~~p~~~~~~~~ 71 (391)
T PF09334_consen 10 PNGDLHLGHLYPYLAADVLARYLRL---RGHDVLFVTGTDEHG---SKIETA---AEKQGIDPEEFCDKYS 71 (391)
T ss_dssp TSSS-BHHHHHHHHHHHHHHHHHHH---TT-EEEEEEEEE-SS---HHHHHH---HHHTTS-HHHHHHHHH
T ss_pred CCCCCCCChhHHHHHHHHHHHHHhh---cccceeeEEecchhh---HHHHHH---HHHcCCCHHHHHHHHH
Confidence 4699999999855 3344444432 578899999887663 222222 2478999997655543
No 124
>PF14756 Pdase_C33_assoc: Peptidase_C33-associated domain
Probab=30.21 E-value=65 Score=26.85 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHhcCCCCCcCCCCCCCCCCCccccHHHHHHHHHHHHhcccCCCCCCChHHHHHHHhhcCCCcceeecC
Q psy3113 118 FTPNEIYKALQANNKVPFIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVPN 195 (328)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~pfrdas~~~~~~~lti~d~~~gl~ka~~~g~~~~~~fd~~ey~~~e~~~~gd~nwIvP~ 195 (328)
-||||+-..+.+. +|+| .++.+||..+++|...+-.|. . .|+|-|.||
T Consensus 95 ~tpeeva~kidqY-------lrgA--------~sleEClarlEra~pPsa~dT-s--------------FDWnvVlPG 142 (147)
T PF14756_consen 95 ATPEEVAAKIDQY-------LRGA--------TSLEECLARLERARPPSAADT-S--------------FDWNVVLPG 142 (147)
T ss_pred CCHHHHHHHHHHH-------Hhcc--------ccHHHHHHHHhccCCCccccc-c--------------ccceeeccc
Confidence 4799998888754 5676 578999999999987776663 2 366777776
No 125
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=29.76 E-value=1e+02 Score=32.61 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=29.0
Q ss_pred CCCCChHHHHHHHHHH-HcCCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 258 GTAPPNDILCEFIKVC-EKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 258 ~~~P~~~~i~~fi~~~-~~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
+..++.+.+.+++... -..+.+|+|+|..|. |++. +.++++..|++
T Consensus 203 ~~lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~-rAa~--~~~~L~~lG~~ 249 (610)
T PRK09629 203 RNLRIRQDMPEILRDLGITPDKEVITHCQTHH-RSGF--TYLVAKALGYP 249 (610)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEECCCCh-HHHH--HHHHHHHcCCC
Confidence 3345556666666543 235789999999884 6553 24455667775
No 126
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=29.38 E-value=1.1e+02 Score=29.60 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=47.4
Q ss_pred CChHHhHHHHHhCCCcEEEEcCCCC-----------CCc---cccccCCcEEEEeecCCCCCCChHHHHHHHHHHHcCCC
Q psy3113 213 HPPEFYLDYFLQNGVQLVVRLNQKN-----------YDE---RKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKG 278 (328)
Q Consensus 213 ~~pe~~i~~lk~~gI~~VV~L~~~~-----------yd~---~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~~~~~~ 278 (328)
|+|. .++.|++.||+.|=++.+-. ..+ +.+.+.|+.. -|.++|--..+.+.++...+.+.
T Consensus 41 HN~~-vv~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~v-----iDaTCP~V~k~~~~v~~~~~~Gy 114 (298)
T PRK01045 41 HNRY-VVERLEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEAKERGLTV-----IDATCPLVTKVHKEVARMSREGY 114 (298)
T ss_pred cCHH-HHHHHHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHHHHCCCeE-----EeCCCccchHHHHHHHHHHhCCC
Confidence 5666 59999999999886554311 111 1223445544 46789988888888888877888
Q ss_pred cEEEEcCCC
Q psy3113 279 PIAVHCKAG 287 (328)
Q Consensus 279 ~VlVHC~aG 287 (328)
.|+|+...|
T Consensus 115 ~vvi~G~~~ 123 (298)
T PRK01045 115 EIILIGHKG 123 (298)
T ss_pred EEEEEeCCC
Confidence 899888654
No 127
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=28.72 E-value=2.5e+02 Score=26.15 Aligned_cols=97 Identities=15% Similarity=0.148 Sum_probs=58.3
Q ss_pred ccHHHHHHHHHHHHhcccCCCCCCChHHHHHHHhhcCCCcce----------eecCcEEEeccCCCCCCCCCCCChHHhH
Q psy3113 150 LELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISW----------IVPNKLLAFSGPNTTEQNTCYHPPEFYL 219 (328)
Q Consensus 150 lti~d~~~gl~ka~~~g~~~~~~fd~~ey~~~e~~~~gd~nw----------IvP~~fla~~~P~~~~~g~~~~~pe~~i 219 (328)
-++.++...+.+. ++-++....-++..|.... .+.--+-- +.+..++++.+|-+ -+...
T Consensus 115 ~s~~~a~~~l~~~-~~vllttGsk~l~~f~~~~-~~~r~~~RvLP~~~s~~g~~~~~iiam~gPfs---------~e~n~ 183 (248)
T PRK08057 115 DDIEEAAEALAPF-RRVLLTTGRQPLAHFAAIL-PEHRLLVRVLPPPEVLLGLPRAEIIALRGPFS---------LELER 183 (248)
T ss_pred CCHHHHHHHhhcc-CCEEEecCcchHHHHhhcC-CCCEEEEEECCCchhcCCCChhhEEEeeCCCC---------HHHHH
Confidence 3666666655544 4555666666667775320 00000111 22456778887765 46678
Q ss_pred HHHHhCCCcEEEEcCCCCC--Cc--cccccCCcEEEEeecCC
Q psy3113 220 DYFLQNGVQLVVRLNQKNY--DE--RKFTEAGLDHVDFYFPD 257 (328)
Q Consensus 220 ~~lk~~gI~~VV~L~~~~y--d~--~~~~~~gI~~~~l~~~D 257 (328)
.+++++||+.||.=++..- .. +.....||..+-+.=|.
T Consensus 184 aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~ 225 (248)
T PRK08057 184 ALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPA 225 (248)
T ss_pred HHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCC
Confidence 9999999999998876542 11 22356788888875553
No 128
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=28.60 E-value=16 Score=37.44 Aligned_cols=14 Identities=50% Similarity=0.902 Sum_probs=13.2
Q ss_pred eeeccccCCCCCCC
Q psy3113 52 HVYLNFFGDFGPIC 65 (328)
Q Consensus 52 ~~y~~f~~dfgpl~ 65 (328)
++|.+|-+||||+|
T Consensus 155 iaws~FVrdFGpiN 168 (637)
T COG4646 155 IAWSNFVRDFGPIN 168 (637)
T ss_pred ehHHHHHHhcCCcc
Confidence 57999999999999
No 129
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=28.18 E-value=1.1e+02 Score=23.58 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=10.6
Q ss_pred CCcEEEEEeCCCCc
Q psy3113 86 KHKVIIHYTGNNPK 99 (328)
Q Consensus 86 ~~~~iv~~~~~~~~ 99 (328)
+++.||+||....+
T Consensus 60 ~~~~ivvyC~~G~r 73 (101)
T cd01518 60 KGKKVLMYCTGGIR 73 (101)
T ss_pred CCCEEEEECCCchh
Confidence 67788888876655
No 130
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=27.87 E-value=57 Score=27.24 Aligned_cols=26 Identities=31% Similarity=0.555 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcC----CCcEEEEcCCCCCh
Q psy3113 265 ILCEFIKVCEKY----KGPIAVHCKAGLGR 290 (328)
Q Consensus 265 ~i~~fi~~~~~~----~~~VlVHC~aGlGR 290 (328)
.+....+.+... .+.++|||+..++-
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALGS 109 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--G
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCChH
Confidence 566666666653 68999999987764
No 131
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=27.11 E-value=59 Score=33.46 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCChHHHHHHH
Q psy3113 277 KGPIAVHCKAGLGRTGCLIGA 297 (328)
Q Consensus 277 ~~~VlVHC~aGlGRTGtliaa 297 (328)
+..-+..|++|++|||.+=+.
T Consensus 456 gavP~wNCkSGKDRTGmmD~e 476 (564)
T PRK15378 456 DAVPAWNCKSGKDRTGMMDSE 476 (564)
T ss_pred cceeeeccCCCCccccchHHH
Confidence 455589999999999987554
No 132
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=27.00 E-value=2.2e+02 Score=27.54 Aligned_cols=56 Identities=11% Similarity=0.229 Sum_probs=37.2
Q ss_pred eeccccCCCC-CCCchhHHHHHHHHHHHhc--------CCCCCCcEEEEEeCCCCcchhhHHHHHHHHHH
Q psy3113 53 VYLNFFGDFG-PICLSTLYRYCDKLKAKLN--------SSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAI 113 (328)
Q Consensus 53 ~y~~f~~dfg-pl~l~~~~~~~~~l~~~l~--------~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~v 113 (328)
.|... -|.| |-+...+..|...+++.-+ .+...+-.||||+.+..| |+++++.-.+
T Consensus 206 ~y~~W-pd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGR----TGtfcaid~~ 270 (323)
T PHA02746 206 WFPDW-PDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGR----AGTFCAIDNA 270 (323)
T ss_pred EECCC-CCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCc----chhHHHHHHH
Confidence 34444 4677 7788888888888876421 122235678999999999 6666655443
No 133
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=26.97 E-value=95 Score=23.64 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=18.4
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHHcCCC
Q psy3113 275 KYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 275 ~~~~~VlVHC~aGlGRTGtliaayLm~~~g~t 306 (328)
..+.+|+|+|..| .|+. . ++..+.+.|++
T Consensus 52 ~~~~~iv~~c~~g-~~s~-~-~~~~L~~~g~~ 80 (99)
T cd01527 52 VGANAIIFHCRSG-MRTQ-Q-NAERLAAISAG 80 (99)
T ss_pred CCCCcEEEEeCCC-chHH-H-HHHHHHHcCCc
Confidence 3568999999988 5554 2 33334445664
No 134
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=26.67 E-value=2.1e+02 Score=27.33 Aligned_cols=57 Identities=11% Similarity=0.154 Sum_probs=37.2
Q ss_pred eeccccCCCC-CCCchhHHHHHHHHHHHhcCC---------CCCCcEEEEEeCCCCcchhhHHHHHHHHHHH
Q psy3113 53 VYLNFFGDFG-PICLSTLYRYCDKLKAKLNSS---------TLKHKVIIHYTGNNPKKRLNAAFLIGCYAII 114 (328)
Q Consensus 53 ~y~~f~~dfg-pl~l~~~~~~~~~l~~~l~~~---------~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi 114 (328)
.|... .|.| |.+-..+-.|...+++.-... ...+-.||||+.+..| +++++++..++
T Consensus 187 ~y~~W-pd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGR----TGtF~aid~~i 253 (303)
T PHA02742 187 AYEDW-PHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDR----AGAFCAIDICI 253 (303)
T ss_pred EECCC-CCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCch----hHHHHHHHHHH
Confidence 34443 3666 777888888888887632110 1135789999999999 77766665444
No 135
>smart00400 ZnF_CHCC zinc finger.
Probab=26.40 E-value=82 Score=21.96 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=23.5
Q ss_pred EEEcCCCCChHHHHHHHHHHHHcCCCHHHHHHHH
Q psy3113 281 AVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRN 314 (328)
Q Consensus 281 lVHC~aGlGRTGtliaayLm~~~g~t~~eAi~~v 314 (328)
..||.+ -|+.|-++..+ |+..|.+..||+.++
T Consensus 23 ~~~Cf~-cg~gGd~i~fv-~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNVISFL-MKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCHHHHH-HHHHCcCHHHHHHHh
Confidence 588985 47788766554 455789999998865
No 136
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=26.22 E-value=2.6e+02 Score=26.20 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=38.5
Q ss_pred CcEEEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCCCC---Cc--cccccCCcEEEEeecCC
Q psy3113 195 NKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNY---DE--RKFTEAGLDHVDFYFPD 257 (328)
Q Consensus 195 ~~fla~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~~y---d~--~~~~~~gI~~~~l~~~D 257 (328)
..+|++.+|-+ -+....+++++||..||.=++..- .. +.....||..+-+.=|.
T Consensus 175 ~~iia~~gPfs---------~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 175 DRIIAMRGPFS---------EELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQ 233 (256)
T ss_pred hcEEEEeCCCC---------HHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCC
Confidence 44888888866 466789999999999998886432 11 22356788888775554
No 137
>KOG0348|consensus
Probab=26.08 E-value=85 Score=32.98 Aligned_cols=30 Identities=20% Similarity=0.461 Sum_probs=21.3
Q ss_pred hHHHHHHHhhcCCCcceeecCcEEEeccCCC
Q psy3113 175 VDEMEKYERIQFGDISWIVPNKLLAFSGPNT 205 (328)
Q Consensus 175 ~~ey~~~e~~~~gd~nwIvP~~fla~~~P~~ 205 (328)
.+-|+-.+++ +..++||+|+.++|+..-.+
T Consensus 225 ~Q~y~~~qKL-l~~~hWIVPg~lmGGEkkKS 254 (708)
T KOG0348|consen 225 LQIYETVQKL-LKPFHWIVPGVLMGGEKKKS 254 (708)
T ss_pred HHHHHHHHHH-hcCceEEeeceeeccccccc
Confidence 3455555555 45699999999988776544
No 138
>PHA03338 US22 family homolog; Provisional
Probab=26.01 E-value=59 Score=31.29 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=38.4
Q ss_pred CCcEEEEeecCCCCCCCh-HHHHHHHHHHHcCCCcEEEEcCCCCChHHHHHHH-HHHHHcCCCHHHHHHHHHh
Q psy3113 246 AGLDHVDFYFPDGTAPPN-DILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTVLTKRNQY 316 (328)
Q Consensus 246 ~gI~~~~l~~~D~~~P~~-~~i~~fi~~~~~~~~~VlVHC~aGlGRTGtliaa-yLm~~~g~t~~eAi~~v~~ 316 (328)
.|--+...+=+|..+.-. ..+.+|...--..=.| +||.+|++-+|.+..- |++...+..++....++.+
T Consensus 126 ~GrvfcY~g~~DDAiY~vA~s~eeFa~vGlR~vyp--ihC~agl~esgill~R~w~~ir~~~g~dav~RFviR 196 (344)
T PHA03338 126 FGRFYAYRGGADDAIYLLAASAEDFAAIGFRFFYP--IHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVR 196 (344)
T ss_pred CCeEEEEcCCCCceEEEeccCHHHHHhhcceeEEE--eccccccchhHHHHHHHHHHHHhhcCcchhhhhhhh
Confidence 343344444444443322 2355665544433333 4999999999988766 4455566555555555443
No 139
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=24.92 E-value=79 Score=29.06 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=26.0
Q ss_pred HHHcCCCcEEEEcCCCCChHHHHHH--HHHHHHcCCCH
Q psy3113 272 VCEKYKGPIAVHCKAGLGRTGCLIG--AYMIKHVRRRR 307 (328)
Q Consensus 272 ~~~~~~~~VlVHC~aGlGRTGtlia--ayLm~~~g~t~ 307 (328)
.++..+++++|-..||-|-|-+++. ++|+...+..+
T Consensus 8 ~i~~~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~ 45 (315)
T PF00580_consen 8 IIRSTEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPP 45 (315)
T ss_dssp HHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTG
T ss_pred HHhCCCCCEEEEeCCCCCchHHHHHHHHHhhccccCCh
Confidence 3445789999999999999988875 46777665553
No 140
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=24.83 E-value=1.8e+02 Score=28.52 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=39.6
Q ss_pred ChHHhHHHHHhCCCcEEEEcCCCCCCccccccCCcE-EEEeecCCCCCCChHHHHHHHHHH-HcCCCcEEEEcCCCCChH
Q psy3113 214 PPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLD-HVDFYFPDGTAPPNDILCEFIKVC-EKYKGPIAVHCKAGLGRT 291 (328)
Q Consensus 214 ~pe~~i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI~-~~~l~~~D~~~P~~~~i~~fi~~~-~~~~~~VlVHC~aGlGRT 291 (328)
++++..+.+++ + -.||++++.. .+....|. -+.+| ...+.+.+... ...+.+|+|+|..| .|+
T Consensus 6 s~~el~~~l~~-~-~~ivDvR~~~----e~~~ghIpgAi~ip--------~~~l~~~~~~~~~~~~~~IvvyC~~G-~rs 70 (376)
T PRK08762 6 SPAEARARAAQ-G-AVLIDVREAH----ERASGQAEGALRIP--------RGFLELRIETHLPDRDREIVLICASG-TRS 70 (376)
T ss_pred CHHHHHHHHhC-C-CEEEECCCHH----HHhCCcCCCCEECC--------HHHHHHHHhhhcCCCCCeEEEEcCCC-cHH
Confidence 45655555544 5 4689998632 22111111 11222 12233333332 24678999999988 576
Q ss_pred HHHHHHHHHHHcCCC
Q psy3113 292 GCLIGAYMIKHVRRR 306 (328)
Q Consensus 292 GtliaayLm~~~g~t 306 (328)
. .++.+++..|++
T Consensus 71 ~--~aa~~L~~~G~~ 83 (376)
T PRK08762 71 A--HAAATLRELGYT 83 (376)
T ss_pred H--HHHHHHHHcCCC
Confidence 4 344455567765
No 141
>KOG0374|consensus
Probab=24.12 E-value=3.6e+02 Score=26.42 Aligned_cols=160 Identities=19% Similarity=0.261 Sum_probs=94.2
Q ss_pred eCCceeeccccCCCCCCCchhH-HHHHHHHHHHhcCCCCCCcEEEEEeCCCCcchhhHHHHHHHHHHHHcCCCHHHHHHH
Q psy3113 48 TDETHVYLNFFGDFGPICLSTL-YRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKA 126 (328)
Q Consensus 48 ~d~~~~y~~f~~dfgpl~l~~~-~~~~~~l~~~l~~~~~~~~~iv~~~~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~ 126 (328)
-|..+++..=|-|.||-+|..| -.||-++. - ...++.+.+.+-..-.| ..-|.|-....++++...|+.
T Consensus 86 p~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~----y----p~~~~lLRGNHE~~~in--~~yGFydE~~rr~~~~~~w~~ 155 (331)
T KOG0374|consen 86 PDQNYVFLGDYVDRGKQSLETICLLFALKIK----Y----PENVFLLRGNHECASIN--RIYGFYDECKRRYGEIKLWKA 155 (331)
T ss_pred CcccEEEecccccCCccceEEeehhhhhhhh----C----CceEEEecccccccccc--ceeeeHHHHHHhcchHHHHHH
Confidence 4566777777999999999987 23333332 2 35677777777776677 445889999988888788888
Q ss_pred HHhcCCCCCcCCCCCCCCCC--------CccccHHHHHHHHHHHHhcccCCCCCCChHHHHHHHhhcCCCcceeecCcEE
Q psy3113 127 LQANNKVPFIAFQDASDENS--------KYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVPNKLL 198 (328)
Q Consensus 127 ~~~~~~~~~~pfrdas~~~~--------~~~lti~d~~~gl~ka~~~g~~~~~~fd~~ey~~~e~~~~gd~nwIvP~~fl 198 (328)
|+.. -..+|. .|.-+.. +..++-+|-++.+. +. ++..+.. ---|+.|-.|...+
T Consensus 156 F~~~--f~~mp~-~a~i~~kI~CmhGGlsp~l~~~~~i~~i~----rp------~~~~~~g-----ll~DLlWsdp~~~~ 217 (331)
T KOG0374|consen 156 FNDA--FNCLPL-AALIDGKILCMHGGLSPHLKSLDQIRAIP----RP------TDSPDKG-----LLCDLLWSDPDDDV 217 (331)
T ss_pred HHHH--HhhCch-hheecceEEEecCCCChhhcChHHHhhcc----CC------cCCCccc-----eeeeeeecCCCCCC
Confidence 8532 334565 3332221 11122122222222 11 1222211 24578898887653
Q ss_pred EeccCCCCCCCC-CCCChHHhHHHHHhCCCcEEEEcCCCC
Q psy3113 199 AFSGPNTTEQNT-CYHPPEFYLDYFLQNGVQLVVRLNQKN 237 (328)
Q Consensus 199 a~~~P~~~~~g~-~~~~pe~~i~~lk~~gI~~VV~L~~~~ 237 (328)
-+-.+.. .|. ..+.++...+.++++++..|++-.+-.
T Consensus 218 ~g~~~n~--Rg~s~~fg~~~v~~f~~~~~ldlivRaHqvv 255 (331)
T KOG0374|consen 218 PGWEEND--RGVSFTFGPAVVEDFCKKLDLDLIVRAHQVV 255 (331)
T ss_pred CCcccCC--CceeeEecHHHHHHHHHHhCcceEEEcCccc
Confidence 2222222 111 124577778899999999999987543
No 142
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=23.94 E-value=8.1e+02 Score=25.23 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.0
Q ss_pred HHHcCCCHHHHHHHHHhc
Q psy3113 113 IIYLKFTPNEIYKALQAN 130 (328)
Q Consensus 113 vi~~~~~~~~a~~~~~~~ 130 (328)
+-+++-+|+|-++.+...
T Consensus 64 ~rfl~edpwerlr~~r~~ 81 (468)
T PRK12581 64 IRFLNEDPWERLRTLKKG 81 (468)
T ss_pred hcccCCCHHHHHHHHHHh
Confidence 667889999999988764
No 143
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=23.94 E-value=92 Score=21.86 Aligned_cols=23 Identities=0% Similarity=-0.103 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhh
Q psy3113 295 IGAYMIKHVRRRRTVLTKRNQYH 317 (328)
Q Consensus 295 iaayLm~~~g~t~~eAi~~v~~r 317 (328)
+-..||..+|++.++|...+++.
T Consensus 18 AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 18 AKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHH
Confidence 44578999999999999998754
No 144
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=23.89 E-value=2.5e+02 Score=24.38 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=29.6
Q ss_pred HhHHHHHhCCCcEEE-EcCCCCCCccccccCCcEEEEeecCCCCCCChH-HHHHHHHHHHcCCCcEEEEcCCCCChHHHH
Q psy3113 217 FYLDYFLQNGVQLVV-RLNQKNYDERKFTEAGLDHVDFYFPDGTAPPND-ILCEFIKVCEKYKGPIAVHCKAGLGRTGCL 294 (328)
Q Consensus 217 ~~i~~lk~~gI~~VV-~L~~~~yd~~~~~~~gI~~~~l~~~D~~~P~~~-~i~~fi~~~~~~~~~VlVHC~aGlGRTGtl 294 (328)
..++.+++.|.+.|. ++.. .|...++.+ ++...++.+. ++..|++|+.. ++..|+
T Consensus 111 ~~~~~l~~~G~~~v~w~~~~--------------------~D~~~~~~~~i~~~~~~~~~-~g~Iil~Hd~~--~~~~t~ 167 (191)
T TIGR02764 111 AVLKAAESLGYTVVHWSVDS--------------------RDWKNPGVESIVDRVVKNTK-PGDIILLHASD--SAKQTV 167 (191)
T ss_pred HHHHHHHHcCCeEEEecCCC--------------------CccCCCCHHHHHHHHHhcCC-CCCEEEEeCCC--CcHhHH
Confidence 357788888887553 1111 122234433 3334444333 56789999943 454444
Q ss_pred H
Q psy3113 295 I 295 (328)
Q Consensus 295 i 295 (328)
-
T Consensus 168 ~ 168 (191)
T TIGR02764 168 K 168 (191)
T ss_pred H
Confidence 3
No 145
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=23.67 E-value=49 Score=24.96 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=14.0
Q ss_pred cEEEEcCCCCChHHHHHHHHH
Q psy3113 279 PIAVHCKAGLGRTGCLIGAYM 299 (328)
Q Consensus 279 ~VlVHC~aGlGRTGtliaayL 299 (328)
.|++-|.+|+|-| ++++--+
T Consensus 1 kIlvvC~~Gi~TS-~~~~~~i 20 (90)
T PF02302_consen 1 KILVVCGSGIGTS-LMVANKI 20 (90)
T ss_dssp EEEEEESSSSHHH-HHHHHHH
T ss_pred CEEEECCChHHHH-HHHHHHH
Confidence 4889999999944 5554433
No 146
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=23.11 E-value=54 Score=27.00 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=24.8
Q ss_pred CCCCcchhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCCC
Q psy3113 95 GNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAFQDASDENSK 147 (328)
Q Consensus 95 ~~~~~~~~naa~L~~~y~vi~~~~~~~~a~~~~~~~~~~~~~pfrdas~~~~~ 147 (328)
++||.|-+===+=|+||+|..++..-. ..++..|+|-++|+-.
T Consensus 29 ~TdP~K~VfEDlaIAAyLi~LW~~~~~----------~~~~~~FVDlGCGNGL 71 (112)
T PF07757_consen 29 STDPQKHVFEDLAIAAYLIELWRDMYG----------EQKFQGFVDLGCGNGL 71 (112)
T ss_pred cCCchhhHHHHHHHHHHHHHHHhcccC----------CCCCCceEEccCCchH
Confidence 566666543334455555544433211 1467889999999853
No 147
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=22.76 E-value=1.8e+02 Score=31.93 Aligned_cols=99 Identities=19% Similarity=0.324 Sum_probs=60.8
Q ss_pred HHHHHHHHHhc-CCCCCcCCCCCC-CCCCCccccHHHHHHHHHHHHhcccCCCCCCChHHHHHHHhhcCCCcceeecCcE
Q psy3113 120 PNEIYKALQAN-NKVPFIAFQDAS-DENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVPNKL 197 (328)
Q Consensus 120 ~~~a~~~~~~~-~~~~~~pfrdas-~~~~~~~lti~d~~~gl~ka~~~g~~~~~~fd~~ey~~~e~~~~gd~nwIvP~~f 197 (328)
+.++++.+..- +.||.+|----+ +..|.+.-...|-+.++.+..+..-+.+..|=++-. +|.+ ..++|+|= |.+|
T Consensus 244 ~~~vi~~yt~lTGkp~l~P~Wa~G~~~~~~~~~~~e~~v~~~i~~~~~~~IP~d~~~lD~~-~~~~-~~~~F~wd-~~~F 320 (772)
T COG1501 244 PKDVLEKYTDLTGKPPLPPKWALGWLWTSRYTYYDEDEVLEFIDEMRERDIPLDVFVLDID-FWMD-NWGDFTWD-PDRF 320 (772)
T ss_pred HHHHHHHHHHhhCCCCCCCceecCCCceeccccccHHHHHHHHhhcccccCcceEEEEeeh-hhhc-cccceEEC-cccC
Confidence 45554444332 478888876666 555554445567777776666554455544333321 3333 56677773 3333
Q ss_pred EEeccCCCCCCCCCCCChHHhHHHHHhCCCcEEEEcCCC
Q psy3113 198 LAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQK 236 (328)
Q Consensus 198 la~~~P~~~~~g~~~~~pe~~i~~lk~~gI~~VV~L~~~ 236 (328)
| .|+..++.+++.||+.|+.++..
T Consensus 321 -----P----------~pk~mi~~l~~~Gikl~~~i~P~ 344 (772)
T COG1501 321 -----P----------DPKQMIAELHEKGIKLIVIINPY 344 (772)
T ss_pred -----C----------CHHHHHHHHHhcCceEEEEeccc
Confidence 2 46778999999999999999864
No 148
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=22.44 E-value=86 Score=29.52 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.4
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHHH
Q psy3113 285 KAGLGRTGCLIGAYMIKHVRRRRTVLTKR 313 (328)
Q Consensus 285 ~aGlGRTGtliaayLm~~~g~t~~eAi~~ 313 (328)
--|++|||+-+++-++. |++.++|.+.
T Consensus 159 ~PGiSRSG~Ti~~~l~~--G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLLL--GLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHHC--CCCHHHHHHH
Confidence 56999999988887774 8898888776
No 149
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=22.06 E-value=3.5e+02 Score=26.25 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=48.6
Q ss_pred CCChHHhHHHHHhCCCcEEEEcCCCCCCccccccCCcEEEEe-ecCCCCCCChHHHHHHHHHHHc-----CCCcEEEEcC
Q psy3113 212 YHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDF-YFPDGTAPPNDILCEFIKVCEK-----YKGPIAVHCK 285 (328)
Q Consensus 212 ~~~pe~~i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI~~~~l-~~~D~~~P~~~~i~~fi~~~~~-----~~~~VlVHC~ 285 (328)
...|++.-+++.+-+ +.||+.+... + ..+ -|.+--.|......+|...+++ .+++|+.-|+
T Consensus 114 yl~p~~wn~~l~D~~-~vviDtRN~Y-E-----------~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCT 180 (308)
T COG1054 114 YLSPKDWNELLSDPD-VVVIDTRNDY-E-----------VAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCT 180 (308)
T ss_pred ccCHHHHHHHhcCCC-eEEEEcCcce-e-----------EeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcC
Confidence 346887777777766 6667666532 1 111 2345566777777777776653 4679999999
Q ss_pred CCCChHHHHHHHHHHHHcCCC
Q psy3113 286 AGLGRTGCLIGAYMIKHVRRR 306 (328)
Q Consensus 286 aGlGRTGtliaayLm~~~g~t 306 (328)
+|+ |.- -+.+||. ..||.
T Consensus 181 GGI-RCE-Kas~~m~-~~GF~ 198 (308)
T COG1054 181 GGI-RCE-KASAWMK-ENGFK 198 (308)
T ss_pred Cce-eeh-hhHHHHH-Hhcch
Confidence 996 432 2344443 45664
No 150
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=21.96 E-value=1.1e+02 Score=24.18 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=23.1
Q ss_pred EEEcCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHh
Q psy3113 281 AVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQY 316 (328)
Q Consensus 281 lVHC~aGlGRTGtliaayLm~~~g~t~~eAi~~v~~ 316 (328)
..||.+ -|..|-++.. +|+..+++..||+.++..
T Consensus 54 ~~~Cf~-Cg~~Gd~i~~-v~~~~~~~f~eAv~~l~~ 87 (97)
T PF01807_consen 54 RFKCFG-CGKGGDVIDF-VMKYEGCSFKEAVKWLAE 87 (97)
T ss_dssp EEEETT-T--EE-HHHH-HHHHHT--HHHHHHHHHH
T ss_pred eEEECC-CCCCCcHHhH-HHHHhCCCHHHHHHHHHH
Confidence 689995 6899987655 477789999999999864
No 151
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.90 E-value=3.5e+02 Score=25.83 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=46.0
Q ss_pred CChHHhHHHHHhCCCcEE--EEcCCCC-----------CCc---cccccCCcEEEEeecCCCCCCChHHHHHHHHHHHcC
Q psy3113 213 HPPEFYLDYFLQNGVQLV--VRLNQKN-----------YDE---RKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY 276 (328)
Q Consensus 213 ~~pe~~i~~lk~~gI~~V--V~L~~~~-----------yd~---~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~~~~ 276 (328)
|+|. .++.|++.||+.| =++.+-. -.+ +.....|++. -|.++|--..+.+.++...+.
T Consensus 42 HN~~-Vv~~L~~~Gv~~v~~~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~v-----iDaTCP~V~k~~~~v~~~~~~ 115 (281)
T PRK12360 42 HNNQ-VVSDLEEKGVKTIEESEIDSLKEGDVVIIRSHGVSKKVYKDLKDKGLEI-----IDATCPFVKKIQNIVEEYYNK 115 (281)
T ss_pred CCHH-HHHHHHHCcCEEECcCchhhCCCCCEEEEeCCCCCHHHHHHHHHCCCeE-----EeCCCccchHHHHHHHHHHhC
Confidence 5666 5999999999988 5544211 111 1223445544 477899888888888877777
Q ss_pred CCcEEEEcCCC
Q psy3113 277 KGPIAVHCKAG 287 (328)
Q Consensus 277 ~~~VlVHC~aG 287 (328)
+..|+|+-..|
T Consensus 116 Gy~iviiG~~~ 126 (281)
T PRK12360 116 GYSIIIVGDKN 126 (281)
T ss_pred CCEEEEEcCCC
Confidence 88888876543
No 152
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=20.94 E-value=5.8e+02 Score=25.71 Aligned_cols=66 Identities=20% Similarity=0.348 Sum_probs=32.6
Q ss_pred hHHHHHhCCCcEEEEcCCCC-CCc-------cccccCCcEEEEeecC-CCCCCChHHHHHHHHHHHc--C-CCcEEEEcC
Q psy3113 218 YLDYFLQNGVQLVVRLNQKN-YDE-------RKFTEAGLDHVDFYFP-DGTAPPNDILCEFIKVCEK--Y-KGPIAVHCK 285 (328)
Q Consensus 218 ~i~~lk~~gI~~VV~L~~~~-yd~-------~~~~~~gI~~~~l~~~-D~~~P~~~~i~~fi~~~~~--~-~~~VlVHC~ 285 (328)
.+++.+++|+.....+-.-. .+. +.....|...+.++-. ....|. .+.+.++.+.+ + .-++-+||.
T Consensus 122 ~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~~~P~--~~~~~i~~l~~~v~~~~~l~~H~H 199 (409)
T COG0119 122 AVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGVATPN--EVADIIEALKANVPNKVILSVHCH 199 (409)
T ss_pred HHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcCccCHH--HHHHHHHHHHHhCCCCCeEEEEec
Confidence 46788888966665443211 111 1112445555555422 223332 34444444332 1 478888886
No 153
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=20.89 E-value=1e+02 Score=24.99 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=17.0
Q ss_pred cCCCcEEEEcC-CCCChHHHHHHHHHHH
Q psy3113 275 KYKGPIAVHCK-AGLGRTGCLIGAYMIK 301 (328)
Q Consensus 275 ~~~~~VlVHC~-aGlGRTGtliaayLm~ 301 (328)
..+.+|+|||. +| .||.. ++.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHH-HHHHHHH
Confidence 35789999997 66 77754 4445544
No 154
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=20.79 E-value=81 Score=20.54 Aligned_cols=14 Identities=36% Similarity=0.482 Sum_probs=11.4
Q ss_pred HcCCCHHHHHHHHH
Q psy3113 115 YLKFTPNEIYKALQ 128 (328)
Q Consensus 115 ~~~~~~~~a~~~~~ 128 (328)
.++.|||||...+.
T Consensus 20 ~l~LtpEDAvEaLi 33 (35)
T PF08383_consen 20 ALGLTPEDAVEALI 33 (35)
T ss_pred hcCCCHHHHHHHHh
Confidence 36899999988775
No 155
>PRK07411 hypothetical protein; Validated
Probab=20.28 E-value=1.1e+02 Score=30.44 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=41.9
Q ss_pred CChHHhHHHHHhCC-CcEEEEcCCCC-CCccccccCCcEEEEeecCCCCCCChHHHHHHHHHHHcCCCcEEEEcCCCCCh
Q psy3113 213 HPPEFYLDYFLQNG-VQLVVRLNQKN-YDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGR 290 (328)
Q Consensus 213 ~~pe~~i~~lk~~g-I~~VV~L~~~~-yd~~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~~~~~~~VlVHC~aGlGR 290 (328)
.++++..+.+++-. -..||+++++. |....+ .| -+.+|+.+..... ...++.+ + .++.+|+|+|..| .|
T Consensus 284 Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghI--pG--AiniP~~~l~~~~--~~~~l~~-l-~~d~~IVvyC~~G-~R 354 (390)
T PRK07411 284 MTVTELKALLDSGADDFVLIDVRNPNEYEIARI--PG--SVLVPLPDIENGP--GVEKVKE-L-LNGHRLIAHCKMG-GR 354 (390)
T ss_pred cCHHHHHHHHhCCCCCeEEEECCCHHHhccCcC--CC--CEEccHHHhhccc--chHHHhh-c-CCCCeEEEECCCC-HH
Confidence 45666555555432 23688998632 332222 11 2335544321110 0111111 1 2467999999988 48
Q ss_pred HHHHHHHHHHHHcCCC
Q psy3113 291 TGCLIGAYMIKHVRRR 306 (328)
Q Consensus 291 TGtliaayLm~~~g~t 306 (328)
|.. ++..++..|++
T Consensus 355 S~~--aa~~L~~~G~~ 368 (390)
T PRK07411 355 SAK--ALGILKEAGIE 368 (390)
T ss_pred HHH--HHHHHHHcCCC
Confidence 753 44455667886
No 156
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=20.22 E-value=1.4e+02 Score=27.09 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=43.7
Q ss_pred HhHHHHHhCCCcEEEEcCCCCCCccccccCCcEEEEeecCCCCCCChHHHHHHHHHHHcCCCcEEE-----EcCCC
Q psy3113 217 FYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAV-----HCKAG 287 (328)
Q Consensus 217 ~~i~~lk~~gI~~VV~L~~~~yd~~~~~~~gI~~~~l~~~D~~~P~~~~i~~fi~~~~~~~~~VlV-----HC~aG 287 (328)
+.+++|+++||++|.=..--. .+. ...|....+..-.|....+.+.++++++.+.+.+=.|++ |+..+
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~-~~~--~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFE-SPN--GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EE-SSS--STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred HhhHHHHHcCCCceecccccc-ccc--ccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 358899999999996443111 110 234544455444555566678899999999887766655 76554
Done!