Query psy3114
Match_columns 515
No_of_seqs 527 out of 2452
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 16:47:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1891|consensus 100.0 1.4E-55 3E-60 406.3 10.5 230 256-505 37-271 (271)
2 KOG1720|consensus 100.0 4.2E-31 9.1E-36 244.8 14.9 162 1-167 42-206 (225)
3 PTZ00393 protein tyrosine phos 99.9 6.3E-24 1.4E-28 204.1 16.6 145 1-168 81-228 (241)
4 PTZ00242 protein tyrosine phos 99.9 2.6E-23 5.6E-28 193.2 16.7 143 11-171 10-160 (166)
5 PHA02740 protein tyrosine phos 99.9 2.5E-23 5.4E-28 210.6 13.0 155 12-170 81-289 (298)
6 PHA02742 protein tyrosine phos 99.9 1.2E-22 2.6E-27 206.7 12.0 151 12-166 83-292 (303)
7 PHA02746 protein tyrosine phos 99.9 1.6E-22 3.4E-27 207.3 11.8 151 12-166 103-310 (323)
8 PHA02747 protein tyrosine phos 99.9 6.1E-22 1.3E-26 202.2 12.2 154 12-169 83-298 (312)
9 KOG0790|consensus 99.9 1.2E-22 2.5E-27 205.3 5.8 164 2-172 311-524 (600)
10 PHA02738 hypothetical protein; 99.9 8.3E-22 1.8E-26 201.8 11.0 151 12-166 80-290 (320)
11 KOG0792|consensus 99.9 1.2E-21 2.5E-26 215.7 10.5 150 18-171 938-1132(1144)
12 KOG4228|consensus 99.9 8.6E-22 1.9E-26 219.0 8.7 218 12-270 598-862 (1087)
13 smart00194 PTPc Protein tyrosi 99.8 8.7E-21 1.9E-25 188.9 11.4 152 11-166 58-256 (258)
14 cd00047 PTPc Protein tyrosine 99.8 2.9E-20 6.3E-25 182.0 11.8 152 11-166 30-229 (231)
15 PRK15375 pathogenicity island 99.8 2.2E-20 4.8E-25 194.9 8.9 153 13-167 329-527 (535)
16 COG5599 PTP2 Protein tyrosine 99.8 2.3E-19 4.9E-24 172.0 8.7 157 11-170 83-294 (302)
17 smart00195 DSPc Dual specifici 99.8 3E-18 6.6E-23 154.3 14.9 114 50-169 19-136 (138)
18 cd00127 DSPc Dual specificity 99.8 5.4E-18 1.2E-22 152.3 14.2 133 12-168 2-138 (139)
19 PF00782 DSPc: Dual specificit 99.7 3.3E-17 7.2E-22 146.4 13.6 116 51-169 12-131 (133)
20 KOG0791|consensus 99.7 7.4E-18 1.6E-22 168.8 9.6 147 17-166 164-350 (374)
21 KOG2836|consensus 99.7 6E-17 1.3E-21 140.1 13.7 131 18-165 17-152 (173)
22 KOG1718|consensus 99.7 2.9E-17 6.4E-22 147.5 12.0 135 9-171 14-154 (198)
23 KOG0793|consensus 99.7 4E-18 8.6E-23 180.1 6.9 139 11-165 791-990 (1004)
24 PF00102 Y_phosphatase: Protei 99.7 7.1E-18 1.5E-22 164.4 7.7 140 11-166 31-233 (235)
25 KOG1719|consensus 99.6 5.9E-15 1.3E-19 130.9 10.7 115 51-166 45-167 (183)
26 KOG1716|consensus 99.6 1.9E-14 4.2E-19 145.4 14.3 140 10-172 73-216 (285)
27 KOG1717|consensus 99.6 1.1E-14 2.4E-19 139.6 11.1 120 50-174 190-314 (343)
28 PRK12361 hypothetical protein; 99.6 3.3E-14 7.2E-19 156.3 15.7 137 11-170 94-235 (547)
29 KOG0789|consensus 99.6 1E-14 2.2E-19 154.8 10.9 90 79-168 263-365 (415)
30 smart00404 PTPc_motif Protein 99.6 2.9E-14 6.4E-19 121.0 10.8 86 80-165 2-102 (105)
31 smart00012 PTPc_DSPc Protein t 99.6 2.9E-14 6.4E-19 121.0 10.8 86 80-165 2-102 (105)
32 COG2453 CDC14 Predicted protei 99.5 5.8E-14 1.3E-18 132.5 13.4 97 70-166 63-164 (180)
33 PF05706 CDKN3: Cyclin-depende 99.5 5.4E-14 1.2E-18 128.3 11.1 123 11-143 28-168 (168)
34 KOG2283|consensus 99.5 1.9E-13 4E-18 143.8 11.5 149 10-170 13-175 (434)
35 KOG4228|consensus 99.5 8.9E-14 1.9E-18 155.7 8.5 147 16-166 893-1081(1087)
36 KOG3209|consensus 99.4 1E-12 2.3E-17 139.8 8.3 123 320-444 218-381 (984)
37 PF03162 Y_phosphatase2: Tyros 99.3 2.2E-11 4.7E-16 113.0 10.6 115 50-166 25-147 (164)
38 TIGR01244 conserved hypothetic 99.0 3.1E-09 6.7E-14 95.6 11.8 100 49-152 19-127 (135)
39 PF00397 WW: WW domain; Inter 98.9 1.7E-09 3.6E-14 71.8 3.3 30 360-389 1-31 (31)
40 KOG2386|consensus 98.8 1.7E-08 3.6E-13 104.2 9.4 146 17-166 23-179 (393)
41 PF04273 DUF442: Putative phos 98.8 7E-08 1.5E-12 83.5 10.6 80 48-130 18-106 (110)
42 PLN02727 NAD kinase 98.8 3.5E-08 7.5E-13 110.5 10.7 89 48-137 272-369 (986)
43 smart00456 WW Domain with 2 co 98.7 1.6E-08 3.5E-13 67.5 3.8 31 360-390 1-31 (32)
44 KOG3209|consensus 98.6 2.2E-08 4.8E-13 107.4 5.0 145 288-461 131-301 (984)
45 cd00201 WW Two conserved trypt 98.5 8.3E-08 1.8E-12 63.5 3.7 30 361-390 1-30 (31)
46 PF13350 Y_phosphatase3: Tyros 98.5 3E-07 6.6E-12 85.3 8.1 97 48-146 33-160 (164)
47 PF00397 WW: WW domain; Inter 98.5 1.4E-07 3E-12 62.6 3.9 30 325-354 1-31 (31)
48 KOG1572|consensus 98.4 3E-06 6.4E-11 81.3 11.5 112 52-165 80-203 (249)
49 PF14566 PTPlike_phytase: Inos 98.3 5.4E-07 1.2E-11 82.4 5.0 62 72-133 85-148 (149)
50 COG5104 PRP40 Splicing factor 98.3 1.1E-07 2.4E-12 97.2 0.4 69 325-393 13-87 (590)
51 smart00456 WW Domain with 2 co 98.3 1.1E-06 2.3E-11 58.7 4.2 31 325-355 1-31 (32)
52 cd00201 WW Two conserved trypt 98.1 5.3E-06 1.1E-10 54.7 4.1 30 326-355 1-30 (31)
53 COG3453 Uncharacterized protei 98.0 5.6E-05 1.2E-09 65.1 9.9 95 49-147 20-123 (130)
54 COG5350 Predicted protein tyro 98.0 0.0001 2.3E-09 66.1 12.0 129 50-180 24-163 (172)
55 KOG1891|consensus 97.8 1.3E-05 2.9E-10 75.6 3.1 71 285-355 89-159 (271)
56 KOG3259|consensus 97.7 1.4E-05 2.9E-10 70.8 1.9 36 358-393 5-41 (163)
57 COG2365 Protein tyrosine/serin 97.6 0.00014 3E-09 72.3 7.7 60 95-154 121-181 (249)
58 KOG0940|consensus 97.4 0.00019 4.1E-09 74.5 5.3 73 319-392 55-146 (358)
59 KOG3259|consensus 97.1 0.00027 5.9E-09 62.7 2.2 36 322-357 4-40 (163)
60 KOG0155|consensus 97.0 0.001 2.2E-08 70.2 5.5 29 363-391 115-143 (617)
61 KOG3552|consensus 92.0 0.043 9.4E-07 61.9 -0.2 44 347-390 3-50 (1298)
62 KOG4471|consensus 91.9 0.24 5.1E-06 53.8 5.2 31 100-130 365-395 (717)
63 COG5104 PRP40 Splicing factor 91.7 0.065 1.4E-06 55.8 0.8 27 363-389 16-42 (590)
64 PF14671 DSPn: Dual specificit 91.1 0.51 1.1E-05 42.7 5.8 64 87-150 38-111 (141)
65 PF00473 CRF: Corticotropin-re 89.4 0.98 2.1E-05 31.4 4.7 35 477-511 5-39 (39)
66 KOG0940|consensus 89.4 0.69 1.5E-05 48.3 5.9 82 358-461 59-146 (358)
67 KOG4286|consensus 89.4 0.12 2.6E-06 57.3 0.3 28 364-391 354-381 (966)
68 KOG4239|consensus 88.8 0.55 1.2E-05 47.2 4.4 43 452-494 297-339 (348)
69 COG5021 HUL4 Ubiquitin-protein 87.3 0.1 2.2E-06 60.2 -1.9 71 323-393 386-480 (872)
70 PF04179 Init_tRNA_PT: Initiat 86.4 2.9 6.3E-05 45.1 8.5 57 78-134 337-401 (451)
71 KOG0155|consensus 83.7 3.3 7.3E-05 44.5 7.3 28 329-356 116-143 (617)
72 COG5021 HUL4 Ubiquitin-protein 83.4 0.22 4.8E-06 57.5 -1.6 137 319-467 293-485 (872)
73 PF06602 Myotub-related: Myotu 81.4 2.2 4.7E-05 44.7 5.0 24 107-130 229-252 (353)
74 KOG4334|consensus 77.2 1.8 3.8E-05 46.2 2.7 35 358-392 153-187 (650)
75 KOG1089|consensus 74.2 6.1 0.00013 43.5 5.9 35 240-274 437-471 (573)
76 smart00039 CRF corticotropin-r 70.3 6.9 0.00015 27.4 3.4 35 477-511 6-40 (40)
77 KOG4334|consensus 65.9 6.3 0.00014 42.2 3.6 35 320-354 150-184 (650)
78 PF11629 Mst1_SARAH: C termina 60.2 13 0.00029 27.1 3.4 39 456-494 9-47 (49)
79 KOG4286|consensus 55.6 3.6 7.9E-05 46.1 -0.2 27 329-355 354-380 (966)
80 cd01448 TST_Repeat_1 Thiosulfa 54.2 30 0.00065 29.6 5.5 44 93-138 62-106 (122)
81 cd01518 RHOD_YceA Member of th 51.2 17 0.00036 30.2 3.2 29 107-138 59-87 (101)
82 cd01533 4RHOD_Repeat_2 Member 50.0 27 0.00058 29.4 4.4 37 98-137 54-91 (109)
83 COG0607 PspE Rhodanese-related 48.6 16 0.00036 30.3 2.8 26 106-133 58-83 (110)
84 KOG3552|consensus 46.6 5.4 0.00012 45.9 -0.6 34 322-355 17-50 (1298)
85 TIGR03865 PQQ_CXXCW PQQ-depend 45.8 50 0.0011 30.4 5.8 19 107-125 114-132 (162)
86 cd01523 RHOD_Lact_B Member of 43.6 22 0.00049 29.3 2.8 28 108-138 60-87 (100)
87 smart00391 MBD Methyl-CpG bind 41.0 38 0.00083 27.3 3.6 10 324-333 7-16 (77)
88 PLN02160 thiosulfate sulfurtra 40.6 32 0.0007 30.6 3.5 29 107-138 79-107 (136)
89 smart00391 MBD Methyl-CpG bind 40.2 29 0.00062 28.0 2.8 21 359-379 7-35 (77)
90 cd01396 MeCP2_MBD MeCP2, MBD1, 36.1 51 0.0011 26.5 3.7 9 325-333 7-15 (77)
91 cd00122 MBD MeCP2, MBD1, MBD2, 35.2 51 0.0011 25.1 3.4 11 323-333 4-14 (62)
92 PF09403 FadA: Adhesion protei 33.7 56 0.0012 29.0 3.8 29 470-498 86-114 (126)
93 cd01532 4RHOD_Repeat_1 Member 31.4 65 0.0014 26.1 3.7 25 108-132 49-73 (92)
94 smart00400 ZnF_CHCC zinc finge 30.9 65 0.0014 23.8 3.3 32 113-146 23-54 (55)
95 PF13815 Dzip-like_N: Iguana/D 30.7 77 0.0017 27.5 4.2 58 445-507 52-110 (118)
96 cd01522 RHOD_1 Member of the R 29.0 1E+02 0.0022 26.3 4.7 19 107-126 62-80 (117)
97 PF08776 VASP_tetra: VASP tetr 29.0 1.1E+02 0.0024 21.5 3.7 28 481-511 4-31 (40)
98 PF01429 MBD: Methyl-CpG bindi 28.7 47 0.001 26.6 2.3 10 323-332 9-18 (77)
99 PF04108 APG17: Autophagy prot 27.9 1E+02 0.0022 33.0 5.4 43 469-512 328-377 (412)
100 PRK00142 putative rhodanese-re 26.5 1.2E+02 0.0026 31.1 5.5 28 108-138 170-197 (314)
101 PF01807 zf-CHC2: CHC2 zinc fi 24.9 98 0.0021 25.9 3.7 35 113-149 54-88 (97)
102 cd01528 RHOD_2 Member of the R 24.7 1.4E+02 0.0031 24.4 4.7 36 100-138 47-84 (101)
103 PRK05320 rhodanese superfamily 24.6 1.3E+02 0.0029 29.9 5.2 28 108-138 174-201 (257)
104 PLN00180 NDF6 (NDH-dependent f 23.1 1.1E+02 0.0024 28.0 3.8 27 472-498 143-169 (180)
105 cd01397 HAT_MBD Methyl-CpG bin 22.4 94 0.002 24.9 2.9 10 324-333 5-14 (73)
106 cd01520 RHOD_YbbB Member of th 21.9 1.1E+02 0.0024 26.6 3.6 29 108-138 85-113 (128)
107 cd01525 RHOD_Kc Member of the 21.7 1.1E+02 0.0024 25.1 3.5 19 109-128 65-83 (105)
108 cd01447 Polysulfide_ST Polysul 21.5 93 0.002 25.3 3.0 28 107-137 59-86 (103)
109 KOG1530|consensus 21.2 2.6E+02 0.0057 25.1 5.7 25 100-125 76-104 (136)
110 PF02673 BacA: Bacitracin resi 20.7 93 0.002 31.1 3.2 27 117-145 159-185 (259)
111 cd01534 4RHOD_Repeat_3 Member 20.6 98 0.0021 25.1 2.9 28 108-138 55-82 (95)
112 PRK01415 hypothetical protein; 20.5 1.9E+02 0.0042 28.7 5.4 28 108-138 170-197 (247)
113 cd01529 4RHOD_Repeats Member o 20.3 95 0.0021 25.2 2.7 28 107-137 54-81 (96)
114 PF00581 Rhodanese: Rhodanese- 20.1 3E+02 0.0066 22.3 5.9 21 108-129 66-86 (113)
No 1
>KOG1891|consensus
Probab=100.00 E-value=1.4e-55 Score=406.25 Aligned_cols=230 Identities=44% Similarity=0.839 Sum_probs=197.7
Q ss_pred ccCCcchhhhhhhccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcC
Q psy3114 256 RRKPNNVMNARAETQADNLLLMSALSPSYISLHDIPDNMPYHFTPYPPQIPSISCHPSQQLHEASDELPLPPGWSIDFTL 335 (515)
Q Consensus 256 ~~~~~n~~~~~~e~~~~~~~~~~~~~~~~~~~~~lP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LP~gWe~~~~~ 335 (515)
++..+|+.++-++.++....+.+++.+.++...+++...-|..+.. .+++ ..+++.||||||...+|.
T Consensus 37 ~~~~g~~~~~~R~~s~~~~~l~~p~~~~~~~~~~~g~~a~~slq~~-----~s~~-------~~sedlPLPpgWav~~T~ 104 (271)
T KOG1891|consen 37 SHSIGNVEQGTRELSVIEKRLASPQPPRFQSLQTLGSEALMSLQQY-----RSSC-------DCSEDLPLPPGWAVEFTT 104 (271)
T ss_pred cCCCCCcccceehhhhhhhHhcCCCCCCcchhhccchhhhhhhhhc-----cccC-------CCcccCCCCCCcceeeEe
Confidence 4577888888888888888888887777777778876665554432 1111 135678999999999999
Q ss_pred CCceEEEeCCCCeeeccCCCccCCCCCCceEeecCCCceEEeeCCCCcccccCCCCCCCCCCcccccccCCCCCCC----
Q psy3114 336 RGRKYYIDHNTKTTHWSHPLEKEGLPTGWERIENPEYGVYFVNHITRQAQYEHPCAPHYIYQPEVRIALAPPPPPR---- 411 (515)
Q Consensus 336 ~G~~yy~~~~t~tt~w~~P~~~~~LP~gWe~~~~~~g~~yy~nh~t~~t~w~~P~~~~~~~~~~~~~~~~~~p~p~---- 411 (515)
.||.|||||+++||+|.||.+.++||+||++.+++..++||+||.+|+||++|||+.. .+.|... +||.
T Consensus 105 ~grkYYIDHn~~tTHW~HPlerEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~~s------~~~yt~s-ePp~~~~p 177 (271)
T KOG1891|consen 105 EGRKYYIDHNNRTTHWVHPLEREGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCISS------PIFYTES-EPPNVASP 177 (271)
T ss_pred cCceeEeecCCCcccccChhhhccCCcchhhccccccceeeeecccchhhhcCCCCCC------CceecCC-CCCcccCH
Confidence 9999999999999999999999999999999999999999999999999999999988 4444222 3221
Q ss_pred -CcccCCCCcccCCCCCCCCCCCCceEeeccCCchhhhhcccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3114 412 -HTQYQPHSVIVPANPYLNQEIPMWLSVYSRASQDLDHKLRWELFRLPELDCFNGMLTRLYKQELEDIVMRHEAYRSALL 490 (515)
Q Consensus 412 -~~~~~~~~~~~~~n~~~~~~~p~wl~~y~~~~~~~d~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~v~~~e~~r~~l~ 490 (515)
.+.+. +..+||||||...|||.||+||+.|++++||+|+|+||++++|+.|++||++|||||++|||+|||+||+||+
T Consensus 178 ~q~~~n-hnaLvpanpy~~~EiP~WL~vYa~adss~DHlL~w~lF~l~~L~~y~~ml~~LfkqEl~~IVk~YErYRrALi 256 (271)
T KOG1891|consen 178 SQVDLN-HNALVPANPYEEKEIPPWLLVYAQADSSLDHLLEWDLFNLEQLTEYEHMLMKLFKQELFDIVKKYERYRRALI 256 (271)
T ss_pred hHhhhh-hccccCCCchhhhhcCHHHHHHhcCccchhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 5589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcHHHHH
Q psy3114 491 CEMDRRLSQSQQDAR 505 (515)
Q Consensus 491 ~~~~~~~~~~~~~~~ 505 (515)
.|++||++++|+++|
T Consensus 257 lEknrRagqnQnqnQ 271 (271)
T KOG1891|consen 257 LEKNRRAGQNQNQNQ 271 (271)
T ss_pred HHHHHHhhhhhhccC
Confidence 999999999999875
No 2
>KOG1720|consensus
Probab=99.97 E-value=4.2e-31 Score=244.79 Aligned_cols=162 Identities=46% Similarity=0.864 Sum_probs=137.3
Q ss_pred CccchhhccCCceEEeCCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhcCCCceEEEEecCCCCCcchhhccCc
Q psy3114 1 MEKYERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGL 80 (515)
Q Consensus 1 ~~~~e~~~~gd~swI~p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~~~gI~~VV~L~~~~y~~~~~~~~gi 80 (515)
||+||+||+||||||+|++||++++|......-...|....= +..+..++ +++|+++|.|+...|+...+...||
T Consensus 42 ye~ye~ve~gdfnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~----~~~~~~~~-~~~v~s~vrln~~~yd~~~f~~~Gi 116 (225)
T KOG1720|consen 42 YEHYEAVENGDFNWIIPDRFIAFAGPHLKSRGIESGFPLHLP----QPYIQYFK-NNNVTSIVRLNKRLYDAKRFTDAGI 116 (225)
T ss_pred heeeeccCCCCcceeccchhhhhcCccccccchhhcccccCC----hhHHHHhh-hcccceEEEcCCCCCChHHhcccCc
Confidence 799999999999999999999999998553211122222111 12334455 7899999999999999999999999
Q ss_pred eEEEccCCCCCCCChHHHHHHHHHHHhc--CCCeEEEcCCCCChhhHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCChH
Q psy3114 81 DHVDFYFPDGTAPPNDILCEFIKVCEKY--KGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQ 158 (515)
Q Consensus 81 ~~~~~p~~D~~~P~~~~i~~fi~~~~~~--~~pVlVHC~aGvgRSgt~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~ 158 (515)
.|++++++|+.+|+.+.+.+|++.++.. ++.|+|||.+|+||||++||||||++.|+++.+||.+||..||++|++++
T Consensus 117 ~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpq 196 (225)
T KOG1720|consen 117 DHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQ 196 (225)
T ss_pred eeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHH
Confidence 9999999999999999999999887753 69999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHH
Q psy3114 159 Q-DWLKDVQH 167 (515)
Q Consensus 159 q-~Fl~~l~~ 167 (515)
| ..++++..
T Consensus 197 Q~~l~~~q~~ 206 (225)
T KOG1720|consen 197 QHKLLHKQRD 206 (225)
T ss_pred HHHHHHHHHH
Confidence 9 45555544
No 3
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.91 E-value=6.3e-24 Score=204.11 Aligned_cols=145 Identities=30% Similarity=0.569 Sum_probs=125.5
Q ss_pred CccchhhccCCceEEeCCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhcCCCceEEEEecCCCCCcchhhccCc
Q psy3114 1 MEKYERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGL 80 (515)
Q Consensus 1 ~~~~e~~~~gd~swI~p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~~~gI~~VV~L~~~~y~~~~~~~~gi 80 (515)
|.++++||.|++ +||++.+|+.. ++...|..|+ +.||+.||++++..|+...+...||
T Consensus 81 ~~~~~~ie~~~~------rfLi~~~P~~~---------------~~~~yl~eLk-~~gV~~lVrlcE~~Yd~~~~~~~GI 138 (241)
T PTZ00393 81 LNHPTKIEHGKI------KILILDAPTND---------------LLPLYIKEMK-NYNVTDLVRTCERTYNDGEITSAGI 138 (241)
T ss_pred cccchhhccCce------eEEEeCCCCHH---------------HHHHHHHHHH-HcCCCEEEECCCCCCCHHHHHHcCC
Confidence 678899999988 79999999943 3445677888 7999999999999999999999999
Q ss_pred eEEEccCCCCCCCChHHHHHHHHHHH---hcCCCeEEEcCCCCChhhHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCh
Q psy3114 81 DHVDFYFPDGTAPPNDILCEFIKVCE---KYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGV 157 (515)
Q Consensus 81 ~~~~~p~~D~~~P~~~~i~~fi~~~~---~~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~ 157 (515)
.+++++++|+.+|+.+.+..|++.+. ..+++|+|||.+|+||||+++|+|||. .|+++++|+++||+.||+++...
T Consensus 139 ~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgAIn~~ 217 (241)
T PTZ00393 139 NVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAINKR 217 (241)
T ss_pred eEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCCCHH
Confidence 99999999999999877666665544 468999999999999999999999997 79999999999999999998654
Q ss_pred HHHHHHHHHHH
Q psy3114 158 QQDWLKDVQHV 168 (515)
Q Consensus 158 ~q~Fl~~l~~~ 168 (515)
++.||.++...
T Consensus 218 Q~~fL~~y~~~ 228 (241)
T PTZ00393 218 QLQFLKAYKKK 228 (241)
T ss_pred HHHHHHHHHHh
Confidence 44999888643
No 4
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.91 E-value=2.6e-23 Score=193.25 Aligned_cols=143 Identities=26% Similarity=0.476 Sum_probs=119.6
Q ss_pred CceEEeCCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhcCCCceEEEEecCCCCCcchhhccCceEEEccCCCC
Q psy3114 11 DISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDG 90 (515)
Q Consensus 11 d~swI~p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~~~gI~~VV~L~~~~y~~~~~~~~gi~~~~~p~~D~ 90 (515)
.++||.+ +||+|..|.+. .+...+..|+ +.||++||++++..|+...+...|+.++++|++|+
T Consensus 10 ~~~~~~~-r~~~~~~P~~~---------------~~~~~l~~L~-~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~ 72 (166)
T PTZ00242 10 QIEYVLF-KFLILDAPSPS---------------NLPLYIKELQ-RYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDG 72 (166)
T ss_pred ceeeece-EEEEecCCCcc---------------cHHHHHHHHH-hCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCC
Confidence 4799996 59999999954 2234567788 78999999999988888888889999999999999
Q ss_pred CCCChHHHHHHH---HHHHh----cCCCeEEEcCCCCChhhHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCChHH-HHH
Q psy3114 91 TAPPNDILCEFI---KVCEK----YKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQ-DWL 162 (515)
Q Consensus 91 ~~P~~~~i~~fi---~~~~~----~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl 162 (515)
.+|+.+.+..|+ +.+.. .+++|+|||.+|+||||+||++|||..+++++++|++.+|++|+++++ ..| .||
T Consensus 73 ~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i~-~~Q~~~l 151 (166)
T PTZ00242 73 APPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAIN-QTQLQFL 151 (166)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCch-HHHHHHH
Confidence 999886554444 44433 389999999999999999999999998889999999999999999984 566 999
Q ss_pred HHHHHHHHH
Q psy3114 163 KDVQHVLQN 171 (515)
Q Consensus 163 ~~l~~~l~~ 171 (515)
.++......
T Consensus 152 ~~~~~~~~~ 160 (166)
T PTZ00242 152 KKYKPRKKA 160 (166)
T ss_pred HHHHHHhcc
Confidence 888755443
No 5
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.90 E-value=2.5e-23 Score=210.57 Aligned_cols=155 Identities=14% Similarity=0.256 Sum_probs=112.3
Q ss_pred ceEEe----CCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHh------hcC--C-----Cc------eEEEEec--
Q psy3114 12 ISWIV----PNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHL------KCP--N-----GV------QLVVRLN-- 66 (515)
Q Consensus 12 ~swI~----p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L------~~~--~-----gI------~~VV~L~-- 66 (515)
.|||- +++|||||+|+ .+|+.|||+|||++++. .|+|| +|. + |- -.|-.+.
T Consensus 81 AnyVdG~~~~~~fIaTQ~Pl---~~T~~dFW~MVwe~~~~-iIVMLt~~~e~kc~~~YWP~~~~~~~~~g~f~V~~~~~~ 156 (298)
T PHA02740 81 ARFVDGYDFEQKFICIINLC---EDACDKFLQALSDNKVQ-IIVLISRHADKKCFNQFWSLKEGCVITSDKFQIETLEII 156 (298)
T ss_pred EEEecCCCCCCcEEEecCCc---hhhHHHHHHHHHhcCCC-EEEEccccccccccccCCCCCCCCeEEECCEEEEEEEEE
Confidence 57773 67899999999 67999999999999776 33332 221 0 10 0111111
Q ss_pred -CCCCCcchh-------hccCceEEEcc-CCCCCCCCh-HHHHHHHHHHHh------------cCCCeEEEcCCCCChhh
Q psy3114 67 -QKNYDERKF-------TEAGLDHVDFY-FPDGTAPPN-DILCEFIKVCEK------------YKGPIAVHCKAGLGRTG 124 (515)
Q Consensus 67 -~~~y~~~~~-------~~~gi~~~~~p-~~D~~~P~~-~~i~~fi~~~~~------------~~~pVlVHC~aGvgRSg 124 (515)
...|....+ +.+.|.|++|. |||+++|.. ..+++|+..++. ..+||+|||++|+||||
T Consensus 157 ~~~~~~~~~l~l~~~~~~~r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTG 236 (298)
T PHA02740 157 IKPHFNLTLLSLTDKFGQAQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSA 236 (298)
T ss_pred ecCCEEEEEEEEEcCCCCcEEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhH
Confidence 112221111 23567888884 999999976 568888876542 24799999999999999
Q ss_pred HHHHHHHH-----HhcCCCHHHHHHHHHHhCCCCCCChHH-HHHHHHH-HHHH
Q psy3114 125 CLIGAYMI-----KHYKMSAMETIAWMRICRPGCVIGVQQ-DWLKDVQ-HVLQ 170 (515)
Q Consensus 125 t~iaayLm-----~~~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~-~~l~ 170 (515)
+|||++.+ ..+.+++.+++..+|++|+++|++.+| .|++++. .++.
T Consensus 237 tFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~yl~ 289 (298)
T PHA02740 237 VFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVFCYHLIAAYLK 289 (298)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHHHHHHHHHHHHH
Confidence 99999855 356899999999999999999999999 9999874 4444
No 6
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.88 E-value=1.2e-22 Score=206.65 Aligned_cols=151 Identities=19% Similarity=0.364 Sum_probs=109.4
Q ss_pred ceEEe----CCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhh---------cC-------CCc----eEEEE-ec
Q psy3114 12 ISWIV----PNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLK---------CP-------NGV----QLVVR-LN 66 (515)
Q Consensus 12 ~swI~----p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~---------~~-------~gI----~~VV~-L~ 66 (515)
.|||. +++|||||+|+ .+|+.|||+|||++++. .|+||. |. .+. ...|. +.
T Consensus 83 AsyI~g~~~~~~fIatQ~Pl---~~T~~dFW~MVw~~~~~-vIVmLt~~~E~g~~kc~~YWp~~~~~~~~~g~~~V~~~~ 158 (303)
T PHA02742 83 ASYVDGHNAKGRFICTQAPL---EETALDFWQAIFQDQVR-VIVMITKIMEDGKEACYPYWMPHERGKATHGEFKIKTKK 158 (303)
T ss_pred EeeecCCCCCCeEEEECCCC---cccHHHHHHHHhhcCCC-eEEEcchhhhCCeeeccccCCCCCCCceEEEEEEEEEEE
Confidence 46765 46899999999 67999999999999776 233321 10 010 01111 11
Q ss_pred ---CCCCCcchh--------hccCceEEEcc-CCCCCCCCh-HHHHHHHHHHHh---------------cCCCeEEEcCC
Q psy3114 67 ---QKNYDERKF--------TEAGLDHVDFY-FPDGTAPPN-DILCEFIKVCEK---------------YKGPIAVHCKA 118 (515)
Q Consensus 67 ---~~~y~~~~~--------~~~gi~~~~~p-~~D~~~P~~-~~i~~fi~~~~~---------------~~~pVlVHC~a 118 (515)
...|....+ ..+.|.|++|. |||+++|.. ..+++|+..++. ..+||+|||++
T Consensus 159 ~~~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsa 238 (303)
T PHA02742 159 IKSFRNYAVTNLCLTDTNTGASLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSA 238 (303)
T ss_pred EEEcCCEEEEEEEEEECCCCceEEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCC
Confidence 112222111 12347888885 999999976 568889887753 14799999999
Q ss_pred CCChhhHHHHHHHHH-----hcCCCHHHHHHHHHHhCCCCCCChHH-HHHHHHH
Q psy3114 119 GLGRTGCLIGAYMIK-----HYKMSAMETIAWMRICRPGCVIGVQQ-DWLKDVQ 166 (515)
Q Consensus 119 GvgRSgt~iaayLm~-----~~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~ 166 (515)
|+||||+|||++.+. ...+++.++++.+|++|+++|++.+| .|++.+.
T Consensus 239 GvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l 292 (303)
T PHA02742 239 GLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYIFCYFIV 292 (303)
T ss_pred CCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHHHHHHHH
Confidence 999999999997552 44789999999999999999999999 8999884
No 7
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.88 E-value=1.6e-22 Score=207.29 Aligned_cols=151 Identities=23% Similarity=0.332 Sum_probs=109.8
Q ss_pred ceEEe----CCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhh--------cC------------CCceEEE--Ee
Q psy3114 12 ISWIV----PNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLK--------CP------------NGVQLVV--RL 65 (515)
Q Consensus 12 ~swI~----p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~--------~~------------~gI~~VV--~L 65 (515)
.|||. +++|||||+|+ .+|+.|||+|||++++. .|+||. |. +|--.|- +.
T Consensus 103 AsyV~g~~~~~~fIaTQ~Pl---~~T~~dFW~MIwe~~v~-vIVMLt~~~e~~~kc~~YWP~~~~~~~~~g~~~V~~~~~ 178 (323)
T PHA02746 103 ANFVDGFKEANKFICAQGPK---EDTSEDFFKLISEHESQ-VIVSLTDIDDDDEKCFELWTKEEDSELAFGRFVAKILDI 178 (323)
T ss_pred EecccCCCCCCeEEEeCCCC---hhhHHHHHHHHHhhCCC-EEEEecccccCCccCCCCCCCCCCCCeEEcCEEEEEEEE
Confidence 47775 57999999999 67999999999998766 333331 10 0111111 11
Q ss_pred c-CCCCCcchh--------hccCceEEEcc-CCCCCCCCh-HHHHHHHHHHHhc--------------CCCeEEEcCCCC
Q psy3114 66 N-QKNYDERKF--------TEAGLDHVDFY-FPDGTAPPN-DILCEFIKVCEKY--------------KGPIAVHCKAGL 120 (515)
Q Consensus 66 ~-~~~y~~~~~--------~~~gi~~~~~p-~~D~~~P~~-~~i~~fi~~~~~~--------------~~pVlVHC~aGv 120 (515)
. ...|....+ ..+.|.|++|. |||+++|.. ..+++|+..++.. .+||+|||++|+
T Consensus 179 ~~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGv 258 (323)
T PHA02746 179 IEELSFTKTRLMITDKISDTSREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGI 258 (323)
T ss_pred EEcCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCC
Confidence 1 111211111 12457888885 999999986 5688888876531 379999999999
Q ss_pred ChhhHHHHHHHH-----HhcCCCHHHHHHHHHHhCCCCCCChHH-HHHHHHH
Q psy3114 121 GRTGCLIGAYMI-----KHYKMSAMETIAWMRICRPGCVIGVQQ-DWLKDVQ 166 (515)
Q Consensus 121 gRSgt~iaayLm-----~~~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~ 166 (515)
||||+|||++.+ ....+++.+++..||.+|+++|++.+| .|++++.
T Consensus 259 GRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~~l 310 (323)
T PHA02746 259 GRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYKAL 310 (323)
T ss_pred CcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 999999999754 245799999999999999999999999 9999884
No 8
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.87 E-value=6.1e-22 Score=202.17 Aligned_cols=154 Identities=23% Similarity=0.413 Sum_probs=109.0
Q ss_pred ceEEe----CCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhh----------cC-------CCc----eEEEEec
Q psy3114 12 ISWIV----PNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLK----------CP-------NGV----QLVVRLN 66 (515)
Q Consensus 12 ~swI~----p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~----------~~-------~gI----~~VV~L~ 66 (515)
.|||. +++|||||+|+ .+|+.|||+|||++++.. |++|. |. .+. ...|.+.
T Consensus 83 AsyV~g~~~~~~yIaTQ~Pl---~~T~~dFW~MVwe~~~~~-IVMLt~~~~e~g~~kc~~YWp~~~~~~~~~g~~~V~~~ 158 (312)
T PHA02747 83 ANWIDGFEDDKKFIATQGPF---AETCADFWKAVWQEHCSI-IVMLTPTKGTNGEEKCYQYWCLNEDGNIDMEDFRIETL 158 (312)
T ss_pred eeeecCCCCCCeEEEeCCCc---chhHHHHHHHHHhccCCE-EEEcccccccCCcccccccCCCCCCCCeEeeeEEEEEE
Confidence 58885 57899999999 669999999999987652 22221 10 010 0011111
Q ss_pred ----CCCCCcchh--------hccCceEEEc-cCCCCCCCCh-HHHHHHHHHHHh--------------cCCCeEEEcCC
Q psy3114 67 ----QKNYDERKF--------TEAGLDHVDF-YFPDGTAPPN-DILCEFIKVCEK--------------YKGPIAVHCKA 118 (515)
Q Consensus 67 ----~~~y~~~~~--------~~~gi~~~~~-p~~D~~~P~~-~~i~~fi~~~~~--------------~~~pVlVHC~a 118 (515)
...|..+.+ ..+.|.|++| .|||+++|.. ..+++|+..+.. ..+||+|||++
T Consensus 159 ~~~~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsa 238 (312)
T PHA02747 159 KTSVRAKYILTLIEITDKILKDSRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSD 238 (312)
T ss_pred EEEecCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecC
Confidence 122222221 1245788888 4999999976 557777765532 12799999999
Q ss_pred CCChhhHHHHHHHH-----HhcCCCHHHHHHHHHHhCCCCCCChHH-HHH---HHHHHHH
Q psy3114 119 GLGRTGCLIGAYMI-----KHYKMSAMETIAWMRICRPGCVIGVQQ-DWL---KDVQHVL 169 (515)
Q Consensus 119 GvgRSgt~iaayLm-----~~~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl---~~l~~~l 169 (515)
|+||||+|||+.++ ....+++.+++..+|.+|+++|++.+| .|+ +++..++
T Consensus 239 GvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~~~~Y~~l~~~ 298 (312)
T PHA02747 239 GVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLHYF 298 (312)
T ss_pred CCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999754 345889999999999999999999999 899 7775433
No 9
>KOG0790|consensus
Probab=99.86 E-value=1.2e-22 Score=205.32 Aligned_cols=164 Identities=27% Similarity=0.416 Sum_probs=122.1
Q ss_pred ccchhhccCCceEEeCCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHH--------------------HhhcCCCceE
Q psy3114 2 EKYERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIH--------------------HLKCPNGVQL 61 (515)
Q Consensus 2 ~~~e~~~~gd~swI~p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~--------------------~L~~~~gI~~ 61 (515)
++++++ ++-++-- ..|||+||=+ .+|..|||+|+|++|...+++ ++. .+|+-.
T Consensus 311 ~~~q~~--~~~~~~k-KsyIAtQGCL---~nTVnDFW~MvwQENsrVIVMtTkE~ERgK~KC~~YWPee~~~e-~~G~~~ 383 (600)
T KOG0790|consen 311 IEFQRL--CNNSKPK-KSYIATQGCL---QNTVNDFWRMVWQENSRVIVMTTKEVERGKSKCVKYWPEEGALE-EYGVMR 383 (600)
T ss_pred hhhhhc--cCccccc-cceeehhhHH---HHHHHHHHHHHHhccceEEEEehhhhhcccccccccCCcccchh-hcCceE
Confidence 344444 5555533 4799999999 679999999999998762221 122 357777
Q ss_pred EEEecC---CCCCcchhh---------ccCceEEEc-cCCCCCCCCh-HHHHHHHHHHHhc------CCCeEEEcCCCCC
Q psy3114 62 VVRLNQ---KNYDERKFT---------EAGLDHVDF-YFPDGTAPPN-DILCEFIKVCEKY------KGPIAVHCKAGLG 121 (515)
Q Consensus 62 VV~L~~---~~y~~~~~~---------~~gi~~~~~-p~~D~~~P~~-~~i~~fi~~~~~~------~~pVlVHC~aGvg 121 (515)
|-|+.+ .+|..+.+. .+.|.++|| .|||+|+|.. -.++.|++.+... -+||+|||+||||
T Consensus 384 v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIG 463 (600)
T KOG0790|consen 384 VRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIG 463 (600)
T ss_pred EEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcC
Confidence 777654 345444332 245778888 6999999988 4589999988752 5899999999999
Q ss_pred hhhHHHHHHHH----Hhc----CCCHHHHHHHHHHhCCCCCCChHH-HHHHHHH-HHHHHc
Q psy3114 122 RTGCLIGAYMI----KHY----KMSAMETIAWMRICRPGCVIGVQQ-DWLKDVQ-HVLQNV 172 (515)
Q Consensus 122 RSgt~iaayLm----~~~----~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~-~~l~~~ 172 (515)
||||||++.++ .+. .+++...|.+||++|.|+||+..| .|++... +++...
T Consensus 464 rTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~Avqhyietl 524 (600)
T KOG0790|consen 464 RTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAVQHYIETL 524 (600)
T ss_pred CcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHHHHHHHHHHH
Confidence 99999999754 333 467899999999999999999999 9998874 444443
No 10
>PHA02738 hypothetical protein; Provisional
Probab=99.86 E-value=8.3e-22 Score=201.75 Aligned_cols=151 Identities=23% Similarity=0.358 Sum_probs=108.7
Q ss_pred ceEEe----CCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhh---------cC------------CCceEEEEec
Q psy3114 12 ISWIV----PNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLK---------CP------------NGVQLVVRLN 66 (515)
Q Consensus 12 ~swI~----p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~---------~~------------~gI~~VV~L~ 66 (515)
.|||. +++|||||+|+ .+|+.|||+|||++++.. |++|. |. .|--.|-.+.
T Consensus 80 AsyVdg~~~~~kfI~TQ~Pl---~~T~~dFW~MVwe~~v~~-IVmL~~~~E~~~~kc~~YWp~~~~~~~~~g~f~V~~~~ 155 (320)
T PHA02738 80 ANYVDGFEYKKKFICGQAPT---RQTCYDFYRMLWMEHVQI-IVMLCKKKENGREKCFPYWSDVEQGSIRFGKFKITTTQ 155 (320)
T ss_pred eEEecCCCCCceeEEecCCC---hHHHHHHHHHHHHhCCcE-EEEeeehhhCCeeeccccCCCCCCCceEeccEEEEEEE
Confidence 58885 46899999999 679999999999987662 22221 00 0100111110
Q ss_pred ---CCCCCcchh-------hccCceEEEcc-CCCCCCCCh-HHHHHHHHHHHhc-----------------CCCeEEEcC
Q psy3114 67 ---QKNYDERKF-------TEAGLDHVDFY-FPDGTAPPN-DILCEFIKVCEKY-----------------KGPIAVHCK 117 (515)
Q Consensus 67 ---~~~y~~~~~-------~~~gi~~~~~p-~~D~~~P~~-~~i~~fi~~~~~~-----------------~~pVlVHC~ 117 (515)
...|....+ ..+.|.|++|. |||+++|.. ..+++|+..++.. .+||+|||+
T Consensus 156 ~~~~~~~~~~~l~l~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs 235 (320)
T PHA02738 156 VETHPHYVKSTLLLTDGTSATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCN 235 (320)
T ss_pred EEecCCeEEEEEEEEeCCCCcEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcC
Confidence 112221111 12447888885 999999976 5678888766531 369999999
Q ss_pred CCCChhhHHHHHHHH-----HhcCCCHHHHHHHHHHhCCCCCCChHH-HHHHHHH
Q psy3114 118 AGLGRTGCLIGAYMI-----KHYKMSAMETIAWMRICRPGCVIGVQQ-DWLKDVQ 166 (515)
Q Consensus 118 aGvgRSgt~iaayLm-----~~~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~ 166 (515)
+|+||||+|||+.++ ....+++.+++..||++|+++|++.+| .|++++.
T Consensus 236 ~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y~~l 290 (320)
T PHA02738 236 AGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAV 290 (320)
T ss_pred CCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHHHHHH
Confidence 999999999999854 245789999999999999999999999 8999884
No 11
>KOG0792|consensus
Probab=99.85 E-value=1.2e-21 Score=215.67 Aligned_cols=150 Identities=28% Similarity=0.452 Sum_probs=108.6
Q ss_pred CcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHH---------hhcCC------------C---ceEEEEecCCCCCcc
Q psy3114 18 NKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHH---------LKCPN------------G---VQLVVRLNQKNYDER 73 (515)
Q Consensus 18 ~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~---------L~~~~------------g---I~~VV~L~~~~y~~~ 73 (515)
+.|||+|||+ ..||.|||+|||++.+. .|+| .||.. | |+.+..-....|...
T Consensus 938 ~~YIA~QGPL---p~T~~DFWQMVWEQ~~~-lIvMlT~e~EggR~KchqYWPr~~~~t~~ygrf~v~~~~~~~t~~y~tr 1013 (1144)
T KOG0792|consen 938 NRYIACQGPL---PHTCTDFWQMVWEQGST-LIVMLTTEVEGGRVKCHQYWPRLGHETMEYGRFQVTCVFEQQTTCYVTR 1013 (1144)
T ss_pred EEEEEecCCC---cchHHHHHHHHHhcCce-EEEEEeehhhcCeeccccccCCCCccceeccceEEEEEEecccccEEEE
Confidence 5899999999 67999999999988443 1111 11110 1 111111111122211
Q ss_pred h--------hhccCceEEEcc-CCCCCCCCh-HHHHHHHHHHHh---c-CCCeEEEcCCCCChhhHHHHHHHHH-----h
Q psy3114 74 K--------FTEAGLDHVDFY-FPDGTAPPN-DILCEFIKVCEK---Y-KGPIAVHCKAGLGRTGCLIGAYMIK-----H 134 (515)
Q Consensus 74 ~--------~~~~gi~~~~~p-~~D~~~P~~-~~i~~fi~~~~~---~-~~pVlVHC~aGvgRSgt~iaayLm~-----~ 134 (515)
. -+.+.|.|++|. |||+++|++ +.+++|++.++. . +.||+|||+||+||||++|.+.++. .
T Consensus 1014 ~m~l~~~~t~eeR~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~N 1093 (1144)
T KOG0792|consen 1014 EMTLKDLQTREERTVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHN 1093 (1144)
T ss_pred eEEEeeccCCceeeeeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcC
Confidence 1 134678899995 999999988 668899988765 3 5699999999999999999886542 3
Q ss_pred cCCCHHHHHHHHHHhCCCCCCChHH-HHHHHHH-HHHHH
Q psy3114 135 YKMSAMETIAWMRICRPGCVIGVQQ-DWLKDVQ-HVLQN 171 (515)
Q Consensus 135 ~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~-~~l~~ 171 (515)
..+++.+++..||.+|..|||+..| .|++++. .++.+
T Consensus 1094 e~vdi~divr~mR~QR~~mVQT~~QYkFVyevil~~l~~ 1132 (1144)
T KOG0792|consen 1094 EPVDILDIVRTMRDQRAMMVQTLSQYKFVYEVILRVLKR 1132 (1144)
T ss_pred CCCCHHHHHHHHHHHHhhhccchHHhhHHHHHHHHHHHh
Confidence 5789999999999999999999999 9999983 44443
No 12
>KOG4228|consensus
Probab=99.85 E-value=8.6e-22 Score=219.04 Aligned_cols=218 Identities=22% Similarity=0.378 Sum_probs=147.4
Q ss_pred ceEEe----CCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHH--------HhhcCC----Cc----eEEEEecC----
Q psy3114 12 ISWIV----PNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIH--------HLKCPN----GV----QLVVRLNQ---- 67 (515)
Q Consensus 12 ~swI~----p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~--------~L~~~~----gI----~~VV~L~~---- 67 (515)
.|||- +++|||+|||+ .+|..|||+|||+++...+++ +-+|.. |. ...|.+.+
T Consensus 598 AnyIdGy~e~n~yIaaQgP~---~eTv~DFWRMVWEq~S~~IVMvTnl~E~~r~kC~qYWP~~t~~yGdi~V~~~~~~~~ 674 (1087)
T KOG4228|consen 598 ANYIDGYKEPNAYIAAQGPR---PETVGDFWRMVWEQKSAGIVMVTNLEEFSRVKCAQYWPEGTETYGDIKVTLVQTKPL 674 (1087)
T ss_pred eeeeecccccccceeccCCc---ccchHHHHHHheeccCCcEEEEecccccccccccccCCCCccccccccccceeeeee
Confidence 45655 69999999999 668999999999986542111 011100 00 00111110
Q ss_pred CCCCcchhh--------ccCceEEEcc-CCCCCCCCh-HHHHHHHHHHHhc----CCCeEEEcCCCCChhhHHHHHHHH-
Q psy3114 68 KNYDERKFT--------EAGLDHVDFY-FPDGTAPPN-DILCEFIKVCEKY----KGPIAVHCKAGLGRTGCLIGAYMI- 132 (515)
Q Consensus 68 ~~y~~~~~~--------~~gi~~~~~p-~~D~~~P~~-~~i~~fi~~~~~~----~~pVlVHC~aGvgRSgt~iaayLm- 132 (515)
.+|..+.|. .+.|.++||. |||+++|.. ..++.|++.++.. .|||+|||+||+||||+|++++-|
T Consensus 675 a~y~iRtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml 754 (1087)
T KOG4228|consen 675 AEYGIRTFALKKQGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAML 754 (1087)
T ss_pred ccceEEeeeccccCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHH
Confidence 122222221 3457889995 999999988 6689999998874 499999999999999999999754
Q ss_pred ----HhcCCCHHHHHHHHHHhCCCCCCChHH-HHHHHHH---HHHHHcCcchhHHHHhhhccccCCCCCcchhHHhhhhc
Q psy3114 133 ----KHYKMSAMETIAWMRICRPGCVIGVQQ-DWLKDVQ---HVLQNVGDKYRSIRQRTTNIQRHPYGIYSKKWKAKQAL 204 (515)
Q Consensus 133 ----~~~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (515)
.++.+++.+-+..+|.+|..+|++.+| .|+++.. ..++.+...++.+..++..+.+
T Consensus 755 ~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~~~G~T~i~~~~~~~~~~~l~~---------------- 818 (1087)
T KOG4228|consen 755 DRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALLEACLCGDTEVPASTLAPYSQKLKR---------------- 818 (1087)
T ss_pred HHHHhhCccceechhHHHHhccccccccHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHhcc----------------
Confidence 356899999999999999999999999 8999883 4444555556666655543222
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhHhcccCccccccccCCcchhhhhhhcc
Q psy3114 205 DTRSPGMGALTPNKENSPVRGRGVHTAPAIPKREQNNFVLANIKKPLTTLCRRKPNNVMNARAETQ 270 (515)
Q Consensus 205 ~~~~p~~~~l~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~t~~~~~~~~n~~~~~~e~~ 270 (515)
..| ..-..++++++..+........-..|+++++|..+||...-
T Consensus 819 --~~p--------------------~~~~t~le~EF~~L~~~~~~~~~~~~~~l~~N~~KNR~~~i 862 (1087)
T KOG4228|consen 819 --IDP--------------------PENKTGLEEEFKTLNSCKPRTRMMICGNLPENKSKNRQVNI 862 (1087)
T ss_pred --CCC--------------------CCCCcchHHHHHHHhhccccchhhhccccchhccccccccc
Confidence 001 11123455666666555555555566889999999877643
No 13
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.84 E-value=8.7e-21 Score=188.91 Aligned_cols=152 Identities=27% Similarity=0.441 Sum_probs=110.0
Q ss_pred CceEEe----CCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhc--------------------CCCceEEEEec
Q psy3114 11 DISWIV----PNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKC--------------------PNGVQLVVRLN 66 (515)
Q Consensus 11 d~swI~----p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~--------------------~~gI~~VV~L~ 66 (515)
|.|||. +++||++|+|+ .+|+.|||+|||++++.. |++|.. ..|--.|-+..
T Consensus 58 nAs~v~~~~~~~~fI~tQ~P~---~~t~~dFW~mv~~~~~~~-IVmL~~~~e~~~~~~~~Ywp~~~~~~~~g~~~V~~~~ 133 (258)
T smart00194 58 NASYIDGPNGPKAYIATQGPL---PSTVEDFWRMVWEEKVTT-IVMLTELEEKGREKCAQYWPEEEEPLTYGDITVTLKS 133 (258)
T ss_pred eeeeEecCCCccceEEeCCCc---hHHHHHHHHHHHhcCCCE-EEEeccceeCCEeeccccCCCCCCcceECCEEEEEEE
Confidence 457876 46899999999 679999999999886652 222110 01111111111
Q ss_pred ---CCCCCcchh--------hccCceEEEcc-CCCCCCCCh-HHHHHHHHHHHhc----CCCeEEEcCCCCChhhHHHHH
Q psy3114 67 ---QKNYDERKF--------TEAGLDHVDFY-FPDGTAPPN-DILCEFIKVCEKY----KGPIAVHCKAGLGRTGCLIGA 129 (515)
Q Consensus 67 ---~~~y~~~~~--------~~~gi~~~~~p-~~D~~~P~~-~~i~~fi~~~~~~----~~pVlVHC~aGvgRSgt~iaa 129 (515)
...+....+ ..+.+.++++. |+|+++|.. ..+++|+..++.. ++||+|||.+|+||||+|||+
T Consensus 134 ~~~~~~~~~~~l~v~~~~~~~~~~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~ 213 (258)
T smart00194 134 VEKVDDYTIRTLEVTNTGCSETRTVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAI 213 (258)
T ss_pred EEecCCEEEEEEEEEECCCCCcEEEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHH
Confidence 011111111 12447788884 999999955 6788999888764 789999999999999999999
Q ss_pred HHHH-----hcCCCHHHHHHHHHHhCCCCCCChHH-HHHHHHH
Q psy3114 130 YMIK-----HYKMSAMETIAWMRICRPGCVIGVQQ-DWLKDVQ 166 (515)
Q Consensus 130 yLm~-----~~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~ 166 (515)
+++. ...+++.++++.||++|+++|++++| .|++.+.
T Consensus 214 ~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~~~~l 256 (258)
T smart00194 214 DILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFLYRAI 256 (258)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhccccccCCHHHHHHHHHHH
Confidence 8763 35799999999999999999999999 8888764
No 14
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.83 E-value=2.9e-20 Score=182.02 Aligned_cols=152 Identities=29% Similarity=0.471 Sum_probs=110.0
Q ss_pred CceEEe----CCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhh---------c-----------CCCceEEEEec
Q psy3114 11 DISWIV----PNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLK---------C-----------PNGVQLVVRLN 66 (515)
Q Consensus 11 d~swI~----p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~---------~-----------~~gI~~VV~L~ 66 (515)
|.|||. +++||++|+|+ .+|+.+||+|+|++++.. |.+|. | ..|--.|-+..
T Consensus 30 nA~~v~~~~~~~~fI~tQ~P~---~~t~~~FW~mv~~~~~~~-IV~l~~~~e~~~~~~~~Ywp~~~~~~~~g~~~V~~~~ 105 (231)
T cd00047 30 NASYIDGYNPPKAYIATQGPL---PNTVEDFWRMVWEQKVPV-IVMLTELVEKGREKCAQYWPEEEGSLTYGDITVTLVS 105 (231)
T ss_pred EeeeEecCCCCcceEEcCCCC---hhhHHHHHHHHHhcCCCE-EEEccccccCCCccCccCCCCCCCCeEecCEEEEEEE
Confidence 347776 47899999999 569999999999886552 11111 0 01111111111
Q ss_pred ---CCCCCcch--------hhccCceEEEcc-CCCCCCCCh-HHHHHHHHHHHhc-----CCCeEEEcCCCCChhhHHHH
Q psy3114 67 ---QKNYDERK--------FTEAGLDHVDFY-FPDGTAPPN-DILCEFIKVCEKY-----KGPIAVHCKAGLGRTGCLIG 128 (515)
Q Consensus 67 ---~~~y~~~~--------~~~~gi~~~~~p-~~D~~~P~~-~~i~~fi~~~~~~-----~~pVlVHC~aGvgRSgt~ia 128 (515)
...+.... -..+.+.|+++. |+|+++|.. ..+++|++.++.. ++||+|||.+|+||||+|||
T Consensus 106 ~~~~~~~~~~~l~i~~~~~~~~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a 185 (231)
T cd00047 106 EEKLDDYTVRTLKLSNTGTGETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIA 185 (231)
T ss_pred EEEcCCEEEEEEEEEECCCCCceEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHH
Confidence 01111111 123557888885 999999987 6788999888765 78999999999999999999
Q ss_pred HHHHHh-----cCCCHHHHHHHHHHhCCCCCCChHH-HHHHHHH
Q psy3114 129 AYMIKH-----YKMSAMETIAWMRICRPGCVIGVQQ-DWLKDVQ 166 (515)
Q Consensus 129 ayLm~~-----~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~ 166 (515)
++++.. ..+++.+++..+|++|+++|++++| .|++.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~~~~Qy~f~~~~l 229 (231)
T cd00047 186 IDILLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFLYRAI 229 (231)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHHHHHH
Confidence 987532 3799999999999999999999999 8888764
No 15
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.82 E-value=2.2e-20 Score=194.94 Aligned_cols=153 Identities=19% Similarity=0.153 Sum_probs=107.6
Q ss_pred eEEeCCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhh---------c--------CCCceEEEEecC----CCCC
Q psy3114 13 SWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLK---------C--------PNGVQLVVRLNQ----KNYD 71 (515)
Q Consensus 13 swI~p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~---------~--------~~gI~~VV~L~~----~~y~ 71 (515)
+|...+++|++|.|++. .+|+.|||+|||++++. .|+||. | .+|--.|-+... ..+.
T Consensus 329 ~~~~k~~aIa~QYP~nt-~eTieDFWrMVWEn~~~-VIVMLT~l~E~g~~KC~pYW~~s~tYGdItVts~seesls~g~i 406 (535)
T PRK15375 329 TFDGKPVALAGSYPKNT-PDALEAHMKMLLEKECS-CLVVLTSEDQMQAKQLPPYFRGSYTFGEVHTNSQKVSSASQGEA 406 (535)
T ss_pred eecCccceEeccCCCCc-hhhHHHHHHHHHHcCCC-EEEEeeccccCcccccCccCCCcceeccEEEEEEEEEeccCCce
Confidence 45557789999999854 35899999999999776 333322 1 012112211111 1122
Q ss_pred cchh-------hc-cCceEEEcc-CCCCCCCCh-HHHHHHHHHHHhc---C---------CCeEEEcCCCCChhhHHHHH
Q psy3114 72 ERKF-------TE-AGLDHVDFY-FPDGTAPPN-DILCEFIKVCEKY---K---------GPIAVHCKAGLGRTGCLIGA 129 (515)
Q Consensus 72 ~~~~-------~~-~gi~~~~~p-~~D~~~P~~-~~i~~fi~~~~~~---~---------~pVlVHC~aGvgRSgt~iaa 129 (515)
.+.+ +. +.|.++||. |||+++|+. +.++.|++.++.. + ++.+|||+||+||||+|||+
T Consensus 407 IR~f~L~Ik~~E~R~tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi 486 (535)
T PRK15375 407 IDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAA 486 (535)
T ss_pred EEEEEEEEecCCceeEEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHH
Confidence 2221 11 247899995 999999876 5577888776542 1 23479999999999999999
Q ss_pred HHHHh-cCCCHHHHHHHHHHhCCC-CCCChHH-HHHHHHHH
Q psy3114 130 YMIKH-YKMSAMETIAWMRICRPG-CVIGVQQ-DWLKDVQH 167 (515)
Q Consensus 130 yLm~~-~~~s~~~Ai~~vR~~Rp~-~v~~~~q-~Fl~~l~~ 167 (515)
+++.. ...++++++..+|.+|++ |||+.+| .++..+..
T Consensus 487 ~llk~~~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~~~ 527 (535)
T PRK15375 487 LVLKDNPHSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQA 527 (535)
T ss_pred HHHhccccCCHHHHHHHHHhcCCccccccHHHHHHHHHHHH
Confidence 99863 368999999999999999 9999999 88887743
No 16
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.79 E-value=2.3e-19 Score=171.99 Aligned_cols=157 Identities=24% Similarity=0.345 Sum_probs=106.0
Q ss_pred CceEEe--CCcEEeeCCCCCCCCCCcCCCCcchhhhhhHH-HHHH---------hhcC----C--------CceEEEEec
Q psy3114 11 DISWIV--PNKLLAFSGPNTTEQNTCYHPPEKEWSENMSR-KIHH---------LKCP----N--------GVQLVVRLN 66 (515)
Q Consensus 11 d~swI~--p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~-~i~~---------L~~~----~--------gI~~VV~L~ 66 (515)
|.|+|- -+.|||+|||. .+|..+||+|+|.+.... .|+| .+|. . |...++.+.
T Consensus 83 NAS~ik~~~~~yIAtQgP~---~~t~ddFW~mvw~n~~~~gvIVmLt~l~E~~rekc~qYWp~~~~~~~~~G~~v~~~~~ 159 (302)
T COG5599 83 NASYIKTPRGKYIATQGPK---PETIDDFWKMVWHNVPNNGVIVMLTSLPEYNREKCDQYWPLGYDDTLIIGLRVIKQKK 159 (302)
T ss_pred cceeeecCCCceEEecCCC---CchHHHHHHHHHhcCCCceEEEEecChHHHhHHHHhhhCCCCcCcceeeeeEEEEEec
Confidence 456653 36799999999 568999999999884310 1111 1111 0 111111111
Q ss_pred CCCCC-----cch-------hhccCceEEEcc-CCCCCCCChHHHHHHHHHHHh---cCCCeEEEcCCCCChhhHHHHHH
Q psy3114 67 QKNYD-----ERK-------FTEAGLDHVDFY-FPDGTAPPNDILCEFIKVCEK---YKGPIAVHCKAGLGRTGCLIGAY 130 (515)
Q Consensus 67 ~~~y~-----~~~-------~~~~gi~~~~~p-~~D~~~P~~~~i~~fi~~~~~---~~~pVlVHC~aGvgRSgt~iaay 130 (515)
.+... ... .....|.|++|. |.|...|+...+.++++.+.. ..+|++|||+||+||||||||++
T Consensus 160 ~e~~~d~~~~~~~f~L~~~~~~~k~Ihhf~y~nW~D~~~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD 239 (302)
T COG5599 160 YELFNDNIVNVHNFELTSINGPPKKIHHFQYINWVDFNVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALD 239 (302)
T ss_pred ccccccceeeeeecccccCCCCccEEEEEEecCccccCCcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHH
Confidence 11111 111 112446677775 999999977777788887763 47999999999999999999998
Q ss_pred HHHhc---C--------C---CHHHHHHHHHHhCCCCCCChHH-HHHHHHHHHHH
Q psy3114 131 MIKHY---K--------M---SAMETIAWMRICRPGCVIGVQQ-DWLKDVQHVLQ 170 (515)
Q Consensus 131 Lm~~~---~--------~---s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~~~l~ 170 (515)
.+... . . .+++.+..+|++|..|||+..| .|++.+...+.
T Consensus 240 ~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 240 ILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred HHHhccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55321 1 1 2578899999999999999999 99999865554
No 17
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.78 E-value=3e-18 Score=154.28 Aligned_cols=114 Identities=25% Similarity=0.355 Sum_probs=93.6
Q ss_pred HHHhhcCCCceEEEEecCCCCCcchhhccCceEEEccCCCCCCCCh----HHHHHHHHHHHhcCCCeEEEcCCCCChhhH
Q psy3114 50 IHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPN----DILCEFIKVCEKYKGPIAVHCKAGLGRTGC 125 (515)
Q Consensus 50 i~~L~~~~gI~~VV~L~~~~y~~~~~~~~gi~~~~~p~~D~~~P~~----~~i~~fi~~~~~~~~pVlVHC~aGvgRSgt 125 (515)
+..|+ +.||++||||+...... ...++.|+++|+.|....+. +.+.+|++.+...+++|+|||.+|+||||+
T Consensus 19 ~~~l~-~~gi~~Vi~l~~~~~~~---~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 94 (138)
T smart00195 19 LALLK-KLGITHVINVTNEVPNL---NKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSAT 94 (138)
T ss_pred HHHHH-HcCCCEEEEccCCCCCC---CCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHH
Confidence 34556 68999999998764432 35789999999999543332 446788888888899999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q psy3114 126 LIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQHVL 169 (515)
Q Consensus 126 ~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~q~Fl~~l~~~l 169 (515)
++++|||...++++++|++++|++|+.+. ++..|+.+|..|.
T Consensus 95 v~~~yl~~~~~~~~~~A~~~v~~~R~~~~--p~~~~~~qL~~~e 136 (138)
T smart00195 95 LIIAYLMKYRNLSLNDAYDFVKDRRPIIS--PNFGFLRQLIEYE 136 (138)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHCCccC--CCHhHHHHHHHHh
Confidence 99999999999999999999999998666 6778888886553
No 18
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.77 E-value=5.4e-18 Score=152.33 Aligned_cols=133 Identities=21% Similarity=0.328 Sum_probs=105.1
Q ss_pred ceEEeCCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhcCCCceEEEEecCCCCCcchhhccCceEEEccCCCCC
Q psy3114 12 ISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGT 91 (515)
Q Consensus 12 ~swI~p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~~~gI~~VV~L~~~~y~~~~~~~~gi~~~~~p~~D~~ 91 (515)
++.|.|+.|++.. |... ++..|+ ..||++||||+...+. ......|+.++++++.|..
T Consensus 2 ~~~i~~~l~~g~~-~~~~-------------------d~~~L~-~~gi~~VI~l~~~~~~-~~~~~~~~~~~~~~~~D~~ 59 (139)
T cd00127 2 LSEITPGLYLGSY-PAAS-------------------DKELLK-KLGITHVLNVAKEVPN-ENLFLSDFNYLYVPILDLP 59 (139)
T ss_pred cCEEcCCeEECCh-hHhc-------------------CHHHHH-HcCCCEEEEcccCCCC-cccCCCCceEEEEEceeCC
Confidence 5678888666643 3311 244566 6899999999876544 3445689999999988876
Q ss_pred CCCh----HHHHHHHHHHHhcCCCeEEEcCCCCChhhHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Q psy3114 92 APPN----DILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQH 167 (515)
Q Consensus 92 ~P~~----~~i~~fi~~~~~~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~q~Fl~~l~~ 167 (515)
.+.. +.+.+|++.....+++|+|||.+|+||||++|++|||...++++.+|++++|++|+.+. ++..|+.+|..
T Consensus 60 ~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~--~~~~~~~~l~~ 137 (139)
T cd00127 60 SQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIIS--PNAGFMRQLKE 137 (139)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccC--CCHHHHHHHHH
Confidence 4443 33578888777788999999999999999999999999999999999999999999654 67888888865
Q ss_pred H
Q psy3114 168 V 168 (515)
Q Consensus 168 ~ 168 (515)
|
T Consensus 138 ~ 138 (139)
T cd00127 138 Y 138 (139)
T ss_pred h
Confidence 4
No 19
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.73 E-value=3.3e-17 Score=146.37 Aligned_cols=116 Identities=28% Similarity=0.447 Sum_probs=94.3
Q ss_pred HHhhcCCCceEEEEecCCCCCcchhhccCceEEEccCCCC-CCCCh---HHHHHHHHHHHhcCCCeEEEcCCCCChhhHH
Q psy3114 51 HHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDG-TAPPN---DILCEFIKVCEKYKGPIAVHCKAGLGRTGCL 126 (515)
Q Consensus 51 ~~L~~~~gI~~VV~L~~~~y~~~~~~~~gi~~~~~p~~D~-~~P~~---~~i~~fi~~~~~~~~pVlVHC~aGvgRSgt~ 126 (515)
..++ +.||++|||++............++.++++|+.|. ..+.. +.+.+||+.....+++|+|||.+|+||||++
T Consensus 12 ~~l~-~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 90 (133)
T PF00782_consen 12 AFLK-NLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAV 90 (133)
T ss_dssp HHHH-HTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHH
T ss_pred HHHH-HCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHH
Confidence 4455 68999999999765443445667899999998883 33322 4467888888888999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q psy3114 127 IGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQHVL 169 (515)
Q Consensus 127 iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~q~Fl~~l~~~l 169 (515)
+++|||...++++++|++++|+.||.+. ++..|+.+|..+.
T Consensus 91 ~~ayLm~~~~~~~~~A~~~v~~~rp~~~--~~~~~~~~L~~~e 131 (133)
T PF00782_consen 91 AAAYLMKKNGMSLEEAIEYVRSRRPQIN--PNPSFIRQLYEYE 131 (133)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHHSTTST--HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCCCCC--CCHHHHHHHHHhh
Confidence 9999999999999999999999998665 6767777776554
No 20
>KOG0791|consensus
Probab=99.73 E-value=7.4e-18 Score=168.78 Aligned_cols=147 Identities=24% Similarity=0.389 Sum_probs=106.6
Q ss_pred CCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHH--------HhhcC-----------CCceEEEEecCCCC---Ccc-
Q psy3114 17 PNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIH--------HLKCP-----------NGVQLVVRLNQKNY---DER- 73 (515)
Q Consensus 17 p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~--------~L~~~-----------~gI~~VV~L~~~~y---~~~- 73 (515)
+..|||+|||+ .++..+||+|+|+.++..++. +.+|+ +|--.|..+.+..+ ...
T Consensus 164 ~~~fIAtQGPl---p~t~~~fW~mvwq~~~~~IVmlt~~~e~~R~kc~~ywP~~~~~~~~gdi~V~~v~e~~~~~w~ir~ 240 (374)
T KOG0791|consen 164 PREFIATQGPL---PETRDDFWKMVWQQKSHIIVMLTKCNEKGRVKCDEYWPDEEVPVAYGDITVTMVSEESLDEWTIRE 240 (374)
T ss_pred cceEEEeeCCC---CCChhHHHHHHHHhhcceEEEEeecccccchhhhhhcccccccceeccEEEEEechhhcCCceEEE
Confidence 46899999999 668999999999975542211 11111 12222222222111 111
Q ss_pred -----hhhccCceEEEc-cCCCCCCCCh-HHHHHHHHHHHh----cCCCeEEEcCCCCChhhHHHHHHHHH-----hcCC
Q psy3114 74 -----KFTEAGLDHVDF-YFPDGTAPPN-DILCEFIKVCEK----YKGPIAVHCKAGLGRTGCLIGAYMIK-----HYKM 137 (515)
Q Consensus 74 -----~~~~~gi~~~~~-p~~D~~~P~~-~~i~~fi~~~~~----~~~pVlVHC~aGvgRSgt~iaayLm~-----~~~~ 137 (515)
....+.++++++ .|||+++|.. ..++.|++.++. ..+|++|||+||+||||||+|+..+. ...+
T Consensus 241 ~~l~~~~~sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~v 320 (374)
T KOG0791|consen 241 FRLNYAGESRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETV 320 (374)
T ss_pred EeeecccccceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccc
Confidence 223456788888 5999999955 557788887664 46899999999999999999997542 2367
Q ss_pred CHHHHHHHHHHhCCCCCCChHH-HHHHHHH
Q psy3114 138 SAMETIAWMRICRPGCVIGVQQ-DWLKDVQ 166 (515)
Q Consensus 138 s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~ 166 (515)
++..++..+|.+|+.||++..| .||++..
T Consensus 321 di~~iv~~lR~~R~~mVqte~Qyvfl~~c~ 350 (374)
T KOG0791|consen 321 DIFGVVLELRSARMLMVQTEDQYVFLHQCV 350 (374)
T ss_pred cHHHHHHHhhhccccccchHHHHHHHHHHH
Confidence 8999999999999999999999 9999984
No 21
>KOG2836|consensus
Probab=99.73 E-value=6e-17 Score=140.07 Aligned_cols=131 Identities=28% Similarity=0.513 Sum_probs=113.4
Q ss_pred CcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhcCCCceEEEEecCCCCCcchhhccCceEEEccCCCCCCCChHH
Q psy3114 18 NKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDI 97 (515)
Q Consensus 18 ~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~~~gI~~VV~L~~~~y~~~~~~~~gi~~~~~p~~D~~~P~~~~ 97 (515)
-+|+.|..|.+. .+...|+.|+ ++|+++||.+|+..|+...++..||.++..++.|+..|....
T Consensus 17 MrFLIThnPtna---------------Tln~fieELk-KygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~qv 80 (173)
T KOG2836|consen 17 MRFLITHNPTNA---------------TLNKFIEELK-KYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPNQV 80 (173)
T ss_pred eEEEEecCCCch---------------hHHHHHHHHH-hcCCeEEEEecccccCCchhhhcCceEeecccccCCCCchHH
Confidence 368889989843 2344678888 899999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHh-----cCCCeEEEcCCCCChhhHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCChHHHHHHHH
Q psy3114 98 LCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165 (515)
Q Consensus 98 i~~fi~~~~~-----~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~q~Fl~~l 165 (515)
+.+++..+.. .+..|.|||-||+||+.+++|+-|+. .|+..++|++++|++|.|++.+.+..||+..
T Consensus 81 v~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie-~gmkyedave~ir~krrga~n~kql~~leky 152 (173)
T KOG2836|consen 81 VDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIE-AGMKYEDAVEMIRQKRRGAINSKQLLYLEKY 152 (173)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHH-ccccHHHHHHHHHHHhhccccHHHHHHHHHh
Confidence 7777776543 47789999999999999999999886 8999999999999999999987777888766
No 22
>KOG1718|consensus
Probab=99.73 E-value=2.9e-17 Score=147.50 Aligned_cols=135 Identities=23% Similarity=0.365 Sum_probs=109.1
Q ss_pred cCCceEEeCCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhcCCCceEEEEecCCCCCcchhhccCceEEEccCC
Q psy3114 9 FGDISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFP 88 (515)
Q Consensus 9 ~gd~swI~p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~~~gI~~VV~L~~~~y~~~~~~~~gi~~~~~p~~ 88 (515)
.|-+|-|+|..||+ .|-.... -..++ ++||++|||.+.+... ....+++|..++..
T Consensus 14 ~~~~SqIt~sLfl~-~GvaA~~-------------------k~~l~-~~~It~IiNat~E~pn---~~l~~~qy~kv~~~ 69 (198)
T KOG1718|consen 14 IGGMSQITPSLFLS-NGVAAND-------------------KLLLK-KRKITCIINATTEVPN---TSLPDIQYMKVPLE 69 (198)
T ss_pred ccchhhcCcceeEe-ccccccC-------------------HHHHH-hcCceEEEEcccCCCC---ccCCCceeEEEEcc
Confidence 46789999999988 2222111 11344 6899999999865333 33467889999988
Q ss_pred CCCCCCh------HHHHHHHHHHHhcCCCeEEEcCCCCChhhHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCChHHHHH
Q psy3114 89 DGTAPPN------DILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWL 162 (515)
Q Consensus 89 D~~~P~~------~~i~~fi~~~~~~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~q~Fl 162 (515)
|. |.. +.+.+.|+.+...+|.+||||.||++||+++|.+|||+..++++.+|..+++.+|| +..||-+|+
T Consensus 70 D~--p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~Rp--iIRPN~GFw 145 (198)
T KOG1718|consen 70 DT--PQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRP--IIRPNVGFW 145 (198)
T ss_pred cC--CcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCc--eeCCCccHH
Confidence 87 433 55778888888899999999999999999999999999999999999999999999 778999999
Q ss_pred HHHHHHHHH
Q psy3114 163 KDVQHVLQN 171 (515)
Q Consensus 163 ~~l~~~l~~ 171 (515)
+||..+..+
T Consensus 146 ~QLi~YE~q 154 (198)
T KOG1718|consen 146 RQLIDYEQQ 154 (198)
T ss_pred HHHHHHHHH
Confidence 999766554
No 23
>KOG0793|consensus
Probab=99.72 E-value=4e-18 Score=180.08 Aligned_cols=139 Identities=27% Similarity=0.430 Sum_probs=107.1
Q ss_pred CceEEeC-----CcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhcCCCceEEEEec-------------------
Q psy3114 11 DISWIVP-----NKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLN------------------- 66 (515)
Q Consensus 11 d~swI~p-----~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~~~gI~~VV~L~------------------- 66 (515)
|.|-|+. -.|||+|||+ .+|++|||+|||+. |+..||+|+
T Consensus 791 NAS~I~DhDPR~paYIAtQgPl---~stiA~FWQmvWe~-------------G~~vIV~Lt~l~Engv~qc~rYWPdeGs 854 (1004)
T KOG0793|consen 791 NASPIMDHDPRNPAYIATQGPL---PSTIADFWQMVWES-------------GCVVIVMLTPLAENGVRQCYRYWPDEGS 854 (1004)
T ss_pred cccccccCCCCccceeeccCCC---chHHHHHHHHHHHc-------------CcEEEEEecChhhcchhhhhhcCCCCCc
Confidence 4566662 2699999999 56999999999976 444444443
Q ss_pred -----------C-----CCCCcchhh--------ccCceEEEc-cCCCCCCCCh-HHHHHHHHHHHh----cCCCeEEEc
Q psy3114 67 -----------Q-----KNYDERKFT--------EAGLDHVDF-YFPDGTAPPN-DILCEFIKVCEK----YKGPIAVHC 116 (515)
Q Consensus 67 -----------~-----~~y~~~~~~--------~~gi~~~~~-p~~D~~~P~~-~~i~~fi~~~~~----~~~pVlVHC 116 (515)
. ++|-++.|. .+.|+.+|| .|++.++|.+ ..+++|-+++.+ ...||+|||
T Consensus 855 elyhiyEV~LVSEHIWceDfLVRSFYLKNlqtseTRTvTQFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~ 934 (1004)
T KOG0793|consen 855 ELYHIYEVNLVSEHIWCEDFLVRSFYLKNLQTSETRTVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHC 934 (1004)
T ss_pred ceeeeEEeeeehhhhhhhhHHHHHHHHhhcccccceeeeeeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEc
Confidence 1 112222221 355777887 7999999988 668999999886 368999999
Q ss_pred CCCCChhhHHHHHHHHHh------cCCCHHHHHHHHHHhCCCCCCChHH-HHHHHH
Q psy3114 117 KAGLGRTGCLIGAYMIKH------YKMSAMETIAWMRICRPGCVIGVQQ-DWLKDV 165 (515)
Q Consensus 117 ~aGvgRSgt~iaayLm~~------~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l 165 (515)
++|.||||+.|++.++.. +.+++...++++|.+|+|+|.+.+| .|....
T Consensus 935 sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQFef~l~a 990 (1004)
T KOG0793|consen 935 SDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQFEFALTA 990 (1004)
T ss_pred cCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhhHHHHHH
Confidence 999999999999986532 2578999999999999999999999 777655
No 24
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.72 E-value=7.1e-18 Score=164.41 Aligned_cols=140 Identities=25% Similarity=0.506 Sum_probs=106.4
Q ss_pred CceEEe----CCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhcCCCceEEEEecC-------------------
Q psy3114 11 DISWIV----PNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQ------------------- 67 (515)
Q Consensus 11 d~swI~----p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~~~gI~~VV~L~~------------------- 67 (515)
|.|||. .++||++|+|+ .+|..+||+|||++++. .||.|+.
T Consensus 31 ~A~~v~~~~~~~~~I~~q~P~---~~t~~~FW~mv~~~~~~-------------~Iv~L~~~~e~~~~~~~~y~P~~~~~ 94 (235)
T PF00102_consen 31 NASYVDGYKNGKKFIVTQAPM---PDTIEDFWQMVWEQKVQ-------------IIVMLCSFDESGDEKCDQYWPLKEGE 94 (235)
T ss_dssp SEEEEEESSSTEEEEEEES-S---GGGHHHHHHHHHHTTBS-------------EEEEESBSEETTEESS--TSTSSSSS
T ss_pred hhhhhccccchhhheeecccc---cccccceehheeecccc-------------ceeccccccccccccccccccccccc
Confidence 568883 57899999998 56999999999987544 3333321
Q ss_pred -------------------CCCCcchhh---------ccCceEEEc-cCCCCCCCCh-HHHHHHHHHHHhc----CCCeE
Q psy3114 68 -------------------KNYDERKFT---------EAGLDHVDF-YFPDGTAPPN-DILCEFIKVCEKY----KGPIA 113 (515)
Q Consensus 68 -------------------~~y~~~~~~---------~~gi~~~~~-p~~D~~~P~~-~~i~~fi~~~~~~----~~pVl 113 (515)
..+....+. .+.+.++++ .|+|.++|.. ..+++|++.+... ++||+
T Consensus 95 ~~~~g~~~V~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~v~~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~piv 174 (235)
T PF00102_consen 95 SLKFGDYTVKCKEKIEENSKHYTVRKLEVTNGKSKKKSRTVTHFHYTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIV 174 (235)
T ss_dssp EEEETTEEEEEEEEEEEEESSEEEEEEEEEETTTTEEEEEEEEEEEESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEE
T ss_pred ccccccccccccccccccccceEEeeccccccccccccccccceeeeeccccccccccchhhhhhhhccccccCCccceE
Confidence 111111110 134678888 5999999954 6788888887764 49999
Q ss_pred EEcCCCCChhhHHHHHHHHH-----hcCCCHHHHHHHHHHhCCCCCCChHH-HHHHHHH
Q psy3114 114 VHCKAGLGRTGCLIGAYMIK-----HYKMSAMETIAWMRICRPGCVIGVQQ-DWLKDVQ 166 (515)
Q Consensus 114 VHC~aGvgRSgt~iaayLm~-----~~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~ 166 (515)
|||.+|+||||+||++.++. ...+++.+++..+|++|+++|++.+| .|++.+.
T Consensus 175 Vhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~~~ 233 (235)
T PF00102_consen 175 VHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCYMAV 233 (235)
T ss_dssp EESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHHHHH
T ss_pred eecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHHHHH
Confidence 99999999999999998652 34689999999999999999999999 8887763
No 25
>KOG1719|consensus
Probab=99.60 E-value=5.9e-15 Score=130.93 Aligned_cols=115 Identities=25% Similarity=0.369 Sum_probs=94.8
Q ss_pred HHhhcCCCceEEEEecCCCCC---cchhhccCceEEEccCCC-CCCCChHH---HHHHHHHHHhcCCCeEEEcCCCCChh
Q psy3114 51 HHLKCPNGVQLVVRLNQKNYD---ERKFTEAGLDHVDFYFPD-GTAPPNDI---LCEFIKVCEKYKGPIAVHCKAGLGRT 123 (515)
Q Consensus 51 ~~L~~~~gI~~VV~L~~~~y~---~~~~~~~gi~~~~~p~~D-~~~P~~~~---i~~fi~~~~~~~~pVlVHC~aGvgRS 123 (515)
..++ +.|+..||+++++.-. .......||.++.+|..| .+.|+.+. ..+||......|..|+|||.||.|||
T Consensus 45 ~~i~-ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRS 123 (183)
T KOG1719|consen 45 PLIK-KENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRS 123 (183)
T ss_pred hHHH-hcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccc
Confidence 3445 6899999999865321 335667899999999888 45788755 36788877778999999999999999
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCChHH-HHHHHHH
Q psy3114 124 GCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQ-DWLKDVQ 166 (515)
Q Consensus 124 gt~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~ 166 (515)
+|+++||||...+|++++|++++|+.||.....+.| .-+.++.
T Consensus 124 aTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~ 167 (183)
T KOG1719|consen 124 ATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFY 167 (183)
T ss_pred hhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHH
Confidence 999999999999999999999999999999888888 5555553
No 26
>KOG1716|consensus
Probab=99.58 E-value=1.9e-14 Score=145.36 Aligned_cols=140 Identities=23% Similarity=0.356 Sum_probs=108.4
Q ss_pred CCceEEeCCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhcCCCceEEEEecCCCCCcchhhccCceEEEccCCC
Q psy3114 10 GDISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPD 89 (515)
Q Consensus 10 gd~swI~p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~~~gI~~VV~L~~~~y~~~~~~~~gi~~~~~p~~D 89 (515)
.+++-|.|+.|++.+.=. .....++ ++||++|+|+.............++.|++++..|
T Consensus 73 ~~~~~i~p~l~lg~~~~~--------------------~~~~~l~-~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D 131 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVA--------------------SDPDLLK-KLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVED 131 (285)
T ss_pred CCceeecCCceecCcccc--------------------cchhhHH-HcCCCEEEEecccCCccccccccCceEEeccccC
Confidence 356667777776666511 1233444 7899999999865333221222388999999888
Q ss_pred CCCCCh----HHHHHHHHHHHhcCCCeEEEcCCCCChhhHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCChHHHHHHHH
Q psy3114 90 GTAPPN----DILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165 (515)
Q Consensus 90 ~~~P~~----~~i~~fi~~~~~~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~q~Fl~~l 165 (515)
....+. +...+||+.+...++.|+|||.+|++||+++++||||+..++++.+|+++|+.+|+ +..||-+|+.||
T Consensus 132 ~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~--~i~PN~gf~~QL 209 (285)
T KOG1716|consen 132 NPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRP--IISPNFGFLRQL 209 (285)
T ss_pred CccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCC--ccCCCHHHHHHH
Confidence 754443 44789999999999999999999999999999999999999999999999999999 444799999999
Q ss_pred HHHHHHc
Q psy3114 166 QHVLQNV 172 (515)
Q Consensus 166 ~~~l~~~ 172 (515)
..+....
T Consensus 210 ~~~e~~l 216 (285)
T KOG1716|consen 210 LEFEKRL 216 (285)
T ss_pred HHHHHhh
Confidence 8776653
No 27
>KOG1717|consensus
Probab=99.57 E-value=1.1e-14 Score=139.65 Aligned_cols=120 Identities=15% Similarity=0.274 Sum_probs=98.0
Q ss_pred HHHhhcCCCceEEEEecCCCCCcchhhc-cCceEEEccCCCCCCCCh----HHHHHHHHHHHhcCCCeEEEcCCCCChhh
Q psy3114 50 IHHLKCPNGVQLVVRLNQKNYDERKFTE-AGLDHVDFYFPDGTAPPN----DILCEFIKVCEKYKGPIAVHCKAGLGRTG 124 (515)
Q Consensus 50 i~~L~~~~gI~~VV~L~~~~y~~~~~~~-~gi~~~~~p~~D~~~P~~----~~i~~fi~~~~~~~~pVlVHC~aGvgRSg 124 (515)
++-|+ ++||++|||++... +..|+. ..+.|.+||+.|+..... ...+.||+.++.++..|||||.+||+||.
T Consensus 190 ldvLk-k~gI~yviNVTpnl--pn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSv 266 (343)
T KOG1717|consen 190 LDVLK-KYGIKYVINVTPNL--PNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSV 266 (343)
T ss_pred HHHHH-hcCceEEEecCCCC--cchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchh
Confidence 34566 79999999998643 223433 447799999999866554 34579999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCc
Q psy3114 125 CLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQHVLQNVGD 174 (515)
Q Consensus 125 t~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~q~Fl~~l~~~l~~~~~ 174 (515)
|++++|||....+++.+|+.+|+.++.++ +||-+|+.||..+....+.
T Consensus 267 TvtvaYLMqkl~lslndAyd~Vk~kksni--sPNFnFMgQLldfertlgl 314 (343)
T KOG1717|consen 267 TVTVAYLMQKLNLSLNDAYDFVKHKKSNI--SPNFNFMGQLLDFERTLGL 314 (343)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHhccCC--CCCcchhHHHHHHHHHhhc
Confidence 99999999999999999999999999855 4888999999766555443
No 28
>PRK12361 hypothetical protein; Provisional
Probab=99.56 E-value=3.3e-14 Score=156.27 Aligned_cols=137 Identities=19% Similarity=0.300 Sum_probs=103.9
Q ss_pred CceEEeCCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhcCCCceEEEEecCCCCCc-chhhccCceEEEccCCC
Q psy3114 11 DISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDE-RKFTEAGLDHVDFYFPD 89 (515)
Q Consensus 11 d~swI~p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~~~gI~~VV~L~~~~y~~-~~~~~~gi~~~~~p~~D 89 (515)
.++.|.|+.|++.. |... ++..|+ +.||++|||++.+.... ......++.|+++|+.|
T Consensus 94 ~~~~I~~~l~lG~~-~~a~-------------------d~~~L~-~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D 152 (547)
T PRK12361 94 AIQKIDENLYLGCR-LFPA-------------------DLEKLK-SNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILD 152 (547)
T ss_pred cceEEcCcEEECCC-CCcc-------------------cHHHHH-HcCCCEEEEcccccccccccccccCceEEEeecCC
Confidence 35778898887754 3311 244566 68999999998543221 12234679999999999
Q ss_pred CCCCChHH---HHHHHHHHHhcCCCeEEEcCCCCChhhHHHHHHHHHh-cCCCHHHHHHHHHHhCCCCCCChHHHHHHHH
Q psy3114 90 GTAPPNDI---LCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH-YKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165 (515)
Q Consensus 90 ~~~P~~~~---i~~fi~~~~~~~~pVlVHC~aGvgRSgt~iaayLm~~-~~~s~~~Ai~~vR~~Rp~~v~~~~q~Fl~~l 165 (515)
...|..+. ..+||+...+.+++|+|||.+|+|||+++++||||.. .++++++|++.||++||.+..++.| +..+
T Consensus 153 ~~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q--~~~l 230 (547)
T PRK12361 153 HSVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQ--LRAL 230 (547)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHH--HHHH
Confidence 88887643 5778887778899999999999999999999999975 5899999999999999988866554 4444
Q ss_pred HHHHH
Q psy3114 166 QHVLQ 170 (515)
Q Consensus 166 ~~~l~ 170 (515)
..+..
T Consensus 231 ~~~~~ 235 (547)
T PRK12361 231 EKMLE 235 (547)
T ss_pred HHHHH
Confidence 44433
No 29
>KOG0789|consensus
Probab=99.56 E-value=1e-14 Score=154.79 Aligned_cols=90 Identities=26% Similarity=0.380 Sum_probs=69.7
Q ss_pred CceEEEcc-CCCCCCCCh-HHHHHHHHH----HHhcCCCeEEEcCCCCChhhHHHHHHHHH-h--c---CCCHHHHHHHH
Q psy3114 79 GLDHVDFY-FPDGTAPPN-DILCEFIKV----CEKYKGPIAVHCKAGLGRTGCLIGAYMIK-H--Y---KMSAMETIAWM 146 (515)
Q Consensus 79 gi~~~~~p-~~D~~~P~~-~~i~~fi~~----~~~~~~pVlVHC~aGvgRSgt~iaayLm~-~--~---~~s~~~Ai~~v 146 (515)
-+.|+++. |||+++|.. ..++.++.. .....+|++|||++|+||||+|+++..+. . . ..++.+.+..+
T Consensus 263 ~v~~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~i 342 (415)
T KOG0789|consen 263 SVVHYHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREI 342 (415)
T ss_pred eEEEEeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 45777774 999999985 556667642 22346899999999999999999886321 1 2 35589999999
Q ss_pred HHhCCCCCCChHH-HHHHHHHHH
Q psy3114 147 RICRPGCVIGVQQ-DWLKDVQHV 168 (515)
Q Consensus 147 R~~Rp~~v~~~~q-~Fl~~l~~~ 168 (515)
|.+|.++|++..| .|++.....
T Consensus 343 R~qR~~~vqt~~Qy~f~~~~~~~ 365 (415)
T KOG0789|consen 343 RYQRPGAVQSPLQYLFIYAATLK 365 (415)
T ss_pred HHHhhhcccchhHHHHHHHHHHH
Confidence 9999999999999 788888433
No 30
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.55 E-value=2.9e-14 Score=121.00 Aligned_cols=86 Identities=31% Similarity=0.616 Sum_probs=72.6
Q ss_pred ceEEEc-cCCCCCCCCh-HHHHHHHHHHHhc------CCCeEEEcCCCCChhhHHHHHHHHHh------cCCCHHHHHHH
Q psy3114 80 LDHVDF-YFPDGTAPPN-DILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIGAYMIKH------YKMSAMETIAW 145 (515)
Q Consensus 80 i~~~~~-p~~D~~~P~~-~~i~~fi~~~~~~------~~pVlVHC~aGvgRSgt~iaayLm~~------~~~s~~~Ai~~ 145 (515)
+.++++ .|+|.++|.. +.+.+|++.+... ++||+|||.+|+||||++|+++++.. ...++.+++..
T Consensus 2 ~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (105)
T smart00404 2 VKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKE 81 (105)
T ss_pred eEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 345666 6999999987 6788888877653 68999999999999999999998743 24789999999
Q ss_pred HHHhCCCCCCChHH-HHHHHH
Q psy3114 146 MRICRPGCVIGVQQ-DWLKDV 165 (515)
Q Consensus 146 vR~~Rp~~v~~~~q-~Fl~~l 165 (515)
+|.+|++++++..| .|++..
T Consensus 82 ir~~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00404 82 LRKQRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred HHhhhhhhCCcHHHHHHHHHH
Confidence 99999999999998 777665
No 31
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.55 E-value=2.9e-14 Score=121.00 Aligned_cols=86 Identities=31% Similarity=0.616 Sum_probs=72.6
Q ss_pred ceEEEc-cCCCCCCCCh-HHHHHHHHHHHhc------CCCeEEEcCCCCChhhHHHHHHHHHh------cCCCHHHHHHH
Q psy3114 80 LDHVDF-YFPDGTAPPN-DILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIGAYMIKH------YKMSAMETIAW 145 (515)
Q Consensus 80 i~~~~~-p~~D~~~P~~-~~i~~fi~~~~~~------~~pVlVHC~aGvgRSgt~iaayLm~~------~~~s~~~Ai~~ 145 (515)
+.++++ .|+|.++|.. +.+.+|++.+... ++||+|||.+|+||||++|+++++.. ...++.+++..
T Consensus 2 ~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (105)
T smart00012 2 VKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKE 81 (105)
T ss_pred eEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 345666 6999999987 6788888877653 68999999999999999999998743 24789999999
Q ss_pred HHHhCCCCCCChHH-HHHHHH
Q psy3114 146 MRICRPGCVIGVQQ-DWLKDV 165 (515)
Q Consensus 146 vR~~Rp~~v~~~~q-~Fl~~l 165 (515)
+|.+|++++++..| .|++..
T Consensus 82 ir~~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00012 82 LRKQRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred HHhhhhhhCCcHHHHHHHHHH
Confidence 99999999999998 777665
No 32
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.55 E-value=5.8e-14 Score=132.47 Aligned_cols=97 Identities=29% Similarity=0.431 Sum_probs=80.5
Q ss_pred CCcchhhccCceEEEccCCCCCCCChHH---HHHHHHHHHhcCCCeEEEcCCCCChhhHHHHHHHHHh-cCCCHHHHHHH
Q psy3114 70 YDERKFTEAGLDHVDFYFPDGTAPPNDI---LCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKH-YKMSAMETIAW 145 (515)
Q Consensus 70 y~~~~~~~~gi~~~~~p~~D~~~P~~~~---i~~fi~~~~~~~~pVlVHC~aGvgRSgt~iaayLm~~-~~~s~~~Ai~~ 145 (515)
+........++.++++|++|+.+|+... +.+||+...+.++.|+|||.+|+|||||++|+|||.. +++..++++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~ 142 (180)
T COG2453 63 YNVAIEENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAV 142 (180)
T ss_pred eecceeccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3344556688999999999999998743 6777777777888999999999999999999999987 67789999999
Q ss_pred HHHhCCCCCCChHH-HHHHHHH
Q psy3114 146 MRICRPGCVIGVQQ-DWLKDVQ 166 (515)
Q Consensus 146 vR~~Rp~~v~~~~q-~Fl~~l~ 166 (515)
+|..|++.+.+..| .|..+..
T Consensus 143 ~~~~r~~~v~~~~q~~~~~e~~ 164 (180)
T COG2453 143 KRRRRPGAVVTEIQHLFELEQE 164 (180)
T ss_pred HHhcCCcccccHHHHHHHHHHH
Confidence 99999987777777 5554443
No 33
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.53 E-value=5.4e-14 Score=128.25 Aligned_cols=123 Identities=24% Similarity=0.398 Sum_probs=73.3
Q ss_pred CceEEeCC------cEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhcCCCceEEEEecCC----CCC----cchhh
Q psy3114 11 DISWIVPN------KLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQK----NYD----ERKFT 76 (515)
Q Consensus 11 d~swI~p~------~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~~~gI~~VV~L~~~----~y~----~~~~~ 76 (515)
.++|+.+. .+.-+..|..+ .. .|.++++.++..|+ ..|+..||++++. .|. ....+
T Consensus 28 ~i~~l~~s~~~~~~~Lglt~~PG~k----~~-----d~~RdL~~DL~~Lk-~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~ 97 (168)
T PF05706_consen 28 QIDWLPLSPVNCSGFLGLTFLPGCK----FK-----DWRRDLQADLERLK-DWGAQDVVTLLTDHELARLGVPDLGEAAQ 97 (168)
T ss_dssp --EEEE-GGGT-SSEEEEES-TT-E----ET-----TEEB-HHHHHHHHH-HTT--EEEE-S-HHHHHHTT-TTHHHHHH
T ss_pred eeeeecccccCCcceeeeecCCCcc----cc-----cccchHHHHHHHHH-HCCCCEEEEeCcHHHHHHcCCccHHHHHH
Confidence 46898753 34444556532 11 24578899999999 7999999999852 122 23455
Q ss_pred ccCceEEEccCCCCCCCChHHHHHHHHH---HHhcCCCeEEEcCCCCChhhHHHHHHHHHh-cCCCHHHHH
Q psy3114 77 EAGLDHVDFYFPDGTAPPNDILCEFIKV---CEKYKGPIAVHCKAGLGRTGCLIGAYMIKH-YKMSAMETI 143 (515)
Q Consensus 77 ~~gi~~~~~p~~D~~~P~~~~i~~fi~~---~~~~~~pVlVHC~aGvgRSgt~iaayLm~~-~~~s~~~Ai 143 (515)
.+|+.++|+|++|.++|+.+.+..++.. ...+++.|+|||.+|+||||+++||+|+.- .+++.++||
T Consensus 98 ~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 98 ARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 7999999999999999987654444443 345789999999999999999999998863 368888886
No 34
>KOG2283|consensus
Probab=99.47 E-value=1.9e-13 Score=143.83 Aligned_cols=149 Identities=29% Similarity=0.443 Sum_probs=120.4
Q ss_pred CCceEEeCCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhcCC-CceEEEEec-CCCCCcchhhccCceEEEccC
Q psy3114 10 GDISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPN-GVQLVVRLN-QKNYDERKFTEAGLDHVDFYF 87 (515)
Q Consensus 10 gd~swI~p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~~~-gI~~VV~L~-~~~y~~~~~~~~gi~~~~~p~ 87 (515)
.|++||+.+ +|||..|..... -.+.+++.+++..|..++ |-..|.||+ +..|+...|..+ +..|+|
T Consensus 13 LDltYIT~r-IIamsfPa~~~e--------s~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~---V~~~~~ 80 (434)
T KOG2283|consen 13 LDLTYITSR-IIAMSFPAEGIE--------SLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGR---VARFGF 80 (434)
T ss_pred ccceeeeee-EEEEeCCCCcch--------hhhcCCHHHHHHHHhhccCCceEEEecCccccCCccccccc---eeecCC
Confidence 578999965 999999996643 267778887777776555 446799999 788888777664 566999
Q ss_pred CCCCCCChHHHHHHHHHHHh-----cCCCeEEEcCCCCChhhHHHHHHHHHhcCCC-HHHHHHHHHHhC---C--CCCCC
Q psy3114 88 PDGTAPPNDILCEFIKVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS-AMETIAWMRICR---P--GCVIG 156 (515)
Q Consensus 88 ~D~~~P~~~~i~~fi~~~~~-----~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s-~~~Ai~~vR~~R---p--~~v~~ 156 (515)
+|+.+|..+.+..|++.+.. ....|+|||.+|.||||++|+|||+..+... +++|+.++-.+| . ..+..
T Consensus 81 ~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~ 160 (434)
T KOG2283|consen 81 DDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTI 160 (434)
T ss_pred CCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccC
Confidence 99999999999999988775 3678999999999999999999999866554 999999999999 3 24555
Q ss_pred hHH-HHHHHHHHHHH
Q psy3114 157 VQQ-DWLKDVQHVLQ 170 (515)
Q Consensus 157 ~~q-~Fl~~l~~~l~ 170 (515)
|.| +|++++..++-
T Consensus 161 PSq~RYv~Y~~~~l~ 175 (434)
T KOG2283|consen 161 PSQRRYVGYFSRVLL 175 (434)
T ss_pred chhhHHHHHHHHHhh
Confidence 666 99999976433
No 35
>KOG4228|consensus
Probab=99.46 E-value=8.9e-14 Score=155.72 Aligned_cols=147 Identities=29% Similarity=0.488 Sum_probs=97.8
Q ss_pred eCCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhh-------cCC-----C-c---eEEEEec----CCCCCcchh
Q psy3114 16 VPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLK-------CPN-----G-V---QLVVRLN----QKNYDERKF 75 (515)
Q Consensus 16 ~p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~-------~~~-----g-I---~~VV~L~----~~~y~~~~~ 75 (515)
-|..|||+|+|+ .+|+.|||+|+|+.++. .|+||. |.. | + ...|... ...+..+.|
T Consensus 893 ~~~~fivtq~PL---~~T~~DFWrmi~d~~~t-siVmL~~l~~~~~C~qyw~~~g~~~yg~i~Ve~~~~~~~~~~t~r~f 968 (1087)
T KOG4228|consen 893 QPKAFIVTQGPL---AETVEDFWRMIWDQNVT-SIVMLTELKHPEKCPQYWPPEGSQRYGPIEVEDMNEHINPQYTAREF 968 (1087)
T ss_pred CcceEEEecCCc---ccchHHHHHHhhcccee-EEEEecccCcccccccccCCcCceecCcEEEEecccccchhhhhhhh
Confidence 477899999999 67999999999977544 122221 000 0 0 0111111 111222222
Q ss_pred hc--------cCceEEEc-cCCCCCCCCh-HHHHHHH-HHHHh-----cCCCeEEEcCCCCChhhHHHHHHHH-----Hh
Q psy3114 76 TE--------AGLDHVDF-YFPDGTAPPN-DILCEFI-KVCEK-----YKGPIAVHCKAGLGRTGCLIGAYMI-----KH 134 (515)
Q Consensus 76 ~~--------~gi~~~~~-p~~D~~~P~~-~~i~~fi-~~~~~-----~~~pVlVHC~aGvgRSgt~iaayLm-----~~ 134 (515)
.. ..+..+++ .||..+.|.. ...+.++ ..+.. ..+|+.|||.+|+||||+|||+-++ .+
T Consensus 969 ~i~n~~~~~~r~v~qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e 1048 (1087)
T KOG4228|consen 969 GVTNEREKQSRTVRQFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKE 1048 (1087)
T ss_pred eeeeccccCceEEEEEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhc
Confidence 21 23456666 4998776655 3333333 33222 2799999999999999999999654 24
Q ss_pred cCCCHHHHHHHHHHhCCCCCCChHH-HHHHHHH
Q psy3114 135 YKMSAMETIAWMRICRPGCVIGVQQ-DWLKDVQ 166 (515)
Q Consensus 135 ~~~s~~~Ai~~vR~~Rp~~v~~~~q-~Fl~~l~ 166 (515)
+.+|++.+++.+|.+|++||++.+| .|+++..
T Consensus 1049 ~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYdv~ 1081 (1087)
T KOG4228|consen 1049 GVVDVFQTVKTLRFQRPGMVDTSDQYQFCYDVA 1081 (1087)
T ss_pred CceeeehhhhhhhhcCccccCcHHHHHHHHHHH
Confidence 5799999999999999999999999 9999874
No 36
>KOG3209|consensus
Probab=99.37 E-value=1e-12 Score=139.81 Aligned_cols=123 Identities=36% Similarity=0.601 Sum_probs=97.2
Q ss_pred CCCCCCCCCcEEEEcCCCceEEEeCCCCeeeccCCCcc-----------CCCCCCceEeecCCCceEEeeCCCCcccccC
Q psy3114 320 SDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEK-----------EGLPTGWERIENPEYGVYFVNHITRQAQYEH 388 (515)
Q Consensus 320 ~~~~~LP~gWe~~~~~~G~~yy~~~~t~tt~w~~P~~~-----------~~LP~gWe~~~~~~g~~yy~nh~t~~t~w~~ 388 (515)
...++||..|+..++..|.+||+||+|++|+|.+|+.. ..||.||+...|+.+++||++|+|+.|+++.
T Consensus 218 ~~~gplp~nwemayte~gevyfiDhntkttswLdprl~kkaK~~eeckd~elPygWeki~dpiYg~yyvdHiN~~sq~en 297 (984)
T KOG3209|consen 218 DNLGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAKPPEECKDQELPYGWEKIEDPIYGTYYVDHINRKSQYEN 297 (984)
T ss_pred cccCCCCccceEeEeecCeeEeeecccccceecChhhhcccCChhhcccccccccccccCCccceeEEecccchhhhhcc
Confidence 44577999999999999999999999999999999832 6799999999999999999999999999999
Q ss_pred CCCCCC-------CCCcc---cccccCCCCC-----CC-------------CcccCCCCcccCCCCCCCC--CCCCceEe
Q psy3114 389 PCAPHY-------IYQPE---VRIALAPPPP-----PR-------------HTQYQPHSVIVPANPYLNQ--EIPMWLSV 438 (515)
Q Consensus 389 P~~~~~-------~~~~~---~~~~~~~~p~-----p~-------------~~~~~~~~~~~~~n~~~~~--~~p~wl~~ 438 (515)
|.+... .++.+ .|. .+.|. |+ +|.+-++.++|+|...++- +..|||||
T Consensus 298 pvleakrk~Q~~~~~~~E~g~~p~--~~~p~~~q~Kp~fTrdPSqlkG~~ist~LvKg~~GFGfTliGGdd~~gDefLqV 375 (984)
T KOG3209|consen 298 PVLEAKRKKQLRGFDQTETGTAPP--QDHPSLIQGKPLFTRDPSQLKGELISTKLVKGYMGFGFTLIGGDDVRGDEFLQV 375 (984)
T ss_pred chhhcccchhhcCccceeccCCCC--CcCchhhccCCcccCChHHhCCeEEEEEEeecccccceEEecCCcCCCCceeee
Confidence 998641 00100 100 01121 21 4445566789999999877 99999999
Q ss_pred eccCCc
Q psy3114 439 YSRASQ 444 (515)
Q Consensus 439 y~~~~~ 444 (515)
-++-..
T Consensus 376 Ksvl~D 381 (984)
T KOG3209|consen 376 KSVLKD 381 (984)
T ss_pred eecccC
Confidence 998765
No 37
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.28 E-value=2.2e-11 Score=113.05 Aligned_cols=115 Identities=15% Similarity=0.256 Sum_probs=70.6
Q ss_pred HHHhhcCCCceEEEEecCCCCCc---chhhccCceEEEccCCCCCC----CChHHHHHHHHHH-HhcCCCeEEEcCCCCC
Q psy3114 50 IHHLKCPNGVQLVVRLNQKNYDE---RKFTEAGLDHVDFYFPDGTA----PPNDILCEFIKVC-EKYKGPIAVHCKAGLG 121 (515)
Q Consensus 50 i~~L~~~~gI~~VV~L~~~~y~~---~~~~~~gi~~~~~p~~D~~~----P~~~~i~~fi~~~-~~~~~pVlVHC~aGvg 121 (515)
+..|+ .+|+++||+|..+.... ..++..||++++++...... ...+.+.+.++.+ ...+.||||||..|..
T Consensus 25 ~~fL~-~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~ 103 (164)
T PF03162_consen 25 FPFLE-RLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKD 103 (164)
T ss_dssp HHHHH-HHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSS
T ss_pred HHHHH-HCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCc
Confidence 44566 58999999999765442 23567999999998765433 3345666777654 4568999999999999
Q ss_pred hhhHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q psy3114 122 RTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQ 166 (515)
Q Consensus 122 RSgt~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~q~Fl~~l~ 166 (515)
|||++|||+. +.+||++.+|++++|.--.......+..|++.+.
T Consensus 104 rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~~~~~~~~~~fIe~f~ 147 (164)
T PF03162_consen 104 RTGLVVGCLR-KLQGWSLSSIFDEYRRFAGPKIRYLDEQFIELFD 147 (164)
T ss_dssp HHHHHHHHHH-HHTTB-HHHHHHHHHHHHGGG--HHHHHHHHT--
T ss_pred chhhHHHHHH-HHcCCCHHHHHHHHHHhcCCCCcHHHHHHHHhcC
Confidence 9999999998 5689999999999987554433334557777663
No 38
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.02 E-value=3.1e-09 Score=95.63 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=76.6
Q ss_pred HHHHhhcCCCceEEEEecCCCC---Ccc------hhhccCceEEEccCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCCC
Q psy3114 49 KIHHLKCPNGVQLVVRLNQKNY---DER------KFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAG 119 (515)
Q Consensus 49 ~i~~L~~~~gI~~VV~L~~~~y---~~~------~~~~~gi~~~~~p~~D~~~P~~~~i~~fi~~~~~~~~pVlVHC~aG 119 (515)
++..|+ ++||++|||+....- .+. .....|+.|+++|+.... ++.+.+..|.+.+....+|||+||.+|
T Consensus 19 d~~~L~-~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~-~~~~~v~~f~~~~~~~~~pvL~HC~sG 96 (135)
T TIGR01244 19 DAAQAA-QLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD-ITPDDVETFRAAIGAAEGPVLAYCRSG 96 (135)
T ss_pred HHHHHH-HCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC-CCHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 566777 689999999974311 111 123479999999976544 455667788888877789999999999
Q ss_pred CChhhHHHHHHHHHhcCCCHHHHHHHHHHhCCC
Q psy3114 120 LGRTGCLIGAYMIKHYKMSAMETIAWMRICRPG 152 (515)
Q Consensus 120 vgRSgt~iaayLm~~~~~s~~~Ai~~vR~~Rp~ 152 (515)
. |||++.++++.. .|++.+++++..+..-..
T Consensus 97 ~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~ 127 (135)
T TIGR01244 97 T-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYD 127 (135)
T ss_pred h-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCC
Confidence 9 999888877665 789999999999876643
No 39
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.87 E-value=1.7e-09 Score=71.82 Aligned_cols=30 Identities=43% Similarity=0.882 Sum_probs=26.4
Q ss_pred CCCCceEeecCC-CceEEeeCCCCcccccCC
Q psy3114 360 LPTGWERIENPE-YGVYFVNHITRQAQYEHP 389 (515)
Q Consensus 360 LP~gWe~~~~~~-g~~yy~nh~t~~t~w~~P 389 (515)
||.||++++|.+ |++||+|+.|++|||++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 788999988865 899999999999999987
No 40
>KOG2386|consensus
Probab=98.80 E-value=1.7e-08 Score=104.21 Aligned_cols=146 Identities=25% Similarity=0.415 Sum_probs=110.1
Q ss_pred CCcEEeeCCCCCCCCCCcCCCCcchhhhhhHHHHHHhhc-CCCceEEEEecC--CCCCcchhhccCceEEEccCCCCC-C
Q psy3114 17 PNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKC-PNGVQLVVRLNQ--KNYDERKFTEAGLDHVDFYFPDGT-A 92 (515)
Q Consensus 17 p~~fIatq~Pl~~~~~t~~dfw~mvw~~~l~~~i~~L~~-~~gI~~VV~L~~--~~y~~~~~~~~gi~~~~~p~~D~~-~ 92 (515)
-.+||++..|+++..++.-..-...+. ....+..|+. ...|..+|+|.. ..|+......+|+.|+.+....++ +
T Consensus 23 ~~rfi~~K~pL~~~~~~k~~~~~~~f~--~~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~v 100 (393)
T KOG2386|consen 23 DTRFIPFKTPLNSSYSTKTFPGSQRFQ--PKDLFELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVV 100 (393)
T ss_pred cceEEEEecccCCCCCcCCCCCccccC--HHHHHHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcccC
Confidence 468999999998765443222221221 1223334441 235678889864 567777788899999999888776 7
Q ss_pred CChHHHHHHHHHHHh-------cCCCeEEEcCCCCChhhHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCChHHHHHHHH
Q psy3114 93 PPNDILCEFIKVCEK-------YKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165 (515)
Q Consensus 93 P~~~~i~~fi~~~~~-------~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~q~Fl~~l 165 (515)
|....+..|++.+.. .+.-|+|||.+|++|||-+|++||+...+++..+|++.+-..|+..+ .-+.|+..|
T Consensus 101 p~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi--~k~dyi~~L 178 (393)
T KOG2386|consen 101 PRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGI--EKQDYIDAL 178 (393)
T ss_pred CCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCcc--CchHHHHHH
Confidence 877777788777654 36789999999999999999999999999999999999999999888 455777777
Q ss_pred H
Q psy3114 166 Q 166 (515)
Q Consensus 166 ~ 166 (515)
.
T Consensus 179 ~ 179 (393)
T KOG2386|consen 179 Y 179 (393)
T ss_pred h
Confidence 4
No 41
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.76 E-value=7e-08 Score=83.49 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=52.3
Q ss_pred HHHHHhhcCCCceEEEEecCCCCC---------cchhhccCceEEEccCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCC
Q psy3114 48 RKIHHLKCPNGVQLVVRLNQKNYD---------ERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKA 118 (515)
Q Consensus 48 ~~i~~L~~~~gI~~VV~L~~~~y~---------~~~~~~~gi~~~~~p~~D~~~P~~~~i~~fi~~~~~~~~pVlVHC~a 118 (515)
+++..|+ +.|+++|||+....-. ....+..|+.|+++|+... .++.+.+..|.+.+....+||++||..
T Consensus 18 ~d~~~la-~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~-~~~~~~v~~f~~~l~~~~~Pvl~hC~s 95 (110)
T PF04273_consen 18 EDLAQLA-AQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG-AITEEDVEAFADALESLPKPVLAHCRS 95 (110)
T ss_dssp HHHHHHH-HCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT-T--HHHHHHHHHHHHTTTTSEEEE-SC
T ss_pred HHHHHHH-HCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC-CCCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3677888 6999999999743111 1234579999999998754 366788899999999889999999999
Q ss_pred CCChhhHHHHHH
Q psy3114 119 GLGRTGCLIGAY 130 (515)
Q Consensus 119 GvgRSgt~iaay 130 (515)
|. |++++.++.
T Consensus 96 G~-Ra~~l~~l~ 106 (110)
T PF04273_consen 96 GT-RASALWALA 106 (110)
T ss_dssp SH-HHHHHHHHH
T ss_pred Ch-hHHHHHHHH
Confidence 95 998776653
No 42
>PLN02727 NAD kinase
Probab=98.75 E-value=3.5e-08 Score=110.45 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=72.1
Q ss_pred HHHHHhhcCCCceEEEEecCCCCC--------cchhhccCceEEEccCCCCCCCChHHHHHHHHHH-HhcCCCeEEEcCC
Q psy3114 48 RKIHHLKCPNGVQLVVRLNQKNYD--------ERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVC-EKYKGPIAVHCKA 118 (515)
Q Consensus 48 ~~i~~L~~~~gI~~VV~L~~~~y~--------~~~~~~~gi~~~~~p~~D~~~P~~~~i~~fi~~~-~~~~~pVlVHC~a 118 (515)
+.+..|. +.|+++||||...... ....+..|+.|+++|+.+...|+.+.+.+|.+.+ .....|||+||..
T Consensus 272 e~la~LA-~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpkPVLvHCKS 350 (986)
T PLN02727 272 EGLKWLL-EKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKE 350 (986)
T ss_pred HHHHHHH-HCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCCEEEECCC
Confidence 3566677 5899999999754321 1123358999999999998889999999999999 5578999999999
Q ss_pred CCChhhHHHHHHHHHhcCC
Q psy3114 119 GLGRTGCLIGAYMIKHYKM 137 (515)
Q Consensus 119 GvgRSgt~iaayLm~~~~~ 137 (515)
|.+|||+++|||+....+.
T Consensus 351 GarRAGamvA~yl~~~~~~ 369 (986)
T PLN02727 351 GVWRTSAMVSRWKQYMTRS 369 (986)
T ss_pred CCchHHHHHHHHHHHHccc
Confidence 9999999999999864443
No 43
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.70 E-value=1.6e-08 Score=67.54 Aligned_cols=31 Identities=42% Similarity=0.901 Sum_probs=28.5
Q ss_pred CCCCceEeecCCCceEEeeCCCCcccccCCC
Q psy3114 360 LPTGWERIENPEYGVYFVNHITRQAQYEHPC 390 (515)
Q Consensus 360 LP~gWe~~~~~~g~~yy~nh~t~~t~w~~P~ 390 (515)
||.||+...|.+|++||+|+.|++++|++|+
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 6899999999889999999999999999996
No 44
>KOG3209|consensus
Probab=98.65 E-value=2.2e-08 Score=107.41 Aligned_cols=145 Identities=22% Similarity=0.348 Sum_probs=90.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCceEEEeCCCC---eeeccC-----CC----
Q psy3114 288 HDIPDNMPYHFTPYPPQIPSISCHPSQQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTK---TTHWSH-----PL---- 355 (515)
Q Consensus 288 ~~lP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~yy~~~~t~---tt~w~~-----P~---- 355 (515)
..+|++|...++-++..|+..+.... .....+..+++||+.. +|..||+.+..+ +++|.. |.
T Consensus 131 ~~~~~~~~es~~kr~~sy~~m~n~g~---~~~eeeee~d~g~~n~---~~~~~~~E~~e~s~~~s~~m~ssy~aPsts~s 204 (984)
T KOG3209|consen 131 LLLPPNSAESYRKRTKSYSIMENAGI---TTPEEEEEEDPGWENG---SGQNYSVEMEESSYPTSSDMPSSYFAPSTSQS 204 (984)
T ss_pred ccCCCcchhcccccCcceeehhccCC---CCcccccccCcccccc---CCcccchhhhhccCCccCCCcccccccccCCC
Confidence 45688998888888777776553322 2234556788888764 555555543332 233321 11
Q ss_pred --------------ccCCCCCCceEeecCCCceEEeeCCCCcccccCCCCCCCCCCcccccccCCCCCCCCcccCCCCcc
Q psy3114 356 --------------EKEGLPTGWERIENPEYGVYFVNHITRQAQYEHPCAPHYIYQPEVRIALAPPPPPRHTQYQPHSVI 421 (515)
Q Consensus 356 --------------~~~~LP~gWe~~~~~~g~~yy~nh~t~~t~w~~P~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~ 421 (515)
..++||..||.+++.+|.+||++|+|++|+|-+|++..... +|.-..+.+
T Consensus 205 ~~~~~~~~~~~~e~~~gplp~nwemayte~gevyfiDhntkttswLdprl~kkaK----------~~eeckd~e------ 268 (984)
T KOG3209|consen 205 TTPMDRYSPATQEDNLGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAK----------PPEECKDQE------ 268 (984)
T ss_pred CCcccccCccccccccCCCCccceEeEeecCeeEeeecccccceecChhhhcccC----------Chhhccccc------
Confidence 01679999999999999999999999999999999866321 111001111
Q ss_pred cCCCCCCCCCCCCceEeeccCCchhhhhcccccccccCcc
Q psy3114 422 VPANPYLNQEIPMWLSVYSRASQDLDHKLRWELFRLPELD 461 (515)
Q Consensus 422 ~~~n~~~~~~~p~wl~~y~~~~~~~d~~~~~~~f~~~~l~ 461 (515)
=||+-+.++. -+| -...|||+++-++|+.|-|+
T Consensus 269 ---lPygWeki~d--piY--g~yyvdHiN~~sq~enpvle 301 (984)
T KOG3209|consen 269 ---LPYGWEKIED--PIY--GTYYVDHINRKSQYENPVLE 301 (984)
T ss_pred ---ccccccccCC--ccc--eeEEecccchhhhhccchhh
Confidence 1232111111 012 23468899999999999884
No 45
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.54 E-value=8.3e-08 Score=63.48 Aligned_cols=30 Identities=43% Similarity=0.880 Sum_probs=27.5
Q ss_pred CCCceEeecCCCceEEeeCCCCcccccCCC
Q psy3114 361 PTGWERIENPEYGVYFVNHITRQAQYEHPC 390 (515)
Q Consensus 361 P~gWe~~~~~~g~~yy~nh~t~~t~w~~P~ 390 (515)
|.||+...|..|++||+|+.|++++|++|+
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 789999999889999999999999999996
No 46
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.51 E-value=3e-07 Score=85.34 Aligned_cols=97 Identities=18% Similarity=0.289 Sum_probs=50.1
Q ss_pred HHHHHhhcCCCceEEEEecCCCCC--cchhhccCceEEEccCCCCCCCC----------h-------------------H
Q psy3114 48 RKIHHLKCPNGVQLVVRLNQKNYD--ERKFTEAGLDHVDFYFPDGTAPP----------N-------------------D 96 (515)
Q Consensus 48 ~~i~~L~~~~gI~~VV~L~~~~y~--~~~~~~~gi~~~~~p~~D~~~P~----------~-------------------~ 96 (515)
+++..|. ++||++||+|....-. .......|+.++++|+.+..... . +
T Consensus 33 ~d~~~L~-~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 111 (164)
T PF13350_consen 33 ADLERLR-ELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAE 111 (164)
T ss_dssp HHHHHHH-HTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHH
T ss_pred HHHHHHH-hCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhH
Confidence 4566788 7999999999742111 11112348899999855432221 0 0
Q ss_pred HHHHHHHHHHhcCCCeEEEcCCCCChhhHHHHHHHHHhcCCCHHHHHHHH
Q psy3114 97 ILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWM 146 (515)
Q Consensus 97 ~i~~fi~~~~~~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s~~~Ai~~v 146 (515)
.+..+++.+....+||||||++|+.|||.++|+.|. ..|++-+++++..
T Consensus 112 ~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~-~lGV~~~~I~~DY 160 (164)
T PF13350_consen 112 AYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLS-LLGVPDEDIIADY 160 (164)
T ss_dssp HHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHH-HTT--HHHHHHHH
T ss_pred HHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHH-HcCCCHHHHHHHH
Confidence 123334444445689999999999999977777654 4899988877653
No 47
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.50 E-value=1.4e-07 Score=62.59 Aligned_cols=30 Identities=47% Similarity=1.114 Sum_probs=28.2
Q ss_pred CCCCcEEEEcCC-CceEEEeCCCCeeeccCC
Q psy3114 325 LPPGWSIDFTLR-GRKYYIDHNTKTTHWSHP 354 (515)
Q Consensus 325 LP~gWe~~~~~~-G~~yy~~~~t~tt~w~~P 354 (515)
||+||++..+.+ |++||+|+.|++|+|++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 799999999875 999999999999999988
No 48
>KOG1572|consensus
Probab=98.39 E-value=3e-06 Score=81.33 Aligned_cols=112 Identities=22% Similarity=0.289 Sum_probs=80.3
Q ss_pred HhhcCCCceEEEEecCCCCCc---chhhccCceEEEccCCCCC----CCCh----HHHHHHHHH-HHhcCCCeEEEcCCC
Q psy3114 52 HLKCPNGVQLVVRLNQKNYDE---RKFTEAGLDHVDFYFPDGT----APPN----DILCEFIKV-CEKYKGPIAVHCKAG 119 (515)
Q Consensus 52 ~L~~~~gI~~VV~L~~~~y~~---~~~~~~gi~~~~~p~~D~~----~P~~----~~i~~fi~~-~~~~~~pVlVHC~aG 119 (515)
.|+ ..+.++||.|+.+.|.. ..++..+|.++|+.+.... .|.. +.+..-++. +...+.|+||||.-|
T Consensus 80 FL~-~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rG 158 (249)
T KOG1572|consen 80 FLK-TLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRG 158 (249)
T ss_pred HHH-HhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCC
Confidence 344 46789999999877763 3567899999999876443 3332 334444443 335689999999999
Q ss_pred CChhhHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCChHHHHHHHH
Q psy3114 120 LGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDV 165 (515)
Q Consensus 120 vgRSgt~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~q~Fl~~l 165 (515)
..|||++|+|.. +..+|++..++...+..-.+.-....+.|+..+
T Consensus 159 khRtg~lVgclR-klq~W~lssil~Ey~~fa~sk~r~~d~~Fie~f 203 (249)
T KOG1572|consen 159 KHRTGCLVGCLR-KLQNWSLSSILDEYLRFAGSKGRRVDLRFIEMF 203 (249)
T ss_pred CcchhhhHHHHH-HHhccchhHHHHHHHHhccchhHHHHHHHHHHh
Confidence 999999999976 557899999998887766554333344566554
No 49
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.34 E-value=5.4e-07 Score=82.44 Aligned_cols=62 Identities=26% Similarity=0.368 Sum_probs=46.2
Q ss_pred cchhhccCceEEEccCCCCCCCChHHHHHHHHHHHh--cCCCeEEEcCCCCChhhHHHHHHHHH
Q psy3114 72 ERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEK--YKGPIAVHCKAGLGRTGCLIGAYMIK 133 (515)
Q Consensus 72 ~~~~~~~gi~~~~~p~~D~~~P~~~~i~~fi~~~~~--~~~pVlVHC~aGvgRSgt~iaayLm~ 133 (515)
.......|+.|+++|+.|+..|....+..|++.++. .+..+++||.+|.|||.++.++|.|.
T Consensus 85 ~~~~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 85 EELVEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 344556899999999999999999888888887776 46889999999999999999988653
No 50
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=98.33 E-value=1.1e-07 Score=97.17 Aligned_cols=69 Identities=28% Similarity=0.538 Sum_probs=59.0
Q ss_pred CCCCcEEEEcCCCceEEEeCCCCeeeccCCCcc-----CCC-CCCceEeecCCCceEEeeCCCCcccccCCCCCC
Q psy3114 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEK-----EGL-PTGWERIENPEYGVYFVNHITRQAQYEHPCAPH 393 (515)
Q Consensus 325 LP~gWe~~~~~~G~~yy~~~~t~tt~w~~P~~~-----~~L-P~gWe~~~~~~g~~yy~nh~t~~t~w~~P~~~~ 393 (515)
.-..|++..+++||+||+|..|+.++|+.|.+. ..| -.||.+..+.+|++||+|..|+++.|.-|....
T Consensus 13 ~~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~K 87 (590)
T COG5104 13 ARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERK 87 (590)
T ss_pred HHHHHHHhhCCCCceEEEecccccccccChHHHhcchHhhhchhhHHHHhhcCCceEEecCccccccccCChhhh
Confidence 335599999999999999999999999999532 112 257999999999999999999999999998754
No 51
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.28 E-value=1.1e-06 Score=58.66 Aligned_cols=31 Identities=48% Similarity=1.028 Sum_probs=29.7
Q ss_pred CCCCcEEEEcCCCceEEEeCCCCeeeccCCC
Q psy3114 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHPL 355 (515)
Q Consensus 325 LP~gWe~~~~~~G~~yy~~~~t~tt~w~~P~ 355 (515)
||.||+...+.+|+.||+|+.|+.++|++|+
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 7999999999999999999999999999995
No 52
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.07 E-value=5.3e-06 Score=54.73 Aligned_cols=30 Identities=50% Similarity=1.112 Sum_probs=28.7
Q ss_pred CCCcEEEEcCCCceEEEeCCCCeeeccCCC
Q psy3114 326 PPGWSIDFTLRGRKYYIDHNTKTTHWSHPL 355 (515)
Q Consensus 326 P~gWe~~~~~~G~~yy~~~~t~tt~w~~P~ 355 (515)
|+||+...+.+|++||+|+.|+.++|++|+
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 789999999999999999999999999995
No 53
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.99 E-value=5.6e-05 Score=65.14 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=69.2
Q ss_pred HHHHhhcCCCceEEEEecCCCCC---------cchhhccCceEEEccCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCCC
Q psy3114 49 KIHHLKCPNGVQLVVRLNQKNYD---------ERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAG 119 (515)
Q Consensus 49 ~i~~L~~~~gI~~VV~L~~~~y~---------~~~~~~~gi~~~~~p~~D~~~P~~~~i~~fi~~~~~~~~pVlVHC~aG 119 (515)
++..++ ..|+++|||.....-. ....+..|+.|.++|+-..+ .+.+.+..|.+.+...++|||.||+.|
T Consensus 20 D~~~ia-a~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~-iT~~dV~~f~~Al~eaegPVlayCrsG 97 (130)
T COG3453 20 DIASIA-ALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGG-ITEADVEAFQRALDEAEGPVLAYCRSG 97 (130)
T ss_pred HHHHHH-HhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCC-CCHHHHHHHHHHHHHhCCCEEeeecCC
Confidence 567777 6899999999632111 22344689999999975543 455778899999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCCCHHHHHHHHH
Q psy3114 120 LGRTGCLIGAYMIKHYKMSAMETIAWMR 147 (515)
Q Consensus 120 vgRSgt~iaayLm~~~~~s~~~Ai~~vR 147 (515)
.||-++=+.-. ..+|++.+++...=+
T Consensus 98 -tRs~~ly~~~~-~~~gm~~de~~a~g~ 123 (130)
T COG3453 98 -TRSLNLYGLGE-LDGGMSRDEIEALGQ 123 (130)
T ss_pred -chHHHHHHHHH-HhcCCCHHHHHHHHH
Confidence 58765544433 347999988776543
No 54
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=97.99 E-value=0.0001 Score=66.13 Aligned_cols=129 Identities=20% Similarity=0.258 Sum_probs=78.4
Q ss_pred HHHhhcCCCceEEEEecCC-CCCcchhhccCceEEEc-----cCCCCC--CCChHHHHHHHHHHHh--cCCCeEEEcCCC
Q psy3114 50 IHHLKCPNGVQLVVRLNQK-NYDERKFTEAGLDHVDF-----YFPDGT--APPNDILCEFIKVCEK--YKGPIAVHCKAG 119 (515)
Q Consensus 50 i~~L~~~~gI~~VV~L~~~-~y~~~~~~~~gi~~~~~-----p~~D~~--~P~~~~i~~fi~~~~~--~~~pVlVHC~aG 119 (515)
+.+....+|-+++|+|... .+........--.|+.+ ..+|.+ .|...-+...++.+.+ ...|+||||.+|
T Consensus 24 ~ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aG 103 (172)
T COG5350 24 IAETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAG 103 (172)
T ss_pred HHHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccc
Confidence 3444446889999999752 22211111111122222 233333 4555444444444444 368999999999
Q ss_pred CChhhHHHHH-HHHHhcCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCcchhHHH
Q psy3114 120 LGRTGCLIGA-YMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQHVLQNVGDKYRSIR 180 (515)
Q Consensus 120 vgRSgt~iaa-yLm~~~~~s~~~Ai~~vR~~Rp~~v~~~~q~Fl~~l~~~l~~~~~~~~~~~ 180 (515)
+|||...+.. -|.....++-.++.+.+|..+|.. +||.+-+.-....++.+|..+..+.
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~a--tPN~RliaI~d~~l~r~Grlv~ai~ 163 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPYA--TPNPRLIAIADAALGRKGRLVKAIK 163 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCccc--CCChhHHHHHHHHHhhcchHHHHHH
Confidence 9999754433 233346889999999999999955 4777777767777777776655543
No 55
>KOG1891|consensus
Probab=97.80 E-value=1.3e-05 Score=75.55 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=65.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCceEEEeCCCCeeeccCCC
Q psy3114 285 ISLHDIPDNMPYHFTPYPPQIPSISCHPSQQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPL 355 (515)
Q Consensus 285 ~~~~~lP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~yy~~~~t~tt~w~~P~ 355 (515)
..+.+||+||.-.+|-.|+.|+.-|......|..+-.-+-|||||+.-+++.-.+||+++.+|.++..||.
T Consensus 89 sedlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPlerEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc 159 (271)
T KOG1891|consen 89 SEDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLEREGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPC 159 (271)
T ss_pred cccCCCCCCcceeeEecCceeEeecCCCcccccChhhhccCCcchhhccccccceeeeecccchhhhcCCC
Confidence 46789999999999999999999998888889888888889999999999988899999999999999996
No 56
>KOG3259|consensus
Probab=97.74 E-value=1.4e-05 Score=70.82 Aligned_cols=36 Identities=33% Similarity=0.649 Sum_probs=31.7
Q ss_pred CCCCCCceEeec-CCCceEEeeCCCCcccccCCCCCC
Q psy3114 358 EGLPTGWERIEN-PEYGVYFVNHITRQAQYEHPCAPH 393 (515)
Q Consensus 358 ~~LP~gWe~~~~-~~g~~yy~nh~t~~t~w~~P~~~~ 393 (515)
..||+||+.+.+ ..|++||+||.|+.+|||.|--..
T Consensus 5 ~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~ 41 (163)
T KOG3259|consen 5 EKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTS 41 (163)
T ss_pred ccCCchhheeccccCCCcceeccccchhhccCCCccc
Confidence 469999999998 478999999999999999998765
No 57
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.63 E-value=0.00014 Score=72.26 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhcC-CCeEEEcCCCCChhhHHHHHHHHHhcCCCHHHHHHHHHHhCCCCC
Q psy3114 95 NDILCEFIKVCEKYK-GPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCV 154 (515)
Q Consensus 95 ~~~i~~fi~~~~~~~-~pVlVHC~aGvgRSgt~iaayLm~~~~~s~~~Ai~~vR~~Rp~~v 154 (515)
.+.+..++..+.... +|||+||.+|..|||.++|+|+...++.....+-.++..-+++..
T Consensus 121 ~e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~ 181 (249)
T COG2365 121 AERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEP 181 (249)
T ss_pred HHHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccch
Confidence 355666666665554 999999999999999999999988666666677777777777655
No 58
>KOG0940|consensus
Probab=97.40 E-value=0.00019 Score=74.46 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=62.8
Q ss_pred CCCCCCCCCCcEEEEcCCC---ceEEEeCCCC-eeeccCCCcc---------------CCCCCCceEeecCCCceEEeeC
Q psy3114 319 ASDELPLPPGWSIDFTLRG---RKYYIDHNTK-TTHWSHPLEK---------------EGLPTGWERIENPEYGVYFVNH 379 (515)
Q Consensus 319 ~~~~~~LP~gWe~~~~~~G---~~yy~~~~t~-tt~w~~P~~~---------------~~LP~gWe~~~~~~g~~yy~nh 379 (515)
+.+.+.||.+|+...+.+| ..||.+|... .|.|.+|... -+|| ||+.++++.|..||++|
T Consensus 55 ~ldy~glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~~p~~l~~~~~vg~~~~l~-~~h~~~~~~g~r~F~~~ 133 (358)
T KOG0940|consen 55 GLDYGGLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGVNPGHLTYFRFVGGVLALA-GWHMRFTDTGQRPFYKH 133 (358)
T ss_pred ccccCCCCcceeeeeccccCCcceeeeeecccccccccCCccCCCCCccccccccccccccc-ceeeEecCCCceehhhh
Confidence 3356779999999999998 8999999999 4999999764 1122 79999999999999999
Q ss_pred CCCcccccCCCCC
Q psy3114 380 ITRQAQYEHPCAP 392 (515)
Q Consensus 380 ~t~~t~w~~P~~~ 392 (515)
+.++|+|-+|+..
T Consensus 134 i~~ktt~ldd~e~ 146 (358)
T KOG0940|consen 134 ILKKTTTLDDREA 146 (358)
T ss_pred hhcCccccCchhh
Confidence 9999999999887
No 59
>KOG3259|consensus
Probab=97.10 E-value=0.00027 Score=62.72 Aligned_cols=36 Identities=36% Similarity=0.876 Sum_probs=32.4
Q ss_pred CCCCCCCcEEEEc-CCCceEEEeCCCCeeeccCCCcc
Q psy3114 322 ELPLPPGWSIDFT-LRGRKYYIDHNTKTTHWSHPLEK 357 (515)
Q Consensus 322 ~~~LP~gWe~~~~-~~G~~yy~~~~t~tt~w~~P~~~ 357 (515)
...||+||+.++. +.|+.||+|+.|+.++|+.|...
T Consensus 4 ~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 4 EEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred cccCCchhheeccccCCCcceeccccchhhccCCCcc
Confidence 4569999999995 69999999999999999999754
No 60
>KOG0155|consensus
Probab=96.98 E-value=0.001 Score=70.15 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=26.7
Q ss_pred CceEeecCCCceEEeeCCCCcccccCCCC
Q psy3114 363 GWERIENPEYGVYFVNHITRQAQYEHPCA 391 (515)
Q Consensus 363 gWe~~~~~~g~~yy~nh~t~~t~w~~P~~ 391 (515)
.|-.+.+.++++||+|..|+.+.|+.|.=
T Consensus 115 dWcVVwTgD~RvFFyNpktk~S~We~P~d 143 (617)
T KOG0155|consen 115 DWCVVWTGDNRVFFYNPKTKLSVWERPLD 143 (617)
T ss_pred CeEEEEeCCCceEEeCCccccccccCchh
Confidence 39999999999999999999999998853
No 61
>KOG3552|consensus
Probab=91.97 E-value=0.043 Score=61.87 Aligned_cols=44 Identities=32% Similarity=0.700 Sum_probs=31.3
Q ss_pred CeeeccCCCcc----CCCCCCceEeecCCCceEEeeCCCCcccccCCC
Q psy3114 347 KTTHWSHPLEK----EGLPTGWERIENPEYGVYFVNHITRQAQYEHPC 390 (515)
Q Consensus 347 ~tt~w~~P~~~----~~LP~gWe~~~~~~g~~yy~nh~t~~t~w~~P~ 390 (515)
..++|..++.. ..||+||++..|..|+.||+||.+++|++++|.
T Consensus 3 ~~a~~~p~~~~~~~~~~v~~~~~r~~dsk~r~~y~~~~~~~~~~~~~~ 50 (1298)
T KOG3552|consen 3 QSAGWLPACEDWSKHEELSYGWERAIDSKGRSYYINHLNKTTTYEAPE 50 (1298)
T ss_pred ccccCCCCccccccccccchHHHHhhhcccchhHHhhcCCccCcCCCc
Confidence 34556555543 568888888888888888888888888776543
No 62
>KOG4471|consensus
Probab=91.88 E-value=0.24 Score=53.84 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCCeEEEcCCCCChhhHHHHHH
Q psy3114 100 EFIKVCEKYKGPIAVHCKAGLGRTGCLIGAY 130 (515)
Q Consensus 100 ~fi~~~~~~~~pVlVHC~aGvgRSgt~iaay 130 (515)
...+.++..+.+|||||+.|-.||+.++++-
T Consensus 365 ~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA 395 (717)
T KOG4471|consen 365 RIADKVESESRSVLVHCSDGWDRTAQLVSLA 395 (717)
T ss_pred HHHHHHhcCCceEEEEcCCCccchHHHHHHH
Confidence 3344555668999999999999999988774
No 63
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=91.71 E-value=0.065 Score=55.83 Aligned_cols=27 Identities=30% Similarity=0.784 Sum_probs=26.1
Q ss_pred CceEeecCCCceEEeeCCCCcccccCC
Q psy3114 363 GWERIENPEYGVYFVNHITRQAQYEHP 389 (515)
Q Consensus 363 gWe~~~~~~g~~yy~nh~t~~t~w~~P 389 (515)
-|++..+++|++||+|..|+.++|+.|
T Consensus 16 ~w~e~k~~dgRiYYYN~~T~kS~weKP 42 (590)
T COG5104 16 EWEELKAPDGRIYYYNKRTGKSSWEKP 42 (590)
T ss_pred HHHHhhCCCCceEEEecccccccccCh
Confidence 499999999999999999999999999
No 64
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=91.13 E-value=0.51 Score=42.67 Aligned_cols=64 Identities=23% Similarity=0.187 Sum_probs=41.9
Q ss_pred CCCCCCCChHHHHHHHHHHHh------cCCCeEEEcCCCCCh----hhHHHHHHHHHhcCCCHHHHHHHHHHhC
Q psy3114 87 FPDGTAPPNDILCEFIKVCEK------YKGPIAVHCKAGLGR----TGCLIGAYMIKHYKMSAMETIAWMRICR 150 (515)
Q Consensus 87 ~~D~~~P~~~~i~~fi~~~~~------~~~pVlVHC~aGvgR----Sgt~iaayLm~~~~~s~~~Ai~~vR~~R 150 (515)
..|+|..+...+.+|+..+.+ ..+..+|||++.-.+ ++.++++|+|...++++++|++-+...-
T Consensus 38 ~~DFGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 38 YADFGPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp SS------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred cCcCCCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 578888888888888876654 358899999876544 4678888999999999999999987764
No 65
>PF00473 CRF: Corticotropin-releasing factor family; InterPro: IPR000187 Corticotropin-releasing factor (CRF), urotensin-I, urocortin and sauvagine form a family of related neuropeptides in vertebrates. The family can be grouped into 2 separate paralogous lineages, with urotensin-I, urocortin and sauvagine in one group and CRF forming the other group. Urocortin and sauvagine appear to represent orthologues of fish urotensin-I in mammals and amphibians, respectively. The peptides have a variety of physiological effects on stress and anxiety, vasoregulation, thermoregulation, growth and metabolism, metamorphosis and reproduction in various species, and are all released as preprohormones []. CRF [] is a hormone found mainly in the paraventricular nucleus of the mammalian hypothalamus that regulates the release of corticotropin (ACTH) from the pituitary gland. From here, CRF is transported to the anterior pituitary, stimulating adrenocorticotropic hormone (ACTH) release via CRF type 1 receptors, thereby activating the hypothalamo-pituitary-adrenocortical axis (HPA) and thus glucocorticoid release. CRF is evolutionary related to a number of other active peptides. Urocortin acts in vitro to stimulate the secretion of adrenocorticotropic hormone. Urotensin is found in the teleost caudal neurosecretory system and may play a role in osmoregulation and as a corticotropin-releasing factor. Urotensin-I is released from the urophysis of fish, and produces ACTH and subsequent cortisol release in vivo. The nonhormonal portion of the prohormone is thought to be the urotensin binding protein (urophysin). Sauvagine (P01144 from SWISSPROT), isolated from frog skin, has a potent hypotensive and diuretic effect.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3EHU_C 3EHT_B 2RMF_A 3N96_G.
Probab=89.37 E-value=0.98 Score=31.44 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHhhh
Q psy3114 477 DIVMRHEAYRSALLCEMDRRLSQSQQDARQIIESV 511 (515)
Q Consensus 477 ~~v~~~e~~r~~l~~~~~~~~~~~~~~~~~~~~~~ 511 (515)
-|+--++.+|+.|..|++||+.++.+.-|+++++|
T Consensus 5 SIdl~~~vLR~~l~~~~a~~~~~q~~~NR~~L~~i 39 (39)
T PF00473_consen 5 SIDLTFHVLRQRLELERAERQMKQAQANRKFLDSI 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47888999999999999999888777778887765
No 66
>KOG0940|consensus
Probab=89.37 E-value=0.69 Score=48.31 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=55.8
Q ss_pred CCCCCCceEeecCCC---ceEEeeCCCC-cccccCCCCCCCCCCcccccccCCCCCCCCcccCCCCcccCCCCCCCCCCC
Q psy3114 358 EGLPTGWERIENPEY---GVYFVNHITR-QAQYEHPCAPHYIYQPEVRIALAPPPPPRHTQYQPHSVIVPANPYLNQEIP 433 (515)
Q Consensus 358 ~~LP~gWe~~~~~~g---~~yy~nh~t~-~t~w~~P~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~n~~~~~~~p 433 (515)
++||.+|+...+.+| ..||++|.+. .|+|.+|.... .| + |++. +.|.. +-.-.|
T Consensus 59 ~glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~------~p----~-------~l~~--~~~vg---~~~~l~ 116 (358)
T KOG0940|consen 59 GGLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGV------NP----G-------HLTY--FRFVG---GVLALA 116 (358)
T ss_pred CCCCcceeeeeccccCCcceeeeeecccccccccCCccCC------CC----C-------cccc--ccccc---cccccc
Confidence 689999999999999 8999999999 59999999973 11 0 0100 11111 111234
Q ss_pred CceEeeccCCc--hhhhhcccccccccCcc
Q psy3114 434 MWLSVYSRASQ--DLDHKLRWELFRLPELD 461 (515)
Q Consensus 434 ~wl~~y~~~~~--~~d~~~~~~~f~~~~l~ 461 (515)
-|-+.|..+.. +++|+++-+...+|..+
T Consensus 117 ~~h~~~~~~g~r~F~~~i~~ktt~ldd~e~ 146 (358)
T KOG0940|consen 117 GWHMRFTDTGQRPFYKHILKKTTTLDDREA 146 (358)
T ss_pred ceeeEecCCCceehhhhhhcCccccCchhh
Confidence 67777755533 88999887777776665
No 67
>KOG4286|consensus
Probab=89.35 E-value=0.12 Score=57.26 Aligned_cols=28 Identities=36% Similarity=0.755 Sum_probs=25.4
Q ss_pred ceEeecCCCceEEeeCCCCcccccCCCC
Q psy3114 364 WERIENPEYGVYFVNHITRQAQYEHPCA 391 (515)
Q Consensus 364 We~~~~~~g~~yy~nh~t~~t~w~~P~~ 391 (515)
|+++.++.--+|||||.+.+|+|+||..
T Consensus 354 w~rais~nkvpyyinh~~q~t~wdhp~~ 381 (966)
T KOG4286|consen 354 WERAISPNKVPYYINHETQTTCWDHPKM 381 (966)
T ss_pred chhccCccccchhhcccchhhhccchHH
Confidence 9999999778999999999999999975
No 68
>KOG4239|consensus
Probab=88.80 E-value=0.55 Score=47.22 Aligned_cols=43 Identities=26% Similarity=0.502 Sum_probs=37.7
Q ss_pred cccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3114 452 WELFRLPELDCFNGMLTRLYKQELEDIVMRHEAYRSALLCEMD 494 (515)
Q Consensus 452 ~~~f~~~~l~~~~~~~~~~~~~~~~~~v~~~e~~r~~l~~~~~ 494 (515)
|+-|..|+|+.|...|..==++|+.+|++||-++|..|++=++
T Consensus 297 wdaFemPeLenFL~~L~eEE~rev~qi~~Ky~~~R~~i~qrl~ 339 (348)
T KOG4239|consen 297 WDAFEMPELENFLRILQEEEKREVFQIQQKYQQLRAEIRQRLH 339 (348)
T ss_pred eeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999998999999999999999966655443
No 69
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.29 E-value=0.1 Score=60.15 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=64.3
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCCCcc------------------------CCCCCCceEeecCCCceEEee
Q psy3114 323 LPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEK------------------------EGLPTGWERIENPEYGVYFVN 378 (515)
Q Consensus 323 ~~LP~gWe~~~~~~G~~yy~~~~t~tt~w~~P~~~------------------------~~LP~gWe~~~~~~g~~yy~n 378 (515)
...|+||+..+...++.+++++.+.++.|..|+.. ++|+.+|+.+.....++|++.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~ 465 (872)
T COG5021 386 RNKPTGWSSSIEDLGQFLFSDFLTSSSTYEDLRREQLGRESDESFYVASNVQQQRASREGPLLSGWKTRLNNLYRFYFVE 465 (872)
T ss_pred hcCCccchhhhhhhHHHHHhhhhcchhhhhchhhhhhhhhhccchhhhcccccccccccccccchHHHHhhhhheeeehh
Confidence 45799999999999999999999999999999742 678999999999999999999
Q ss_pred CCCCcccccCCCCCC
Q psy3114 379 HITRQAQYEHPCAPH 393 (515)
Q Consensus 379 h~t~~t~w~~P~~~~ 393 (515)
|.+++++|.+|+++.
T Consensus 466 h~k~~~~~~~~~~g~ 480 (872)
T COG5021 466 HRKKTLTKNDSRLGS 480 (872)
T ss_pred cccceeeecCCCCch
Confidence 999999999998543
No 70
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=86.39 E-value=2.9 Score=45.14 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=41.3
Q ss_pred cCceEEEccCCCCCCCCh------HHHHHHHHHHHhc--CCCeEEEcCCCCChhhHHHHHHHHHh
Q psy3114 78 AGLDHVDFYFPDGTAPPN------DILCEFIKVCEKY--KGPIAVHCKAGLGRTGCLIGAYMIKH 134 (515)
Q Consensus 78 ~gi~~~~~p~~D~~~P~~------~~i~~fi~~~~~~--~~pVlVHC~aGvgRSgt~iaayLm~~ 134 (515)
....++++++..+..-.. ..+..|+...... +.+|+|+|..|...|..++.+.|+..
T Consensus 337 ~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~ 401 (451)
T PF04179_consen 337 KSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKL 401 (451)
T ss_pred CCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHh
Confidence 456788888776544433 2356666655444 88999999999999998888888753
No 71
>KOG0155|consensus
Probab=83.72 E-value=3.3 Score=44.48 Aligned_cols=28 Identities=29% Similarity=0.761 Sum_probs=26.7
Q ss_pred cEEEEcCCCceEEEeCCCCeeeccCCCc
Q psy3114 329 WSIDFTLRGRKYYIDHNTKTTHWSHPLE 356 (515)
Q Consensus 329 We~~~~~~G~~yy~~~~t~tt~w~~P~~ 356 (515)
|-+-.|.+|++||+|..|+-+.|+.|..
T Consensus 116 WcVVwTgD~RvFFyNpktk~S~We~P~d 143 (617)
T KOG0155|consen 116 WCVVWTGDNRVFFYNPKTKLSVWERPLD 143 (617)
T ss_pred eEEEEeCCCceEEeCCccccccccCchh
Confidence 9999999999999999999999999964
No 72
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.43 E-value=0.22 Score=57.46 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=91.8
Q ss_pred CCCCCCCCCCcEEEEcCCCceEEEeCCCCeeeccCCCcc-----------------------------------------
Q psy3114 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEK----------------------------------------- 357 (515)
Q Consensus 319 ~~~~~~LP~gWe~~~~~~G~~yy~~~~t~tt~w~~P~~~----------------------------------------- 357 (515)
......++++|+...+..|+.||++|.+..+.|..|...
T Consensus 293 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~ 372 (872)
T COG5021 293 EDSLLRLNSLFSTRADSFGRTYYLDHDRILTQYSRPLLEETLGESTSFLVVNNDDSSSIKDLPHQVGSNPFLEAHPEFSE 372 (872)
T ss_pred hhhcccccccccchhhhcchhhhhhhhhhhhhhhhccchhhhhhhhhhccccccchhhhhhcccccCCcccccccHHHHH
Confidence 455667899999999999999999999999999888310
Q ss_pred -------------CCCCCCceEeecCCCceEEeeCCCCcccccCCCCCCCCCC--cccccccCCCCCCCCcccCCCCccc
Q psy3114 358 -------------EGLPTGWERIENPEYGVYFVNHITRQAQYEHPCAPHYIYQ--PEVRIALAPPPPPRHTQYQPHSVIV 422 (515)
Q Consensus 358 -------------~~LP~gWe~~~~~~g~~yy~nh~t~~t~w~~P~~~~~~~~--~~~~~~~~~~p~p~~~~~~~~~~~~ 422 (515)
...|.||+......++.+++++.+..+.|++|+-...+.. ...+-....++... ...++..+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~ 449 (872)
T COG5021 373 LLKNQSRGTTRDFRNKPTGWSSSIEDLGQFLFSDFLTSSSTYEDLRREQLGRESDESFYVASNVQQQRA---SREGPLLS 449 (872)
T ss_pred HHhhhcccccchhhcCCccchhhhhhhHHHHHhhhhcchhhhhchhhhhhhhhhccchhhhcccccccc---cccccccc
Confidence 3569999999999999999999999999999988642111 11111111111110 11111111
Q ss_pred CCCCCCCCCCCCceEeeccCCchhhhhcccccccccCccchHHHH
Q psy3114 423 PANPYLNQEIPMWLSVYSRASQDLDHKLRWELFRLPELDCFNGML 467 (515)
Q Consensus 423 ~~n~~~~~~~p~wl~~y~~~~~~~d~~~~~~~f~~~~l~~~~~~~ 467 (515)
+ -..+...-.. ...++|+.+-..|-++++.++...+
T Consensus 450 ~----~~~r~~~~~~-----~~~~~h~k~~~~~~~~~~g~~~~~~ 485 (872)
T COG5021 450 G----WKTRLNNLYR-----FYFVEHRKKTLTKNDSRLGSFISLN 485 (872)
T ss_pred h----HHHHhhhhhe-----eeehhcccceeeecCCCCchhhhhc
Confidence 1 0112222222 2378999999999999987776655
No 73
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=81.35 E-value=2.2 Score=44.69 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=19.2
Q ss_pred hcCCCeEEEcCCCCChhhHHHHHH
Q psy3114 107 KYKGPIAVHCKAGLGRTGCLIGAY 130 (515)
Q Consensus 107 ~~~~pVlVHC~aGvgRSgt~iaay 130 (515)
..+..|||||+.|-+||..++++.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ 252 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLA 252 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHH
Confidence 468999999999999998887774
No 74
>KOG4334|consensus
Probab=77.15 E-value=1.8 Score=46.19 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=22.7
Q ss_pred CCCCCCceEeecCCCceEEeeCCCCcccccCCCCC
Q psy3114 358 EGLPTGWERIENPEYGVYFVNHITRQAQYEHPCAP 392 (515)
Q Consensus 358 ~~LP~gWe~~~~~~g~~yy~nh~t~~t~w~~P~~~ 392 (515)
.+||.||-..+..+|-+-|++..|+..+|.+|.+-
T Consensus 153 epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYfl 187 (650)
T KOG4334|consen 153 EPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFL 187 (650)
T ss_pred CcCCCceEEEeecCCCceEEeeeeeeEeccCceee
Confidence 45666666666666666666666666666666654
No 75
>KOG1089|consensus
Probab=74.24 E-value=6.1 Score=43.49 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=25.5
Q ss_pred hhhhHhcccCccccccccCCcchhhhhhhcccccc
Q psy3114 240 NNFVLANIKKPLTTLCRRKPNNVMNARAETQADNL 274 (515)
Q Consensus 240 ~~~~~~~~~~~~t~~~~~~~~n~~~~~~e~~~~~~ 274 (515)
.+|++...+--..|.|..=..|-++.|.++....-
T Consensus 437 e~fLi~L~~h~ys~qfGtFl~NsekeR~e~~~~~k 471 (573)
T KOG1089|consen 437 ERFLIKLHEHAYSSQFGTFLGNSEKERRELNLSEK 471 (573)
T ss_pred HHHHHHHHHhhHHhhhccccccCHHHHHHhccccc
Confidence 35777777777778888888888888888765433
No 76
>smart00039 CRF corticotropin-releasing factor.
Probab=70.33 E-value=6.9 Score=27.42 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHhhh
Q psy3114 477 DIVMRHEAYRSALLCEMDRRLSQSQQDARQIIESV 511 (515)
Q Consensus 477 ~~v~~~e~~r~~l~~~~~~~~~~~~~~~~~~~~~~ 511 (515)
-|+--++.+|+.|..|.++|+.++-+.-|.++++|
T Consensus 6 SIdl~~~vLR~~l~~e~a~~~~~qa~~NR~~L~~i 40 (40)
T smart00039 6 SIDLTFDLLRQRLELEKAERRREQAQANRNFLDDV 40 (40)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36667899999999999999886655667776654
No 77
>KOG4334|consensus
Probab=65.92 E-value=6.3 Score=42.21 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=32.4
Q ss_pred CCCCCCCCCcEEEEcCCCceEEEeCCCCeeeccCC
Q psy3114 320 SDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354 (515)
Q Consensus 320 ~~~~~LP~gWe~~~~~~G~~yy~~~~t~tt~w~~P 354 (515)
+...+||.||....-..|-..|+...|+..+|..|
T Consensus 150 ~~~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrP 184 (650)
T KOG4334|consen 150 DKSEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRP 184 (650)
T ss_pred CCCCcCCCceEEEeecCCCceEEeeeeeeEeccCc
Confidence 45688999999999999999999999999999998
No 78
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=60.22 E-value=13 Score=27.10 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=33.1
Q ss_pred cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3114 456 RLPELDCFNGMLTRLYKQELEDIVMRHEAYRSALLCEMD 494 (515)
Q Consensus 456 ~~~~l~~~~~~~~~~~~~~~~~~v~~~e~~r~~l~~~~~ 494 (515)
+..+|......|..-.-+|++.|-++|...|+=|+.=|+
T Consensus 9 s~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 9 SYEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 456777788888999999999999999999999887665
No 79
>KOG4286|consensus
Probab=55.56 E-value=3.6 Score=46.12 Aligned_cols=27 Identities=41% Similarity=0.877 Sum_probs=25.3
Q ss_pred cEEEEcCCCceEEEeCCCCeeeccCCC
Q psy3114 329 WSIDFTLRGRKYYIDHNTKTTHWSHPL 355 (515)
Q Consensus 329 We~~~~~~G~~yy~~~~t~tt~w~~P~ 355 (515)
|+..+.++--.|||||.|.+|+|+||.
T Consensus 354 w~rais~nkvpyyinh~~q~t~wdhp~ 380 (966)
T KOG4286|consen 354 WERAISPNKVPYYINHETQTTCWDHPK 380 (966)
T ss_pred chhccCccccchhhcccchhhhccchH
Confidence 899999888899999999999999995
No 80
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=54.22 E-value=30 Score=29.61 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHH-HhcCCCeEEEcCCCCChhhHHHHHHHHHhcCCC
Q psy3114 93 PPNDILCEFIKVC-EKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS 138 (515)
Q Consensus 93 P~~~~i~~fi~~~-~~~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s 138 (515)
++...+.+++... ...+.+|+|+|..| |+++..++..|. ..|++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~vv~~c~~g-~~~a~~~~~~l~-~~G~~ 106 (122)
T cd01448 62 PSPEEFAELLGSLGISNDDTVVVYDDGG-GFFAARAWWTLR-YFGHE 106 (122)
T ss_pred CCHHHHHHHHHHcCCCCCCEEEEECCCC-CccHHHHHHHHH-HcCCC
Confidence 3444455555432 23578999999998 555555554443 34543
No 81
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=51.24 E-value=17 Score=30.16 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=19.3
Q ss_pred hcCCCeEEEcCCCCChhhHHHHHHHHHhcCCC
Q psy3114 107 KYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS 138 (515)
Q Consensus 107 ~~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s 138 (515)
..+.+|+|+|..| .||... +.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCCc
Confidence 4578999999998 688643 3344 334553
No 82
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=50.04 E-value=27 Score=29.40 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=21.5
Q ss_pred HHHHHHHHH-hcCCCeEEEcCCCCChhhHHHHHHHHHhcCC
Q psy3114 98 LCEFIKVCE-KYKGPIAVHCKAGLGRTGCLIGAYMIKHYKM 137 (515)
Q Consensus 98 i~~fi~~~~-~~~~pVlVHC~aGvgRSgt~iaayLm~~~~~ 137 (515)
+...+..+. ..+.+|+|+|..|. ||. .++..| ...|+
T Consensus 54 l~~~~~~l~~~~~~~ivv~C~~G~-rs~-~a~~~L-~~~G~ 91 (109)
T cd01533 54 LVLRVGELAPDPRTPIVVNCAGRT-RSI-IGAQSL-INAGL 91 (109)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCc-hHH-HHHHHH-HHCCC
Confidence 334444332 24679999999995 774 333334 34555
No 83
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=48.56 E-value=16 Score=30.28 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=19.0
Q ss_pred HhcCCCeEEEcCCCCChhhHHHHHHHHH
Q psy3114 106 EKYKGPIAVHCKAGLGRTGCLIGAYMIK 133 (515)
Q Consensus 106 ~~~~~pVlVHC~aGvgRSgt~iaayLm~ 133 (515)
...+.+++|+|..| .||+ .++.+|..
T Consensus 58 ~~~~~~ivv~C~~G-~rS~-~aa~~L~~ 83 (110)
T COG0607 58 LPDDDPIVVYCASG-VRSA-AAAAALKL 83 (110)
T ss_pred cCCCCeEEEEeCCC-CChH-HHHHHHHH
Confidence 45689999999999 5885 44455544
No 84
>KOG3552|consensus
Probab=46.63 E-value=5.4 Score=45.89 Aligned_cols=34 Identities=38% Similarity=0.698 Sum_probs=29.6
Q ss_pred CCCCCCCcEEEEcCCCceEEEeCCCCeeeccCCC
Q psy3114 322 ELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPL 355 (515)
Q Consensus 322 ~~~LP~gWe~~~~~~G~~yy~~~~t~tt~w~~P~ 355 (515)
...|++||+..+++.|+.||++|..+++....|.
T Consensus 17 ~~~v~~~~~r~~dsk~r~~y~~~~~~~~~~~~~~ 50 (1298)
T KOG3552|consen 17 HEELSYGWERAIDSKGRSYYINHLNKTTTYEAPE 50 (1298)
T ss_pred ccccchHHHHhhhcccchhHHhhcCCccCcCCCc
Confidence 3569999999999999999999999988877763
No 85
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=45.80 E-value=50 Score=30.40 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=15.5
Q ss_pred hcCCCeEEEcCCCCChhhH
Q psy3114 107 KYKGPIAVHCKAGLGRTGC 125 (515)
Q Consensus 107 ~~~~pVlVHC~aGvgRSgt 125 (515)
..+.+|+|.|..|..||..
T Consensus 114 ~~d~~IVvYC~~G~~~S~~ 132 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN 132 (162)
T ss_pred CCCCEEEEEECCCCHHHHH
Confidence 3578999999998777765
No 86
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=43.57 E-value=22 Score=29.25 Aligned_cols=28 Identities=11% Similarity=0.250 Sum_probs=18.4
Q ss_pred cCCCeEEEcCCCCChhhHHHHHHHHHhcCCC
Q psy3114 108 YKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS 138 (515)
Q Consensus 108 ~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s 138 (515)
.+.+|+|+|..| +||.. ++..| ...|++
T Consensus 60 ~~~~ivv~C~~G-~rs~~-aa~~L-~~~G~~ 87 (100)
T cd01523 60 DDQEVTVICAKE-GSSQF-VAELL-AERGYD 87 (100)
T ss_pred CCCeEEEEcCCC-CcHHH-HHHHH-HHcCce
Confidence 568999999999 57753 33334 335554
No 87
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=41.00 E-value=38 Score=27.27 Aligned_cols=10 Identities=50% Similarity=1.158 Sum_probs=5.0
Q ss_pred CCCCCcEEEE
Q psy3114 324 PLPPGWSIDF 333 (515)
Q Consensus 324 ~LP~gWe~~~ 333 (515)
|||.||+...
T Consensus 7 Plp~GW~R~~ 16 (77)
T smart00391 7 PLPCGWRRET 16 (77)
T ss_pred CCCCCcEEEE
Confidence 3555554443
No 88
>PLN02160 thiosulfate sulfurtransferase
Probab=40.56 E-value=32 Score=30.61 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=19.0
Q ss_pred hcCCCeEEEcCCCCChhhHHHHHHHHHhcCCC
Q psy3114 107 KYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS 138 (515)
Q Consensus 107 ~~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s 138 (515)
..+.+|+|||..| +||... +..| ...|++
T Consensus 79 ~~~~~IivyC~sG-~RS~~A-a~~L-~~~G~~ 107 (136)
T PLN02160 79 NPADDILVGCQSG-ARSLKA-TTEL-VAAGYK 107 (136)
T ss_pred CCCCcEEEECCCc-HHHHHH-HHHH-HHcCCC
Confidence 4578999999999 688644 3333 334543
No 89
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=40.24 E-value=29 Score=27.98 Aligned_cols=21 Identities=33% Similarity=0.911 Sum_probs=15.3
Q ss_pred CCCCCceEeec--------CCCceEEeeC
Q psy3114 359 GLPTGWERIEN--------PEYGVYFVNH 379 (515)
Q Consensus 359 ~LP~gWe~~~~--------~~g~~yy~nh 379 (515)
+||.||++..- ..+.|||+..
T Consensus 7 Plp~GW~R~~~~r~~g~~~~~~dV~Y~sP 35 (77)
T smart00391 7 PLPCGWRRETKQRKSGRSAGKFDVYYISP 35 (77)
T ss_pred CCCCCcEEEEEEecCCCCCCcccEEEECC
Confidence 49999988775 2345899854
No 90
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=36.05 E-value=51 Score=26.54 Aligned_cols=9 Identities=56% Similarity=1.568 Sum_probs=4.4
Q ss_pred CCCCcEEEE
Q psy3114 325 LPPGWSIDF 333 (515)
Q Consensus 325 LP~gWe~~~ 333 (515)
||+||....
T Consensus 7 lp~GW~r~~ 15 (77)
T cd01396 7 LPPGWKREL 15 (77)
T ss_pred CCCCCEEEE
Confidence 555554433
No 91
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=35.18 E-value=51 Score=25.15 Aligned_cols=11 Identities=55% Similarity=1.392 Sum_probs=6.3
Q ss_pred CCCCCCcEEEE
Q psy3114 323 LPLPPGWSIDF 333 (515)
Q Consensus 323 ~~LP~gWe~~~ 333 (515)
.|+|.||....
T Consensus 4 ~P~p~GW~R~~ 14 (62)
T cd00122 4 DPLPPGWKREL 14 (62)
T ss_pred CCCCCCeEEEE
Confidence 35666665554
No 92
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=33.74 E-value=56 Score=28.99 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3114 470 LYKQELEDIVMRHEAYRSALLCEMDRRLS 498 (515)
Q Consensus 470 ~~~~~~~~~v~~~e~~r~~l~~~~~~~~~ 498 (515)
-||.+-..|+++|..++..|..||++.++
T Consensus 86 ~yk~eYk~llk~y~~~~~~L~k~I~~~e~ 114 (126)
T PF09403_consen 86 WYKDEYKELLKKYKDLLNKLDKEIAEQEQ 114 (126)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677779999999999999999988754
No 93
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=31.42 E-value=65 Score=26.13 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=16.0
Q ss_pred cCCCeEEEcCCCCChhhHHHHHHHH
Q psy3114 108 YKGPIAVHCKAGLGRTGCLIGAYMI 132 (515)
Q Consensus 108 ~~~pVlVHC~aGvgRSgt~iaayLm 132 (515)
.+.+|+|.|..|...+...++..|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~ 73 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLS 73 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHH
Confidence 3679999999984333344444443
No 94
>smart00400 ZnF_CHCC zinc finger.
Probab=30.90 E-value=65 Score=23.79 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=22.9
Q ss_pred EEEcCCCCChhhHHHHHHHHHhcCCCHHHHHHHH
Q psy3114 113 AVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWM 146 (515)
Q Consensus 113 lVHC~aGvgRSgt~iaayLm~~~~~s~~~Ai~~v 146 (515)
..||.+ .|..|-+|..+ +...+++..+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~i~fv-~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNVISFL-MKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCHHHHH-HHHHCcCHHHHHHHh
Confidence 578985 46777665554 444688999999875
No 95
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.66 E-value=77 Score=27.54 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=42.6
Q ss_pred hhhhhcccccccccCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHH
Q psy3114 445 DLDHKLRWELFRLPELDCFNGMLTRLYKQE-LEDIVMRHEAYRSALLCEMDRRLSQSQQDARQI 507 (515)
Q Consensus 445 ~~d~~~~~~~f~~~~l~~~~~~~~~~~~~~-~~~~v~~~e~~r~~l~~~~~~~~~~~~~~~~~~ 507 (515)
.+|..+ +.+|++.+| .+=+.|+.|+ +...+...+..-++++.|+++-++..+..+.+|
T Consensus 52 ~~dp~~-~klfrLaQl----~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (118)
T PF13815_consen 52 FVDPNF-LKLFRLAQL----SIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEI 110 (118)
T ss_pred CCCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666 788999988 7777788887 667788888888888888887776555544443
No 96
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=28.99 E-value=1e+02 Score=26.32 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=14.6
Q ss_pred hcCCCeEEEcCCCCChhhHH
Q psy3114 107 KYKGPIAVHCKAGLGRTGCL 126 (515)
Q Consensus 107 ~~~~pVlVHC~aGvgRSgt~ 126 (515)
..+.+|+|+|..| .||...
T Consensus 62 ~~~~~ivv~C~~G-~rs~~a 80 (117)
T cd01522 62 GKDRPVLLLCRSG-NRSIAA 80 (117)
T ss_pred CCCCeEEEEcCCC-ccHHHH
Confidence 4678999999998 477643
No 97
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=28.97 E-value=1.1e+02 Score=21.47 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHHHHHHhhh
Q psy3114 481 RHEAYRSALLCEMDRRLSQSQQDARQIIESV 511 (515)
Q Consensus 481 ~~e~~r~~l~~~~~~~~~~~~~~~~~~~~~~ 511 (515)
.+|++.++|+.||-+ +.|..-..||+++
T Consensus 4 dle~~KqEIL~Evrk---El~K~K~EIIeA~ 31 (40)
T PF08776_consen 4 DLERLKQEILEEVRK---ELQKVKEEIIEAI 31 (40)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 467777777777743 4444555566653
No 98
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=28.66 E-value=47 Score=26.59 Aligned_cols=10 Identities=50% Similarity=1.245 Sum_probs=4.2
Q ss_pred CCCCCCcEEE
Q psy3114 323 LPLPPGWSID 332 (515)
Q Consensus 323 ~~LP~gWe~~ 332 (515)
.+||.||...
T Consensus 9 ~~Lp~GW~re 18 (77)
T PF01429_consen 9 PPLPDGWKRE 18 (77)
T ss_dssp TTSTTT-EEE
T ss_pred CCCCCCCEEE
Confidence 4455555433
No 99
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=27.91 E-value=1e+02 Score=33.01 Aligned_cols=43 Identities=37% Similarity=0.500 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHhhh---hcHHHHHHHHhhhc
Q psy3114 469 RLYKQELEDIVMRHE----AYRSALLCEMDRRLS---QSQQDARQIIESVD 512 (515)
Q Consensus 469 ~~~~~~~~~~v~~~e----~~r~~l~~~~~~~~~---~~~~~~~~~~~~~~ 512 (515)
.-+.+++.++...|+ .|.. |+.|++||+. .-+..++.+.+.++
T Consensus 328 ~~~~~~l~~L~~~Y~~F~~aY~~-LL~Ev~RRr~~~~k~~~i~~~~~eeL~ 377 (412)
T PF04108_consen 328 QAYIDELEQLCEFYEGFLSAYDS-LLLEVERRRAVRDKMKKIIREANEELD 377 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888 4555 9999999984 44455555555443
No 100
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=26.50 E-value=1.2e+02 Score=31.14 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=19.3
Q ss_pred cCCCeEEEcCCCCChhhHHHHHHHHHhcCCC
Q psy3114 108 YKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS 138 (515)
Q Consensus 108 ~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s 138 (515)
.+.+|+|+|.+| .|+. .++.+|.. .|++
T Consensus 170 kdk~IvvyC~~G-~Rs~-~aa~~L~~-~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGG-IRCE-KASAWMKH-EGFK 197 (314)
T ss_pred CcCeEEEECCCC-cHHH-HHHHHHHH-cCCC
Confidence 468999999999 5875 44555544 5553
No 101
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=24.93 E-value=98 Score=25.87 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=23.1
Q ss_pred EEEcCCCCChhhHHHHHHHHHhcCCCHHHHHHHHHHh
Q psy3114 113 AVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRIC 149 (515)
Q Consensus 113 lVHC~aGvgRSgt~iaayLm~~~~~s~~~Ai~~vR~~ 149 (515)
+.||.+ .|..|-++.. +|...+++..+|++++.+.
T Consensus 54 ~~~Cf~-Cg~~Gd~i~~-v~~~~~~~f~eAv~~l~~~ 88 (97)
T PF01807_consen 54 RFKCFG-CGKGGDVIDF-VMKYEGCSFKEAVKWLAEE 88 (97)
T ss_dssp EEEETT-T--EE-HHHH-HHHHHT--HHHHHHHHHHH
T ss_pred eEEECC-CCCCCcHHhH-HHHHhCCCHHHHHHHHHHH
Confidence 679994 6888977665 4666899999999998653
No 102
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=24.74 E-value=1.4e+02 Score=24.40 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=21.5
Q ss_pred HHHHHHHh--cCCCeEEEcCCCCChhhHHHHHHHHHhcCCC
Q psy3114 100 EFIKVCEK--YKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS 138 (515)
Q Consensus 100 ~fi~~~~~--~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s 138 (515)
.++..+.. .+.+|+|.|..| .||. .++.+|.. .|.+
T Consensus 47 ~~~~~~~~~~~~~~vv~~c~~g-~rs~-~~~~~l~~-~G~~ 84 (101)
T cd01528 47 ERSKELDSDNPDKDIVVLCHHG-GRSM-QVAQWLLR-QGFE 84 (101)
T ss_pred HHHHHhcccCCCCeEEEEeCCC-chHH-HHHHHHHH-cCCc
Confidence 44444433 478999999998 5764 33444443 4543
No 103
>PRK05320 rhodanese superfamily protein; Provisional
Probab=24.56 E-value=1.3e+02 Score=29.90 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=19.2
Q ss_pred cCCCeEEEcCCCCChhhHHHHHHHHHhcCCC
Q psy3114 108 YKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS 138 (515)
Q Consensus 108 ~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s 138 (515)
.+.+|+++|..| .||. .++.+|.. .|++
T Consensus 174 kdk~IvvyC~~G-~Rs~-~Aa~~L~~-~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGG-IRCE-KAAIHMQE-VGID 201 (257)
T ss_pred CCCeEEEECCCC-HHHH-HHHHHHHH-cCCc
Confidence 478999999999 4775 44555543 5553
No 104
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=23.10 E-value=1.1e+02 Score=27.98 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3114 472 KQELEDIVMRHEAYRSALLCEMDRRLS 498 (515)
Q Consensus 472 ~~~~~~~v~~~e~~r~~l~~~~~~~~~ 498 (515)
|||-...-.+=|-.|-+|+.|||+|-.
T Consensus 143 ~QEd~E~sAReeL~REELiEEIEQkVG 169 (180)
T PLN00180 143 RQEDIEESARAELWREELIEEIEQKVG 169 (180)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777778888899999999999864
No 105
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=22.40 E-value=94 Score=24.86 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=5.7
Q ss_pred CCCCCcEEEE
Q psy3114 324 PLPPGWSIDF 333 (515)
Q Consensus 324 ~LP~gWe~~~ 333 (515)
|||.||+...
T Consensus 5 Pl~~GW~Re~ 14 (73)
T cd01397 5 PLELGWRRET 14 (73)
T ss_pred CCCCCceeEE
Confidence 5666665444
No 106
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=21.95 E-value=1.1e+02 Score=26.61 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=19.0
Q ss_pred cCCCeEEEcCCCCChhhHHHHHHHHHhcCCC
Q psy3114 108 YKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS 138 (515)
Q Consensus 108 ~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s 138 (515)
.+.+|+|.|..|-.||..++ +++...|.+
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~--~~L~~~G~~ 113 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLA--WLLESLGID 113 (128)
T ss_pred CCCeEEEEeCCCCccHHHHH--HHHHHcCCc
Confidence 57899999975446776433 555555654
No 107
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=21.74 E-value=1.1e+02 Score=25.10 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=14.2
Q ss_pred CCCeEEEcCCCCChhhHHHH
Q psy3114 109 KGPIAVHCKAGLGRTGCLIG 128 (515)
Q Consensus 109 ~~pVlVHC~aGvgRSgt~ia 128 (515)
+.+|+|+|..|. ||+.++.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~ 83 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA 83 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH
Confidence 678999999985 7754433
No 108
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=21.53 E-value=93 Score=25.31 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=17.5
Q ss_pred hcCCCeEEEcCCCCChhhHHHHHHHHHhcCC
Q psy3114 107 KYKGPIAVHCKAGLGRTGCLIGAYMIKHYKM 137 (515)
Q Consensus 107 ~~~~pVlVHC~aGvgRSgt~iaayLm~~~~~ 137 (515)
..+.+|+|+|..| .|+. .++ .++...|.
T Consensus 59 ~~~~~ivv~c~~g-~~s~-~~~-~~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASG-WRSA-LAG-KTLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCC-CcHH-HHH-HHHHHcCh
Confidence 3578999999887 5764 333 33343443
No 109
>KOG1530|consensus
Probab=21.20 E-value=2.6e+02 Score=25.06 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=17.4
Q ss_pred HHHHHHHh----cCCCeEEEcCCCCChhhH
Q psy3114 100 EFIKVCEK----YKGPIAVHCKAGLGRTGC 125 (515)
Q Consensus 100 ~fi~~~~~----~~~pVlVHC~aGvgRSgt 125 (515)
+|.+.+.. ....|+|+|..|. ||..
T Consensus 76 eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 76 EFLKQVGSSKPPHDKEIIFGCASGV-RSLK 104 (136)
T ss_pred HHHHHhcccCCCCCCcEEEEeccCc-chhH
Confidence 55555443 3568999999994 8754
No 110
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=20.73 E-value=93 Score=31.11 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=20.4
Q ss_pred CCCCChhhHHHHHHHHHhcCCCHHHHHHH
Q psy3114 117 KAGLGRTGCLIGAYMIKHYKMSAMETIAW 145 (515)
Q Consensus 117 ~aGvgRSgt~iaayLm~~~~~s~~~Ai~~ 145 (515)
--|++|||+-+++-++. |++-++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~~--G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLLL--GLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHHC--CCCHHHHHHH
Confidence 46999999998887764 7776666554
No 111
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=20.63 E-value=98 Score=25.11 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=17.9
Q ss_pred cCCCeEEEcCCCCChhhHHHHHHHHHhcCCC
Q psy3114 108 YKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS 138 (515)
Q Consensus 108 ~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s 138 (515)
.+.+|+|+|..| .||.. ++..| ...|++
T Consensus 55 ~~~~iv~~c~~G-~rs~~-aa~~L-~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDG-VRADM-TASWL-AQMGWE 82 (95)
T ss_pred CCCeEEEECCCC-ChHHH-HHHHH-HHcCCE
Confidence 367899999998 47653 33444 445553
No 112
>PRK01415 hypothetical protein; Validated
Probab=20.47 E-value=1.9e+02 Score=28.66 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=19.1
Q ss_pred cCCCeEEEcCCCCChhhHHHHHHHHHhcCCC
Q psy3114 108 YKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS 138 (515)
Q Consensus 108 ~~~pVlVHC~aGvgRSgt~iaayLm~~~~~s 138 (515)
.+.+|+|+|.+| .||. .++.+|.. .|++
T Consensus 170 k~k~Iv~yCtgG-iRs~-kAa~~L~~-~Gf~ 197 (247)
T PRK01415 170 KGKKIAMVCTGG-IRCE-KSTSLLKS-IGYD 197 (247)
T ss_pred CCCeEEEECCCC-hHHH-HHHHHHHH-cCCC
Confidence 578999999999 4875 44455543 4553
No 113
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=20.30 E-value=95 Score=25.22 Aligned_cols=28 Identities=4% Similarity=-0.088 Sum_probs=18.0
Q ss_pred hcCCCeEEEcCCCCChhhHHHHHHHHHhcCC
Q psy3114 107 KYKGPIAVHCKAGLGRTGCLIGAYMIKHYKM 137 (515)
Q Consensus 107 ~~~~pVlVHC~aGvgRSgt~iaayLm~~~~~ 137 (515)
..+.+|+|+|..| +|+... +.+| ...|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~-~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA-AQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH-HHHH-HHcCC
Confidence 3578999999877 577543 4444 33454
No 114
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=20.09 E-value=3e+02 Score=22.29 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=15.0
Q ss_pred cCCCeEEEcCCCCChhhHHHHH
Q psy3114 108 YKGPIAVHCKAGLGRTGCLIGA 129 (515)
Q Consensus 108 ~~~pVlVHC~aGvgRSgt~iaa 129 (515)
.+..|+|+|..| .|++..+++
T Consensus 66 ~~~~iv~yc~~~-~~~~~~~~~ 86 (113)
T PF00581_consen 66 KDKDIVFYCSSG-WRSGSAAAA 86 (113)
T ss_dssp TTSEEEEEESSS-CHHHHHHHH
T ss_pred ccccceeeeecc-cccchhHHH
Confidence 467899999777 466665555
Done!