RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3113
(328 letters)
>d1ohea1 c.45.1.1 (A:42-198) Proline directed phosphatase CDC14b2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 157
Score = 168 bits (427), Expect = 1e-52
Identities = 62/152 (40%), Positives = 92/152 (60%), Gaps = 3/152 (1%)
Query: 20 EIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCDKLKAK 79
DRL FA S + + +H+F D Y NF+ DFGP+ L+ +YRYC K+ K
Sbjct: 9 LDITDRLCFAILYS--RPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKK 66
Query: 80 LNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAFQ 139
L S T+ K I+H+TG++ +K+ NAAFL+GCY +IYL TP E Y+ L +I F+
Sbjct: 67 LKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIFGET-SYIPFR 125
Query: 140 DASDENSKYTLELLECFNAVFKARQHNLFDFD 171
DA+ + + + LL+CF+AV KA Q+ +F+
Sbjct: 126 DAAYGSCNFYITLLDCFHAVKKAMQYGFLNFN 157
>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 182
Score = 132 bits (334), Expect = 1e-38
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 14/149 (9%)
Query: 173 FDVDEMEKYERIQFGDISWIVPNKLLAFSGPNTT---EQNTCYHPPEFYLDYFLQNGVQL 229
F++DE E YE+ + GD++WI+P++ +AF GP++ E H PE Y+ YF + V
Sbjct: 2 FNLDEYEHYEKAENGDLNWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTT 61
Query: 230 VVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLG 289
++RLN++ YD ++FT+AG DH D +F DG+ P + I+ EF+ +CE +G IAVH KAGLG
Sbjct: 62 IIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGAIAVHSKAGLG 121
Query: 290 RTGCLIGAYM-----------IKHVRRRR 307
RTG LI Y+ I VR R
Sbjct: 122 RTGTLIACYIMKHYRMTAAETIAWVRICR 150
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 194
Score = 84.4 bits (208), Expect = 4e-20
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 15/129 (11%)
Query: 189 ISWIVPNKLLAFSGP-----NTTEQNTCYHPPEFYLDYFLQNGVQL--VVRLN--QKNYD 239
V + L ++ P +Y V++ +V L + YD
Sbjct: 12 RGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMSLLVDLTNTSRFYD 71
Query: 240 ERKFTEAGLDHVDFYFPD-GTAPPNDILCEFIKVCEKY-----KGPIAVHCKAGLGRTGC 293
+ G+ ++ G P + FI++CE++ I VHC G RTG
Sbjct: 72 RNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERSPPELIGVHCTHGFNRTGF 131
Query: 294 LIGAYMIKH 302
LI A++++
Sbjct: 132 LICAFLVEK 140
>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten
(Pten tumor suppressor), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 174
Score = 83.9 bits (207), Expect = 4e-20
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 27/157 (17%)
Query: 188 DISWIVPNKLLAFSGPNTTEQNTCYHPPEF----YLDYFLQNGVQLVVRLNQKNYDERKF 243
D+++I PN ++A P + Y +LD +N ++ +++YD KF
Sbjct: 11 DLTYIYPN-IIAMGFPAERLEGV-YRNNIDDVVRFLDSKHKNHYKIYNLCAERHYDTAKF 68
Query: 244 TEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY-----KGPIAVHCKAGLGRTGCLIGAY 298
+ F D P +++ F + +++ A+HCKAG GRTG +I AY
Sbjct: 69 ---NCRVAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAY 125
Query: 299 MIKH------------VRRRRTVLTKRNQ-YHQLRWV 322
++ RT K Q R+V
Sbjct: 126 LLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYV 162
>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human
(Homo sapiens), pr-1 [TaxId: 9606]}
Length = 152
Score = 73.2 bits (179), Expect = 2e-16
Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 196 KLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYF 255
+ L P +++ + GV +VR+ + YD + G+ +D+ F
Sbjct: 10 RFLITHNPTN-------ATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF 62
Query: 256 PDGTAPPNDILCEFIKVCEKY-----KGPIAVHCKAGLGRTGCLIGAYMIKH-------- 302
DG P N I+ +++ + + IAVHC AGLGR L+ +I+
Sbjct: 63 DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAV 122
Query: 303 --VRRRRTVLTKRNQYHQLR 320
+R++R Q L
Sbjct: 123 QFIRQKRRGAFNSKQLLYLE 142
>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 176
Score = 62.0 bits (150), Expect = 3e-12
Identities = 22/163 (13%), Positives = 46/163 (28%), Gaps = 32/163 (19%)
Query: 189 ISWIVPNKL-----LAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQK------- 236
ISW+ +++ L + + + G+Q + +
Sbjct: 5 ISWLSLSRVNCSQFLGLCALPGCKFKDVRRNVQKDTEELKSCGIQDIFVFCTRGELSKYR 64
Query: 237 -NYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY---KGPIAVHCKAGLGRTG 292
+ + G+ DG P CE ++ +H GLGR+
Sbjct: 65 VPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKTLIHSYGGLGRSC 124
Query: 293 CLIGAYMIKH---------------VRRRRTVLTKRNQYHQLR 320
+ ++ +R + T + QY+ L
Sbjct: 125 LVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIK-QYNYLH 166
>d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate
phosphohydrolase (phytase) PhyA {Selenomonas ruminantium
[TaxId: 971]}
Length = 313
Score = 57.7 bits (139), Expect = 3e-10
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 212 YHPPEFYLDYFLQNGVQLVVRLNQKNYDERK-FTEAGLDHVDFYFPDGTAPPNDILCEFI 270
+ + VR QK E++ AG+ + D P + + F+
Sbjct: 144 HKTVYIAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWPTPENIDRFL 203
Query: 271 KVCEKYK--GPIAVHCKAGLGRTGCLIGAY-MIKHVRR 305
+ HC+AG+GRT + M+K+
Sbjct: 204 AFYRTLPQDAWLHFHCEAGVGRTTAFMVMTDMLKNPSV 241
>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 43.6 bits (102), Expect = 6e-06
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 231 VRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGR 290
V N Y + T G+ D + +A + + G + VHC+ G R
Sbjct: 64 VNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSR 123
Query: 291 TGCLIGAYM-----------IKHVRRRRTVLTKRNQYHQLR 320
+ L+ AY+ + VR+ R + QL
Sbjct: 124 SPTLVIAYLMMRQKMDVKSALSIVRQNREIGPNDGFLAQLC 164
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 151
Score = 39.4 bits (91), Expect = 1e-04
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 211 CYHPPEFYLDYFLQNGVQLVVRLNQKNYDE---RKFTEAGLDHVDFYFPDGTAPPNDILC 267
P + G++ ++ L + Y E + G+ F P +I
Sbjct: 18 SGFPDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPD 77
Query: 268 EFIK-----VCEKYKGPIAVHCKAGLGRTGCLIGAYMI 300
I+ + ++ P+ +HCK G RTGCL+G
Sbjct: 78 HKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRK 115
>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 243
Score = 35.4 bits (81), Expect = 0.006
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 15/81 (18%)
Query: 250 HVDFYFPDGTAPPNDILCEFIKVCEKYK------------GPIAVHCKAGLGRTGCLIGA 297
HV + P D L + +HC G+GRTG + A
Sbjct: 139 HVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAA 198
Query: 298 YMIKHVRR---RRTVLTKRNQ 315
++K + R+
Sbjct: 199 LVLKDNPHSNLEQVRADFRDS 219
>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo
sapiens), shp-2 [TaxId: 9606]}
Length = 307
Score = 34.5 bits (78), Expect = 0.012
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 252 DFYFPDGTAPPNDILCEFIKVCEKYK--GPIAVHCKAGLGRTGCLIGAYMI 300
D P D L E E GP+ VHC AG+GRTG I ++
Sbjct: 207 DHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDIL 257
>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic
domain {Yersinia enterocolitica [TaxId: 630]}
Length = 283
Score = 33.6 bits (76), Expect = 0.024
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 277 KGPIAVHCKAGLGRTGCLIGAYMIKHVRRRR-----TVLTKRNQ 315
K +H +AG+GRT LIGA + R + V R Q
Sbjct: 211 KLRPVIHSRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQ 254
>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 288
Score = 32.9 bits (74), Expect = 0.042
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 252 DFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRTV 309
DF P L + +Y G I VHC AG+GRTG + M+ + R V
Sbjct: 194 DFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKV 252
>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1
[TaxId: 9606]}
Length = 145
Score = 31.6 bits (71), Expect = 0.061
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 13/115 (11%)
Query: 219 LDYFLQNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPN-DILCEFIKVCEKYK 277
L G+ V+ ++ + + FI +
Sbjct: 22 LQGLQACGITAVLNVSASCPNHFEGLFRYKSIPVEDNQMVEISAWFQEAIGFIDWVKNSG 81
Query: 278 GPIAVHCKAGLGRTGCLIGAYM-----------IKHVRRRR-TVLTKRNQYHQLR 320
G + VH +AG+ R+ + AY+ V++RR + + QL
Sbjct: 82 GRVLVHSQAGISRSATICLAYLMQSRRVRLDEAFDFVKQRRGVISPNFSFMGQLL 136
>d1rpma_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
mu [TaxId: 9606]}
Length = 278
Score = 32.1 bits (72), Expect = 0.080
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 250 HVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRT 308
D P + + GP+ VHC AG GRTGC I M+ R
Sbjct: 183 WPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGV 242
Query: 309 V 309
V
Sbjct: 243 V 243
>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1
(mkp3) [TaxId: 9606]}
Length = 144
Score = 30.1 bits (67), Expect = 0.18
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 12/66 (18%)
Query: 267 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYM-----------IKHVR-RRRTVLTKRN 314
FI + VH AG+ R+ + AY+ V+ ++ + N
Sbjct: 73 ISFIDEARGKNCGVLVHSLAGISRSVTVTVAYLMQKLNLSMNDAYDIVKMKKSNISPNFN 132
Query: 315 QYHQLR 320
QL
Sbjct: 133 FMGQLL 138
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory
sulfite reductase {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 111
Score = 29.3 bits (66), Expect = 0.20
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 252 DFYFPDGTAPPNDILCEFIKVCEKY------KGPIAVHCK-AGLGR-TGCL 294
+++ GT PP ++ + + GP CK AG + TGC+
Sbjct: 61 EYWETFGTCPPIKMVTKETGFSLEKIYQLFPSGPAHGACKVAGAPKPTGCV 111
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of
dissimilatory sulfite reductase {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 103
Score = 29.3 bits (66), Expect = 0.21
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 252 DFYFPDGTAPPNDILCEFIKVCEKY------KGPIAVHCK-AGLGR-TGCL 294
D+Y +G AP IL + K GP CK AGL + TGC+
Sbjct: 53 DYYKKNGIAPMVRILSKNTGFKLKEVYELFPSGPGKGACKMAGLPKPTGCV 103
>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 133
Score = 28.3 bits (63), Expect = 0.73
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 229 LVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKG 278
L+ + + Y + AG+ + F + ++ + + E +G
Sbjct: 7 LIGEIGPETY--SDYMSAGIPLA-YIFAETAEERKELSDKLKPIAEAQRG 53
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 272
Score = 28.3 bits (62), Expect = 1.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 278 GPIAVHCKAGLGRTGCLI 295
P+ HC AG RTG ++
Sbjct: 151 RPVLTHCFAGKDRTGFVV 168
>d1fpra_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
shp-1 [TaxId: 9606]}
Length = 284
Score = 28.3 bits (62), Expect = 1.3
Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 20/135 (14%)
Query: 186 FGDISWIVPNKLLAFSGPNTTEQNTCYHPPEFYLDYFLQNGVQLVVRLNQKNYDERKFTE 245
F ++W ++++ + + P + G V + + E K
Sbjct: 93 FWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRT 152
Query: 246 AGLDHVD-------------FYFPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCK 285
+ +D +PD P P +L ++ ++ + GPI VH
Sbjct: 153 LQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSS 212
Query: 286 AGLGRTGCLIGAYMI 300
AG+GRTG +I M+
Sbjct: 213 AGIGRTGTIIVIDML 227
>d2ffga1 d.317.1.1 (A:2-79) Hypothetical protein YkuJ {Bacillus
subtilis [TaxId: 1423]}
Length = 78
Score = 25.1 bits (55), Expect = 3.6
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 163 RQHNLFDFDDFDVDEMEKYERIQ 185
+ N + FD+ D+ +E +E +Q
Sbjct: 56 EKPNTYPFDNIDMVSIEIFELLQ 78
>d1wcha_ c.45.1.2 (A:) Tyrosine-protein phosphatase, non-receptor
type 13 (PTPL1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 308
Score = 26.7 bits (58), Expect = 3.6
Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 15/121 (12%)
Query: 204 NTTEQNTCYHPPEFYLDYFLQNG--VQLVVRLNQKNYDERKFTEAGLD----------HV 251
+ Y P + N + LV K + R T + +
Sbjct: 145 GEKIKCQRYWPNILGKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNF 204
Query: 252 DFYFPDGTAPPNDILCEFIKVCEKYK--GPIAVHCKAGLGRTGCLIGA-YMIKHVRRRRT 308
+ T D L FI GPI HC AG+GR+G LI ++ + +
Sbjct: 205 TAWPDHDTPSQPDDLLTFISYMRHIHRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLD 264
Query: 309 V 309
Sbjct: 265 F 265
>d1lvaa4 a.4.5.35 (A:575-634) C-terminal fragment of elongation
factor SelB {Moorella thermoacetica [TaxId: 1525]}
Length = 60
Score = 24.7 bits (54), Expect = 4.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 122 EIYKALQANNKVPFIAFQDASDENSKYTLELLECFNAV 159
E+ K L + +DA + KY L LLE + V
Sbjct: 8 EVIKNLASTGPFGLAEARDALGSSRKYVLPLLEYLDQV 45
>d1lara2 c.45.1.2 (A:1628-1876) RPTP Lar {Human (Homo sapiens)
[TaxId: 9606]}
Length = 249
Score = 26.3 bits (57), Expect = 5.7
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 248 LDHVDFYFPDGTAPPNDILCEFIKVCEKY--KGPIAVHCKAGLGRTGCLIGA-YMIKHVR 304
D + P D + + K E++ GPI VHC AG+GRTG I +++ +R
Sbjct: 148 TDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMR 207
Query: 305 RRRTV 309
V
Sbjct: 208 YEGVV 212
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 134
Score = 25.3 bits (55), Expect = 7.6
Identities = 8/60 (13%), Positives = 20/60 (33%)
Query: 70 YRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQA 129
Y+ ++ K + +++ +GN K G ++ + + I L
Sbjct: 66 YQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSD 125
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 25.5 bits (55), Expect = 9.4
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 121 NEIYKALQANNKVPFIAFQDASDENSKYTLELLECFNA 158
++ AL A K FI + A D + T E L +
Sbjct: 5 SDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDG 42
>d1q2ya_ d.108.1.1 (A:) Probable acetyltransferase YjcF {Bacillus
subtilis [TaxId: 1423]}
Length = 140
Score = 24.8 bits (53), Expect = 9.9
Identities = 15/147 (10%), Positives = 40/147 (27%), Gaps = 21/147 (14%)
Query: 114 IYLKFTPNEIYKALQANNKVPFIAFQDAS-----DENSKYTLELLECFNAVFKARQHNLF 168
+ ++ A +V F+ Q+ DE + ++
Sbjct: 3 AVIAKNEEQLKDAFYVREEV-FVKEQNVPAEEEIDELENESEHIVVYDGEKPVGAGRWRM 61
Query: 169 DFDDFDVDEMEKYERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPE---FYLDYFLQN 225
++ + + + + I+ L + + FY
Sbjct: 62 KDGYGKLERICVLKSHRSAGVGGIIMKALEKAAADGGASGFILNAQTQAVPFYK------ 115
Query: 226 GVQLVVRLNQKNYDERKFTEAGLDHVD 252
+ + E++F +AG+ H+
Sbjct: 116 ------KHGYRVLSEKEFLDAGIPHLQ 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.444
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,304,301
Number of extensions: 63138
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 38
Length of query: 328
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,226,816
Effective search space: 296889472
Effective search space used: 296889472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)