RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3114
(515 letters)
>gnl|CDD|185524 PTZ00242, PTZ00242, protein tyrosine phosphatase; Provisional.
Length = 166
Score = 71.2 bits (175), Expect = 1e-14
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 57 NGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGP----- 111
V +VR+ YD + G++ D+ F DG PP ++ ++++ ++
Sbjct: 39 YNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPP 98
Query: 112 --IAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKD 164
IAVHC AGLGR L+ ++++ M ++ + ++R R G + Q +LK
Sbjct: 99 ETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAINQTQLQFLKK 153
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 69.0 bits (169), Expect = 1e-13
Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 6/135 (4%)
Query: 53 LKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYK--- 109
V + L Y+ G+ + DGT P + L + + E+
Sbjct: 46 SLINALVIEELELLGALYNVAIEENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKG 105
Query: 110 GPIAVHCKAGLGRTGCLIGAY-MIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQHV 168
+ VHC+ G+GR+G +I AY M+ A E IA R RPG V+ Q
Sbjct: 106 KKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRPGAVVTEIQHLF--ELEQ 163
Query: 169 LQNVGDKYRSIRQRT 183
+ +
Sbjct: 164 ELFRKKELTAYESNK 178
>gnl|CDD|240399 PTZ00393, PTZ00393, protein tyrosine phosphatase; Provisional.
Length = 241
Score = 69.2 bits (169), Expect = 3e-13
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 44 ENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIK 103
+ + I +K N V +VR ++ Y++ + T AG++ + FPDG AP DI+ ++
Sbjct: 103 DLLPLYIKEMKNYN-VTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVDIVSNWLT 161
Query: 104 VCE---KYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQD 160
+ K +AVHC AGLGR L +I+ + M ++ I ++R R G + Q
Sbjct: 162 IVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAINKRQLQ 220
Query: 161 WLK 163
+LK
Sbjct: 221 FLK 223
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 61.9 bits (151), Expect = 1e-11
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 96 DILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPG 152
EFI + G + VHC+AG+ R+ LI AY++K +S E ++++ RP
Sbjct: 58 PEAVEFIDDAIQKGGKVLVHCQAGISRSATLIIAYLMKTRNLSLNEAYSFVKERRPI 114
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 59.6 bits (145), Expect = 8e-11
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 66 NQKNYDERKFTEAGLDHVDFYFPDGTAPPNDI--LCEFIKVCEKYKGPIAVHCKAGLGRT 123
NY+ FT G+ D T EFI+ E G + VHC+AG+ R+
Sbjct: 36 EVPNYNGSDFTYLGVPIDDN---TETKISPYFPEAVEFIEDAESKGGKVLVHCQAGVSRS 92
Query: 124 GCLIGAYMIKHYKMSAMETIAWMRICRPG 152
LI AY++K MS + +++ RP
Sbjct: 93 ATLIIAYLMKTRNMSLNDAYDFVKDRRPI 121
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 58.5 bits (142), Expect = 1e-09
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 88 PDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTGCLIGAY-----MIKHY 135
PD P P +L + I+ K + GPI VHC AG+GRTG I +
Sbjct: 141 PDHGVPESPKSLL-DLIRKVRKSQADPRSGPIVVHCSAGVGRTGTFIAIDILLQQLEAEG 199
Query: 136 KMSAMETIAWMRICRPGCV 154
++ + + +R RPG V
Sbjct: 200 EVDVFQIVKELRSQRPGMV 218
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 55.1 bits (133), Expect = 1e-09
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 88 PDGTAPPN-DILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIGAYMI------KH 134
PD P + D + E ++ +K GP+ VHC AG+GRTG + ++ +
Sbjct: 11 PDHGVPESPDSILELLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEA 70
Query: 135 YKMSAMETIAWMRICRPGCV 154
++ +T+ +R RPG V
Sbjct: 71 GEVDIFDTVKELRSQRPGMV 90
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 55.1 bits (133), Expect = 1e-09
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 88 PDGTAPPN-DILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIGAYMI------KH 134
PD P + D + E ++ +K GP+ VHC AG+GRTG + ++ +
Sbjct: 11 PDHGVPESPDSILELLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEA 70
Query: 135 YKMSAMETIAWMRICRPGCV 154
++ +T+ +R RPG V
Sbjct: 71 GEVDIFDTVKELRSQRPGMV 90
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 56.5 bits (137), Expect = 7e-09
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 88 PDGTAP--PNDILCEFIKVCEKYK----GPIAVHCKAGLGRTGCLIGAY-----MIKHYK 136
PD P P IL + I+ K + GPI VHC AG+GRTG I + +
Sbjct: 168 PDHGVPESPESIL-DLIRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKE 226
Query: 137 MSAMETIAWMRICRPGCV 154
+ E + +R RPG V
Sbjct: 227 VDIFEIVKELRSQRPGMV 244
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the
WWP or rsp5 domain; around 40 amino acids; functions as
an interaction module in a diverse set of signalling
proteins; binds specific proline-rich sequences but at
low affinities compared to other peptide recognition
proteins such as antibodies and receptors; WW domains
have a single groove formed by a conserved Trp and Tyr
which recognizes a pair of residues of the sequence
X-Pro; variable loops and neighboring domains confer
specificity in this domain; there are five distinct
groups based on binding: 1) PPXY motifs 2) the PPLP
motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR
motifs.
Length = 31
Score = 49.1 bits (118), Expect = 3e-08
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 326 PPGWSIDFTLRGRKYYIDHNTKTTHWSHPLE 356
PPGW + GR YY +HNTK T W P E
Sbjct: 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPRE 31
Score = 43.7 bits (104), Expect = 3e-06
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 361 PTGWERIENPEYGVYFVNHITRQAQYEHPC 390
P GWE +P+ VY+ NH T++ Q+E P
Sbjct: 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30
>gnl|CDD|215899 pfam00397, WW, WW domain. The WW domain is a protein module with
two highly conserved tryptophans that binds proline-rich
peptide motifs in vitro.
Length = 30
Score = 47.2 bits (113), Expect = 1e-07
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
LPPGW GR YY +HNT T W P
Sbjct: 1 LPPGWEERTDTDGRPYYYNHNTGETQWERP 30
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE + + Y+ NH T + Q+E P
Sbjct: 1 LPPGWEERTDTDGRPYYYNHNTGETQWERP 30
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues. Also
known as the WWP or rsp5 domain. Binds proline-rich
polypeptides.
Length = 33
Score = 47.2 bits (113), Expect = 1e-07
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLPPGW GR YY +H TK T W P
Sbjct: 1 PLPPGWEERKDPDGRPYYYNHETKETQWEKP 31
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 359 GLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE ++P+ Y+ NH T++ Q+E P
Sbjct: 1 PLPPGWEERKDPDGRPYYYNHETKETQWEKP 31
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 49.9 bits (120), Expect = 8e-07
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 88 PDGTAP--PNDILCEFIKVCEKY-----KGPIAVHCKAGLGRTGCLIGAYMI-----KHY 135
PD P P+ +L + ++ K GPI VHC AG+GRTG I ++
Sbjct: 139 PDHGVPESPDSLL-DLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEG 197
Query: 136 KMSAMETIAWMRICRPGCV 154
+ +T+ +R RPG V
Sbjct: 198 VVDIFQTVKELRSQRPGMV 216
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 47.2 bits (113), Expect = 2e-06
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 100 EFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
+FI + G + VHC AG+ R+ L+ AY++K +S E +++ RP
Sbjct: 72 DFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRP 123
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 39.1 bits (91), Expect = 0.004
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 58 GVQLVVRLNQKNYDERKF--TEAGLDHVD--------FYFP---DGTAPPNDILCEFIKV 104
G++++ + + +++ L ++ F + D P L E I
Sbjct: 151 GLRVIKQKKYELFNDNIVNVHNFELTSINGPPKKIHHFQYINWVDFNVPDIRSLTEVIHS 210
Query: 105 CEKYK---GPIAVHCKAGLGRTGCLIGAYMIKH 134
GPI VHC AG+GRTG I ++
Sbjct: 211 LNDSPVRTGPIIVHCSAGVGRTGTFIALDILLR 243
>gnl|CDD|222923 PHA02738, PHA02738, hypothetical protein; Provisional.
Length = 320
Score = 35.3 bits (81), Expect = 0.065
Identities = 12/15 (80%), Positives = 12/15 (80%)
Query: 111 PIAVHCKAGLGRTGC 125
PI VHC AGLGRT C
Sbjct: 229 PIVVHCNAGLGRTPC 243
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 34.0 bits (78), Expect = 0.24
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 323 LPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKE 358
L L +S GR YY+DH+ T +S PL +E
Sbjct: 297 LRLNSLFSTRADSFGRTYYLDHDRILTQYSRPLLEE 332
Score = 32.8 bits (75), Expect = 0.57
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 26/103 (25%)
Query: 325 LPPGWSIDFTLRGRKYYIDHNTKTTHWSHPL------------------------EKEGL 360
P GWS G+ + D T ++ + + L
Sbjct: 388 KPTGWSSSIEDLGQFLFSDFLTSSSTYEDLRREQLGRESDESFYVASNVQQQRASREGPL 447
Query: 361 PTGWE-RIENPEYGVYFVNHITRQAQYEHPCAPHYIYQPEVRI 402
+GW+ R+ N Y YFV H + +I ++ I
Sbjct: 448 LSGWKTRLNN-LYRFYFVEHRKKTLTKNDSRLGSFISLNKLDI 489
>gnl|CDD|165113 PHA02746, PHA02746, protein tyrosine phosphatase; Provisional.
Length = 323
Score = 32.3 bits (73), Expect = 0.58
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 20/74 (27%)
Query: 74 KFTEAGLDHVDFYF---PDGTAP--PNDILCEFIKVCEKYK-------------GPIAVH 115
K ++ + F+F PD P + L KV E+ GPI VH
Sbjct: 194 KISDTSREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVH 253
Query: 116 CKAGLGRTG--CLI 127
C AG+GR G C I
Sbjct: 254 CSAGIGRAGTFCAI 267
>gnl|CDD|111998 pfam03162, Y_phosphatase2, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 150
Score = 29.3 bits (66), Expect = 2.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 111 PIAVHCKAGLGRTGCLIGA 129
P+ +HC G RTG +IG
Sbjct: 93 PVLIHCNRGKHRTGLVIGC 111
>gnl|CDD|225240 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
transduction mechanisms].
Length = 249
Score = 29.7 bits (67), Expect = 2.9
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 49 KIHHLK---CPNGVQLVVRLNQKNYDERKFTEAGLDHVDFY-FPDGTAPPNDILCEFIKV 104
+LK ++ A + + FP ++ +
Sbjct: 72 DALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLL 131
Query: 105 CEKYKGPIAVHCKAGLGRTGCLIGAY 130
+ GP+ +HC AG RTG + Y
Sbjct: 132 ADAENGPVLIHCTAGKDRTGLVAALY 157
>gnl|CDD|219631 pfam07902, Gp58, gp58-like protein. Sequences found in this family
are derived from a number of bacteriophage and prophage
proteins. They are similar to gp58, a minor structural
protein of Lactococcus delbrueckii bacteriophage LL-H.
Length = 601
Score = 30.3 bits (68), Expect = 3.2
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 150 RPGCVIGVQQDWLKDVQHVLQNVGDKYRSIRQRTTNIQR 188
R G V VQQ L Q LQ+ D Y S+ Q +Q
Sbjct: 266 REGAVSRVQQT-LDSYQRRLQDAEDNYSSLTQTVAGLQS 303
>gnl|CDD|233517 TIGR01662, HAD-SF-IIIA, HAD-superfamily hydrolase, subfamily IIIA.
This subfamily falls within the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolases.
The Class III subfamilies are characterized by the lack
of any domains located between either between the first
and second conserved catalytic motifs (as in the Class I
subfamilies, TIGR01493, TIGR01509, TIGR01488 and
TIGR01494) or between the second and third conserved
catalytic motifs (as in the Class II subfamilies,
TIGR01460 and TIGR01484) of the superfamily domain. The
IIIA subfamily contains five major clades:
histidinol-phosphatase (TIGR01261) and
histidinol-phosphatase-related protein (TIGR00213) which
together form a subfamily (TIGR01656), DNA
3'-phosphatase (TIGR01663, TIGR01664), YqeG (TIGR01668)
and YrbI (TIGR01670). In the case of histidinol
phosphatase and PNK-3'-phosphatase, this model
represents a domain of a bifunctional system. In the
histidinol phosphatase HisB, a C-terminal domain is an
imidazoleglycerol-phosphate dehydratase which catalyzes
a related step in histidine biosynthesis. In
PNK-3'-phosphatase, N- and C-terminal domains constitute
the polynucleotide kinase and DNA-binding components of
the enzyme [Unknown function, Enzymes of unknown
specificity].
Length = 132
Score = 28.5 bits (64), Expect = 3.7
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 23/125 (18%)
Query: 19 KLLAFSGPNT-TEQNTCYHPP-EKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFT 76
K + T T+ E+ + + LK G ++V+ NQ KF+
Sbjct: 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELK-EAGYKVVIVTNQSGIGRGKFS 59
Query: 77 EAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYK 136
+ + + + C + P K G+ +K +
Sbjct: 60 SGRVARR--------LEELGVPIDILYACPHCRKP-----KPGMFL-------EALKRFN 99
Query: 137 MSAME 141
E
Sbjct: 100 EIDPE 104
>gnl|CDD|216250 pfam01026, TatD_DNase, TatD related DNase. This family of proteins
are related to a large superfamily of metalloenzymes.
TatD, a member of this family has been shown
experimentally to be a DNase enzyme.
Length = 255
Score = 29.6 bits (67), Expect = 3.7
Identities = 7/41 (17%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 77 EAGLDHVDFYFPDGTAPP-NDILCEFIKVCEKYKGPIAVHC 116
E GLD+ +Y + ++ +++ ++ P+ +H
Sbjct: 93 EIGLDY--YYVDESPKEAQEEVFRRQLELAKELDLPVVIHT 131
>gnl|CDD|223829 COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [DNA replication, recombination,
and repair / Intracellular trafficking and secretion].
Length = 350
Score = 29.2 bits (66), Expect = 5.4
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 23/110 (20%)
Query: 137 MSAMETIAWMRICRPGCVIGVQ-----------QDWLKDVQHVLQNVGDKYRSIRQRTTN 185
MS E +AW+++ + + + LK L+ G R +
Sbjct: 1 MSDRERLAWLKLSSTNNLGPLNLLLLLKHFGNKESILKIPLPQLEIEGLSSRRLLAELAR 60
Query: 186 IQRHPYGIYSKKWKAKQALDT-RSPGMGALTPNKENSPVRGRGVHTAPAI 234
I+ + L+ PG+ +T E+ P + ++ P +
Sbjct: 61 IE-----------LLELELEKIEKPGIKIITLGDEDYPKLLKEINDPPPV 99
>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification].
Length = 590
Score = 28.9 bits (64), Expect = 7.1
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 329 WSIDFTLRGRKYYIDHNTKTTHWSHPL------EKEGLPTGWERIENPEYGVYFVNHITR 382
W GR YY + T + W P E++ W+ + VY+ N ITR
Sbjct: 17 WEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITR 76
Query: 383 QAQYEHP 389
+++++ P
Sbjct: 77 ESRWKIP 83
Score = 28.9 bits (64), Expect = 8.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 314 QQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKE 358
++L + S+E W T G+ YY + T+ + W P E++
Sbjct: 43 KELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERK 87
>gnl|CDD|203311 pfam05706, CDKN3, Cyclin-dependent kinase inhibitor 3 (CDKN3).
This family consists of cyclin-dependent kinase
inhibitor 3 or kinase associated phosphatase proteins
from several mammalian species. The cyclin-dependent
kinase (Cdk)-associated protein phosphatase (KAP) is a
human dual specificity protein phosphatase that
dephosphorylates Cdk2 on threonine 160 in a
cyclin-dependent manner.
Length = 168
Score = 28.1 bits (62), Expect = 8.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 88 PDGTAPPNDILCEFIK---VCEKYKGPIAVHCKAGLGRTGCLIGAYMI 132
DG P CE ++ C K +HC GLGR+ CL+ A ++
Sbjct: 109 ADGGTPDIASCCEIMEELTTCLKNYRKTLIHCYGGLGRS-CLVAACLL 155
>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
family. This family consists of several eukaryotic
Organic-Anion-Transporting Polypeptides (OATPs). Several
have been identified mostly in human and rat. Different
OATPs vary in tissue distribution and substrate
specificity. Since the numbering of different OATPs in
particular species was based originally on the order of
discovery, similarly numbered OATPs in humans and rats
did not necessarily correspond in function, tissue
distribution and substrate specificity (in spite of the
name, some OATPs also transport organic cations and
neutral molecules). Thus, Tamai et al. initiated the
current scheme of using digits for rat OATPs and letters
for human ones. Prostaglandin transporter (PGT) proteins
are also considered to be OATP family members. In
addition, the methotrexate transporter OATK is closely
related to OATPs. This family also includes several
predicted proteins from Caenorhabditis elegans and
Drosophila melanogaster. This similarity was not
previously noted. Note: Members of this family are
described (in the Swiss-Prot database) as belonging to
the SLC21 family of transporters.
Length = 582
Score = 28.8 bits (65), Expect = 9.0
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 123 TGCLIGAYMIKHYKMSAMETIAWMRIC 149
G L+G +IK +K++A +
Sbjct: 355 VGILLGGLIIKKFKLTARGMAKFAIFV 381
>gnl|CDD|222063 pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 163
Score = 27.9 bits (63), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 110 GPIAVHCKAGLGRTGCLIGAYMI 132
GP+ HC AG RTG + A ++
Sbjct: 124 GPVLFHCTAGKDRTG--VAAALL 144
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.438
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,026,710
Number of extensions: 2596680
Number of successful extensions: 2151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2144
Number of HSP's successfully gapped: 47
Length of query: 515
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 414
Effective length of database: 6,457,848
Effective search space: 2673549072
Effective search space used: 2673549072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)