BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3114
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 117/179 (65%), Gaps = 12/179 (6%)
Query: 2 EKYERIQFGDISWIVPNKLLAFSGPNT---TEQNTCYHPPEKEWSENMSRKIHHLKCPNG 58
E YE+ + GD++WI+P++ +AF GP++ E H PE I + K N
Sbjct: 168 EHYEKAENGDLNWIIPDRFIAFCGPHSRARLESGYHQHSPET--------YIQYFKNHN- 218
Query: 59 VQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKA 118
V ++RLN++ YD ++FT+AG DH D +F DG+ P + I+ EF+ +CE +G IAVHCKA
Sbjct: 219 VTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGAIAVHCKA 278
Query: 119 GLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQHVLQNVGDKYR 177
GLGRTG LI Y++KHY+M+A ETIAW+RICRPG VIG QQ +L Q L GD +R
Sbjct: 279 GLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQFLVMKQTNLWLEGDYFR 337
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 116/179 (64%), Gaps = 12/179 (6%)
Query: 2 EKYERIQFGDISWIVPNKLLAFSGPNT---TEQNTCYHPPEKEWSENMSRKIHHLKCPNG 58
E YE+ + GD++WI+P++ +AF GP++ E H PE I + K N
Sbjct: 168 EHYEKAENGDLNWIIPDRFIAFCGPHSRARLESGYHQHSPET--------YIQYFKNHN- 218
Query: 59 VQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKA 118
V ++RLN++ YD ++FT+AG DH D +F DG+ P + I+ EF+ +CE +G IAVH KA
Sbjct: 219 VTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGAIAVHSKA 278
Query: 119 GLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQHVLQNVGDKYR 177
GLGRTG LI Y++KHY+M+A ETIAW+RICRPG VIG QQ +L Q L GD +R
Sbjct: 279 GLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQFLVMKQTNLWLEGDYFR 337
>pdb|2YSB|A Chain A, Solution Structure Of The First Ww Domain From The Mouse
Salvador Homolog 1 Protein (Sav1)
Length = 49
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 36/40 (90%)
Query: 318 EASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEK 357
+ ++LPLPPGWS+D+T+RGRKYYIDHNT TTHWSHPLE
Sbjct: 5 SSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLES 44
>pdb|2DWV|A Chain A, Solution Structure Of The Second Ww Domain From Mouse
Salvador Homolog 1 Protein (Mww45)
pdb|2DWV|B Chain B, Solution Structure Of The Second Ww Domain From Mouse
Salvador Homolog 1 Protein (Mww45)
Length = 49
Score = 61.6 bits (148), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/41 (58%), Positives = 32/41 (78%)
Query: 352 SHPLEKEGLPTGWERIENPEYGVYFVNHITRQAQYEHPCAP 392
S PLE+EGLP GWER+E+ E+G Y+V+H ++AQY HP P
Sbjct: 6 SGPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGP 46
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
LPPGW + YY+DH K + HP
Sbjct: 14 LPPGWERVESSEFGTYYVDHTNKRAQYRHP 43
>pdb|1R6H|A Chain A, Solution Structure Of Human Prl-3
Length = 172
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 58 GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFI-----KVCEKYKGPI 112
G VVR+ + YD+ + G+ VD+ F DG PP ++ +++ K CE +
Sbjct: 44 GATTVVRVCEVTYDKTPLEKDGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCV 103
Query: 113 AVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLK 163
AVHC AGLGR L+ +I+ M + I ++R R G + Q +L+
Sbjct: 104 AVHCVAGLGRAPVLVALALIES-GMKYEDAIQFIRQKRRGAINSKQLTYLE 153
>pdb|1V3A|A Chain A, Structure Of Human Prl-3, The Phosphatase Associated With
Cancer Metastasis
Length = 173
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 58 GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFI-----KVCEKYKGPI 112
G VVR+ + YD+ + G+ VD+ F DG PP ++ +++ K CE +
Sbjct: 41 GATTVVRVCEVTYDKTPLEKDGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCV 100
Query: 113 AVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLK 163
AVHC AGLGR L+ +I+ M + I ++R R G + Q +L+
Sbjct: 101 AVHCVAGLGRAPVLVALALIES-GMKYEDAIQFIRQKRRGAINSKQLTYLE 150
>pdb|2ZAJ|A Chain A, Solution Structure Of The Short-Isoform Of The Second Ww
Domain From The Human Membrane-Associated Guanylate
Kinase, Ww And Pdz Domain-Containing Protein 1 (Magi-1)
Length = 49
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHPCAP 392
LP GWE+IE+P YG+Y+V+HI R+ QYE+P P
Sbjct: 14 LPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP 46
>pdb|2YSE|A Chain A, Solution Structure Of The Second Ww Domain From The Human
Membrane-Associated Guanylate Kinase, Ww And Pdz Domain-
Containing Protein 1. Magi-1
Length = 60
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHPC 390
LP GWE+IE+P YG+Y+V+HI R+ QYE+P
Sbjct: 14 LPAGWEKIEDPVYGIYYVDHINRKTQYENPV 44
>pdb|3S4O|A Chain A, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
pdb|3S4O|B Chain B, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
Length = 167
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 58 GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCE-----KYKGP- 111
GV+ +VR+ YD G+D + F DG P +L ++K+ + + + P
Sbjct: 47 GVRHLVRVCGPTYDATLVKSRGIDVHSWPFDDGAPPTRAVLDSWLKLLDTELARQQEDPS 106
Query: 112 -----IAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWL 162
I VHC AGLGR L+ ++++ +SA++ IA +R R G + Q W+
Sbjct: 107 VPPPTIGVHCVAGLGRAPILVALALVEYGNVSALDAIALIREKRKGAINQTQXHWI 162
>pdb|2I6I|A Chain A, Crystal Structures Of The Archaeal Sulfolobus Ptp-Fold
Phosphatase
pdb|2I6J|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphate Ion
pdb|2I6M|A Chain A, Crystal Structure Of The Complexes Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Tungstate
pdb|3RO1|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Terpyridine
Platinum(Ii)
Length = 161
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 41 EWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCE 100
EW + +++ L P ++ K+Y + GL + PDG P +
Sbjct: 23 EWRKEGVKRV--LVLPEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPDGGVPSDSQFLT 80
Query: 101 FIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVI----- 155
+K K VHC G+GRTG ++ +Y+I + I +R+ RPG V
Sbjct: 81 IMKWLLSEKEGNLVHCVGGIGRTGTILASYLILTEGLEVESAIDEVRLVRPGAVQTYEQE 140
Query: 156 -------GVQQDWLKDV 165
G+++ WLK++
Sbjct: 141 MFLLRVEGMRKSWLKNI 157
>pdb|4ERC|A Chain A, Structure Of Vhz Bound To Metavanadate
pdb|4ERC|B Chain B, Structure Of Vhz Bound To Metavanadate
Length = 150
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 75 FTEAGLDHVD---------FYFPDGTAPPNDILCEFIKVCEKYKG---PIAVHCKAGLGR 122
TE G H D PD P D + F+++ ++ + VHC G GR
Sbjct: 42 LTERGPPHSDSCPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGR 101
Query: 123 TGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQD 160
TG ++ Y++K ++A + IA +R RPG + +Q+
Sbjct: 102 TGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQE 139
>pdb|3RZ2|A Chain A, Crystal Of Prl-1 Complexed With Peptide
pdb|3RZ2|B Chain B, Crystal Of Prl-1 Complexed With Peptide
Length = 189
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 58 GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEF-----IKVCEKYKGPI 112
GV +VR+ + YD + G+ +D+ F DG P N I+ ++ IK E+ I
Sbjct: 61 GVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCI 120
Query: 113 AVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLK 163
AVHC AGLGR L+ +I+ M + + ++R R G Q +L+
Sbjct: 121 AVHCVAGLGRAPVLVALALIEG-GMKYEDAVQFIRQKRRGAFNSKQLLYLE 170
>pdb|2ESB|A Chain A, Crystal Structure Of Human Dusp18
Length = 188
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 94 PNDILCEF-------IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWM 146
PN LC+F I E +G +HC AG+ R+ L AY++K++ MS ++ W
Sbjct: 75 PNSRLCDFFDPIADHIHSVEMKQGRTLLHCAAGVSRSAALCLAYLMKYHAMSLLDAHTWT 134
Query: 147 RICRP 151
+ CRP
Sbjct: 135 KSCRP 139
>pdb|1X24|A Chain A, Prl-1 (Ptp4a)
pdb|1X24|B Chain B, Prl-1 (Ptp4a)
Length = 180
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 43 SENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEF- 101
+ +++ I LK GV +VR+ + YD + G+ +D+ F DG P N I+ ++
Sbjct: 47 NATLNKFIEELK-KYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWL 105
Query: 102 ----IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGV 157
IK E+ IAVHC AGLGR L+ +I+ M + + ++R R G
Sbjct: 106 SLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEG-GMKYEDAVQFIRQKRRGAFNSK 164
Query: 158 QQDWLK 163
Q +L+
Sbjct: 165 QLLYLE 170
>pdb|2IMG|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
23 From Homo Sapiens In Complex With Ligand Malate Ion
Length = 151
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 75 FTEAGLDHVD---------FYFPDGTAPPNDILCEFIKVCEKYKG---PIAVHCKAGLGR 122
TE G H D PD P D + F+++ ++ + VHC G GR
Sbjct: 43 LTERGPPHSDSCPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGR 102
Query: 123 TGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQD 160
TG + Y++K ++A + IA +R RPG + +Q+
Sbjct: 103 TGTXLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQE 140
>pdb|1ZCK|A Chain A, Native Structure Prl-1 (Ptp4a1)
pdb|1ZCK|B Chain B, Native Structure Prl-1 (Ptp4a1)
pdb|1ZCK|C Chain C, Native Structure Prl-1 (Ptp4a1)
Length = 154
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 58 GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEF-----IKVCEKYKGPI 112
GV +VR+ + YD + G+ +D+ F DG P N I+ ++ IK E+ I
Sbjct: 35 GVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCI 94
Query: 113 AVHCKAGLGRTGCLIGAYMIK 133
AVHC AGLGR L+ +I+
Sbjct: 95 AVHCVAGLGRAPVLVALALIE 115
>pdb|1RXD|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
pdb|1RXD|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
pdb|1RXD|C Chain C, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
Length = 159
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 58 GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEF-----IKVCEKYKGPI 112
GV +VR+ + YD + G+ +D+ F DG P N I+ ++ IK E+ I
Sbjct: 40 GVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCI 99
Query: 113 AVHCKAGLGRTGCLIGAYMIK 133
AVHC AGLGR L+ +I+
Sbjct: 100 AVHCVAGLGRAPVLVALALIE 120
>pdb|2C46|A Chain A, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|B Chain B, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|C Chain C, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|D Chain D, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
Length = 241
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 46 MSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPD-GTAPPNDILCEFIKV 104
+S + LK G+ + + + YD + G+ ++ G P + FI++
Sbjct: 72 LSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRL 131
Query: 105 CEKY--KGP---IAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQ 159
CE++ + P I VHC G RTG LI A++++ S +A RP + +
Sbjct: 132 CERFNERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGI--YKG 189
Query: 160 DWLKDV 165
D+LK++
Sbjct: 190 DYLKEL 195
>pdb|1TK7|A Chain A, Nmr Structure Of Ww Domains (Ww3-4) From Suppressor Of
Deltex
Length = 88
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP--------LEKEG-LPTGWERIENPEYGV 374
PLP GW R Y+++H +TT W P L EG LP GWE
Sbjct: 12 PLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGER 71
Query: 375 YFVNHITRQAQYEHP 389
+FV+H TR+ +E P
Sbjct: 72 FFVDHNTRRTTFEDP 86
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 312 PSQQLHEAS--DELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
P Q E S +E PLPPGW I +T G ++++DHNT+ T + P
Sbjct: 42 PRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 86
>pdb|1YN9|A Chain A, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|B Chain B, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|C Chain C, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
Length = 169
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 66 NQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY--KGP---IAVHCKAGL 120
K YD F AGL + P T PP I+ EFI +++ K P + VHC G+
Sbjct: 65 TSKYYDGVHFLRAGLLYKKIQVPGQTLPPESIVQEFIDTVKEFTEKCPGMLVGVHCTHGI 124
Query: 121 GRTGCLIGAYMIKHYKMSAMETI 143
RTG ++ Y++ ++ E I
Sbjct: 125 NRTGYMVCRYLMHTLGIAPQEAI 147
>pdb|2DXP|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphopeptides
A-(P)y-R
pdb|2I6O|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Phosphopeptides
N-g-(p)y-k-n
pdb|2I6P|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Pnpp
Length = 161
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
Query: 41 EWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCE 100
EW + +++ L P ++ K+Y + GL + PDG P +
Sbjct: 23 EWRKEGVKRV--LVLPEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPDGGVPSDSQFLT 80
Query: 101 FIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVI----- 155
+K K VH G+GRTG ++ +Y+I + I +R+ RPG V
Sbjct: 81 IMKWLLSEKEGNLVHSVGGIGRTGTILASYLILTEGLEVESAIDEVRLVRPGAVQTYEQE 140
Query: 156 -------GVQQDWLKDV 165
G+++ WLK++
Sbjct: 141 MFLLRVEGMRKSWLKNI 157
>pdb|1ZCL|A Chain A, Prl-1 C104s Mutant In Complex With Sulfate
pdb|1ZCL|B Chain B, Prl-1 C104s Mutant In Complex With Sulfate
Length = 180
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 45 NMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEF--- 101
+++ I LK GV +VR+ + YD + G+ +D+ F DG P N I+ ++
Sbjct: 49 TLNKFIEELK-KYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSL 107
Query: 102 --IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQ 159
IK E+ IAVH AGLGR L+ +I+ M + + ++R R G Q
Sbjct: 108 VKIKFREEPGCCIAVHSVAGLGRAPVLVALALIEG-GMKYEDAVQFIRQKRRGAFNSKQL 166
Query: 160 DWLK 163
+L+
Sbjct: 167 LYLE 170
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
AS PLP GW + T R Y++DHNTKTT W P
Sbjct: 3 ASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDP 38
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHPCAPHYIYQ 397
LP+GWE VYFV+H T+ ++ P P + Q
Sbjct: 9 LPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQ 46
>pdb|2LB1|A Chain A, Structure Of The Second Domain Of Human Smurf1 In Complex
With A Human Smad1 Derived Peptide
Length = 35
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLPPGW + T+ GR Y++DHN +TT ++ P
Sbjct: 3 PLPPGWEVRSTVSGRIYFVDHNNRTTQFTDP 33
>pdb|2DJY|A Chain A, Solution Structure Of Smurf2 Ww3 Domain-Smad7 Py Peptide
Complex
Length = 42
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLPPGW I T GR Y++DHN +TT ++ P
Sbjct: 7 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 37
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 354 PLEKEGLPTGWERIENPEYG-VYFVNHITRQAQYEHP 389
PL LP GWE I N G VYFV+H R Q+ P
Sbjct: 2 PLGSGPLPPGWE-IRNTATGRVYFVDHNNRTTQFTDP 37
>pdb|2LTX|A Chain A, Smurf1 Ww2 Domain In Complex With A Smad7 Derived Peptide
Length = 35
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLPPGW + T+ GR Y++DHN +TT ++ P
Sbjct: 2 PLPPGWEVRSTVSGRIYFVDHNNRTTQFTDP 32
>pdb|2LTZ|A Chain A, Smurf2 Ww3 Domain In Complex With A Smad7 Derived Peptide
Length = 37
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLPPGW I T GR Y++DHN +TT ++ P
Sbjct: 2 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 32
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 360 LPTGWERIENPEYG-VYFVNHITRQAQYEHP 389
LP GWE I N G VYFV+H R Q+ P
Sbjct: 3 LPPGWE-IRNTATGRVYFVDHNNRTTQFTDP 32
>pdb|1XM2|A Chain A, Crystal Structure Of Human Prl-1
pdb|1XM2|B Chain B, Crystal Structure Of Human Prl-1
pdb|1XM2|C Chain C, Crystal Structure Of Human Prl-1
pdb|1XM2|D Chain D, Crystal Structure Of Human Prl-1
pdb|1XM2|E Chain E, Crystal Structure Of Human Prl-1
pdb|1XM2|F Chain F, Crystal Structure Of Human Prl-1
Length = 173
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 46 MSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEF---- 101
+++ I LK GV +VR+ + YD + G+ +D+ F DG P N I+ ++
Sbjct: 30 LNKFIEELK-KYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLV 88
Query: 102 -IKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIK 133
IK E+ IAVH AGLGR L+ +I+
Sbjct: 89 KIKFREEPGCCIAVHSVAGLGRAPVLVALALIE 121
>pdb|2YSD|A Chain A, Solution Structure Of The First Ww Domain From The Human
Membrane-Associated Guanylate Kinase, Ww And Pdz Domain-
Containing Protein 1. Magi-1
Length = 57
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 319 ASDEL-PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
A D L PLP W + +T G Y+IDHNTKTT W P
Sbjct: 8 AEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDP 44
>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of
Mouse Mrna Capping Enzyme
Length = 210
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 46 MSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPD-GTAPPNDILCEFIKV 104
+S + LK + + + + YD + G+ ++ G P + FI++
Sbjct: 50 LSNYLKSLKVKMSLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRL 109
Query: 105 CEKY--KGP---IAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQ 159
CE++ + P I VHC G RTG LI A++++ S +A RP + +
Sbjct: 110 CERFNERSPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGI--YKG 167
Query: 160 DWLKDV 165
D+LK++
Sbjct: 168 DYLKEL 173
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 91 TAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAY 130
+A D L IK C PI VHC AG+GRTG LIGAY
Sbjct: 205 SAASFDELLSVIKNCVT-TSPILVHCSAGIGRTGTLIGAY 243
>pdb|2JMF|A Chain A, Solution Structure Of The Su(Dx) Ww4- Notch Py Peptide
Complex
Length = 53
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 313 SQQLHEAS--DELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
S + H S +E PLPPGW I +T G ++++DHNT+ T + P
Sbjct: 5 SPEFHMVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 48
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 84 DFYFPDGTAPPNDIL--CEFIKVCEKYKGPIAVHCKAGLGRTGCL----IGAYMIKHYK- 136
D PD P ++ E ++ + +GP+ VHC AG+GRTGC IG +K
Sbjct: 195 DHKTPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGV 254
Query: 137 MSAMETIAWMRICRPGCV 154
+ A+ + +R+ R G V
Sbjct: 255 VDALSIVCQLRVDRGGMV 272
>pdb|2KXQ|A Chain A, Solution Structure Of Smurf2 Ww2 And Ww3 Bound To Smad7 Py
Motif Containing Peptide
Length = 90
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLPPGW I T GR Y++DHN +TT ++ P
Sbjct: 55 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 85
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHP----------LEKEG-LPTGWERIENPEYG 373
LP G+ T +G+ Y++ T + W P E+ G LP GWE I N G
Sbjct: 10 LPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWE-IRNTATG 68
Query: 374 -VYFVNHITRQAQYEHP 389
VYFV+H R Q+ P
Sbjct: 69 RVYFVDHNNRTTQFTDP 85
>pdb|1WR7|A Chain A, Solution Structure Of The Third Ww Domain Of Nedd4-2
Length = 41
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
LPPGW + GR ++IDHNTKTT W P
Sbjct: 9 LPPGWEMRIAPNGRPFFIDHNTKTTTWEDP 38
>pdb|2OP7|A Chain A, Ww4
Length = 39
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 321 DELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+E PLP GW I +T G +Y++DHNT+TT + P
Sbjct: 1 NEEPLPEGWEIRYTREGVRYFVDHNTRTTTFKDP 34
>pdb|2A8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Phosphatase Receptor, Type R
Length = 283
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 84 DFYFPDGTAPPNDIL--CEFIKVCEKYKGPIAVHCKAGLGRTGCL----IGAYMIKHYK- 136
D PD P ++ E ++ + +GP+ VHC AG+GRTGC IG +K
Sbjct: 182 DHKTPDSAQPLLQLMLDVEEDRLASQGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGV 241
Query: 137 MSAMETIAWMRICRPGCV 154
+ A+ + +R+ R G V
Sbjct: 242 VDALSIVCQLRMDRGGMV 259
>pdb|3F99|A Chain A, W354f Yersinia Enterocolitica Ptpase Apo Form
pdb|3F9A|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Tungstate
pdb|3F9B|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Divanadate
Length = 306
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 25/102 (24%)
Query: 87 FPDGTAPPNDILCEFIKVCEKY----------KGPIAV----------HCKAGLGRTGCL 126
FPD TA +++ + ++ KG AV HC+AG+GRT L
Sbjct: 192 FPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL 251
Query: 127 IGAYMI---KHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165
IGA + ++ ++S + ++ MR+ R G I VQ+D DV
Sbjct: 252 IGAMCMNDSRNSQLSVEDMVSQMRVQRNG--IMVQKDEQLDV 291
>pdb|2GP0|A Chain A, Heptp Catalytic Domain (Residues 44-339), S225d Mutant
Length = 309
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 14/163 (8%)
Query: 9 FGDISWIVPNKLLAFSGPNTTEQNTCYH--PPEKEWSENMSRKIHHLK-CPNGV--QLVV 63
F ++ W L+ + C H P E+E +I +K CP QL +
Sbjct: 128 FWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETYGPFQIRIQDMKECPEYTVRQLTI 187
Query: 64 RLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLG 121
+ ++ D + + D P+ P ++ E + E + GPI VHC AG+G
Sbjct: 188 QYQEERRDVKHILFSAWP--DHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIG 245
Query: 122 RTGCL----IGAYMIK-HYKMSAMETIAWMRICRPGCVIGVQQ 159
RTGC IG +K ++ + + +R+ R G + +Q
Sbjct: 246 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQ 288
>pdb|2A3K|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Ptpn7 (Heptp, Hematopoietic Protein
Tyrosine Phosphatase)
Length = 296
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 14/163 (8%)
Query: 9 FGDISWIVPNKLLAFSGPNTTEQNTCYH--PPEKEWSENMSRKIHHLK-CPNGVQLVVRL 65
F ++ W L+ + C H P E+E +I +K CP V +L
Sbjct: 117 FWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETYGPFQIRIQDMKECPE--YTVRQL 174
Query: 66 NQKNYDERKFTEAGLDHV--DFYFPDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLG 121
+ +ER+ + L D P+ P ++ E + E + GPI VHC AG+G
Sbjct: 175 TIQYQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIG 234
Query: 122 RTGCL----IGAYMIK-HYKMSAMETIAWMRICRPGCVIGVQQ 159
RTGC IG +K ++ + + +R+ R G + +Q
Sbjct: 235 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQ 277
>pdb|1ZC0|A Chain A, Crystal Structure Of Human Hematopoietic Tyrosine
Phosphatase (heptp) Catalytic Domain
Length = 309
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 14/163 (8%)
Query: 9 FGDISWIVPNKLLAFSGPNTTEQNTCYH--PPEKEWSENMSRKIHHLK-CPNGVQLVVRL 65
F ++ W L+ + C H P E+E +I +K CP V +L
Sbjct: 128 FWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETYGPFQIRIQDMKECPE--YTVRQL 185
Query: 66 NQKNYDERKFTEAGLDHV--DFYFPDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLG 121
+ +ER+ + L D P+ P ++ E + E + GPI VHC AG+G
Sbjct: 186 TIQYQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIG 245
Query: 122 RTGCL----IGAYMIK-HYKMSAMETIAWMRICRPGCVIGVQQ 159
RTGC IG +K ++ + + +R+ R G + +Q
Sbjct: 246 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQ 288
>pdb|3O4S|A Chain A, Crystal Structure Of Heptp With A Closed Wpd Loop And An
Ordered E- Loop
pdb|3O4T|A Chain A, Crystal Structure Of Heptp With An Open Wpd Loop And
Partially Depleted Active Site
pdb|3O4U|A Chain A, Crystal Structure Of Heptp With An Atypically Open Wpd
Loop
Length = 308
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 14/163 (8%)
Query: 9 FGDISWIVPNKLLAFSGPNTTEQNTCYH--PPEKEWSENMSRKIHHLK-CPNGVQLVVRL 65
F ++ W L+ + C H P E+E +I +K CP V +L
Sbjct: 127 FWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETYGPFQIRIQDMKECPE--YTVRQL 184
Query: 66 NQKNYDERKFTEAGLDHV--DFYFPDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLG 121
+ +ER+ + L D P+ P ++ E + E + GPI VHC AG+G
Sbjct: 185 TIQYQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIG 244
Query: 122 RTGCL----IGAYMIK-HYKMSAMETIAWMRICRPGCVIGVQQ 159
RTGC IG +K ++ + + +R+ R G + +Q
Sbjct: 245 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQ 287
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 17/148 (11%)
Query: 16 VPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKF 75
V + ++A S P++ Q + + P E S + K P+ ++ +++ YDE KF
Sbjct: 25 VTDHVIAMSFPSSGRQ-SLFRNPIGEVS-----RFFKTKHPDKFRIYNLCSERGYDETKF 78
Query: 76 TEAGLDHV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGA 129
+HV D P L +FI + + IA+HCKAG GRTG L+ +
Sbjct: 79 D----NHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKAGKGRTGTLVSS 134
Query: 130 YMIKHYKM-SAMETIAWMRICRPGCVIG 156
++++ K +A E + + R +G
Sbjct: 135 WLLEDGKFDTAKEALEYFGSRRTDFEVG 162
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
Length = 302
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 111 PIAVHCKAGLGRTGCLIGAY-MIKHYKMSAM------ETIAWMRICRPGCVIGVQQDWL 162
P+ VHC AG+GRTG LIGAY + H + + + ++ MR R G V ++Q ++
Sbjct: 221 PVVVHCSAGIGRTGTLIGAYAALTHLERGTLTDTTVYDVVSAMRRQRFGMVQRMEQYFV 279
>pdb|1PA9|A Chain A, Yersinia Protein-Tyrosine Phosphatase Complexed With Pncs
(Yop51,Pasteurella X,Ptpase,Yop51delta162) (Catalytic
Domain, Residues 163-468) Mutant With Cys 235 Replaced
By Arg (C235r)
Length = 284
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 114 VHCKAGLGRTGCLIGAYMI---KHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165
+HC+AG+GRT LIGA + ++ ++S + ++ MR+ R G I VQ+D DV
Sbjct: 217 IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNG--IMVQKDEQLDV 269
>pdb|1XXV|A Chain A, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
pdb|1XXV|B Chain B, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
Length = 306
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 114 VHCKAGLGRTGCLIGAYMI---KHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165
+HC+AG+GRT LIGA + ++ ++S + ++ MR+ R G I VQ+D DV
Sbjct: 239 IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNG--IMVQKDEQLDV 291
>pdb|1YPT|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|1YPT|B Chain B, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|3BLU|A Chain A, Crystal Structure Yoph Complexed With Inhibitor Pvs
pdb|3BLT|A Chain A, Crystal Structures Of Yoph Complexed With Pvsn And Pvs,
Inhibitors Of Yoph Which Co-Valent Bind To Cys Of Active
Site
Length = 305
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 114 VHCKAGLGRTGCLIGAYMI---KHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165
+HC+AG+GRT LIGA + ++ ++S + ++ MR+ R G I VQ+D DV
Sbjct: 238 IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNG--IMVQKDEQLDV 290
>pdb|1QZ0|A Chain A, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|1QZ0|B Chain B, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|2I42|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
Complexed With Vanadate, A Transition State Analogue
pdb|1YTN|A Chain A, Hydrolase
pdb|1YTW|A Chain A, Yersinia Ptpase Complexed With Tungstate
pdb|2Y2F|A Chain A, Crystal Structure Of Yersinia Pestis Yoph In Complex With
An Aminooxy-Containing Platform Compound For Inhibitor
Design
pdb|2YDU|A Chain A, Crystal Structure Of Yoph In Complex With
3-(1,1-Dioxido-3-Oxoisothiazolidin-5-Yl)benzaldeyde
Length = 306
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 114 VHCKAGLGRTGCLIGAYMI---KHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165
+HC+AG+GRT LIGA + ++ ++S + ++ MR+ R G I VQ+D DV
Sbjct: 239 IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNG--IMVQKDEQLDV 291
>pdb|3BM8|A Chain A, Crystal Structure Of Yoph Mutant D356a Complexed With
Irreversible Inhibitor Pvsn
Length = 305
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 114 VHCKAGLGRTGCLIGAYMI---KHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165
+HC+AG+GRT LIGA + ++ ++S + ++ MR+ R G I VQ+D DV
Sbjct: 238 IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNG--IMVQKDEQLDV 290
>pdb|3U96|A Chain A, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
pdb|3U96|B Chain B, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
Length = 306
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 114 VHCKAGLGRTGCLIGAYMI---KHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165
+HC+AG+GRT LIGA + ++ ++S + ++ MR+ R G I VQ+D DV
Sbjct: 239 IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNG--IMVQKDEQLDV 291
>pdb|2QDC|A Chain A, Crystal Structure Of The Heptp Catalytic Domain D236a
Mutant
Length = 309
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 22/167 (13%)
Query: 9 FGDISWIVPNKLLAFSGPNTTEQNTCYH--PPEKEWSENMSRKIHHLK-CPNGVQLVVRL 65
F ++ W L+ + C H P E+E +I +K CP + VR
Sbjct: 128 FWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETYGPFQIRIQDMKECP---EYTVRQ 184
Query: 66 NQKNYDERKFTEAGLDHVDFYF------PDGTAPPNDILCEFIKVCE--KYKGPIAVHCK 117
Y E + + + H+ F P+ P ++ E + E + GPI VHC
Sbjct: 185 LTIQYQEERRS---VKHILFSAWPAHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCS 241
Query: 118 AGLGRTGCL----IGAYMIK-HYKMSAMETIAWMRICRPGCVIGVQQ 159
AG+GRTGC IG +K ++ + + +R+ R G + +Q
Sbjct: 242 AGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQ 288
>pdb|2LAJ|A Chain A, Third Ww Domain Of Human Nedd4l In Complex With Doubly
Phosphorylated Human Smad3 Derived Peptide
Length = 44
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
LPPGW + GR ++ DHNTKTT W P
Sbjct: 8 LPPGWEMRIAPNGRPFFYDHNTKTTTWEDP 37
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 16 VPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKF 75
V + ++A S P++ Q + + P E S + K P+ ++ +++ YDE KF
Sbjct: 37 VTDHVIAMSFPSSGRQ-SLFRNPIGEVS-----RFFKTKHPDKFRIYNLCSERGYDETKF 90
Query: 76 TEAGLDHV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGA 129
+HV D P L +FI + + IA+HCK G GRTG L+ +
Sbjct: 91 D----NHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSS 146
Query: 130 YMIKHYKM-SAMETIAWMRICRPGCVIG 156
++++ K +A E + + R +G
Sbjct: 147 WLLEDGKFDTAKEALEYFGSRRTDFEVG 174
>pdb|2KPZ|A Chain A, Human Nedd4 3rd Ww Domain Complex With The Human T-Cell
Leukemia Virus 1 Gag-Pro Poliprotein Derived Peptide
Sdpqipppyvep
pdb|2KQ0|A Chain A, Human Nedd4 3rd Ww Domain Complex With Ebola Zaire Virus
Matrix Protein Vp40 Derived Peptide Ilptappeymea
Length = 49
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
LP GW + GR ++IDHNTKTT W P
Sbjct: 13 LPKGWEVRHAPNGRPFFIDHNTKTTTWEDP 42
>pdb|1I9T|A Chain A, Crystal Structure Of The Oxidized Rna Triphosphatase
Domain Of Mouse Mrna Capping Enzyme
Length = 210
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 46 MSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPD-GTAPPNDILCEFIKV 104
+S + LK + + + + YD + G+ ++ G P + FI++
Sbjct: 50 LSNYLKSLKVKMSLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRL 109
Query: 105 CEKY--KGP---IAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQ 159
CE++ + P I VH G RTG LI A++++ S +A RP + +
Sbjct: 110 CERFNERSPPELIGVHXTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGI--YKG 167
Query: 160 DWLKDV 165
D+LK++
Sbjct: 168 DYLKEL 173
>pdb|2YSG|A Chain A, Solution Structure Of The Ww Domain From The Human
Syntaxin- Binding Protein 4
Length = 40
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHPL 355
LP GW +T G KY+I+H T+TT W HP+
Sbjct: 8 LPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 359 GLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
GLP GWE + YF+NH+T+ + HP
Sbjct: 7 GLPYGWEEAYTADGIKYFINHVTQTTSWIHP 37
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 16 VPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKF 75
V + ++A S P++ Q + + P E S + K P+ ++ +++ YDE KF
Sbjct: 25 VTDHVIAMSFPSSGRQ-SLFRNPIGEVS-----RFFKTKHPDKFRIYNLCSERGYDETKF 78
Query: 76 TEAGLDHV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGA 129
+HV D P L +FI + + IA+HCK G GRTG L+ +
Sbjct: 79 D----NHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSS 134
Query: 130 YMIKHYKM-SAMETIAWMRICRPGCVIG 156
++++ K +A E + + R +G
Sbjct: 135 WLLEDGKFDTAKEALEYFGSRRTDFEVG 162
>pdb|2KYK|A Chain A, The Sandwich Region Between Two Lmp2a Py Motif Regulates
The Interaction Between Aip4ww2domain And Py Motif
Length = 39
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLPPGW GR YY+DH T+TT W P
Sbjct: 6 PLPPGWERRVDNMGRIYYVDHFTRTTTWQRP 36
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHPC 390
LP GWER + +Y+V+H TR ++ P
Sbjct: 7 LPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 320 SDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+DE LPPGW + GR YY +H T + W P
Sbjct: 2 ADEEKLPPGWEKRMSADGRVYYFNHITNASQWERP 36
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 356 EKEGLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
++E LP GWE+ + + VY+ NHIT +Q+E P
Sbjct: 3 DEEKLPPGWEKRMSADGRVYYFNHITNASQWERP 36
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 352 SHPLEKEGLPTGWERIENPEYG-VYFVNHITRQAQYEHP 389
SH ++E LP GWE+ + G VY+ NHIT +Q+E P
Sbjct: 2 SHMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
Score = 35.4 bits (80), Expect = 0.082, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 320 SDELPLPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
+DE LPPGW + GR YY +H T + W P
Sbjct: 5 ADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
>pdb|2P4D|A Chain A, Structure-Assisted Discovery Of Variola Major H1
Phosphatase Inhibitors
Length = 172
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 86 YFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSA 139
YF D TA F+ C++ P+ VHC AG+ R+G I AY+ K S+
Sbjct: 89 YFDDVTA--------FLSKCDQRNEPVLVHCVAGVNRSGAXILAYLXSKNKESS 134
>pdb|1I5H|W Chain W, Solution Structure Of The Rnedd4 Wwiii Domain-Renac Bp2
Peptide Complex
Length = 50
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 318 EASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+++D PLPPGW GR ++I+HN K T W P
Sbjct: 5 DSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDP 41
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE + + V+F+NH ++ Q+E P
Sbjct: 12 LPPGWEERTHTDGRVFFINHNIKKTQWEDP 41
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 16 VPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKF 75
V + ++A S P++ Q + + P E S + K P+ ++ +++ YDE KF
Sbjct: 15 VTDHVIAMSFPSSGRQ-SLFRNPIGEVS-----RFFKTKHPDKFRIYNLCSERGYDETKF 68
Query: 76 TEAGLDHV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGA 129
+HV D P L +FI + + IA+HCK G GRTG L+ +
Sbjct: 69 D----NHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSS 124
Query: 130 YMIKHYKM-SAMETIAWMRICRPGCVIG 156
++++ K +A E + + R +G
Sbjct: 125 WLLEDGKFDTAKEALEYFGSRRTDFEVG 152
>pdb|1YGR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGU|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
pdb|1YGU|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
Length = 610
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 51 HHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFY-FPDGTAPPNDILCEFIK-----V 104
H +CP+ ++ +LN N E K T + H+ F +PD P + L ++
Sbjct: 162 QHKRCPD--YIIQKLNIVNKKE-KATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAF 218
Query: 105 CEKYKGPIAVHCKAGLGRTGCLIG 128
+ GPI VH AG+GRTG IG
Sbjct: 219 SNFFSGPIVVHSSAGVGRTGTYIG 242
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 85 FYFPD----GTAPPNDILCEFIKVCEKYK------GPIAVHCKAGLGRTGCLIGAYMI-- 132
F F D G + +FI K K GPI+VHC AG+GRTG I ++
Sbjct: 478 FQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLE 537
Query: 133 -KHYK--MSAMETIAWMRICRPGCV 154
Y+ + +T+ +R RP V
Sbjct: 538 RMRYEGVVDIFQTVKMLRTQRPAMV 562
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 110 GPIAVHCKAGLGRTGCLI 127
GPI VHC AG+GRTGC I
Sbjct: 222 GPIVVHCSAGVGRTGCFI 239
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 87 FPDGTAPPNDI-LCEFIKVCEK----YKGPIAVHCKAGLGRTGCLI-----GAYMIKHYK 136
+PD P I + +F+K + + GPI VHC AG+GRTG I A M K
Sbjct: 196 WPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIVVHCSAGVGRTGTFIVIDAMMAMMHAEQK 255
Query: 137 MSAMETIAWMRICRPGCV 154
+ E ++ +R RP V
Sbjct: 256 VDVFEFVSRIRNQRPQMV 273
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 111 PIAVHCKAGLGRTGCLIG-AYMIKHYK----MSAMETIAWMRICRPGCVIGVQQ 159
PI VHC AG GRTG I + +++ K + + + +R+ RP V ++Q
Sbjct: 520 PITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQ 573
>pdb|2JO9|A Chain A, Mouse Itch 3rd Ww Domain Complex With The Epstein-Barr
Virus Latent Membrane Protein 2a Derived Peptide
Eeppppyed
pdb|1YIU|A Chain A, Itch E3 Ubiquitin Ligase Ww3 Domain
Length = 37
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLPPGW GR Y+++HNT+ T W P
Sbjct: 5 PLPPGWEKRTDSNGRVYFVNHNTRITQWEDP 35
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE+ + VYFVNH TR Q+E P
Sbjct: 6 LPPGWEKRTDSNGRVYFVNHNTRITQWEDP 35
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 110 GPIAVHCKAGLGRTGCLI 127
GPI VHC AG+GRTGC I
Sbjct: 224 GPIVVHCSAGVGRTGCFI 241
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 85 FYFPD----GTAPPNDILCEFIKVCEKYK------GPIAVHCKAGLGRTGCLIGAYMI-- 132
F F D G + +FI K K GPI+VHC AG+GRTG I ++
Sbjct: 480 FQFTDWPEQGAPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLE 539
Query: 133 -KHYK--MSAMETIAWMRICRPGCV 154
Y+ + +T+ +R RP V
Sbjct: 540 RMRYEGVVDIFQTVKVLRTQRPAMV 564
>pdb|3RGO|A Chain A, Crystal Structure Of Ptpmt1
Length = 157
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 18/118 (15%)
Query: 44 ENMSRKIHHLKCPNGVQLVVRLNQKNYDER-------KFTEAGLDHVDFYFPDGTAPPND 96
+NM+R+ L V+ V+ +N++ Y+ R ++ +AG++ + D T P
Sbjct: 17 KNMTRR---LVLDENVRGVITMNEE-YETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTL 72
Query: 97 I-LCEFIKVCEKYKGP---IAVHCKAGLGRTGCLIGAYMIKHYKMS---AMETIAWMR 147
L + ++ KY+ + VHCKAG R+ ++ AY+I+ + S A+E IA +R
Sbjct: 73 ANLHKGVQFALKYQALGQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIR 130
>pdb|2EZ5|W Chain W, Solution Structure Of The Dnedd4 Ww3 Domain- Comm Lpsy
Peptide Complex
Length = 46
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+ +E PLPP WS+ GR ++IDH ++ T W P
Sbjct: 5 SGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDP 40
>pdb|1K9Q|A Chain A, Yap65 Ww Domain Complexed To N-(N-Octyl)-Gpppy-Nh2
pdb|1K9R|A Chain A, Yap65 Ww Domain Complexed To Acetyl-Plppy
Length = 40
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 318 EASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
E D++PLP GW + T G++Y+++H +TT W P
Sbjct: 2 EIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDP 38
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE + YF+NHI + ++ P
Sbjct: 9 LPAGWEMAKTSSGQRYFLNHIDQTTTWQDP 38
>pdb|1K5R|A Chain A, Yap65 Ww Domain S24-Amino-Ethylsulfanyl-Acetic Acid Mutant
Length = 41
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 318 EASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
E D++PLP GW + T G++Y+++H +TT W P
Sbjct: 2 EIPDDVPLPAGWEMAKTSXGQRYFLNHIDQTTTWQDP 38
>pdb|1WR3|A Chain A, Solution Structure Of The First Ww Domain Of Nedd4-2
Length = 36
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLPPGW GR YY++HN ++T W P
Sbjct: 4 PLPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 34
>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
Length = 195
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 86 YFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS 138
YF D TA F+ C++ P+ VHC AG+ R+G I AY+ K S
Sbjct: 110 YFDDVTA--------FLSKCDQRNEPVLVHCAAGVNRSGAXILAYLXSKNKES 154
>pdb|2WGP|A Chain A, Crystal Structure Of Human Dual Specificity Phosphatase 14
pdb|2WGP|B Chain B, Crystal Structure Of Human Dual Specificity Phosphatase 14
Length = 190
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 96 DILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
D + + I + G VHC AG+ R+ L AY++K + + +E W++ RP
Sbjct: 90 DTVADKIHSVSRKHGATLVHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWVKARRP 145
>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
Length = 312
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 91 TAPPNDILCEFIKVCE----KYKGPIAVHCKAGLGRTGCLIGA-YMIKHYK 136
TA + + +F+++ K KGP+ +HC AG+GRTG I ++++H +
Sbjct: 203 TANAAESILQFVQMVRQKSVKSKGPMIIHCSAGVGRTGTFIALDWLLQHIR 253
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 87 FPDGTAP--PNDILCEF--IKVCEKY-KGPIAVHCKAGLGRTGCLI 127
+PD P P IL +K C GP+ VHC AG+GRTGC I
Sbjct: 182 WPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFI 227
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 85 FYFPD----GTAPPNDILCEFIKVCEKYK------GPIAVHCKAGLGRTGCLIGAYMI-- 132
F F D G + +FI K K GPI VHC AG+GRTG I ++
Sbjct: 466 FQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLE 525
Query: 133 -KHYK--MSAMETIAWMRICRPGCV 154
Y+ + +T+ +R RP V
Sbjct: 526 RMRYEGVVDMFQTVKTLRTQRPAMV 550
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 16 VPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKF 75
V + ++A S P++ Q + + P E S + K P+ ++ +++ YDE KF
Sbjct: 30 VTDHVIAMSFPSSGRQ-SLFRNPIGEVS-----RFFKTKHPDKFRIYNLCSERGYDETKF 83
Query: 76 TEAGLDHV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGA 129
+HV D P L +FI + + IA+H K G GRTG L+ +
Sbjct: 84 D----NHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSS 139
Query: 130 YMIKHYKM-SAMETIAWMRICRPGCVIGVQ 158
++++ K +A E + + R GV+
Sbjct: 140 WLLEDGKFDTAKEALEYFGSRRTDVFQGVE 169
>pdb|2HVL|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant
pdb|2QDP|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant Crystallized In Ammonium Acetate
Length = 309
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 14/163 (8%)
Query: 9 FGDISWIVPNKLLAFSGPNTTEQNTCYH--PPEKEWSENMSRKIHHLK-CPNGVQLVVRL 65
F ++ W L+ + C H P E+E +I +K CP V +L
Sbjct: 128 FWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETYGPFQIRIQDMKECPE--YTVRQL 185
Query: 66 NQKNYDERKFTEAGLDHV--DFYFPDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLG 121
+ +ER+ + L D P+ P ++ E + E + GPI VH AG+G
Sbjct: 186 TIQYQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSSAGIG 245
Query: 122 RTGCL----IGAYMIK-HYKMSAMETIAWMRICRPGCVIGVQQ 159
RTGC IG +K ++ + + +R+ R G + +Q
Sbjct: 246 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQ 288
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 113 AVHCKAGLGRTGCLIGAYMIKHYK-MSAMETIAWMRICR----PGCVIGVQQDWLKDVQH 167
A+HCKAG GRTG +I AY++ K + A E + + R G I Q+ ++ +
Sbjct: 115 AIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYYYSY 174
Query: 168 VLQNVGDKYRSI 179
+L+N D YR +
Sbjct: 175 LLKNHLD-YRPV 185
>pdb|2RF6|A Chain A, Crystal Structure Of The Vaccinia Virus Dual-Specificity
Phosphatase Vh1
pdb|3CM3|A Chain A, High Resolution Crystal Structure Of The Vaccinia Virus
Dual-Specificity Phosphatase Vh1
Length = 176
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 86 YFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS 138
YF D TA F+ C++ P+ VH AG+ R+G +I AY++ K S
Sbjct: 93 YFDDVTA--------FLSKCDQRNEPVLVHSAAGVNRSGAMILAYLMSKNKES 137
>pdb|2QDM|A Chain A, Crystal Structure Of The Heptp Catalytic Domain
C270sD236AQ314A Mutant
Length = 309
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 30 EQNTCYHPPEKEWSENMSRKIHHLK-CPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYF- 87
E+ Y P E+E +I +K CP + VR Y E + + + H+ F
Sbjct: 151 EKCVHYWPTEEETYGPFQIRIQDMKECP---EYTVRQLTIQYQEERRS---VKHILFSAW 204
Query: 88 -----PDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLGRTGCL----IGAYMIK-HY 135
P+ P ++ E + E + GPI VH AG+GRTGC IG +K
Sbjct: 205 PAHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSSAGIGRTGCFIATRIGCQQLKARG 264
Query: 136 KMSAMETIAWMRICRPGCVIGVQQ 159
++ + + +R+ R G + +Q
Sbjct: 265 EVDILGIVCQLRLDRGGMIATAEQ 288
>pdb|3D42|A Chain A, Crystal Structure Of Heptp In Complex With A
Monophosphorylated Erk2 Peptide
pdb|3D44|A Chain A, Crystal Structure Of Heptp In Complex With A Dually
Phosphorylated Erk2 Peptide Mimetic
Length = 308
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 14/163 (8%)
Query: 9 FGDISWIVPNKLLAFSGPNTTEQNTCYH--PPEKEWSENMSRKIHHLK-CPNGVQLVVRL 65
F ++ W L+ + C H P E+E +I +K CP V +L
Sbjct: 127 FWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETYGPFQIRIQDMKECPE--YTVRQL 184
Query: 66 NQKNYDERKFTEAGLDHV--DFYFPDGTAPPNDILCEFIKVCE--KYKGPIAVHCKAGLG 121
+ +ER+ + L D P+ P ++ E + E + GPI VH AG+G
Sbjct: 185 TIQYQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSSAGIG 244
Query: 122 RTGCL----IGAYMIK-HYKMSAMETIAWMRICRPGCVIGVQQ 159
RTGC IG +K ++ + + +R+ R G + +Q
Sbjct: 245 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQ 287
>pdb|2BIJ|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 (step, Striatum Enriched Enriched
Phosphatase)
Length = 305
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 17/90 (18%)
Query: 57 NGVQLVVR--LNQKNYDERKFT------EAGLDHVDFY-FPD----GTAPPNDILCEFIK 103
+GV++ V+ ++ ++Y R + E GL H F +PD APP L ++
Sbjct: 162 DGVEITVQKVIHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVE 221
Query: 104 VCEKYKGP----IAVHCKAGLGRTGCLIGA 129
+ +GP I VHC AG+GRTGC I
Sbjct: 222 EAAQQEGPHCAPIIVHCSAGIGRTGCFIAT 251
>pdb|2YSF|A Chain A, Solution Structure Of The Fourth Ww Domain From The Human
E3 Ubiquitin-Protein Ligase Itchy Homolog, Itch
Length = 40
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
LP GW + FT+ G Y++DHN +TT + P
Sbjct: 8 LPEGWEMRFTVDGIPYFVDHNRRTTTYIDP 37
>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In Complex
With A Phosphorylated Ptpy Motif Derived From Human
Smad3
Length = 35
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHPL 355
LP GW +GR YY++HN +TT W+ P+
Sbjct: 2 LPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 32
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 359 GLPTGWERIENPEYGVYFVNHITRQAQYEHPC 390
GLP+GWE ++ + Y+VNH R + P
Sbjct: 1 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 32
>pdb|2LAX|A Chain A, Structure Of First Ww Domain Of Human Yap In Complex With
A Human Smad1 Doubly-Phosphorilated Derived Peptide
Length = 40
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
A +++PLP GW + T G++Y+++H +TT W P
Sbjct: 2 AMEDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDP 37
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 355 LEKEGLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
+E LP GWE + YF+NHI + ++ P
Sbjct: 3 MEDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDP 37
>pdb|1JMQ|A Chain A, Yap65 (L30k Mutant) Ww Domain In Complex With Gtppppytvg
Peptide
Length = 46
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 318 EASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
E D++PLP GW + T G++Y+ +H +TT W P
Sbjct: 2 EIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDP 38
>pdb|1YTS|A Chain A, A Ligand-Induced Conformational Change In The Yersinia
Protein Tyrosine Phosphatase
Length = 278
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 114 VHCKAGLGRTGCLIGAYMI---KHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165
+H +AG+GRT LIGA + ++ ++S + ++ MR+ R G I VQ+D DV
Sbjct: 211 IHSRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNG--IMVQKDEQLDV 263
>pdb|1E0M|A Chain A, Prototype Ww Domain
Length = 37
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 322 ELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+ LPPGW T G+ YY +HNTKT+ W+ P
Sbjct: 1 SMGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDP 33
>pdb|2OUD|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mkp5
Length = 177
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 27/40 (67%)
Query: 112 IAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
+ +HC+AG+ R+ ++ AY++KH +M+ + +++ RP
Sbjct: 90 LLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRP 129
>pdb|1XXP|A Chain A, Yersinia Yoph (Residues 163-468) C403s Binds
Phosphotyrosyl Peptide At Two Sites
pdb|1XXP|B Chain B, Yersinia Yoph (Residues 163-468) C403s Binds
Phosphotyrosyl Peptide At Two Sites
Length = 306
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 114 VHCKAGLGRTGCLIGAYMI---KHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165
+H +AG+GRT LIGA + ++ ++S + ++ MR+ R G I VQ+D DV
Sbjct: 239 IHSRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNG--IMVQKDEQLDV 291
>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2
Length = 36
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHPL 355
LP GW +GR YY++HN +TT W+ P+
Sbjct: 5 LPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 359 GLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
GLP+GWE ++ + Y+VNH R + P
Sbjct: 4 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34
>pdb|1LYV|A Chain A, High-Resolution Structure Of The Catalytically Inactive
Yersinia Tyrosine Phosphatase C403a Mutant In Complex
With Phosphate
Length = 306
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 114 VHCKAGLGRTGCLIGAYMI---KHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165
+H +AG+GRT LIGA + ++ ++S + ++ MR+ R G I VQ+D DV
Sbjct: 239 IHSRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNG--IMVQKDEQLDV 291
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 110 GPIAVHCKAGLGRTGCLI 127
GP+ VHC AG+GRTGC I
Sbjct: 219 GPMVVHCSAGVGRTGCFI 236
>pdb|2OOQ|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptprt
pdb|2OOQ|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptprt
Length = 286
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 110 GPIAVHCKAGLGRTGCLIG 128
GPI VHC AG GRTGC I
Sbjct: 213 GPIVVHCSAGAGRTGCFIA 231
>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived Peptide
Length = 34
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHPL 355
LP GW +GR YY++HN +TT W+ P+
Sbjct: 3 LPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 33
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 359 GLPTGWERIENPEYGVYFVNHITRQAQYEHPCA 391
GLP+GWE ++ + Y+VNH R + P
Sbjct: 2 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIG 34
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 356 EKEGLPTGWE-RIENPEYGVYFVNHITRQAQYEHP 389
++E LP GWE R+ VY+ NHIT AQ+E P
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNAAQWERP 37
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 320 SDELPLPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
+DE LPPGW + GR YY +H T W P
Sbjct: 2 ADEEKLPPGWEKRMSRSSGRVYYFNHITNAAQWERP 37
>pdb|1ZZW|A Chain A, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
pdb|1ZZW|B Chain B, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
Length = 149
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 27/40 (67%)
Query: 112 IAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
+ +HC+AG+ R+ ++ AY++KH +M+ + +++ RP
Sbjct: 86 LLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRP 125
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 65 LNQKNYDERKFTEAG-LDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRT 123
NQ+ + R T+ + D PD ++ D +C + P+ VHC AG+GRT
Sbjct: 192 FNQEKNESRPLTQIQYIAWPDHGVPDDSSDFLDFVCHVRNKRAGKEEPVVVHCSAGIGRT 251
Query: 124 GCLI 127
G LI
Sbjct: 252 GVLI 255
>pdb|2JOC|A Chain A, Mouse Itch 3rd Domain Phosphorylated In T30
Length = 37
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLPPGW GR Y+++HNT+ W P
Sbjct: 5 PLPPGWEKRTDSNGRVYFVNHNTRIXQWEDP 35
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE+ + VYFVNH TR Q+E P
Sbjct: 6 LPPGWEKRTDSNGRVYFVNHNTRIXQWEDP 35
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 317 HEASDELPLPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
H +DE LPPGW + GR YY +H T + W P
Sbjct: 3 HGMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 41
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 356 EKEGLPTGWERIENPEYG-VYFVNHITRQAQYEHP 389
++E LP GWE+ + G VY+ NHIT +Q+E P
Sbjct: 7 DEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 41
>pdb|2LAW|A Chain A, Structure Of The Second Ww Domain From Human Yap In
Complex With A Human Smad1 Derived Peptide
Length = 38
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 322 ELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
E PLP GW T G YYI+H KTT W P
Sbjct: 4 EGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDP 36
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 87 FPDGTAP--PNDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMIKHY---- 135
+PD P P +L ++ ++ + GPI VHC AG+GRTG +I M+
Sbjct: 417 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTK 476
Query: 136 ----KMSAMETIAWMRICRPGCV 154
+ +TI +R R G V
Sbjct: 477 GLDCDIDIQKTIQMVRAQRSGMV 499
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 317 HEASDELPLPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
H +DE LPPGW + GR YY +H T + W P
Sbjct: 3 HGMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 41
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 356 EKEGLPTGWERIENPEYG-VYFVNHITRQAQYEHP 389
++E LP GWE+ + G VY+ NHIT +Q+E P
Sbjct: 7 DEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 41
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
By Group Iv Ww Domains
Length = 167
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 317 HEASDELPLPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
H +DE LPPGW + GR YY +H T + W P
Sbjct: 3 HGMADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 41
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 356 EKEGLPTGWE-RIENPEYGVYFVNHITRQAQYEHP 389
++E LP GWE R+ VY+ NHIT +Q+E P
Sbjct: 7 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 41
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 91 TAPPNDILCEFIKVCE----KYKGPIAVHCKAGLGRTGCLIG 128
TA + + +F+ + K KGP+ +HC AG+GRTG I
Sbjct: 196 TANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIA 237
>pdb|1GWZ|A Chain A, Crystal Structure Of The Catalytic Domain Of The Protein
Tyrosine Phosphatase Shp-1
Length = 299
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 87 FPDGTAP--PNDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMIKHY---- 135
+PD P P +L ++ ++ + GPI VHC AG+GRTG +I M+
Sbjct: 175 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTK 234
Query: 136 ----KMSAMETIAWMRICRPGCV 154
+ +TI +R R G V
Sbjct: 235 GLDCDIDIQKTIQMVRAQRSGMV 257
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 91 TAPPNDILCEFIKVCE----KYKGPIAVHCKAGLGRTGCLIG 128
TA + + +F+ + K KGP+ +HC AG+GRTG I
Sbjct: 194 TANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIA 235
>pdb|4GS0|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GS0|B Chain B, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
Length = 308
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 87 FPDGTAP--PNDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMIKHY---- 135
+PD P P +L ++ ++ + GPI VHC AG+GRTG +I M+
Sbjct: 197 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTK 256
Query: 136 ----KMSAMETIAWMRICRPGCV 154
+ +TI +R R G V
Sbjct: 257 GLDCDIDIQKTIQMVRAQRSGMV 279
>pdb|3V0D|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0D|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0F|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0F|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0G|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|C Chain C, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|D Chain D, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0H|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
pdb|3V0H|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
Length = 339
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 16 VPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKF 75
V + ++A S P++ Q + + P E S + K P+ ++ +++ YDE KF
Sbjct: 30 VTDHVIAMSFPSSGRQ-SLFRNPIGEVS-----RFFKTKHPDKFRIYNLCSERGYDETKF 83
Query: 76 TEAGLDHV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGA 129
+HV D P L +FI + + IA+H K G GRTG L+ +
Sbjct: 84 D----NHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSS 139
Query: 130 YMIKHYKM-SAMETIAWMRICRPGCVIG 156
++++ K +A E + + R +G
Sbjct: 140 WLLEDGKFDTAKEALEYFGSRRTDFEVG 167
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 356 EKEGLPTGWERIENPEYG-VYFVNHITRQAQYEHP 389
++E LP GWE+ + G VY+ NHIT +Q+E P
Sbjct: 3 DEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 37
Score = 35.4 bits (80), Expect = 0.082, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 320 SDELPLPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
+DE LPPGW + GR YY +H T + W P
Sbjct: 2 ADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 37
>pdb|1WCH|A Chain A, Crystal Structure Of Ptpl1 Human Tyrosine Phosphatase
Mutated In Colorectal Cancer - Evidence For A Second
Phosphotyrosine Substrate Recognition Pocket
Length = 315
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 80 LDHVDFY-FPDGTAP--PNDILCEFIKVCEKY--KGPIAVHCKAGLGRTGCLIGAYMI-- 132
+ H++F +PD P P+D+L FI GPI HC AG+GR+G LI ++
Sbjct: 206 ISHLNFTAWPDHDTPSQPDDLLT-FISYMRHIHRSGPIITHCSAGIGRSGTLICIDVVLG 264
Query: 133 ---KHYKMSAMETIAWMRICRPGCV 154
+ + + MR+ R G V
Sbjct: 265 LISQDLDFDISDLVRCMRLQRHGMV 289
>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Kappa At 1.95a Resolution
Length = 313
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 14/18 (77%)
Query: 110 GPIAVHCKAGLGRTGCLI 127
GPI VHC AG GRTGC I
Sbjct: 235 GPIVVHCSAGAGRTGCYI 252
>pdb|2DMV|A Chain A, Solution Structure Of The Second Ww Domain Of Itchy
Homolog E3 Ubiquitin Protein Ligase (Itch)
Length = 43
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
LPPGW GR YY+DH K T W P
Sbjct: 8 LPPGWEQRVDQHGRVYYVDHVEKRTTWDRP 37
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 359 GLPTGWERIENPEYGVYFVNHITRQAQYEHPCAP 392
GLP GWE+ + VY+V+H+ ++ ++ P P
Sbjct: 7 GLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40
>pdb|1RPM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
pdb|1RPM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
Length = 278
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 110 GPIAVHCKAGLGRTGCLI 127
GP+ VHC AG GRTGC I
Sbjct: 211 GPLVVHCSAGAGRTGCFI 228
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 85 FYF---PD-GTAPPNDILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIG----AY 130
F+F PD G D+L F + Y + PI VHC AG+GRTG I Y
Sbjct: 203 FHFTSAPDHGVPDTTDLLINFRYLVRDYMKQSPPESPILVHCSAGVGRTGTFIAIDRLIY 262
Query: 131 MIKHYKMSAMETIAW-MRICRPGCV 154
I++ + I + +R+ RP V
Sbjct: 263 QIENENTVDVYGIVYDLRMHRPLMV 287
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 356 EKEGLPTGWE-RIENPEYGVYFVNHITRQAQYEHP 389
++E LP GWE R+ VY+ NHIT +Q+E P
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYANHITNASQWERP 37
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 320 SDELPLPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
+DE LPPGW + GR YY +H T + W P
Sbjct: 2 ADEEKLPPGWEKRMSRSSGRVYYANHITNASQWERP 37
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 87 FPD-GTAPPNDILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIG----AYMIKHY 135
+PD G D+L F + Y + PI VHC AG+GRTG I Y I++
Sbjct: 208 WPDHGVPDTTDLLINFRYLVRDYMKQIPPESPILVHCSAGVGRTGTFIAIDRLIYQIENE 267
Query: 136 KMSAMETIAW-MRICRPGCV 154
+ I + +R+ RP V
Sbjct: 268 NTVDVYGIVYDLRMHRPLMV 287
>pdb|3V0E|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576(C363s)
Length = 324
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 16 VPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKF 75
V + ++A S P++ Q + + P E S + K P+ ++ +++ YDE KF
Sbjct: 15 VTDHVIAMSFPSSGRQ-SLFRNPIGEVS-----RFFKTKHPDKFRIYNLCSERGYDETKF 68
Query: 76 TEAGLDHV-DFYFPDGTAPPNDILCEFIKVCEKYKGP-----IAVHCKAGLGRTGCLIGA 129
+HV D P L +FI + + IA+H K G GRTG L+ +
Sbjct: 69 D----NHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSS 124
Query: 130 YMIKHYKM-SAMETIAWMRICRPGCVIG 156
++++ K +A E + + R +G
Sbjct: 125 WLLEDGKFDTAKEALEYFGSRRTDFEVG 152
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 356 EKEGLPTGWE-RIENPEYGVYFVNHITRQAQYEHP 389
++E LP GWE R+ VY+ NHIT +Q+E P
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
Score = 35.4 bits (80), Expect = 0.080, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 320 SDELPLPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
+DE LPPGW + GR YY +H T + W P
Sbjct: 2 ADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 36.2 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 320 SDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+DE LPPGW + GR YY +H T + W P
Sbjct: 2 ADEEKLPPGWEKRMS-NGRVYYFNHITNASQWERP 35
Score = 35.4 bits (80), Expect = 0.081, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 356 EKEGLPTGWE-RIENPEYGVYFVNHITRQAQYEHP 389
++E LP GWE R+ N VY+ NHIT +Q+E P
Sbjct: 3 DEEKLPPGWEKRMSNGR--VYYFNHITNASQWERP 35
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 356 EKEGLPTGWE-RIENPEYGVYFVNHITRQAQYEHP 389
++E LP GWE R+ VY+ NHIT +Q+E P
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
Score = 35.4 bits (80), Expect = 0.082, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 320 SDELPLPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
+DE LPPGW + GR YY +H T + W P
Sbjct: 2 ADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 36.2 bits (82), Expect = 0.043, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 356 EKEGLPTGWE-RIENPEYGVYFVNHITRQAQYEHP 389
++E LP GWE R+ VY+ NHIT +Q+E P
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
Score = 35.4 bits (80), Expect = 0.083, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 320 SDELPLPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
+DE LPPGW + GR YY +H T + W P
Sbjct: 2 ADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 36.2 bits (82), Expect = 0.043, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 356 EKEGLPTGWE-RIENPEYGVYFVNHITRQAQYEHP 389
++E LP GWE R+ VY+ NHIT +Q+E P
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
Score = 35.4 bits (80), Expect = 0.083, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 320 SDELPLPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
+DE LPPGW + GR YY +H T + W P
Sbjct: 2 ADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2LAY|A Chain A, Structure Of The First Ww Domain Of Human Yap In Complex
With A Phosphorylated Human Smad1 Derived Peptide
pdb|2LTW|A Chain A, Yap Ww1 In Complex With A Smad7 Derived Peptide
Length = 36
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 322 ELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
++PLP GW + T G++Y+++H +TT W P
Sbjct: 1 DVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDP 33
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE + YF+NHI + ++ P
Sbjct: 4 LPAGWEMAKTSSGQRYFLNHIDQTTTWQDP 33
>pdb|2L4J|A Chain A, Yap Ww2
Length = 46
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLP GW T G YYI+H KTT W P
Sbjct: 11 PLPEGWEQAITPEGEIYYINHKNKTTSWLDP 41
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE+ PE +Y++NH + + P
Sbjct: 12 LPEGWEQAITPEGEIYYINHKNKTTSWLDP 41
>pdb|1YFO|A Chain A, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
pdb|1YFO|B Chain B, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
Length = 302
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 102 IKVCE-KYKGPIAVHCKAGLGRTGCLI 127
+K C +Y G I VHC AG+GRTG +
Sbjct: 217 VKACNPQYAGAIVVHCSAGVGRTGTFV 243
>pdb|3RGQ|A Chain A, Crystal Structure Of Ptpmt1 In Complex With Pi(5)p
Length = 156
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 44 ENMSRKIHHLKCPNGVQLVVRLNQKNYDER-------KFTEAGLDHVDFYFPDGTAPPND 96
+NM+R+ L V+ V+ +N++ Y+ R ++ +AG++ + D T P
Sbjct: 18 KNMTRR---LVLDENVRGVITMNEE-YETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTL 73
Query: 97 I-LCEFIKVCEKYKGP---IAVHCKAGLGRTGCLIGAYMIKHYKMS---AMETIAWMR 147
L + ++ KY+ + VH KAG R+ ++ AY+I+ + S A+E IA +R
Sbjct: 74 ANLHKGVQFALKYQALGQCVYVHSKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIR 131
>pdb|2LTV|A Chain A, Yap Ww2 In Complex With A Smad7 Derived Peptide
Length = 36
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLP GW T G YYI+H KTT W P
Sbjct: 2 PLPDGWEQAMTQDGEIYYINHKNKTTSWLDP 32
>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta.
pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
Domain
Length = 291
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 87 FPD-GTAPPNDILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIG 128
+PD G L +F++ Y GP VHC AG+GRTG I
Sbjct: 189 WPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIA 237
>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With A Sulfamic Acid
(Soaking Experiment)
pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain Co-Crystallized With A Sulfamic Acid
Inhibitor
pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
Length = 313
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 87 FPD-GTAPPNDILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIG 128
+PD G L +F++ Y GP VHC AG+GRTG I
Sbjct: 208 WPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIA 256
>pdb|1YMZ|A Chain A, Cc45, An Artificial Ww Domain Designed Using Statistical
Coupling Analysis
Length = 43
Score = 35.4 bits (80), Expect = 0.076, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 323 LPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+PLPPGW + G+ YY + T TT W P
Sbjct: 7 MPLPPGWERRTDVEGKVYYFNVRTLTTTWERP 38
>pdb|2J16|B Chain B, Apo & Sulphate Bound Forms Of Sdp-1
Length = 182
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 98 LCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS 138
L I + I +HC+ GL R+ LI AY++K++ +S
Sbjct: 106 LTSIIHAATTKREKILIHCQCGLSRSATLIIAYIMKYHNLS 146
>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
Length = 295
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 87 FPD-GTAPPNDILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIG 128
+PD G L +F++ Y GP VHC AG+GRTG I
Sbjct: 192 WPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIA 240
>pdb|3QKP|A Chain A, Protein Tyrosine Phosphatase 1b - Apo W179f Mutant With
Open Wpd-Loop
pdb|3QKQ|A Chain A, Protein Tyrosine Phosphatase 1b - W179f Mutant Bound With
Vanadate
Length = 321
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
FPD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 179 FPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 233
>pdb|3L4H|A Chain A, Helical Box Domain And Second Ww Domain Of The Human E3
Ubiq Protein Ligase Hecw1
Length = 109
Score = 35.0 bits (79), Expect = 0.096, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
A L LP GW I +G+ +++DHN++ T + P
Sbjct: 67 ADTRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDP 102
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 356 EKEGLPTGWE-RIENPEYGVYFVNHITRQAQYEHP 389
++E LP GWE R+ VY+ NHIT +Q E P
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQAERP 37
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 320 SDELPLPPGWSIDFTL-RGRKYYIDHNTKTTHWSHP 354
+DE LPPGW + GR YY +H T + P
Sbjct: 2 ADEEKLPPGWEKRMSRSSGRVYYFNHITNASQAERP 37
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 360 LPTGWERIENPEYG-VYFVNHITRQAQYEHP 389
LP GWE+ + G VY+ NHIT +Q+E P
Sbjct: 2 LPPGWEKAMSRSSGRVYYFNHITNASQWERP 32
Score = 32.0 bits (71), Expect = 0.78, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 325 LPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
LPPGW + GR YY +H T + W P
Sbjct: 2 LPPGWEKAMSRSSGRVYYFNHITNASQWERP 32
>pdb|2CJZ|A Chain A, Crystal Structure Of The C472s Mutant Of Human Protein
Tyrosine Phosphatase Ptpn5 (Step, Striatum Enriched
Phosphatase) In Complex With Phosphotyrosine
Length = 305
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 17/90 (18%)
Query: 57 NGVQLVVR--LNQKNYDERKFT------EAGLDHVDFY-FPD----GTAPPNDILCEFIK 103
+GV++ V+ ++ ++Y R + E GL H F +PD APP L ++
Sbjct: 162 DGVEITVQKVIHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVE 221
Query: 104 VCEKYKGP----IAVHCKAGLGRTGCLIGA 129
+ +GP I VH AG+GRTGC I
Sbjct: 222 EAAQQEGPHCAPIIVHSSAGIGRTGCFIAT 251
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 111 PIAVHCKAGLGRTGCLI 127
PI VHC AG+GRTG LI
Sbjct: 254 PIVVHCSAGVGRTGVLI 270
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 87 FPDGTAP--PNDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMIKHY---- 135
+PD P P +L ++ ++ + GPI VH AG+GRTG +I M+
Sbjct: 417 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTK 476
Query: 136 ----KMSAMETIAWMRICRPGCV 154
+ +TI +R R G V
Sbjct: 477 GLDCDIDIQKTIQMVRAQRSGMV 499
>pdb|2BV5|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 At 1.8a Resolution
Length = 282
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 17/90 (18%)
Query: 57 NGVQLVVR--LNQKNYDERKFT------EAGLDHVDFY-FPD----GTAPPNDILCEFIK 103
+GV++ V+ ++ ++Y R + E GL H F +PD APP L ++
Sbjct: 141 DGVEITVQKVIHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVE 200
Query: 104 VCEKYKGP----IAVHCKAGLGRTGCLIGA 129
+ +GP I VH AG+GRTGC I
Sbjct: 201 EAAQQEGPHCAPIIVHXSAGIGRTGCFIAT 230
>pdb|1UIS|A Chain A, The 2.0 Crystal Structure Of Eqfp611, A Far-Red
Fluorescent Protein From The Sea Anemone Entacmaea
Quadricolor
pdb|1UIS|B Chain B, The 2.0 Crystal Structure Of Eqfp611, A Far-Red
Fluorescent Protein From The Sea Anemone Entacmaea
Quadricolor
Length = 231
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 17/186 (9%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKEGLPTG--WERIENPEYGVYFVNHIT 381
PLP + I T K +I H T K+ P G WER+ E G F +
Sbjct: 52 PLPFAFDILATSFXSKTFIKH----TKGIPDFFKQSFPEGFTWERVTRYEDGGVFT--VM 105
Query: 382 RQAQYEHPCAPHYIYQPEVRIALAXXXXXRHTQ-YQPHS-VIVPANPYLNQEIPMWLSV- 438
+ E C ++ V + T+ ++P++ ++ PA+ L M L+V
Sbjct: 106 QDTSLEDGCLVYHAKVTGVNFPSNGAVMQKKTKGWEPNTEMLYPADGGLRGYSQMALNVD 165
Query: 439 ---YSRASQDLDHKLR--WELFRLPELDCFNGMLTRLYKQELEDIVMRHEAYRSALLCEM 493
Y S + ++ + E F++P + L RL + + E V++HE + A C++
Sbjct: 166 GGGYLSCSFETTYRSKKTVENFKMPGFHFVDHRLERLEESDKEMFVVQHE-HAVAKFCDL 224
Query: 494 DRRLSQ 499
+L +
Sbjct: 225 PSKLGR 230
>pdb|4GRY|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GRZ|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Po4
Length = 288
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 87 FPDGTAP--PNDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMIKHY---- 135
+PD P P +L ++ ++ + GPI VH AG+GRTG +I M+
Sbjct: 177 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTK 236
Query: 136 ----KMSAMETIAWMRICRPGCV 154
+ +TI +R R G V
Sbjct: 237 GLDCDIDIQKTIQMVRAQRSGMV 259
>pdb|1FPR|A Chain A, Crystal Structure Of The Complex Formed Between The
Catalytic Domain Of Shp-1 And An In Vitro Peptide
Substrate Py469 Derived From Shps-1
Length = 284
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 87 FPDGTAP--PNDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMIKHY---- 135
+PD P P +L ++ ++ + GPI VH AG+GRTG +I M+
Sbjct: 175 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTK 234
Query: 136 ----KMSAMETIAWMRICRPGCV 154
+ +TI +R R G V
Sbjct: 235 GLDCDIDIQKTIQMVRAQRSGMV 257
>pdb|3QCL|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-(4-Hydroxybut-1-Yn-1-
Yl)benzoic Acid
pdb|3QCN|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Trigonal Crystal Form
Length = 310
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 110 GPIAVHCKAGLGRTGCLI 127
GP+ VHC AG+GRTG I
Sbjct: 236 GPVLVHCSAGVGRTGTYI 253
>pdb|2H4V|A Chain A, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
pdb|2H4V|B Chain B, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
Length = 320
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 110 GPIAVHCKAGLGRTGCLI 127
GP+ VHC AG+GRTG I
Sbjct: 247 GPVLVHCSAGVGRTGTYI 264
>pdb|2PBN|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma
Length = 313
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 110 GPIAVHCKAGLGRTGCLI 127
GP+ VHC AG+GRTG I
Sbjct: 237 GPVLVHCSAGVGRTGTYI 254
>pdb|2HY3|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
pdb|2HY3|B Chain B, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
Length = 313
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 110 GPIAVHCKAGLGRTGCLI 127
GP+ VHC AG+GRTG I
Sbjct: 237 GPVLVHCSAGVGRTGTYI 254
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of Human
Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 110 GPIAVHCKAGLGRTGCLI 127
GP+ VHC AG+GRTG I
Sbjct: 229 GPVLVHCSAGVGRTGTYI 246
>pdb|3S3E|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3E|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3F|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3F|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3H|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3H|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3K|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
pdb|3S3K|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
Length = 307
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 80 LDHVDFY-FPDGTAP-PNDILCEFIKVCEKYKG----PIAVHCKAGLGRTGCLI 127
L H F +PD P P L F++ G PI VHC AG+GR+G I
Sbjct: 200 LRHFHFTTWPDFGVPNPPQTLVRFVRAFRDRIGAEQRPIVVHCSAGVGRSGTFI 253
>pdb|3QCB|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCB|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCC|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCC|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCD|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Trigonal Crystal Form
pdb|3QCE|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCE|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCF|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCF|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCG|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3-Bromo-4-Chlorobenzyl)sulfanyl]thiophene-2-
Carboxylic Acid
pdb|3QCH|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]-N-(Methylsulfonyl)
Thiophene-2-Carboxamide
pdb|3QCI|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
N-[(3-Aminophenyl)sulfonyl]-3-[(3,4-Dichlorobenzyl)
Sulfanyl]thiophene-2-Carboxamide
pdb|3QCJ|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
5-[({3-[(3,4-Dichlorobenzyl)sulfanyl]thiophen-2-
Yl}carbonyl)sulfamoyl]-2-Methoxybenzoic Acid
pdb|3QCK|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]benzoic Acid
Length = 310
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 110 GPIAVHCKAGLGRTGCLI 127
GP+ VHC AG+GRTG I
Sbjct: 236 GPVLVHCSAGVGRTGTYI 253
>pdb|3B7O|A Chain A, Crystal Structure Of The Human Tyrosine Phosphatase Shp2
(Ptpn11) With An Accessible Active Site
Length = 316
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 110 GPIAVHCKAGLGRTGCL 126
GP+ VHC AG+GRTG
Sbjct: 240 GPVVVHCSAGIGRTGTF 256
>pdb|3QCM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
pdb|3QCM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
Length = 310
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 110 GPIAVHCKAGLGRTGCLI 127
GP+ VHC AG+GRTG I
Sbjct: 236 GPVLVHCSAGVGRTGTYI 253
>pdb|3O5X|A Chain A, Crystal Structure Of The Oncogenic Tyrosine Phosphatase
Shp2 Complexed With A Salicylic Acid-Based Small
Molecule Inhibitor
pdb|3MOW|A Chain A, Crystal Structure Of Shp2 In Complex With A Tautomycetin
Analog Ttn D- 1
Length = 276
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 110 GPIAVHCKAGLGRTGCL 126
GP+ VHC AG+GRTG
Sbjct: 193 GPVVVHCSAGIGRTGTF 209
>pdb|1P15|A Chain A, Crystal Structure Of The D2 Domain Of Rptpa
pdb|1P15|B Chain B, Crystal Structure Of The D2 Domain Of Rptpa
Length = 253
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 111 PIAVHCKAGLGRTGCLIG-AYMIKHYK----MSAMETIAWMRICRPGCVIGVQQ 159
PI VHC AG GRTG + +++ K + +T+ +R+ RP V ++Q
Sbjct: 178 PITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQ 231
>pdb|1I6C|A Chain A, Solution Structure Of Pin1 Ww Domain
pdb|1I8G|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With Cdc25
Phosphothreonine Peptide
pdb|1I8H|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With Human
Tau Phosphothreonine Peptide
Length = 39
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 360 LPTGWE-RIENPEYGVYFVNHITRQAQYEHPCA 391
LP GWE R+ VY+ NHIT +Q+E P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERPSG 34
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 325 LPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
LPPGW + GR YY +H T + W P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 110 GPIAVHCKAGLGRTGCL 126
GP+ VHC AG+GRTG
Sbjct: 453 GPVVVHCSAGIGRTGTF 469
>pdb|2NZ6|A Chain A, Crystal Structure Of The Ptprj Inactivating Mutant C1239s
Length = 316
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 85 FYF---PD-GTAPPNDILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIG----AY 130
F+F PD G D+L F + Y + PI VH AG+GRTG I Y
Sbjct: 203 FHFTSWPDHGVPDTTDLLINFRYLVRDYMKQSPPESPILVHSSAGVGRTGTFIAIDRLIY 262
Query: 131 MIKHYKMSAMETIAW-MRICRPGCV 154
I++ + I + +R+ RP V
Sbjct: 263 QIENENTVDVYGIVYDLRMHRPLMV 287
>pdb|2KCF|A Chain A, The Nmr Solution Structure Of The Isolated Apo Pin1 Ww
Domain
Length = 36
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 360 LPTGWE-RIENPEYGVYFVNHITRQAQYEHPCA 391
LP GWE R+ VY+ NHIT +Q+E P
Sbjct: 4 LPPGWEKRMSRSSGRVYYFNHITNASQWERPSG 36
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 325 LPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
LPPGW + GR YY +H T + W P
Sbjct: 4 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 34
>pdb|2LB3|A Chain A, Structure Of The Ww Domain Of Pin1 In Complex With A Human
Phosphorylated Smad3 Derived Peptide
Length = 36
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 360 LPTGWE-RIENPEYGVYFVNHITRQAQYEHPCA 391
LP GWE R+ VY+ NHIT +Q+E P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERPSG 34
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 325 LPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354
LPPGW + GR YY +H T + W P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
>pdb|3E5W|A Chain A, Crystal Structure Analysis Of Fp611
pdb|3E5W|B Chain B, Crystal Structure Analysis Of Fp611
pdb|3E5W|C Chain C, Crystal Structure Analysis Of Fp611
pdb|3E5W|D Chain D, Crystal Structure Analysis Of Fp611
Length = 242
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 17/186 (9%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKEGLPTG--WERIENPEYGVYFVNHIT 381
PLP + I T K +I H T K+ P G WER+ E G F +
Sbjct: 63 PLPFAFDILATSFXSKTFIKH----TKGIPDFFKQSFPEGFTWERVTRYEDGGVFT--VM 116
Query: 382 RQAQYEHPCAPHYIYQPEVRIALAXXXXXRHTQ-YQPHS-VIVPANPYLNQEIPMWLSV- 438
+ E C ++ V + T+ ++P + ++ PA+ L M L+V
Sbjct: 117 QDTSLEDGCLVYHAKVTGVNFPSNGAVMQKKTKGWEPSTEMLYPADGGLRGYCQMALNVD 176
Query: 439 ---YSRASQDLDHKLRW--ELFRLPELDCFNGMLTRLYKQELEDIVMRHEAYRSALLCEM 493
Y S + ++ + E F++P + L RL + + E V++HE + A C++
Sbjct: 177 GGGYLFCSFETTYRSKKTDENFKMPGFHFVDHRLERLEESDKEMFVVQHE-HAVAKFCDL 235
Query: 494 DRRLSQ 499
+L +
Sbjct: 236 PSKLGR 241
>pdb|3A5K|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 304
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTGCLIGA 129
+PD P P L KV E GP+ VHC AG+GR+G A
Sbjct: 185 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLA 234
>pdb|1NWL|A Chain A, Crystal Structure Of The Ptp1b Complexed With
Sp7343-Sp7964, A Ptyr Mimetic
pdb|1NWE|A Chain A, Ptp1b R47c Modified At C47 With N-[4-(2-{2-[3-(2-Bromo-
Acetylamino)-Propionylamino]-3-Hydroxy-Propionylamino}-
Ethyl)-Phenyl]-Oxalamic Acid
Length = 298
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTGCLIGA 129
+PD P P L KV E GP+ VHC AG+GR+G A
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLA 228
>pdb|3E5V|A Chain A, Crystal Structure Analysis Of Eqfp611 Double Mutant T122r,
N143s
Length = 242
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 23/189 (12%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKEGLPTG--WERIENPEYGVYFVNHIT 381
PLP + I T K +I H T K+ P G WER+ E G F +
Sbjct: 63 PLPFAFDILATSFXSKTFIKH----TKGIPDFFKQSFPEGFTWERVTRYEDGGVFT--VM 116
Query: 382 RQAQYEHPCAPHYIYQPEVRI----ALAXXXXXRHTQYQPHS-VIVPANPYLNQEIPMWL 436
+ E C +Y +VR + + ++P + ++ PA+ L M L
Sbjct: 117 QDTSLEDGC---LVYHAKVRGVNFPSNGAVMQKKTKGWEPSTEMLYPADGGLRGYSQMAL 173
Query: 437 SV----YSRASQDLDHKLR--WELFRLPELDCFNGMLTRLYKQELEDIVMRHEAYRSALL 490
+V Y S + ++ + E F++P + L RL + + E V++HE + A
Sbjct: 174 NVDGGGYLSCSFETTYRSKKTVENFKMPGFHFVDHRLERLEESDKEMFVVQHE-HAVAKF 232
Query: 491 CEMDRRLSQ 499
C++ +L +
Sbjct: 233 CDLPSKLGR 241
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 233
>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 327
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 185 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 239
>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 12 Using A Linked-Fragment Strategy
pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 23 Using A Linked-fragment Strategy
pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 5 Using A Linked-fragment Strategy
pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine
Phosphatase 1b Using A Second Phosphotyrosine Binding
Site, Complexed With Compound 19.
pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 17
pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 8b
pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
Sulfenyl-Amide Bond
pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
Potent And Selective Bidentate Inhibitor Compound 2
pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b
Targeting The Second Phosphotyrosine Site
pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase
1b Inhibitor Using A Linked Fragment Strategy And A
Malonate Head On The First Site
pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
Ptp1b Inhibitors
pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
Protein Tyrosine Phosphatase 1b
pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Compound Lzp-6
pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Inhibitor Lzp-25
pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo First Catalytic Step
pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo Second Catalytic Step
Length = 321
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 233
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 87 FPDGTAPPN--DILCEFIKVCEKYK---GPIAVHCKAGLGRTGCLI 127
+PD P + D L EF+ + P+ VHC AG+GRTG L+
Sbjct: 183 WPDHGVPDDSSDFL-EFVNYVRSLRVDSEPVLVHCSAGIGRTGVLV 227
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-dioxo-1h-
Benzo[d]isothiazol-3-yloxymethyl)-2-(oxalyl-amino)-4,7-
Dihydro-5h-thieno[2,3-c]pyran-3-carboxylic Acid
Length = 321
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 233
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 233
>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
Length = 298
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 233
>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
Length = 304
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 185 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 239
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 178 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 232
>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene
Inhibitor
pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
Inhibitor.
pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
Inhibitor
pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
Length = 299
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 233
>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
Length = 299
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 233
>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
Length = 298
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 233
>pdb|2FJM|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJM|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 191 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 245
>pdb|1Q6J|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|1Q6M|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 3
pdb|1Q6N|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6N|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6P|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6P|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6S|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6S|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6T|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|1Q6T|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|2FJN|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJN|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 191 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 245
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
(R47v, D48n) Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 233
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 110 GPIAVHCKAGLGRTG--CLIGAYMI 132
GP+ VHC AG+GR+G CL ++
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCLL 233
>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Inhibitor
[(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
Length = 354
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 84 DFYFPDGTAPPNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CL 126
DF P+ P L KV E GP+ VHC AG+GR+G CL
Sbjct: 215 DFGVPES---PASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCL 261
>pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Acid
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-
Thieno[2,3-C]pyridine-3-Carboxylic Acid
Length = 298
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 233
>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
Length = 300
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 181 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 235
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 87 FPDGTAPPN-DILCEFIKVCEKYKG----PIAVHCKAGLGRTGCLIGAYMIKHYKMSAM- 140
+PD P + D + ++ + +G P+ VHC AG GRTG L ++ ++ M
Sbjct: 199 WPDRGVPSSPDHMLAMVEEARRLQGSGPEPLCVHCSAGCGRTGVLCTVDYVRQLLLTQMI 258
Query: 141 -------ETIAWMRICRPGCV 154
+ + MR RP V
Sbjct: 259 PPDFSLFDVVLKMRKQRPAAV 279
>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
Length = 302
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
+PD P P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 183 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 237
>pdb|3E5T|A Chain A, Crystal Structure Analysis Of Fp611
Length = 242
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 17/186 (9%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKEGLPTG--WERIENPEYGVYFVNHIT 381
PLP + I T K +I H T K+ P G WER+ E G F +
Sbjct: 63 PLPFAFDILATSFXSKTFIKH----TKGIPDFFKQSFPEGFTWERVTRYEDGGVFT--VM 116
Query: 382 RQAQYEHPCAPHYIYQPEVRIALAXXXXXRHTQ-YQPHS-VIVPANPYLNQEIPMWLSV- 438
+ E C ++ + T+ ++P++ ++ PA+ L M L+V
Sbjct: 117 QDTSLEDGCLVYHAKVTGTNFPSNGAVMQKKTKGWEPNTEMLYPADGGLRGYSQMALNVD 176
Query: 439 ---YSRASQDLDHKLR--WELFRLPELDCFNGMLTRLYKQELEDIVMRHEAYRSALLCEM 493
Y S + ++ + E F++P + L RL + + E V++HE + A C++
Sbjct: 177 GGGYLSCSFETTYRSKKTVENFKMPGFHFVDHRLERLEESDKEMFVVQHE-HAVAKFCDL 235
Query: 494 DRRLSQ 499
+L +
Sbjct: 236 PSKLGR 241
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 110 GPIAVHCKAGLGRTG--CLIGAYMI 132
GP+ VHC AG+GR+G CL ++
Sbjct: 221 GPVVVHCSAGIGRSGTFCLADTCLL 245
>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
Length = 290
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 84 DFYFPDGTAPPNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG--CLIGAYMI 132
DF P+ P L KV E GP+ VHC AG+GR+G CL ++
Sbjct: 188 DFGVPES---PASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 240
>pdb|2PA5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|2PA5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|4GE2|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE2|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE6|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
pdb|4GE6|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
Length = 314
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 111 PIAVHCKAGLGRTGCLIG-----AYMIKHYKMSAMETIAWMRICR 150
PI VHC AG+GRTG A + + ++ +T++ MR R
Sbjct: 235 PIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQR 279
>pdb|1XRI|A Chain A, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|1XRI|B Chain B, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|2Q47|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
pdb|2Q47|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
Length = 151
Score = 32.3 bits (72), Expect = 0.70, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 111 PIAVHCKAGLGRTGCLIG 128
P+ +HCK G RTGCL+G
Sbjct: 94 PVLIHCKRGKHRTGCLVG 111
>pdb|2Y96|A Chain A, Structure Of Human Dual-Specificity Phosphatase 27
pdb|2Y96|B Chain B, Structure Of Human Dual-Specificity Phosphatase 27
Length = 219
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 112 IAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVI 155
I VHC G R+ L+ AY++ H M+ ++ I ++ + CV+
Sbjct: 142 ILVHCVMGRSRSATLVLAYLMIHKDMTLVDAI--QQVAKNRCVL 183
>pdb|2I1Y|A Chain A, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
pdb|2I1Y|B Chain B, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
Length = 301
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 89 DGTAPPNDILCEFI-KVCEKYKG---PIAVHCKAGLGRTGCLIGAYMIKHYKMSAME--- 141
+GT L +F KV + Y+G PI VHC G GRTG I M+ + ++
Sbjct: 200 EGTPASTRPLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGVKEID 259
Query: 142 ---TIAWMRICRPGCV 154
T+ +R RPG V
Sbjct: 260 IAATLEHVRDQRPGLV 275
>pdb|2E0T|A Chain A, Crystal Structure Of Catalytic Domain Of Dual Specificity
Phosphatase 26, Ms0830 From Homo Sapiens
Length = 151
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 110 GPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETI 143
G I VHC G+ R+ L+ AY++ ++ ++ +E I
Sbjct: 86 GKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAI 119
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 87 FPDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTG-------CLIGAYMI 132
+PD P P L KV E GP +HC AG+GR+G CL+ M
Sbjct: 180 WPDFGVPESPASFLNFLFKVRESGSLNPDHGPAVIHCSAGIGRSGTFSLVDTCLV--LME 237
Query: 133 KHYKMSAMETIAWMRICRPGCV 154
K ++ + + MR R G +
Sbjct: 238 KGDDINIKQVLLNMRKYRMGLI 259
>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q
Length = 415
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 322 ELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKEGLPTGWERIEN-PEYGVYFVNHI 380
E+ LP +DF + + D NTKT +KEG+P GW+ ++N PE F +
Sbjct: 276 EVVLP----VDFII-ADAFSADANTKTVT-----DKEGIPAGWQGLDNGPESRKLFAATV 325
Query: 381 TR 382
+
Sbjct: 326 AK 327
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 322 ELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKEGLPTGWERIEN-PEYGVYFVNHI 380
E+ LP +DF + + D NTKT +KEG+P GW+ ++N PE F +
Sbjct: 206 EVVLP----VDFII-ADAFSADANTKTVT-----DKEGIPAGWQGLDNGPESRKLFAATV 255
Query: 381 TR 382
+
Sbjct: 256 AK 257
>pdb|2KBU|A Chain A, Nmr Solution Structure Of Pin1 Ww Domain Mutant With Beta
Turn Mimic At Position 12
Length = 31
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHPCA 391
LP GWE+ + VY+ NHIT +Q+E P
Sbjct: 2 LPPGWEKRMSXR--VYYFNHITNASQFERPSG 31
>pdb|2QEP|A Chain A, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
pdb|2QEP|B Chain B, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
Length = 304
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 82 HVDFYFPDGTAPPNDILCEFI-KVCEKYKG---PIAVHCKAGLGRTG--CLIGAYMIKHY 135
H ++ G + L +F KV + Y+G PI VHC G GR+G LI + K
Sbjct: 194 HFLSWYDRGVPSSSRSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRSGTYVLIDMVLNKMA 253
Query: 136 K----MSAMETIAWMRICRPGCVIGVQQ 159
K + T+ +R RPG V +Q
Sbjct: 254 KGAKEIDIAATLEHLRDQRPGMVQTKEQ 281
>pdb|3F81|A Chain A, Interaction Of Vhr With Sa3
pdb|3F81|B Chain B, Interaction Of Vhr With Sa3
Length = 183
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 110 GPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMR 147
G + VHC+ G R+ L+ AY++ KM ++ +R
Sbjct: 116 GRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVR 153
>pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase
pdb|1VHR|B Chain B, Human Vh1-Related Dual-Specificity Phosphatase
Length = 184
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 100 EFI-KVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMR 147
+FI + + G + VHC+ G R+ L+ AY++ KM ++ +R
Sbjct: 106 DFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVR 154
>pdb|1G4U|S Chain S, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
pdb|1G4W|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp
Length = 383
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 114 VHCKAGLGRTGCLIGAYMIKHYKMSAMETI 143
+HC G+GRTG + A ++K S +E +
Sbjct: 319 IHCLGGVGRTGTMAAALVLKDNPHSNLEQV 348
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The
Yeast Splicing Factor Prp40
Length = 75
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 337 GRKYYIDHNTKTTHWSHPLE---KEGL---PTGWERIENPEYGVYFVNHITRQAQYEHP 389
GR YY + TK + W P E +E L GW+ + + VY+ N TR+ + P
Sbjct: 12 GRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIP 70
>pdb|3H2X|A Chain A, Crystal Structure Of The Human Lymphoid Tyrosine
Phosphatase Catalytic Domain
Length = 302
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 111 PIAVHCKAGLGRTGCL 126
PI +HC AG GRTG +
Sbjct: 222 PICIHCSAGCGRTGVI 237
>pdb|2P6X|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
pdb|2P6X|B Chain B, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
Length = 309
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 111 PIAVHCKAGLGRTGCL 126
PI +HC AG GRTG +
Sbjct: 222 PICIHCSAGCGRTGVI 237
>pdb|2QCJ|A Chain A, Native Structure Of Lyp
pdb|2QCJ|B Chain B, Native Structure Of Lyp
pdb|2QCT|A Chain A, Structure Of Lyp With Inhibitor I-C11
pdb|2QCT|B Chain B, Structure Of Lyp With Inhibitor I-C11
Length = 313
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 111 PIAVHCKAGLGRTGCL 126
PI +HC AG GRTG +
Sbjct: 241 PICIHCSAGCGRTGVI 256
>pdb|2R0B|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase-like
Serine/threonine/tyrosine-interacting Protein
Length = 154
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 100 EFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMR 147
EFI + G + VH AG+ R+ + AY+++ + M + A+++
Sbjct: 81 EFIDGSLQMGGKVLVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYVQ 128
>pdb|1WMV|A Chain A, Solution Structure Of The Second Ww Domain Of Wwox
Length = 54
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE+ + V+FV+HI ++ Y P
Sbjct: 12 LPYGWEQETDENGQVFFVDHINKRTTYLDP 41
>pdb|3F41|A Chain A, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
pdb|3F41|B Chain B, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
Length = 629
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 84 DFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETI 143
D + PD P D EF K K + HC AG+GRT +M+ H + + +
Sbjct: 210 DHFRPDD--PDVDKFLEFYKSLPK-DAWLHYHCYAGMGRTTI----FMVMHDILKNAKDV 262
Query: 144 AWMRICRPGCVIGVQQDWLKDVQHVLQNVG-----DKYRSIRQRTTNIQ-----RHPYGI 193
++ I + +IG+ L ++ +N G ++Y+ ++ ++ + PY +
Sbjct: 263 SFDDIIQRQKLIGIVD--LSEIPDKKKNYGRKAYIERYQFVQHFYDYVKENPDLKTPYSV 320
Query: 194 YSKKWKA 200
++KK K
Sbjct: 321 WAKKNKV 327
>pdb|3S4E|A Chain A, Crystal Structrue Of A Novel Mitogen-Activated Protein
Kinase Phosphatase, Skrp1
Length = 144
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 86 YFPDGTAPPNDILC-EFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIA 144
YFP+ C EFI+ ++ G + VH AG+ R ++ +++ + S +
Sbjct: 66 YFPE---------CFEFIEEAKRKDGVVLVHSNAGVSRAAAIVIGFLMNSEQTSFTSAFS 116
Query: 145 WMRICRP 151
++ RP
Sbjct: 117 LVKNARP 123
>pdb|3S8J|A Chain A, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 2.6a Resolution
pdb|3S8J|B Chain B, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 2.6a Resolution
pdb|3S8K|A Chain A, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 1.7a Resolution
pdb|3S8K|B Chain B, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 1.7a Resolution
Length = 184
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 307 SISCHPSQQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKEGLPTGWER 366
+I+C+ + D P GW++ TL G K Y H ++TH ++K GLP ++
Sbjct: 86 TINCNETTAWK--VDRFPGVIGWTV--TLGGEKGY--HGFESTHSMFKIKKAGLPFSYKF 139
Query: 367 IENPEY 372
P Y
Sbjct: 140 HFCPSY 145
>pdb|1EG3|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
With A Beta-Dystroglycan Peptide
pdb|1EG4|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
With A Beta-Dystroglycan Peptide
Length = 261
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 340 YYIDHNTKTTHWSHPLEKEGLPTGWERIENPEYGVYFVNHITRQAQ 385
YYI+H T+TT W HP E L + N + Y R+ Q
Sbjct: 27 YYINHETQTTCWDHPKMTE-LYQSLADLNNVRFSAYRTAMKLRRLQ 71
>pdb|2BBU|A Chain A, Solution Structure Of Mouse Socs3 In Complex With A
Phosphopeptide From The Gp130 Receptor
Length = 164
Score = 28.5 bits (62), Expect = 8.3, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 253 TLCRRKPNNVMNARAETQADNLLLMS-ALSPSYISLHDIPDNMPYHFTPYPPQIPSISCH 311
TL + + N R + + + L S S + D + +H+ P PP PS S
Sbjct: 60 TLSVKTQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYMP-PPGTPSFSLP 118
Query: 312 PSQQLHEASDELP-LPPGWSIDFTLRGRKYYI 342
P+ E S E+P PP ++ + R YYI
Sbjct: 119 PT----EPSSEVPEQPPAQALPGSTPKRAYYI 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,047,807
Number of Sequences: 62578
Number of extensions: 735261
Number of successful extensions: 1614
Number of sequences better than 100.0: 223
Number of HSP's better than 100.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1337
Number of HSP's gapped (non-prelim): 293
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)