RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3113
(328 letters)
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 291 bits (745), Expect = 2e-97
Identities = 124/286 (43%), Positives = 184/286 (64%), Gaps = 6/286 (2%)
Query: 20 EIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCDKLKAK 79
DRL FA S + + +H+F D Y NF+ DFGP+ L+ +YRYC K+ K
Sbjct: 12 LDITDRLCFAILYS--RPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKK 69
Query: 80 LNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAFQ 139
L S T+ K I+H+TG++ +K+ NAAFL+GCY +IYL TP E Y+ L +I F+
Sbjct: 70 LKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIFGE-TSYIPFR 128
Query: 140 DASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVPNKLLA 199
DA+ + + + LL+CF+AV KA Q+ +F+ F++DE E YE+ + GD++WI+P++ +A
Sbjct: 129 DAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIPDRFIA 188
Query: 200 FSGPNTT---EQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFP 256
F GP++ E H PE Y+ YF + V ++RLN++ YD ++FT+AG DH D +F
Sbjct: 189 FCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFA 248
Query: 257 DGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH 302
DG+ P + I+ EF+ +CE +G IAVH KAGLGRTG LI Y++KH
Sbjct: 249 DGSTPTDAIVKEFLDICENAEGAIAVHSKAGLGRTGTLIACYIMKH 294
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 134 bits (338), Expect = 6e-39
Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 26/154 (16%)
Query: 182 ERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDER 241
+Q + SW++P +L + P + + L GV+ +V L ++
Sbjct: 2 LGVQPPNFSWVLPGRLAGLALPRLPA----------HYQFLLDLGVRHLVSLTERGPPHS 51
Query: 242 KFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY---KGPIAVHCKAGLGRTGCLIGAY 298
+ GL PD P D + F+++ ++ + VHC G GRTG ++ Y
Sbjct: 52 -DSCPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACY 110
Query: 299 MIKH-----------VRR-RRTVLTKRNQYHQLR 320
++K +RR R + Q +
Sbjct: 111 LVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVF 144
Score = 28.9 bits (65), Expect = 1.5
Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 10/78 (12%)
Query: 54 YLNF-FGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIH-YTGNNPKKRLNAAFLIGCY 111
DF P + R+ + V +H G R ++ CY
Sbjct: 59 LHRLRIPDFCPPAPDQIDRFVQIVDEANAR---GEAVGVHCALGFG---R--TGTMLACY 110
Query: 112 AIIYLKFTPNEIYKALQA 129
+ + ++
Sbjct: 111 LVKERGLAAGDAIAEIRR 128
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 122 bits (307), Expect = 3e-34
Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 37/157 (23%)
Query: 189 ISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLN----------QKNY 238
+ W+ + P T + + + GV+ V+ L K+Y
Sbjct: 1 MYWVRRKTIGGSGLPYTEN----------EILEWRKEGVKRVLVLPEDWEIEESWGDKDY 50
Query: 239 DERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAY 298
+ GL + PDG P + +K K VHC G+GRTG ++ +Y
Sbjct: 51 YLSILKKNGLQPLHIPIPDGGVPSDSQFLTIMKWLLSEKEGNLVHCVGGIGRTGTILASY 110
Query: 299 MIKH-----------VRRRR--TVLTKRNQYHQLRWV 322
+I VR R V T Q ++
Sbjct: 111 LILTEGLEVESAIDEVRLVRPGAVQTYE----QEMFL 143
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa, MSGPP,
unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Length = 167
Score = 105 bits (263), Expect = 7e-28
Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 31/159 (19%)
Query: 193 VPNKLLAFSGPNTT---------EQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKF 243
+ L+ P Y+ GV+ +VR+ YD
Sbjct: 5 MNATLIDCCDPQKPSRVLFHFLILDAPSPSNLPTYIKELQHRGVRHLVRVCGPTYDATLV 64
Query: 244 TEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGP-----------IAVHCKAGLGRTG 292
G+D + F DG P +L ++K+ + I VHC AGLGR
Sbjct: 65 KSRGIDVHSWPFDDGAPPTRAVLDSWLKLLDTELARQQEDPSVPPPTIGVHCVAGLGRAP 124
Query: 293 CLIGAYMIKH-----------VRRRRTVLTKRNQYHQLR 320
L+ ++++ +R +R + Q H +
Sbjct: 125 ILVALALVEYGNVSALDAIALIREKRKGAINQTQMHWIT 163
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine
phosphatase IVA1...; structural genomics, NYSGXRC,
unknown function, PSI; 1.90A {Homo sapiens} SCOP:
c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Length = 159
Score = 100 bits (251), Expect = 3e-26
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 29/145 (20%)
Query: 195 NKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFY 254
+ L P +++ + GV +VR+ + YD + G+ +D+
Sbjct: 16 MRFLITHNPTN-------ATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWP 68
Query: 255 FPDGTAPPNDILCEFIKVCEKY-----KGPIAVHCKAGLGRTGCLIGAYMIKH------- 302
F DG P N I+ +++ + + IAVHC AGLGR L+ +I+
Sbjct: 69 FDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDA 128
Query: 303 -----VRRRRTVLTKRNQYHQLRWV 322
+RR +K QL ++
Sbjct: 129 VQFIRQKRRGAFNSK-----QLLYL 148
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual
specific phosphatase, COMP with peptide, hydrolase;
2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Length = 189
Score = 99.8 bits (248), Expect = 2e-25
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 29/145 (20%)
Query: 195 NKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFY 254
+ L P +++ + GV +VR+ + YD + G+ +D+
Sbjct: 37 MRFLITHNPTN-------ATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWP 89
Query: 255 FPDGTAPPNDILCEFIKVCEKY-----KGPIAVHCKAGLGRTGCLIGAYMIKH------- 302
F DG P N I+ +++ + + IAVHC AGLGR L+ +I+
Sbjct: 90 FDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDA 149
Query: 303 -----VRRRRTVLTKRNQYHQLRWV 322
+RR +K QL ++
Sbjct: 150 VQFIRQKRRGAFNSK-----QLLYL 169
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 97.7 bits (243), Expect = 8e-25
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 15/124 (12%)
Query: 192 IVPNKLLAFSGPNTTEQNT------CYHPPEFYLDYFLQNGVQLVVRLN--QKNYDERKF 243
I + L+ F P E E + + ++ L K YD F
Sbjct: 17 IKDSNLICFKTPLRPELFAYVTSEEDVWTAEQIVKQN--PSIGAIIDLTNTSKYYDGVHF 74
Query: 244 TEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY-----KGPIAVHCKAGLGRTGCLIGAY 298
AGL + P T PP I+ EFI +++ + VHC G+ RTG ++ Y
Sbjct: 75 LRAGLLYKKIQVPGQTLPPESIVQEFIDTVKEFTEKCPGMLVGVHCTHGINRTGYMVCRY 134
Query: 299 MIKH 302
++
Sbjct: 135 LMHT 138
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 90.9 bits (225), Expect = 1e-21
Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 15/129 (11%)
Query: 189 ISWIVPNKLLAFSGPNTTEQNTCYHP-----PEFYLDYF--LQNGVQLVVRLN--QKNYD 239
V + L ++ P +Y L+ + L+V L + YD
Sbjct: 38 RGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMGLLVDLTNTSRFYD 97
Query: 240 ERKFTEAGLDHVDFYFPD-GTAPPNDILCEFIKVCEKY-----KGPIAVHCKAGLGRTGC 293
+ G+ ++ G P + FI++CE++ I VHC G RTG
Sbjct: 98 RNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGF 157
Query: 294 LIGAYMIKH 302
LI A++++
Sbjct: 158 LICAFLVEK 166
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 88.8 bits (219), Expect = 3e-20
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 181 YERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPE---FYLDYFLQNGVQLVVRLNQKN 237
E D+++I PN ++A P + + + +LD +N ++ +++
Sbjct: 11 QEDGFDLDLTYIYPN-IIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNLCAERH 69
Query: 238 YDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY-----KGPIAVHCKAGLGRTG 292
YD KF + F D P +++ F + +++ A+HCKAG GRTG
Sbjct: 70 YDTAKF---NCRVAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTG 126
Query: 293 CLIGAYMIKH 302
+I AY++
Sbjct: 127 VMICAYLLHR 136
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 81.3 bits (200), Expect = 2e-18
Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 32/167 (19%)
Query: 183 RIQFGDISWIVPNKLLAFSG-PNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKN---- 237
I + +S + ++ L P ++ + + + G+Q + +
Sbjct: 28 HISWLSLSRVNCSQFLGLCALPGCKFKDVRRNVQK-DTEELKSCGIQDIFVFCTRGELSK 86
Query: 238 ----YDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY---KGPIAVHCKAGLGR 290
+ + G+ DG P CE ++ +H GLGR
Sbjct: 87 YRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKTLIHSYGGLGR 146
Query: 291 TGCLIGAYM------------IKHVRRRRT---VLTKRNQYHQLRWV 322
+ + + I +R R + T + Q ++
Sbjct: 147 SCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIK----QYNYL 189
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 70.4 bits (171), Expect = 7e-14
Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 24/161 (14%)
Query: 181 YERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEF---YLDYFLQNGVQLVVRLNQKN 237
+ D++++ + ++A S P++ Q+ +P + + ++ +++
Sbjct: 19 RKDGFDLDLTYVTDH-VIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERG 77
Query: 238 YDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY-----KGPIAVHCKAGLGRTG 292
YDE KF D P L +FI + + IA+H K G GRTG
Sbjct: 78 YDETKFDN---HVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTG 134
Query: 293 CLIGAYMIKH------------VRRRRTVLTKRNQYHQLRW 321
L+ +++++ RRT + + +
Sbjct: 135 TLVSSWLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGVET 175
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 69.6 bits (169), Expect = 1e-13
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 13/134 (9%)
Query: 178 MEKYERIQFG--DISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQN--GVQLVVRL 233
++ G D +++ ++ S P + + + + V L
Sbjct: 11 IQSVTSYTKGDLDFTYVTSR-IIVMSFPLDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNL 69
Query: 234 NQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY-----KGPIAVHCKAGL 288
+ K+Y KF + +P AP L + + K VHC G
Sbjct: 70 SPKSYRTAKF---HSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGR 126
Query: 289 GRTGCLIGAYMIKH 302
+ L+GA I
Sbjct: 127 AASSILVGAMFIFC 140
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein
tyrosine phosphatase, inositol phosphate, I phosphatase;
HET: IHP; 1.60A {Selenomonas ruminantium} PDB: 1u24_A
1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A
3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Length = 314
Score = 65.9 bits (160), Expect = 2e-12
Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 10/123 (8%)
Query: 213 HPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKV 272
L V R+ + ++ AG+ + D P + + F+
Sbjct: 147 TVYIAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWPTPENIDRFLAF 206
Query: 273 CEKY--KGPIAVHCKAGLGRTGCLIGAY-MIKHVR-------RRRTVLTKRNQYHQLRWV 322
+ H +AG+GRT + M+K+ R+ +
Sbjct: 207 YRTLPQDAWLHFHSEAGVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFYYGEFPIKT 266
Query: 323 PGP 325
Sbjct: 267 KDK 269
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 62.0 bits (151), Expect = 5e-12
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 22/123 (17%)
Query: 220 DYFLQNGVQLVVRLNQKNY------DERKFTEAGLDHVDFYFPDGTAPPN----DILCEF 269
L V+ V+ +N++ +++ +AG++ + D T P +F
Sbjct: 22 RLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQF 81
Query: 270 IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK-----------HVRRRR-TVLTKRNQYH 317
+ + VHCKAG R+ ++ AY+I+ + + R + + +Q
Sbjct: 82 ALKYQALGQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLE 141
Query: 318 QLR 320
L+
Sbjct: 142 VLK 144
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 63.7 bits (154), Expect = 2e-11
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 213 HPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKV 272
LD V++ +++ + GL + D P + EFI
Sbjct: 464 SLIVAELDKDKMPIDPKPVKIESVMTEQQLVEKNGLHYYRIAATDHIWPSAANIDEFINF 523
Query: 273 CEKYK--GPIAVHCKAGLGRTGCLIGAY-MIKH 302
+ HC+AG GRT + Y M+K+
Sbjct: 524 TRTMPANAWLHFHCQAGAGRTTAYMAMYDMMKN 556
Score = 56.7 bits (136), Expect = 3e-09
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 240 ERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYK--GPIAVHCKAGLGRTGCLIGA 297
E + G ++ D P + + +F++ + + HC AG+GRT +
Sbjct: 193 EEMVKQHGANYFRLTLQDHFRPDDPDVDKFLEFYKSLPKDAWLHYHCYAGMGRTTIFMVM 252
Query: 298 YMIKH 302
+ I
Sbjct: 253 HDILK 257
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 6e-10
Identities = 43/322 (13%), Positives = 82/322 (25%), Gaps = 111/322 (34%)
Query: 26 LYFA------TFKSNRERPTTTKIHFFCTDETHV--------YLNFFGDFGPICLSTLYR 71
+F F PT F D+ +L + + S + +
Sbjct: 26 SFFIASQLQEQFNKILPEPTEG----FAADDEPTTPAELVGKFLGYVSS--LVEPSKVGQ 79
Query: 72 YCDKLKAKLN---SSTLK----HKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIY 124
+ L L + L+ H + N + LI Y
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY------------I 127
Query: 125 KALQANNKVPFIA------FQDASDENSK-YTLELLECFNAVFKARQHNLFDFDDFDVDE 177
A + PF F+ + N++ + F Q N D+ +E
Sbjct: 128 TARIMAKR-PFDKKSNSALFRAVGEGNAQLVAI-----FGG-----QGNTDDY----FEE 172
Query: 178 MEK-YERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQK 236
+ Y+ YH + ++ + + L +
Sbjct: 173 LRDLYQT----------------------------YHV---LVGDLIKFSAETLSELIRT 201
Query: 237 NYDERKFTEAGLDHVDFYFPDGTAPPNDIL---------------CEFIKVCEKYK---G 278
D K GL+ +++ P D L ++ + G
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 279 PIAVHCKAGLGRTGCLIGAYMI 300
+ + K G + L+ A I
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAI 283
Score = 40.0 bits (93), Expect = 0.001
Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 45/158 (28%)
Query: 12 VKDL----DLFTEIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLS 67
+D+ D KD F+ P IHF + N + +
Sbjct: 1642 AQDVWNRADNHF---KDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN----YSAMIFE 1694
Query: 68 TLY---RYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLN-------AAFLIGCYAII-YL 116
T+ +K+ ++N + YT + K L+ A L+ A L
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTS------YTFRSEKGLLSATQFTQPALTLME-KAAFEDL 1747
Query: 117 K---FTPN----------EIYKALQANNKVPFIAFQDA 141
K P E Y AL + V ++ +
Sbjct: 1748 KSKGLIPADATFAGHSLGE-YAALASLADV--MSIESL 1782
Score = 31.9 bits (72), Expect = 0.38
Identities = 56/352 (15%), Positives = 99/352 (28%), Gaps = 141/352 (40%)
Query: 63 P-ICLSTLYRYC----------DKLKAKLNSSTLKHKVII------------HYTGNNPK 99
P I + L Y +L++ L +T + ++ + + +
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF-VSVR 297
Query: 100 KRLNAAFLIGC-----YAIIYLKFTPNEIYKALQANNKVP--FIAFQDASDENSKYTLE- 151
K + F IG Y L P+ + +L+ N VP ++ + + E ++
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSL--PPSILEDSLENNEGVPSPMLSISNLTQE----QVQD 351
Query: 152 LLECFNAVFKARQH---NLFDFDDFDVDEMEKYERIQFGDISWIV---PNKLLAF----- 200
+ N+ A + +L + G + +V P L
Sbjct: 352 YVNKTNSHLPAGKQVEISLVN-----------------GAKNLVVSGPPQSLYGLNLTLR 394
Query: 201 --SGPNTTEQN------------------TC-YHPPEFYL----DYFLQNGVQLVVRLNQ 235
P+ +Q+ +H L D ++ V+ V N
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH--LLVPASDLINKDLVKNNVSFNA 452
Query: 236 KN-----YDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPI----AVHCKA 286
K+ YD T G D G+ + + I P+ KA
Sbjct: 453 KDIQIPVYD----TFDGSDLRVL---SGSISER--IVDCI--IRL---PVKWETTTQFKA 498
Query: 287 ------GLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLRWV----PGPLET 328
G G L VLT RN+ V G L+
Sbjct: 499 THILDFGPGGASGL-------------GVLTHRNK--DGTGVRVIVAGTLDI 535
Score = 30.8 bits (69), Expect = 0.68
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 26/72 (36%)
Query: 4 HTPLEGHDVKDLD------LFTEIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNF 57
T +G D++ L + I + + + TTT+ TH+ L
Sbjct: 461 DT-FDGSDLRVLSGSISERIVDCIIRLPVKW---------ETTTQ-----FKATHI-L-- 502
Query: 58 FGDFGPICLSTL 69
DFGP S L
Sbjct: 503 --DFGPGGASGL 512
Score = 28.1 bits (62), Expect = 5.7
Identities = 21/125 (16%), Positives = 32/125 (25%), Gaps = 39/125 (31%)
Query: 73 CDK-LKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCY---AI--IYLKFTPNEIYKA 126
D K S I+ NNP G I Y I
Sbjct: 1649 ADNHFKDTYGFS------ILDIVINNPVN---LTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 127 LQANNKVPFIAFQDASDENSKYTLE-----------------LLECFNAVFKA-RQHNLF 168
K+ F++ ++ ++ YT L+E A F+ + L
Sbjct: 1700 KLKTEKI----FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK--AAFEDLKSKGLI 1753
Query: 169 DFDDF 173
D
Sbjct: 1754 PADAT 1758
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase
activating protein, 4-helix bundle, disorder, signaling
protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1
c.45.1.2 PDB: 1g4u_S
Length = 383
Score = 49.9 bits (119), Expect = 5e-07
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 16/76 (21%)
Query: 256 PDGTAPPN-DILCEFIKVCEKY------------KGPIAVHCKAGLGRTGCLIGAYMIKH 302
PD P+ D L + K +HC G+GRTG + A ++K
Sbjct: 280 PDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKD 339
Query: 303 VRR---RRTVLTKRNQ 315
+ R+
Sbjct: 340 NPHSNLEQVRADFRDS 355
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal
transduction, glycoprotein, phosphorylation, signal;
2.25A {Mus musculus} SCOP: c.45.1.2
Length = 302
Score = 45.7 bits (109), Expect = 9e-06
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 256 PDGTAP--PNDILCEFIK----VCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRT 308
PD P P +L +F+K +Y G I VHC AG+GRTG + M+ + R
Sbjct: 199 PDFGVPFTPIGML-KFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERK 257
Query: 309 V 309
V
Sbjct: 258 V 258
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A
{Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A*
1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A*
1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A*
1pa9_A* 1yts_A
Length = 306
Score = 45.5 bits (108), Expect = 1e-05
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 277 KGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTV 309
K +H +AG+GRT LIGA M + R +
Sbjct: 234 KLRPVIHSRAGVGRTAQLIGA-MCMNDSRNSQL 265
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human
tyrosine phosphatase catalytic domain, LC-PTP,
hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A
2hvl_A 2qdp_A 2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A*
3d42_A* 2a3k_A
Length = 309
Score = 45.4 bits (108), Expect = 1e-05
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 256 PDGTAPPNDILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRT 308
P+ P L + E+ GPI VHC AG+GRTGC I + ++ R
Sbjct: 210 PESAGP----LLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGE 265
Query: 309 V 309
V
Sbjct: 266 V 266
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 45.9 bits (109), Expect = 1e-05
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 256 PDGTAPPNDILCEFIKVCEKY----KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
P+ AP + E I V ++ GP VH + G G L + + + V
Sbjct: 495 PNPDAPISSTF-ELINVIKEEALTRDGPTIVHDEYGAVSAGMLCALTTLSQQLENENAV 552
Score = 44.7 bits (106), Expect = 3e-05
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 256 PDGTAP--PNDILCEFI-KVCEKY---KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRT 308
PD P +L F+ + GP+ VHC AG+GRTG I M++ ++ + T
Sbjct: 202 PDMGVPEYALPVL-TFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 260
Query: 309 V 309
V
Sbjct: 261 V 261
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 45.8 bits (109), Expect = 1e-05
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 256 PDGTAP--PNDILCEFIK----VCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRT 308
PD P P +L +F+K + + GPI VHC AG+GRTG I M+ + +
Sbjct: 197 PDFGVPFTPIGML-KFLKKVKTLNPVHAGPIVVHCSAGVGRTGTFIVIDAMMAMMHAEQK 255
Query: 309 V 309
V
Sbjct: 256 V 256
Score = 42.7 bits (101), Expect = 1e-04
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 21/104 (20%)
Query: 227 VQLVVRLNQKNYDERKF--TEAGLDHVD---------FYF---PDGTAPPN-DILCEFIK 271
+++ + R F T F+F P+ P + + I
Sbjct: 448 IEIKNDTLSEAISIRDFLVTLNQPQARQGEQVRVVRQFHFHGWPEIGIPAEGKGMIDLIA 507
Query: 272 VCEKY-----KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
+K PI VHC AG GRTG I +++ V+ +
Sbjct: 508 AVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLL 551
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase,
STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB:
2bij_A 2bv5_A*
Length = 305
Score = 45.0 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 256 PDGTAPPNDILCEFIKVCEKY-------KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRR 307
PD P L ++ E+ PI VH AG+GRTGC I + +R+
Sbjct: 207 PDRAPP----LLHLVREVEEAAQQEGPHCAPIIVHSSAGIGRTGCFIATSICCQQLRQEG 262
Query: 308 TV 309
V
Sbjct: 263 VV 264
>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R;
PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase;
1.81A {Mus musculus} SCOP: c.45.1.2 PDB: 2a8b_A
Length = 297
Score = 45.0 bits (107), Expect = 2e-05
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 277 KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
+GP+ VHC AG+GRTGC I + ++ V
Sbjct: 222 RGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVV 255
>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine
phosphatase, human, structural GE structural genomics
consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo
sapiens} PDB: 1rpm_A 2c7s_A
Length = 286
Score = 44.9 bits (107), Expect = 2e-05
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 256 PDGTAP--PNDILCEFIK----VCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRT 308
PD P +L F++ + GPI VHC AG GRTGC I M+
Sbjct: 186 PDHGVPCYATGLL-GFVRQVKFLNPPEAGPIVVHCSAGAGRTGCFIAIDTMLDMAENEGV 244
Query: 309 V 309
V
Sbjct: 245 V 245
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 45.5 bits (108), Expect = 2e-05
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 256 PDGTAP--PNDILCEFIK----VCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRT 308
PD P P+ +L + + + GPI VH AG+GRTG IG M++ +
Sbjct: 197 PDHGVPEDPHLLL-KLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENK 255
Query: 309 V 309
V
Sbjct: 256 V 256
Score = 39.3 bits (92), Expect = 0.001
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 278 GPIAVHCKAGLGRTGCLIGAYM-IKHVRRRRTV 309
P+ +HC+ G +TG ++ V
Sbjct: 540 TPLLIHCRDGSQQTGIFCALLNLLESAETEEVV 572
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 44.6 bits (106), Expect = 2e-05
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 256 PDGTAPPNDILCEFIKVCEKY--KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
P L FI GPI HC AG+GR+G LI ++ + +
Sbjct: 220 PSQPDD----LLTFISYMRHIHRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDF 272
>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine
phosphatase, hydrolase; 2.39A {Trypanosoma brucei}
Length = 306
Score = 44.6 bits (106), Expect = 2e-05
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 277 KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
PI VHC AG+GRTG LIGA + H+ R
Sbjct: 222 TSPILVHCSAGIGRTGTLIGAYAALLHIERGILT 255
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase,
phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Length = 253
Score = 44.1 bits (105), Expect = 2e-05
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 256 PDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTGCLIGA-YMIKHVRRRR 307
P+ P ++ I +K + PI VHC AG GRTG +++ V+
Sbjct: 149 PEVGIPSDGKGMI-NIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEG 207
Query: 308 TV 309
+
Sbjct: 208 IL 209
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 45.0 bits (107), Expect = 2e-05
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 256 PDGTAP--PNDILCEFIK----VCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRT 308
PD P P IL F++ GP+ VHC AG+GRTGC I M++ ++ +T
Sbjct: 183 PDHGVPEYPTPIL-AFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKT 241
Query: 309 V 309
V
Sbjct: 242 V 242
Score = 40.8 bits (96), Expect = 4e-04
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 23/103 (22%)
Query: 227 VQLVVRLNQKNYDERKFTEAGLDHVD---------FYF---PDGTAPPN-DILCEFIKVC 273
V + N Y R+F + F F P+ P + +FI
Sbjct: 434 VDPMAEYNMPQYILREFK---VTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQV 490
Query: 274 EKY------KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
K GPI VHC AG+GRTG I +++ +R V
Sbjct: 491 HKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVV 533
>2pa5_A Tyrosine-protein phosphatase non-receptor type 9; protein tyrosine
phosphatase, MEG2, PTPN9, structural genomi structural
genomics consortium, SGC; 1.60A {Homo sapiens}
Length = 314
Score = 44.2 bits (105), Expect = 3e-05
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 277 KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
+ PI VHC AG+GRTG + + T+
Sbjct: 233 EPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTL 266
>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine
phosphatase, glepp1, PTPU2, structural genom structural
genomics consortium, SGC; 2.15A {Homo sapiens} PDB:
2g59_A 2pi7_A
Length = 295
Score = 44.1 bits (105), Expect = 3e-05
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 256 PDGTAPPNDILCEFIKVCEKYK-------GPIAVHCKAGLGRTGCLIGA-YMIKHVRRRR 307
PD P + ++ + GP+ +HC AG+GRTG I +++H+R
Sbjct: 188 PDHGVPTANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHE 247
Query: 308 TV 309
V
Sbjct: 248 FV 249
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor
phosphatase, human, structural GENO structural genomics
consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB:
3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A*
3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A*
3qcn_A
Length = 320
Score = 44.2 bits (105), Expect = 3e-05
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 256 PDGTAP--PNDILCEFI-KVCEKY---KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRT 308
PD P +L F+ + GP+ VHC AG+GRTG I M++ ++ + T
Sbjct: 220 PDMGVPEYALPVL-TFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 278
Query: 309 V 309
V
Sbjct: 279 V 279
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A
{Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Length = 342
Score = 44.3 bits (105), Expect = 3e-05
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 277 KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
+ PI VHC AG+GRTG I +I + TV
Sbjct: 237 ESPILVHCSAGVGRTGTFIAIDRLIYQIENENTV 270
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14,
hydrolase; 1.65A {Homo sapiens}
Length = 325
Score = 44.2 bits (105), Expect = 3e-05
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 277 KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
PI VHC AG+GRTG LI + MI + V
Sbjct: 252 HPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKV 285
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU
genomics, structural genomics consortium, SGC,
hydrolase; 1.54A {Homo sapiens}
Length = 287
Score = 43.8 bits (104), Expect = 3e-05
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 256 PDGTAP--PNDILCEFIKVCEKY---KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
PD P +D L EF+ P+ VHC AG+GRTG L+ + R +
Sbjct: 184 PDHGVPDDSSDFL-EFVNYVRSLRVDSEPVLVHCSAGIGRTGVLVTMETAMCLTERNLPI 242
>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine
phosphatase, WPD-loop, sulfamic acid, inhibitor, drug
design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A
2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A*
2i4h_A* 2i5x_A* 2ahs_A
Length = 291
Score = 43.8 bits (104), Expect = 3e-05
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 277 KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
GP VHC AG+GRTG I +++ + + +V
Sbjct: 218 AGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSV 251
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 42.3 bits (99), Expect = 4e-05
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 25/137 (18%)
Query: 174 DVDEMEKYERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRL 233
+++ +E + I+ + P L SG P E Q GV +V+ L
Sbjct: 2 NIESIENLQGIR--ALQQQAPQ--LLSSG----------LPNEQQFSLLKQAGVDVVINL 47
Query: 234 NQKN-----YDERKF-TEAGLDHVDFYFP-DGTAPPNDILCEFIKVCEKYKG-PIAVHCK 285
+ DE K T+AG+D+V Y P D P + + F +++KG + VHC
Sbjct: 48 MPDSSKDAHPDEGKLVTQAGMDYV--YIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHCL 105
Query: 286 AGLGRTGCLIGAYMIKH 302
A R Y +K
Sbjct: 106 AN-YRASAFAYLYQLKQ 121
>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis,
signal transduction, developm protein, hydrolase; 2.40A
{Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*
Length = 307
Score = 43.8 bits (104), Expect = 4e-05
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 256 PDGTAP--PNDILCEFIKVCEKY----KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRT 308
PD P P ++ F++ + PI VHC AG+GR+G I +++ +
Sbjct: 209 PDFGVPNPPQTLV-RFVRAFRDRIGAEQRPIVVHCSAGVGRSGTFITLDRILQQINTSDY 267
Query: 309 V 309
V
Sbjct: 268 V 268
>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP,
tyrosine phosphatase, MEG-1, structural genomics
structural genomics consortium, SGC; 2.45A {Homo
sapiens}
Length = 320
Score = 43.5 bits (103), Expect = 5e-05
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 277 KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
+ P+ VHC AG+GRTG LI + + + V
Sbjct: 237 EEPVVVHCSAGIGRTGVLITMETAMCLIECNQPV 270
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 43.7 bits (103), Expect = 6e-05
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 25/90 (27%)
Query: 227 VQLVVRLNQKNYDERKFTEAGLDHVD----------FYF---PDGTAP--PNDILCEFI- 270
V+ V +Y R+ L V ++F PD P P +L +F+
Sbjct: 385 VRNVKESAAHDYTLRELK---LSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVL-DFLE 440
Query: 271 KVCEKYK-----GPIAVHCKAGLGRTGCLI 295
+V K + GP+ VHC AG+GRTG I
Sbjct: 441 EVHHKQESIMDAGPVVVHCSAGIGRTGTFI 470
Score = 38.7 bits (90), Expect = 0.002
Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 278 GPIAVHCKAG---LGRTGCLIGAY-MIKHVRRRRTVLTKRNQYHQLRWVPGPLE 327
+ + C+ +G +++H ++ V QL+
Sbjct: 168 THVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMV-ETLGTVLQLKQPLNTTR 220
>2f46_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria
meningitidis Z2491}
Length = 156
Score = 41.9 bits (98), Expect = 6e-05
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 239 DERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAY 298
++ +AG+ + F ++ + + P+ +C+ G R L G
Sbjct: 64 IKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQAEYPVLAYCRTGT-RCSLLWGFR 122
Query: 299 MIKH 302
Sbjct: 123 RAAE 126
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 43.4 bits (102), Expect = 6e-05
Identities = 19/128 (14%), Positives = 32/128 (25%), Gaps = 21/128 (16%)
Query: 203 PNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHV----------- 251
TE Y + L + L LN + ++ +
Sbjct: 70 ATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGE 129
Query: 252 --DFYFPDGTAPPND----ILCEFIKVCEKYK---GPIAVHCKAGLGRTGCLIGA-YMIK 301
F + + P D +L + K I V C+ G G L +
Sbjct: 130 PWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTD 189
Query: 302 HVRRRRTV 309
V +
Sbjct: 190 LVEHFKKT 197
Score = 41.8 bits (98), Expect = 2e-04
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 277 KGPIAVHCKAGLGRTGCLI 295
GPI VH AG+GRTG +I
Sbjct: 446 AGPIIVHSSAGIGRTGTII 464
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 43.3 bits (102), Expect = 7e-05
Identities = 19/128 (14%), Positives = 32/128 (25%), Gaps = 21/128 (16%)
Query: 203 PNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHV----------- 251
TE Y + L + L LN + ++ +
Sbjct: 70 ATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGE 129
Query: 252 --DFYFPDGTAPPND----ILCEFIKVCEKYK---GPIAVHCKAGLGRTGCLIG-AYMIK 301
F + + P D +L + K I V C+ G G L +
Sbjct: 130 PWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTD 189
Query: 302 HVRRRRTV 309
V +
Sbjct: 190 LVEHFKKT 197
Score = 42.6 bits (100), Expect = 1e-04
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 25/90 (27%)
Query: 227 VQLVVRLNQKNYDERKFTEAGLDHVD----------FYF---PDGTAP--PNDILCEFIK 271
V + Y R + +D + + PD P P +L F+
Sbjct: 379 VTNCGEHDTTEYKLRTLQ---VSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVL-SFLD 434
Query: 272 VCEKY------KGPIAVHCKAGLGRTGCLI 295
+ GPI VHC AG+GRTG +I
Sbjct: 435 QINQRQESLPHAGPIIVHCSAGIGRTGTII 464
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo
sapiens} SCOP: c.45.1.2
Length = 314
Score = 42.7 bits (101), Expect = 8e-05
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 277 KGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
GP +HC AG+GR+G + + + +
Sbjct: 209 HGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDI 242
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine
phosphatase, lymphoid phosphatase, PEP, LYP, struct
genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A
2qct_A* 2qcj_A* 3olr_A* 3omh_A*
Length = 309
Score = 42.3 bits (100), Expect = 1e-04
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 256 PDGTAP--PNDILCEFI----KVCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHVRR 305
PD P + IL E I E PI +HC AG GRTG + Y ++
Sbjct: 194 PDHDVPSSIDPIL-ELIWDVRCYQEDDSVPICIHCSAGCGRTGVICAIDYTWMLLKD 249
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase,
hypothetical protein; 2.7A {Saccharomyces cerevisiae}
PDB: 2j17_A* 2j16_B
Length = 182
Score = 41.3 bits (97), Expect = 1e-04
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 264 DILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK-----------HVRRRR 307
L I + I +H + GL R+ LI AY++K ++ R
Sbjct: 104 PSLTSIIHAATTKREKILIHAQCGLSRSATLIIAYIMKYHNLSLRHSYDLLKSRA 158
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 42.1 bits (98), Expect = 1e-04
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 9/77 (11%)
Query: 233 LNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCE-------KYKGPIAVHCK 285
++ + + + H+ D D+ V + G VH
Sbjct: 57 VDISSIQAYAKKYSDIQHIRCEIRDF--DAFDLRMRLPAVVGTLYKAVKRNGGVTYVHST 114
Query: 286 AGLGRTGCLIGAYMIKH 302
AG+GR + YM
Sbjct: 115 AGMGRAPAVALTYMFWV 131
>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase,
substrate specificity, residue shift, signaling protein;
HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB:
1gwz_A
Length = 284
Score = 41.9 bits (99), Expect = 1e-04
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 277 KGPIAVHCKAGLGRTGCLI 295
GPI VH AG+GRTG +I
Sbjct: 204 AGPIIVHSSAGIGRTGTII 222
>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11,
tyrosine phosphatase, structural genomics, STR genomics
consortium, SGC, deafness; 1.60A {Homo sapiens} PDB:
3jrl_A* 3mow_A* 3o5x_A*
Length = 316
Score = 41.9 bits (99), Expect = 1e-04
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 256 PDGTAPPNDILCEFI-KVCEKYK-----GPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRT 308
P + +F+ +V K + GP+ VHC AG+GRTG I +I +R +
Sbjct: 216 PSDPGG----VLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGV 271
Query: 309 V 309
Sbjct: 272 D 272
>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine
phosphatase, human, structural genomics, structural
genomics consortium, SGC; 1.50A {Homo sapiens}
Length = 303
Score = 41.9 bits (99), Expect = 2e-04
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 277 KGPIAVHCKAGLGRTGCLI 295
P+ VHC AG GRTG L
Sbjct: 226 PEPLCVHCSAGCGRTGVLC 244
>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein
tyrosine phosphatase precursor, phosph structural
genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A
Length = 301
Score = 41.5 bits (98), Expect = 2e-04
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 256 PDGTAPPNDILCEFI----KVCEKYKGPIAVHCKAGLGRTGCLI 295
P T P L +F K PI VHC G GRTG I
Sbjct: 203 PASTRP----LLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYI 242
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 40.1 bits (94), Expect = 3e-04
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
F+ C++ P+ VH AG+ R+G +I AY++ + +L YH +R
Sbjct: 98 TAFLSKCDQRNEPVLVHSAAGVNRSGAMILAYLMSKNKESLPMLYFLYVYHSMR 151
>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism,
phosphorylation, endoplasmic reticulum, oxidation,
hydrolase, acetylation; 1.5A {Homo sapiens} SCOP:
c.45.1.2 PDB: 2cm3_A 2cmb_A* 2cmc_A* 2cne_A* 3a5j_A
2cma_A 3a5k_A 3eu0_A 3sme_A 2azr_A* 2b07_A* 2h4g_A*
2h4k_A* 2hb1_A* 2qbp_A* 2qbq_A* 2qbr_A* 2qbs_A* 2zmm_A*
2zn7_A* ...
Length = 304
Score = 40.7 bits (96), Expect = 4e-04
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 277 KGPIAVHCKAGLGRTGCLIG----AYMIKHVRRRRTV 309
GP+ VHC AG+GR+G ++ + +V
Sbjct: 214 HGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSV 250
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 38.6 bits (89), Expect = 8e-04
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 213 HPPEFYLDYFLQNGVQLVVRLNQKNYDERK---FTEAGLDHVDFYFPDGTAPPNDILCEF 269
P + G++ ++ L + Y E G+ F P +I
Sbjct: 20 FPDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPDHK 79
Query: 270 IK-----VCEKYKGPIAVHCKAGLGRTGCLIGAYMI 300
I+ + ++ P+ +HCK G RTGCL+G
Sbjct: 80 IRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRK 115
>2q05_A Late protein H1, dual specificity protein phosphatase; structural
genomics, APC7320, P protein structure initiative; HET:
MSE; 2.57A {Vaccinia virus WR}
Length = 195
Score = 38.9 bits (91), Expect = 9e-04
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLR 320
F+ C++ P+ VHC AG+ R+G +I AY++ + +L YH +R
Sbjct: 115 TAFLSKCDQRNEPVLVHCAAGVNRSGAMILAYLMSKNKESLPMLYFLYVYHSMR 168
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine
phosphatase, hydrolase; 1.26A {Homo sapiens}
Length = 144
Score = 37.5 bits (88), Expect = 0.001
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH-----------VRRRR 307
EFI+ ++ G + VH AG+ R ++ +++ V+ R
Sbjct: 71 FEFIEEAKRKDGVVLVHSNAGVSRAAAIVIGFLMNSEQTSFTSAFSLVKNAR 122
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure,
hydrolase; HET: EPE; 2.00A {Homo sapiens}
Length = 188
Score = 38.1 bits (89), Expect = 0.002
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK-----------HVRRRR 307
+ I E +G +HC AG+ R+ L AY++K + R
Sbjct: 87 ADHIHSVEMKQGRTLLHCAAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCR 138
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Mus musculus}
Length = 164
Score = 37.6 bits (88), Expect = 0.002
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK-----------HVRRRR 307
C ++ + G V+CK G R+ + AY+++ V+ R
Sbjct: 79 CAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRHRGHSLDRAFQMVKSAR 130
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase,
nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Length = 144
Score = 37.1 bits (87), Expect = 0.002
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK-----------HVRRRR 307
E+I + +G + VH +AG+ R+ + AY++ V++RR
Sbjct: 71 IEYIDAVKDCRGRVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRR 122
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase;
2.10A {Homo sapiens}
Length = 145
Score = 37.1 bits (87), Expect = 0.002
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH-----------VRRRR 307
+FI +K+ VH K G+ R+ + AY +K V+ RR
Sbjct: 71 YKFISKAKKHGSKCLVHSKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERR 122
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 37.2 bits (87), Expect = 0.002
Identities = 6/52 (11%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH-----------VRRRR 307
+FI + K + + G+ + ++ A+++ + V+
Sbjct: 77 IKFIIRSIQRKEGVLIISGTGVNKAPAIVIAFLMYYQRLSFINAFNKVQGLY 128
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase;
HET: BOG; 2.40A {Homo sapiens}
Length = 160
Score = 37.2 bits (87), Expect = 0.002
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK-----------HVRRRR 307
FI C G VH AG+ R+ ++ AY++ ++ R
Sbjct: 74 INFIHCCRLNGGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATR 125
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase,
dual specifici phosphatase; 1.88A {Homo sapiens}
Length = 190
Score = 37.3 bits (87), Expect = 0.002
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK-----------HVRRRR 307
+ I + G VHC AG+ R+ L AY++K V+ RR
Sbjct: 93 ADKIHSVSRKHGATLVHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWVKARR 144
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A
{Homo sapiens}
Length = 149
Score = 36.8 bits (86), Expect = 0.003
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH-----------VRRRR 307
EFI+ + + +HC+AG+ R+ ++ AY++KH V+ +R
Sbjct: 73 FEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKR 124
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES;
1.50A {Homo sapiens}
Length = 165
Score = 36.8 bits (86), Expect = 0.003
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK-----------HVRRRR 307
+FI C VHC AG+ R+ L+ AY++ VR R
Sbjct: 73 IKFIHECRLRGESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDALHTVRAGR 124
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics,
phosphatase, PSI-2, protein structure initiative; 1.60A
{Homo sapiens}
Length = 154
Score = 36.5 bits (85), Expect = 0.003
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK-----------HVRRRRTV 309
EFI + G + VH AG+ R+ + AY+++ +V+ RR
Sbjct: 80 KEFIDGSLQMGGKVLVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYVQERRFC 133
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded
B-sheet, hydrolase; 2.80A {Homo sapiens}
Length = 177
Score = 36.5 bits (85), Expect = 0.004
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH-----------VRRRR 307
EFI+ + + +HC+AG+ R+ ++ AY++KH V+ +R
Sbjct: 77 FEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKR 128
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase,
structural genomics, PSI-2, protein structure
initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Length = 155
Score = 36.0 bits (84), Expect = 0.005
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH-----------VRRRR 307
EFI + VH AG+ R+ + AY+++ V+R++
Sbjct: 75 IEFIDEALSQNCGVLVHSLAGVSRSVTVTVAYLMQKLHLSLNDAYDLVKRKK 126
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 36.7 bits (85), Expect = 0.005
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH-----------VRRRR 307
+FI + G + VH +AG+ R+ + AY++K +++RR
Sbjct: 73 IDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRR 124
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.010
Identities = 39/207 (18%), Positives = 61/207 (29%), Gaps = 73/207 (35%)
Query: 68 TLYRYCDKLKAKLNSSTLKHKVII-HYTGNNPKKRLNAAFLIGC---YAIIYLKFTPNEI 123
++ +LK KL + H+ I+ HY N PK + + Y
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQY-----------F 473
Query: 124 YKALQANNKVPFIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYER 183
Y I + E+ E + F VF DF F +E+ +
Sbjct: 474 YS---------HIGHHLKNIEHP----ERMTLFRMVF-------LDF-RF----LEQ--K 506
Query: 184 IQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKF 243
I+ +W +L NT +Q +FY Y N ER
Sbjct: 507 IRHDSTAWNASGSIL-----NTLQQ------LKFYKPYICDN----------DPKYERLV 545
Query: 244 TEAGLDHVDFYFPDGT----APPNDIL 266
+DF + D+L
Sbjct: 546 N----AILDFLPKIEENLICSKYTDLL 568
Score = 36.0 bits (82), Expect = 0.017
Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 36/173 (20%)
Query: 164 QHNLFDFDDFDVDEMEKYERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFL 223
H++ DF+ E + Q+ DI + AF + C +
Sbjct: 4 HHHM----DFETGEHQ----YQYKDI---LSVFEDAF-----VDNFDCKDVQDMPKSILS 47
Query: 224 QNGVQLVVRLNQKNYDER------KFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYK 277
+ + + + K+ + V + + L IK + +
Sbjct: 48 KEEIDHI--IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK--TEQR 103
Query: 278 GPIA-----VHCKAGLGRTGCLIGAYMIKHVRRRRTVLTKRNQYHQLRWVPGP 325
P + + L + Y +V R + L R +LR P
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKY---NVSRLQPYLKLRQALLELR--PAK 151
Score = 30.6 bits (68), Expect = 0.98
Identities = 42/316 (13%), Positives = 85/316 (26%), Gaps = 92/316 (29%)
Query: 14 DLDLFTEIQKDRLY-----FATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLST 68
++ E Q+DRLY FA + +R +P + G G
Sbjct: 108 MTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG------ 160
Query: 69 LYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKF----TPNEIY 124
K + + V + K + F I +L +P +
Sbjct: 161 ----SGK-------TWVALDVC-----LSYKVQCKMDF-----KIFWLNLKNCNSPETVL 199
Query: 125 KALQA---NNKVPFIAFQDASDENSKYTLELLECFNAVFKARQHN--LFDFDD------- 172
+ LQ + + D S + + K++ + L +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 173 --FDV--------------DEM--EKYERIQFGDISW-IVPNKLLA-FSGPNTTEQNTCY 212
F++ D + I S + P+++ + +
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--KYLDCRPQD 317
Query: 213 HPPE------FYLDYF---LQNGVQLVVRLNQKNYDE-RKFTEAGLDHVD------FY-- 254
P E L +++G+ N D+ E+ L+ ++ +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 255 ---FPDGTAPPNDILC 267
FP P +L
Sbjct: 378 LSVFPPSAHIPTILLS 393
Score = 28.3 bits (62), Expect = 4.9
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 15 LDLFTEIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLST 68
L+ +++ + Y ER + F E ++ + + D I L
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein,
structural genomics, NPPSFA, project on protein
structural and functional analyses; 1.67A {Homo sapiens}
Length = 151
Score = 34.1 bits (79), Expect = 0.021
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 267 CEFI-KVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH-----------VRRRRTV 309
+FI + + G I VHC G+ R+ L+ AY++ + V+ R +
Sbjct: 74 ADFIHRALSQPGGKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHRGI 128
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual
specificity phosphatase, DUSP13, testis and skeletal
muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Length = 205
Score = 34.7 bits (80), Expect = 0.021
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 12/55 (21%)
Query: 267 CEFIKVCEKYKG-PIAVHCKAGLGRTGCLIGAYMIKH-----------VRRRRTV 309
+I+ + VHC G+ R+ L+ A+++ + V+ R +
Sbjct: 120 ARYIRAALSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHRNI 174
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT; 1.90A
{Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 33.8 bits (78), Expect = 0.033
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 267 CEFIKVCEKYKG-PIAVHCKAGLGRTGCLIGAYMIKH-----------VRRRRTV 309
+FI K + VHC+ G R+ L+ AY++ VR+ R +
Sbjct: 104 ADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREI 158
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Length = 219
Score = 33.9 bits (78), Expect = 0.039
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 12/55 (21%)
Query: 267 CEFIKVC-EKYKGPIAVHCKAGLGRTGCLIGAYMIKH-----------VRRRRTV 309
FI I VHC G R+ L+ AY++ H V + R V
Sbjct: 128 AAFIDRALSDDHSKILVHCVMGRSRSATLVLAYLMIHKDMTLVDAIQQVAKNRCV 182
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate
reduction, oxidored sulfite reduction; HET: SRM; 1.76A
{Desulfovibrio gigas} PDB: 3or2_C* 2v4j_C* 2xsj_C*
Length = 105
Score = 29.2 bits (66), Expect = 0.59
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 252 DFYFPDGTAPPNDILCEFIKVCEKY------KGPIAVHCK-AGLGR-TGCL 294
D+Y +G AP IL + K GP CK AGL + TGC+
Sbjct: 55 DYYKANGIAPMVRILSKNTGFALKEIYELFPSGPGKGACKMAGLPKPTGCV 105
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical
bundle, structural genomics, PSI, protein structure
initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Length = 111
Score = 29.3 bits (66), Expect = 0.66
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 252 DFYFPDGTAPPNDILCEFIKVCEKY------KGPIAVHCK-AGLGR-TGCL 294
+++ GT PP ++ + + GP CK AG + TGC+
Sbjct: 61 EYWETFGTCPPIKMVTKETGFSLEKIYQLFPSGPAHGACKVAGAPKPTGCV 111
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 30.4 bits (68), Expect = 0.76
Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 22/162 (13%)
Query: 124 YKALQANNKVPFIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYER 183
++L +++V I F + + + F A + F ++ +
Sbjct: 28 AESLVESSEVAVIGFFKDVES------DSAKQFLQA--AEAIDDIPFGITSNSDVFSKYQ 79
Query: 184 IQFGDISWIVP--NKLLAFSGPNTTEQNTCYHPPEFYLDYFLQ-NGVQLVVRLNQKNYDE 240
+ + F G T E L F++ N + LV+ ++
Sbjct: 80 LDKDGVVLFKKFDEGRNNFEGEVTKEN----------LLDFIKHNQLPLVIEFTEQTAP- 128
Query: 241 RKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAV 282
+ F H+ + P + + L F E +KG I
Sbjct: 129 KIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILF 170
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 29.9 bits (67), Expect = 1.5
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 117 KFTPNEIYKALQANNKVPFIAFQDASD----ENSKYTLELLECFNAVFKA------RQHN 166
KF+ + +A + P +A D E ++ A + R+
Sbjct: 288 KFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRG 347
Query: 167 LFDFDD 172
FDD
Sbjct: 348 ELGFDD 353
>2b81_A Luciferase-like monooxygenase; TIM barrel, structural genomics,
PSI, protein structure INIT midwest center for
structural genomics, MCSG; HET: MES; 2.50A {Bacillus
cereus}
Length = 323
Score = 29.0 bits (65), Expect = 2.2
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 241 RKFTEAGLDHVDFYFPDGTAPPNDILCEF 269
+ G++H+ DG P +++L E
Sbjct: 284 DIYKSIGVNHLFLALFDGQRPADEVLDEL 312
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET:
BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Length = 234
Score = 28.4 bits (64), Expect = 2.5
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 13/52 (25%)
Query: 248 LDHVDF---YFPDGTAPPNDILCEFIKVCEKYKGPIAVH----CKAGLGRTG 292
F Y P+G A + K E Y +A + G+GR
Sbjct: 85 FAAKPFKKSYLPNGLAA------DLAKETEYYDQILAQYPIDLQILGIGRNA 130
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition,
fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis}
PDB: 2bkv_A*
Length = 242
Score = 28.5 bits (64), Expect = 3.0
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 248 LDHVDF-----YFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTG 292
H+D + P+G A + C + G + G+GR G
Sbjct: 89 FQHIDSKPSRHFIPNGNADDLEAECRRYEQLVDSLGDTDIQL-LGIGRNG 137
>1rep_C REPE54, protein (replication initiation protein); replication
initiator, DNA-binding,, replication/DNA complex; HET:
DNA; 2.60A {Escherichia coli} SCOP: a.4.5.10 a.4.5.10
PDB: 2z9o_A*
Length = 251
Score = 28.1 bits (62), Expect = 3.5
Identities = 21/176 (11%), Positives = 46/176 (26%), Gaps = 14/176 (7%)
Query: 18 FTEIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCDKLK 77
+ QK LY + + T + C Y FG + + + +
Sbjct: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG----LTSAEASKDIRQAL 86
Query: 78 AKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCY-----AIIYLKFTPNEIYKALQANNK 132
+ + K + + I + + P I + N+
Sbjct: 87 KSFAGKEVVFY-RPEEDAGDEKGYESFPWFIKPAHSPSRGLYSVHINPYLIPFFIGLQNR 145
Query: 133 VPFIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEM----EKYERI 184
+ + + Y + L E K + + E + Y+R+
Sbjct: 146 FTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRM 201
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel, TIM barrel,
oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP:
c.1.16.3
Length = 349
Score = 28.1 bits (63), Expect = 4.5
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 241 RKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEK 275
+ +AG+ V P G + I++ +
Sbjct: 312 EELLKAGVTQVVVGSPIGPDKE-----KAIELVGQ 341
>2ffg_A YKUJ; structural genomics, PSI, protein structure initiative,
northeast structural genomics consortium, unknown
function; 2.31A {Bacillus subtilis} SCOP: d.317.1.1
Length = 87
Score = 26.0 bits (57), Expect = 5.3
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 163 RQHNLFDFDDFDVDEMEKYERIQF 186
+ N + FD+ D+ +E +E +Q
Sbjct: 57 EKPNTYPFDNIDMVSIEIFELLQL 80
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural
genomics, protein structure initiative; 2.04A
{Bacteroides vulgatus atcc 8482}
Length = 320
Score = 27.3 bits (61), Expect = 6.3
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 241 RKFTEAGLDHVDFYFPD--GTAPPNDILCEFIKVCEKYKGPIAVHC 284
K + D D G P ++ +V + P+ H
Sbjct: 150 LKAIDKIADLF--CMVDSFGGITPKEVKNLLKEVRKYTHVPVGFHG 193
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic
effects, aldose-ketose isomerase multiple conformers,
isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP:
c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A
1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Length = 266
Score = 26.9 bits (60), Expect = 9.3
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 248 LDHVD-----FYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTG 292
DHVD +G AP D C + + G I + G+G G
Sbjct: 94 FDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFM-GGVGNDG 142
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A
{Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A*
1ss9_A*
Length = 311
Score = 27.1 bits (60), Expect = 9.4
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 56 NFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNN 97
NF + + ++T+ + HY G
Sbjct: 208 NFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPA 249
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 27.0 bits (59), Expect = 9.5
Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 121 NEIYKALQANNKVPFIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEK 180
+ + ++ N + +D +E N F++R + +F D+ +E+ +
Sbjct: 157 EILLQVMENNRDDLVVILAGYADR-----MENFFQSNPGFRSRIAHHIEFPDYSDEELFE 211
Query: 181 YERIQFGDISW 191
D ++
Sbjct: 212 IAGHMLDDQNY 222
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.444
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,195,467
Number of extensions: 308416
Number of successful extensions: 783
Number of sequences better than 10.0: 1
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 109
Length of query: 328
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 234
Effective length of database: 4,077,219
Effective search space: 954069246
Effective search space used: 954069246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.5 bits)