RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3114
(515 letters)
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 161 bits (409), Expect = 2e-45
Identities = 78/177 (44%), Positives = 114/177 (64%), Gaps = 6/177 (3%)
Query: 2 EKYERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQL 61
E YE+ + GD++WI+P++ +AF GP++ + E + ++ + V
Sbjct: 168 EHYEKAENGDLNWIIPDRFIAFCGPHSRARL------ESGYHQHSPETYIQYFKNHNVTT 221
Query: 62 VVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLG 121
++RLN++ YD ++FT+AG DH D +F DG+ P + I+ EF+ +CE +G IAVH KAGLG
Sbjct: 222 IIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGAIAVHSKAGLG 281
Query: 122 RTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQHVLQNVGDKYRS 178
RTG LI Y++KHY+M+A ETIAW+RICRPG VIG QQ +L Q L GD +R
Sbjct: 282 RTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQFLVMKQTNLWLEGDYFRQ 338
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 149 bits (377), Expect = 5e-43
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 23/158 (14%)
Query: 5 ERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVR 64
+Q + SW++P +L + P L GV+ +V
Sbjct: 2 LGVQPPNFSWVLPGRLAGLALPRLPAH------------------YQFLL-DLGVRHLVS 42
Query: 65 LNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY---KGPIAVHCKAGLG 121
L ++ + GL PD P D + F+++ ++ + VHC G G
Sbjct: 43 LTERGPPHS-DSCPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFG 101
Query: 122 RTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQ 159
RTG ++ Y++K ++A + IA +R RPG + +Q
Sbjct: 102 RTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQ 139
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 139 bits (353), Expect = 2e-39
Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 30/170 (17%)
Query: 12 ISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLN----- 66
+ W+ + P T + I + GV+ V+ L
Sbjct: 1 MYWVRRKTIGGSGLPYTENE------------------ILEWR-KEGVKRVLVLPEDWEI 41
Query: 67 -----QKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLG 121
K+Y + GL + PDG P + +K K VHC G+G
Sbjct: 42 EESWGDKDYYLSILKKNGLQPLHIPIPDGGVPSDSQFLTIMKWLLSEKEGNLVHCVGGIG 101
Query: 122 RTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQ-DWLKDVQHVLQ 170
RTG ++ +Y+I + I +R+ RPG V +Q +L V+ + +
Sbjct: 102 RTGTILASYLILTEGLEVESAIDEVRLVRPGAVQTYEQEMFLLRVEGMRK 151
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa, MSGPP,
unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Length = 167
Score = 137 bits (345), Expect = 2e-38
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 13/163 (7%)
Query: 16 VPNKLLAFSGPN-TTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERK 74
+ L+ P + + + N+ I L+ GV+ +VR+ YD
Sbjct: 5 MNATLIDCCDPQKPSRVLFHFLILDAPSPSNLPTYIKELQ-HRGVRHLVRVCGPTYDATL 63
Query: 75 FTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGP-----------IAVHCKAGLGRT 123
G+D + F DG P +L ++K+ + I VHC AGLGR
Sbjct: 64 VKSRGIDVHSWPFDDGAPPTRAVLDSWLKLLDTELARQQEDPSVPPPTIGVHCVAGLGRA 123
Query: 124 GCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQ 166
L+ ++++ +SA++ IA +R R G + Q W+ +
Sbjct: 124 PILVALALVEYGNVSALDAIALIREKRKGAINQTQMHWITKYK 166
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 123 bits (310), Expect = 2e-33
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 14/157 (8%)
Query: 15 IVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLN--QKNYDE 72
I + L+ F P E E W+ K + + ++ L K YD
Sbjct: 17 IKDSNLICFKTPLRPELFAYVTSEEDVWTAEQIVKQNP-----SIGAIIDLTNTSKYYDG 71
Query: 73 RKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY-----KGPIAVHCKAGLGRTGCLI 127
F AGL + P T PP I+ EFI +++ + VHC G+ RTG ++
Sbjct: 72 VHFLRAGLLYKKIQVPGQTLPPESIVQEFIDTVKEFTEKCPGMLVGVHCTHGINRTGYMV 131
Query: 128 GAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKD 164
Y++ ++ E I R + +Q++++D
Sbjct: 132 CRYLMHTLGIAPQEAIDRFEKARGHKIE--RQNYVQD 166
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine
phosphatase IVA1...; structural genomics, NYSGXRC,
unknown function, PSI; 1.90A {Homo sapiens} SCOP:
c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Length = 159
Score = 119 bits (300), Expect = 4e-32
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 42 WSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEF 101
+ +++ I LK GV +VR+ + YD + G+ +D+ F DG P N I+ ++
Sbjct: 25 TNATLNKFIEELK-KYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDW 83
Query: 102 IKVCEKY-----KGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIG 156
+ + + IAVHC AGLGR L+ +I+ M + + ++R R G
Sbjct: 84 LSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEG-GMKYEDAVQFIRQKRRGAFNS 142
Query: 157 VQQDWLKDVQHVLQN 171
Q +L+ + ++
Sbjct: 143 KQLLYLEKYRPKMRL 157
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual
specific phosphatase, COMP with peptide, hydrolase;
2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Length = 189
Score = 114 bits (287), Expect = 7e-30
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 42 WSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEF 101
+ +++ I LK GV +VR+ + YD + G+ +D+ F DG P N I+ ++
Sbjct: 46 TNATLNKFIEELK-KYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDW 104
Query: 102 IKVCEKY-----KGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIG 156
+ + + IAVHC AGLGR L+ +I+ M + + ++R R G
Sbjct: 105 LSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEG-GMKYEDAVQFIRQKRRGAFNS 163
Query: 157 VQQDWLKDVQHVLQN 171
Q +L+ + ++
Sbjct: 164 KQLLYLEKYRPKMRL 178
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 113 bits (283), Expect = 8e-29
Identities = 33/156 (21%), Positives = 56/156 (35%), Gaps = 10/156 (6%)
Query: 12 ISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRLN--QKN 69
V + L ++ + +S + LK G L+V L +
Sbjct: 38 RGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMG--LLVDLTNTSRF 95
Query: 70 YDERKFTEAGLDHVDFYFPD-GTAPPNDILCEFIKVCEKY-----KGPIAVHCKAGLGRT 123
YD + G+ ++ G P + FI++CE++ I VHC G RT
Sbjct: 96 YDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRT 155
Query: 124 GCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQ 159
G LI A++++ S +A RP +
Sbjct: 156 GFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDY 191
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 102 bits (254), Expect = 3e-24
Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 21/200 (10%)
Query: 4 YERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVV 63
E D+++I PN ++A P + Y + + K N ++
Sbjct: 11 QEDGFDLDLTYIYPN-IIAMGFPAERLEGV-YRNNIDD-----VVRFLDSKHKNHYKIYN 63
Query: 64 RLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY-----KGPIAVHCKA 118
+++YD KF + F D P +++ F + +++ A+HCKA
Sbjct: 64 LCAERHYDTAKF---NCRVAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKA 120
Query: 119 GLGRTGCLIGAYMIKHYK-MSAMETIAWMRICRPGCVIGV----QQDWLKDVQHVLQNVG 173
G GRTG +I AY++ K + A E + + R GV Q+ ++ ++L+N
Sbjct: 121 GKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYYYSYLLKNHL 180
Query: 174 DKY-RSIRQRTTNIQRHPYG 192
D ++ + P
Sbjct: 181 DYRPVALLFHKMMFETIPMF 200
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila
melanogaster} SCOP: b.72.1.1 b.72.1.1
Length = 88
Score = 95.3 bits (237), Expect = 4e-24
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 314 QQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP---------LEKEGLPTGW 364
PLP GW R Y+++H +TT W P + + LP GW
Sbjct: 2 SPEFHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGW 61
Query: 365 ERIENPEYGVYFVNHITRQAQYEHP 389
E +FV+H TR+ +E P
Sbjct: 62 EIRYTAAGERFFVDHNTRRTTFEDP 86
Score = 54.1 bits (130), Expect = 1e-09
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 312 PSQQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
Q +E PLPPGW I +T G ++++DHNT+ T + P
Sbjct: 44 TQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 86
Score = 44.1 bits (104), Expect = 4e-06
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHPCAPHYIYQPEVRIALAP 406
LP GWE+ + VYFVNH R Q+E P L P
Sbjct: 13 LPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPP 59
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular
binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A*
2laz_A*
Length = 90
Score = 94.2 bits (234), Expect = 1e-23
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP-----------LEKEGLPTGWERI 367
LP G+ T +G+ Y++ T + W P E LP GWE
Sbjct: 4 GGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIR 63
Query: 368 ENPEYGVYFVNHITRQAQYEHPCAP 392
VYFV+H R Q+ P
Sbjct: 64 NTATGRVYFVDHNNRTTQFTDPRLS 88
Score = 54.9 bits (132), Expect = 7e-10
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 310 CHPSQQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+ PLPPGW I T GR Y++DHN +TT ++ P
Sbjct: 41 VPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 85
Score = 43.7 bits (103), Expect = 7e-06
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 358 EGLPTGWERIENPEYGVYFVNHITRQAQYEHPCAPHYIYQPEVRIALAPPP 408
LP G+E+ + VYF++ T + + P P + PP
Sbjct: 8 PDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPP 58
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 49
Score = 86.1 bits (213), Expect = 3e-21
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 348 TTHWSHPLEKEGLPTGWERIENPEYGVYFVNHITRQAQYEHPCAPHY 394
++ S PLE+EGLP GWER+E+ E+G Y+V+H ++AQY HP P
Sbjct: 2 SSGSSGPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGPSS 48
Score = 46.0 bits (109), Expect = 4e-07
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 321 DELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+ LPPGW + YY+DH K + HP
Sbjct: 10 EREGLPPGWERVESSEFGTYYVDHTNKRAQYRHP 43
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 89.7 bits (222), Expect = 1e-20
Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 23/180 (12%)
Query: 6 RIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRL 65
I + +S + ++ L K+ N+ + LK G+Q +
Sbjct: 28 HISWLSLSRVNCSQFLGLCA--------LPGCKFKDVRRNVQKDTEELKS-CGIQDIFVF 78
Query: 66 NQKN--------YDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY---KGPIAV 114
+ + + G+ DG P CE ++ +
Sbjct: 79 CTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKTLI 138
Query: 115 HCKAGLGRTGCLIGAYMIK-HYKMSAMETIAWMRICR-PGCVIGVQQ-DWLKDVQHVLQN 171
H GLGR+ + ++ +S + I +R R G + ++Q ++L + + L
Sbjct: 139 HSYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIKQYNYLHEFRDKLAA 198
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 84.6 bits (208), Expect = 5e-18
Identities = 29/192 (15%), Positives = 53/192 (27%), Gaps = 21/192 (10%)
Query: 1 MEKYERIQFG--DISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHL-KCPN 57
++ G D +++ ++ S P + + + + L
Sbjct: 11 IQSVTSYTKGDLDFTYVTSR-IIVMSFPLDS--------VDIGFRNQVDDIRSFLDSRHL 61
Query: 58 GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY-----KGPI 112
V L+ K+Y KF + +P AP L + + K
Sbjct: 62 DHYTVYNLSPKSYRTAKF---HSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVC 118
Query: 113 AVHCKAGLGRTGCLIGAYMIKHYK-MSAMETIAWMRICRPGCVIGVQQDWLKDVQHVLQN 171
VHC G + L+GA I + + + RPG + L
Sbjct: 119 VVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLA 178
Query: 172 VGDKYRSIRQRT 183
+ T
Sbjct: 179 DKPYRPHFKPLT 190
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 77.4 bits (191), Expect = 5e-17
Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 10/127 (7%)
Query: 43 SENMSRKIHHLKCPNGVQLVVRLNQKNY------DERKFTEAGLDHVDFYFPDGTAPPN- 95
+ + L V+ V+ +N++ +++ +AG++ + D T P
Sbjct: 13 ALPLKNMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTL 72
Query: 96 ---DILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPG 152
+F + + VHCKAG R+ ++ AY+I+ + S E I + R
Sbjct: 73 ANLHKGVQFALKYQALGQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSH 132
Query: 153 CVIGVQQ 159
I Q
Sbjct: 133 ISIRPSQ 139
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: k.22.1.1
Length = 49
Score = 73.5 bits (181), Expect = 7e-17
Identities = 32/46 (69%), Positives = 39/46 (84%), Gaps = 1/46 (2%)
Query: 318 EASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKEGLPTG 363
+ ++LPLPPGWS+D+T+RGRKYYIDHNT TTHWSHPLE G +G
Sbjct: 5 SSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLE-SGPSSG 49
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain,
solution, complex, ligase/signaling protein complex; NMR
{Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Length = 53
Score = 71.3 bits (175), Expect = 4e-16
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 311 HPSQQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
P + +E PLPPGW I +T G ++++DHNT+ T + P
Sbjct: 5 SPEFHMVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 48
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 77.8 bits (190), Expect = 8e-16
Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Query: 4 YERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVV 63
+ D++++ + ++A S P++ Q+ +P + K P+ ++
Sbjct: 19 RKDGFDLDLTYVTDH-VIAMSFPSSGRQSLFRNPIG------EVSRFFKTKHPDKFRIYN 71
Query: 64 RLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY-----KGPIAVHCKA 118
+++ YDE KF D P L +FI + + IA+H K
Sbjct: 72 LCSERGYDETKFDN---HVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKG 128
Query: 119 GLGRTGCLIGAYMIKHYKM-SAMETIAWMRICRPGCVIGVQQDWLKDVQHVLQ 170
G GRTG L+ +++++ K +A E + + R +G ++ +
Sbjct: 129 GKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRY 181
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling
protein-TRAN complex; NMR {Homo sapiens}
Length = 38
Score = 68.7 bits (169), Expect = 3e-15
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+ E PLP GW T G YYI+H KTT W P
Sbjct: 1 GAMEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDP 36
Score = 46.8 bits (112), Expect = 1e-07
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE+ + +Y++NH + + P
Sbjct: 7 LPDGWEQAMTQDGEIYYINHKNKTTSWLDP 36
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65
mutant, structural protein; NMR {Homo sapiens} SCOP:
b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Length = 46
Score = 68.4 bits (168), Expect = 3e-15
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 318 EASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
E D++PLP GW + T G++Y+ +H +TT W P
Sbjct: 2 EIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDP 38
Score = 44.2 bits (105), Expect = 1e-06
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 351 WSHPLEKEGLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
+ P + LP GWE + YF NHI + ++ P
Sbjct: 1 FEIP-DDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDP 38
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif,
liddle syndrome, proline-rich, ligase; NMR {Rattus
norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Length = 50
Score = 68.8 bits (169), Expect = 3e-15
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 318 EASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+++D PLPPGW GR ++I+HN K T W P
Sbjct: 5 DSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDP 41
Score = 46.5 bits (111), Expect = 2e-07
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE + + V+F+NH ++ Q+E P
Sbjct: 12 LPPGWEERTHTDGRVFFINHNIKKTQWEDP 41
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 68.0 bits (167), Expect = 5e-15
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+S LP GW + FT+ G Y++DHN +TT + P
Sbjct: 2 SSGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDP 37
Score = 46.8 bits (112), Expect = 1e-07
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 356 EKEGLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
GLP GWE + YFV+H R Y P
Sbjct: 4 GSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDP 37
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif,
binding affinity, signalling protein,ligase; NMR
{Drosophila melanogaster}
Length = 46
Score = 67.7 bits (166), Expect = 8e-15
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+ +E PLPP WS+ GR ++IDH ++ T W P
Sbjct: 5 SGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDP 40
Score = 46.9 bits (112), Expect = 1e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 356 EKEGLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
E+E LP W P +F++H +R+ + P
Sbjct: 7 EEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDP 40
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo
sapiens}
Length = 49
Score = 67.4 bits (165), Expect = 8e-15
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 345 NTKTTHWSHPLEKEGLPTGWERIENPEYGVYFVNHITRQAQYEHPCAP 392
++ ++ LE LP GWE+IE+P YG+Y+V+HI R+ QYE+P P
Sbjct: 2 SSGSSGLDSELE---LPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP 46
Score = 54.3 bits (131), Expect = 4e-10
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 321 DELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
EL LP GW YY+DH + T + +P
Sbjct: 10 SELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Length = 57
Score = 67.8 bits (166), Expect = 8e-15
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 312 PSQQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
S + PLP W + +T G Y+IDHNTKTT W P
Sbjct: 2 SSGSSGAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDP 44
Score = 46.6 bits (111), Expect = 3e-07
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP WE VYF++H T+ + P
Sbjct: 15 LPENWEMAYTENGEVYFIDHNTKTTSWLDP 44
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 66.9 bits (164), Expect = 1e-14
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+S LP GW +T G KY+I+H T+TT W HP
Sbjct: 2 SSGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHP 37
Score = 45.7 bits (109), Expect = 4e-07
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE + YF+NH+T+ + HP
Sbjct: 8 LPYGWEEAYTADGIKYFINHVTQTTSWIHP 37
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Length = 41
Score = 66.8 bits (164), Expect = 1e-14
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+ LPPGW + GR ++IDHNTKTT W P
Sbjct: 3 PGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDP 38
Score = 48.3 bits (116), Expect = 4e-08
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 354 PLEKEGLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
P + LP GWE P +F++H T+ +E P
Sbjct: 3 PGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDP 38
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription;
NMR {Oryzias latipes}
Length = 46
Score = 66.5 bits (163), Expect = 2e-14
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 318 EASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+ PLP GW T G YYI+H KTT W P
Sbjct: 5 SSPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDP 41
Score = 46.5 bits (111), Expect = 2e-07
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE+ PE +Y++NH + + P
Sbjct: 12 LPEGWEQAITPEGEIYYINHKNKTTSWLDP 41
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three
stranded antiparallel beta sheet, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 66.1 bits (162), Expect = 3e-14
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+S LPPGW GR YY+DH K T W P
Sbjct: 2 SSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRP 37
Score = 50.7 bits (122), Expect = 7e-09
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 358 EGLPTGWERIENPEYGVYFVNHITRQAQYEHPCAP 392
GLP GWE+ + VY+V+H+ ++ ++ P P
Sbjct: 6 SGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear
protein, mRNA splicing, ribonucleoprotein; NMR
{Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Length = 75
Score = 66.8 bits (163), Expect = 3e-14
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 328 GWSIDFTLRGRKYYIDHNTKTTHWSHPLEKEG------LPTGWERIENPEYGVYFVNHIT 381
W GR YY + TK + W P E GW+ + + VY+ N T
Sbjct: 3 IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTT 62
Query: 382 RQAQYEHP 389
R+ + P
Sbjct: 63 RETSWTIP 70
Score = 43.7 bits (103), Expect = 5e-06
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 314 QQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
++L + L GW T G+ YY + T+ T W+ P
Sbjct: 30 KELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIP 70
Score = 32.2 bits (73), Expect = 0.051
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 362 TGWERIENPEYGVYFVNHITRQAQYEHP 389
+ W+ ++ +Y+ N +T+++ +E P
Sbjct: 2 SIWKEAKDASGRIYYYNTLTKKSTWEKP 29
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human
modular domain, complex, HOST interaction, ligase; NMR
{Homo sapiens} PDB: 2kq0_A 2laj_A*
Length = 49
Score = 65.4 bits (160), Expect = 5e-14
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 318 EASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
++ LP GW + GR ++IDHNTKTT W P
Sbjct: 6 SEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDP 42
Score = 48.1 bits (115), Expect = 5e-08
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 352 SHPLEKEGLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
+E+ LP GWE P +F++H T+ +E P
Sbjct: 5 PSEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDP 42
>1ymz_A CC45; artificial protein, computational design, unknown function;
NMR {Synthetic} SCOP: k.22.1.1
Length = 43
Score = 64.5 bits (158), Expect = 7e-14
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 320 SDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+PLPPGW + G+ YY + T TT W P
Sbjct: 4 GRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERP 38
Score = 47.2 bits (113), Expect = 1e-07
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWER + E VY+ N T +E P
Sbjct: 9 LPPGWERRTDVEGKVYYFNVRTLTTTWERP 38
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI-1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 60
Score = 64.9 bits (158), Expect = 1e-13
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 345 NTKTTHWSHPLEKEGLPTGWERIENPEYGVYFVNHITRQAQYEHPCAP 392
++ ++ LE LP GWE+IE+P YG+Y+V+HI R+ QYE+P
Sbjct: 2 SSGSSGLDSELE---LPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE 46
Score = 53.0 bits (127), Expect = 1e-09
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 320 SDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
EL LP GW YY+DH + T + +P
Sbjct: 9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW
domain; NMR {Homo sapiens}
Length = 39
Score = 64.1 bits (157), Expect = 1e-13
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLPPGW GR YY+DH T+TT W P
Sbjct: 6 PLPPGWERRVDNMGRIYYVDHFTRTTTWQRP 36
Score = 47.9 bits (115), Expect = 5e-08
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWER + +Y+V+H TR ++ P
Sbjct: 7 LPPGWERRVDNMGRIYYVDHFTRTTTWQRP 36
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Length = 36
Score = 64.0 bits (157), Expect = 1e-13
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 322 ELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLPPGW GR YY++HN ++T W P
Sbjct: 2 SPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 34
Score = 47.1 bits (113), Expect = 1e-07
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE + Y+VNH R Q+ P
Sbjct: 5 LPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 34
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB:
2lb2_A*
Length = 36
Score = 63.3 bits (155), Expect = 2e-13
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPL 355
LP GW +GR YY++HN +TT W+ P+
Sbjct: 4 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35
Score = 47.9 bits (115), Expect = 5e-08
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP+GWE ++ + Y+VNH R + P
Sbjct: 5 LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein
tyrosine phosphatase, inositol phosphate, I phosphatase;
HET: IHP; 1.60A {Selenomonas ruminantium} PDB: 1u24_A
1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A
3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Length = 314
Score = 70.2 bits (171), Expect = 2e-13
Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 5/145 (3%)
Query: 58 GVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKY--KGPIAVH 115
V R+ + ++ AG+ + D P + + F+ + H
Sbjct: 160 EGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWPTPENIDRFLAFYRTLPQDAWLHFH 219
Query: 116 CKAGLGRTGCLIGAY-MIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQHVLQNV-G 173
+AG+GRT + M+K+ +S + + + G G KD
Sbjct: 220 SEAGVGRTTAFMVMTDMLKNPSVSLKDILY-RQHEIGGFYYGEFPIKTKDKDSWKTKYYR 278
Query: 174 DKYRSIRQRTTNIQRHPYGIYSKKW 198
+K I Q +Q + Y W
Sbjct: 279 EKIVMIEQFYRYVQENRADGYQTPW 303
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline
type II helix, PPII, ligase/signaling protein complex;
NMR {Homo sapiens} PDB: 2lb1_A
Length = 42
Score = 63.0 bits (154), Expect = 2e-13
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 320 SDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
PLPPGW I T GR Y++DHN +TT ++ P
Sbjct: 3 LGSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 37
Score = 46.9 bits (112), Expect = 2e-07
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 354 PLEKEGLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
PL LP GWE VYFV+H R Q+ P
Sbjct: 2 PLGSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 37
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {}
SCOP: k.22.1.1
Length = 37
Score = 62.6 bits (153), Expect = 4e-13
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
LPPGW T G+ YY +HNTKT+ W+ P
Sbjct: 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDP 33
Score = 46.4 bits (111), Expect = 2e-07
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 358 EGLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
GLP GW+ + Y+ NH T+ + + P
Sbjct: 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDP 33
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 61.2 bits (149), Expect = 1e-12
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+S LPPGW + +GR+YY++ T T W P
Sbjct: 2 SSGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERP 37
Score = 41.2 bits (97), Expect = 2e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 356 EKEGLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
GLP GW+ +P+ Y+VN T + +E P
Sbjct: 4 GSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERP 37
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 69.1 bits (168), Expect = 2e-12
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 4/140 (2%)
Query: 62 VVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYK--GPIAVHCKAG 119
V++ +++ + GL + D P + EFI + HC+AG
Sbjct: 481 PVKIESVMTEQQLVEKNGLHYYRIAATDHIWPSAANIDEFINFTRTMPANAWLHFHCQAG 540
Query: 120 LGRTGCLIGAY-MIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQHVLQNVGDKYRS 178
GRT + Y M+K+ +S + ++ + V D K
Sbjct: 541 AGRTTAYMAMYDMMKNPDVSLGDILSRQYLLGGNYVAYEIAKPKPDQWKADYY-HQKAHM 599
Query: 179 IRQRTTNIQRHPYGIYSKKW 198
I + +Q + + W
Sbjct: 600 IEKFYQYVQENHADGFKTSW 619
Score = 64.8 bits (157), Expect = 3e-11
Identities = 32/225 (14%), Positives = 66/225 (29%), Gaps = 22/225 (9%)
Query: 72 ERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYK--GPIAVHCKAGLGRTGCLIGA 129
E + G ++ D P + + +F++ + + HC AG+GRT +
Sbjct: 193 EEMVKQHGANYFRLTLQDHFRPDDPDVDKFLEFYKSLPKDAWLHYHCYAGMGRTTIFMVM 252
Query: 130 Y-MIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQHVLQNVGDKYRSIRQRTTN--- 185
+ ++K+ K + + I I R + V + D + R +
Sbjct: 253 HDILKNAKDVSFDDI----IQRQKLIGIVDLSEIPDKKKNYGRKAYIERYQFVQHFYDYV 308
Query: 186 IQRHPYGIYSKKWKAKQALDTRSPGMGALTPNKENSPVRGRGVHTAPAIPKREQNNFVLA 245
+ W K +++ P N + + + P NF
Sbjct: 309 KENPDLKTPYSVWAKKNKVNSWEPD-----YNGYIWRLDTKDRNQLP-------RNFRTM 356
Query: 246 NIKKPLTTLCRRKPNNVMNARAETQADNLLLMSALSPSYISLHDI 290
N ++ D L + + S L +
Sbjct: 357 NSAFRTDVNVKKTGKGFTPTPTRKGLDTLYMSGSAEFSNGELQAM 401
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein
binding; NMR {Homo sapiens}
Length = 92
Score = 62.4 bits (151), Expect = 2e-12
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 318 EASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLE------KEGLPTGWERIENPE 371
A W+ + GR YY + TK + W P + + W+ ++
Sbjct: 5 AAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDS 64
Query: 372 YGVYFVNHITRQAQYEHP 389
Y+ N T+++++ P
Sbjct: 65 GKTYYYNSQTKESRWAKP 82
Score = 38.1 bits (88), Expect = 6e-04
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 314 QQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKE 358
L +++L W + G+ YY + TK + W+ P E E
Sbjct: 42 DDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKELE 86
Score = 37.0 bits (85), Expect = 0.002
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 358 EGLPTGWERIENPEYGVYFVNHITRQAQYEHPCAPHYIYQP 398
G + W ++P+ Y+ N T+Q+ +E P +
Sbjct: 10 SGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQ 50
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain,
UBL-conjugation pathway, structural GE structural
genomics consortium, SGC, coiled coil; HET: MSE; 1.80A
{Homo sapiens}
Length = 109
Score = 61.2 bits (148), Expect = 7e-12
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
A L LP GW I +G+ +++DHN++ T + P
Sbjct: 67 ADTRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDP 102
Score = 45.4 bits (107), Expect = 2e-06
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 313 SQQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKEGLPTGWERIENPEY 372
+ H + R +I+ + LP GWE + +
Sbjct: 34 TCLKHMILKVRRDARNFERYQHNRDLVNFINMFAD--------TRLELPRGWEIKTDQQG 85
Query: 373 GVYFVNHITRQAQYEHP 389
+FV+H +R + P
Sbjct: 86 KSFFVDHNSRATTFIDP 102
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR
{Homo sapiens}
Length = 54
Score = 54.1 bits (130), Expect = 5e-10
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
LP GW + G+ +++DH K T + P
Sbjct: 11 DLPYGWEQETDENGQVFFVDHINKRTTYLDP 41
Score = 44.0 bits (104), Expect = 2e-06
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHP 389
LP GWE+ + V+FV+HI ++ Y P
Sbjct: 12 LPYGWEQETDENGQVFFVDHINKRTTYLDP 41
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine
phosphatase, hydrolase; 1.26A {Homo sapiens}
Length = 144
Score = 53.3 bits (129), Expect = 9e-09
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
EFI+ ++ G + VH AG+ R ++ +++ + S + ++ RP
Sbjct: 71 FEFIEEAKRKDGVVLVHSNAGVSRAAAIVIGFLMNSEQTSFTSAFSLVKNARP 123
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21,
WBP4, metal- binding, mRNA processing, mRNA splicing,
nucleus, polymorphism; NMR {Homo sapiens}
Length = 75
Score = 51.2 bits (122), Expect = 1e-08
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLE------KEGLPTGWERIENPEYGVYFV 377
P W T G YY D + + W P K + T W + + Y+
Sbjct: 2 PSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYY 61
Query: 378 NHITRQAQYEHP 389
N T ++++E P
Sbjct: 62 NTETGESRWEKP 73
Score = 34.6 bits (79), Expect = 0.007
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 312 PSQQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLE 356
+ + + W + G YY + T + W P +
Sbjct: 31 KPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75
Score = 31.6 bits (71), Expect = 0.089
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHPCAPHYIYQPE 399
W E Y+ + I+ +Q+E P +
Sbjct: 3 SKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKT 42
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase;
2.10A {Homo sapiens}
Length = 145
Score = 52.6 bits (127), Expect = 1e-08
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
+FI +K+ VH K G+ R+ + AY +K Y + +++ R
Sbjct: 71 YKFISKAKKHGSKCLVHSKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRT 123
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase,
nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Length = 144
Score = 52.5 bits (127), Expect = 2e-08
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
E+I + +G + VH +AG+ R+ + AY++ ++ E +++ R
Sbjct: 71 IEYIDAVKDCRGRVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRS 123
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase,
hypothetical protein; 2.7A {Saccharomyces cerevisiae}
PDB: 2j17_A* 2j16_B
Length = 182
Score = 53.2 bits (128), Expect = 2e-08
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 96 DILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
L I + I +H + GL R+ LI AY++K++ +S + ++
Sbjct: 104 PSLTSIIHAATTKREKILIHAQCGLSRSATLIIAYIMKYHNLSLRHSYDLLKSRAD 159
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase;
HET: BOG; 2.40A {Homo sapiens}
Length = 160
Score = 52.2 bits (126), Expect = 3e-08
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
FI C G VH AG+ R+ ++ AY++ + + + ++ RP
Sbjct: 74 INFIHCCRLNGGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRP 126
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase
activating protein, 4-helix bundle, disorder, signaling
protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1
c.45.1.2 PDB: 1g4u_S
Length = 383
Score = 54.1 bits (130), Expect = 5e-08
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 14/82 (17%)
Query: 88 PDGTAPPN-DILCEFIKVCEKY------------KGPIAVHCKAGLGRTGCLIGA-YMIK 133
PD P+ D L + K +HC G+GRTG + A +
Sbjct: 280 PDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKD 339
Query: 134 HYKMSAMETIAWMRICRPGCVI 155
+ + + A R R ++
Sbjct: 340 NPHSNLEQVRADFRDSRNNRML 361
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure,
hydrolase; HET: EPE; 2.00A {Homo sapiens}
Length = 188
Score = 51.9 bits (125), Expect = 5e-08
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
+ I E +G +HC AG+ R+ L AY++K++ MS ++ W + CRP
Sbjct: 87 ADHIHSVEMKQGRTLLHCAAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCRP 139
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics,
phosphatase, PSI-2, protein structure initiative; 1.60A
{Homo sapiens}
Length = 154
Score = 51.5 bits (124), Expect = 5e-08
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
EFI + G + VH AG+ R+ + AY+++ + M + A+++ R
Sbjct: 80 KEFIDGSLQMGGKVLVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYVQERRF 132
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A
{Homo sapiens}
Length = 149
Score = 51.0 bits (123), Expect = 5e-08
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
EFI+ + + +HC+AG+ R+ ++ AY++KH +M+ + +++ RP
Sbjct: 73 FEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRP 125
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Mus musculus}
Length = 164
Score = 51.5 bits (124), Expect = 5e-08
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
C ++ + G V+CK G R+ + AY+++H S ++ RP
Sbjct: 79 CAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRHRGHSLDRAFQMVKSARP 131
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 51.5 bits (124), Expect = 6e-08
Identities = 7/53 (13%), Positives = 24/53 (45%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
+FI + K + + G+ + ++ A+++ + ++S + ++ P
Sbjct: 77 IKFIIRSIQRKEGVLIISGTGVNKAPAIVIAFLMYYQRLSFINAFNKVQGLYP 129
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES;
1.50A {Homo sapiens}
Length = 165
Score = 51.1 bits (123), Expect = 8e-08
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
+FI C VHC AG+ R+ L+ AY++ + + +R R
Sbjct: 73 IKFIHECRLRGESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDALHTVRAGRS 125
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase,
structural genomics, PSI-2, protein structure
initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Length = 155
Score = 50.7 bits (122), Expect = 8e-08
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
EFI + VH AG+ R+ + AY+++ +S + ++ +
Sbjct: 75 IEFIDEALSQNCGVLVHSLAGVSRSVTVTVAYLMQKLHLSLNDAYDLVKRKKS 127
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase,
dual specifici phosphatase; 1.88A {Homo sapiens}
Length = 190
Score = 50.8 bits (122), Expect = 1e-07
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
+ I + G VHC AG+ R+ L AY++K + + +E W++ RP
Sbjct: 93 ADKIHSVSRKHGATLVHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWVKARRP 145
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 50.5 bits (121), Expect = 2e-07
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS-----AMETIAWMRICRP 151
F+ C++ P+ VH AG+ R+G +I AY++ K S + MR R
Sbjct: 98 TAFLSKCDQRNEPVLVHSAAGVNRSGAMILAYLMSKNKESLPMLYFLYVYHSMRDLRG 155
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 51.7 bits (123), Expect = 2e-07
Identities = 16/109 (14%), Positives = 27/109 (24%), Gaps = 9/109 (8%)
Query: 65 LNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCE-------KYKGPIAVHCK 117
++ + + + H+ D D+ V + G VH
Sbjct: 57 VDISSIQAYAKKYSDIQHIRCEIRDF--DAFDLRMRLPAVVGTLYKAVKRNGGVTYVHST 114
Query: 118 AGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQ 166
AG+GR + YM ME + R
Sbjct: 115 AGMGRAPAVALTYMFWVQGYKLMEAHKLLMSKRSCFPKLDAIRNATIDI 163
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded
B-sheet, hydrolase; 2.80A {Homo sapiens}
Length = 177
Score = 50.0 bits (120), Expect = 2e-07
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
EFI+ + + +HC+AG+ R+ ++ AY++KH +M+ + +++ RP
Sbjct: 77 FEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRP 129
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 50.2 bits (120), Expect = 3e-07
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
+FI + G + VH +AG+ R+ + AY++K + E +++ R
Sbjct: 73 IDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRS 125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 4e-07
Identities = 66/429 (15%), Positives = 112/429 (26%), Gaps = 156/429 (36%)
Query: 35 YHPPEKEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPP 94
YH + + + + + L + D K GL+ +++ P
Sbjct: 180 YHVLVGDLIKFSA------------ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 95 NDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSA----------METIA 144
D L I + C LIG + HY ++A +
Sbjct: 228 KDYLLS-----------IPISCP--------LIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 145 WMRICRPGCV----IGVQQDW---LKDVQHVLQN---VGDKYRSIRQRTTNIQRHPYGIY 194
G V I W V+ + +G R P I
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG--VRC--YEAYPNTSLPPSIL 324
Query: 195 SKKWKAKQALDTRSPGMGALTPNKENSP---VRG--RGV------HTAPAIPKREQ---- 239
D+ G P SP + + T +P +Q
Sbjct: 325 E---------DSLENNEG--VP----SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 240 -----NNFVLANIKKPLTTLCR--RKPNNVMNARAETQAD-NLLLMSALSPSYIS--LHD 289
N V++ + L L RK A+A + D + + S + + L
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRK------AKAPSGLDQSRIPFSERKLKFSNRFL-- 421
Query: 290 IPDNMPYHFTPY-PPQIPSISCH-PSQQLHEASDELPLPPGWSIDFT-----LRGRKYYI 342
P P+H + P I+ + + ++ +P + T LR I
Sbjct: 422 -PVASPFH-SHLLVPASDLINKDLVKNNVSFNAKDIQIP----VYDTFDGSDLRVLSGSI 475
Query: 343 DHN------TKTTHW--------SHPLE----------------KEGLPTGWERIE---- 368
W +H L+ K+G TG I
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG--TGVRVIVAGTL 533
Query: 369 ----NPEYG 373
+ +YG
Sbjct: 534 DINPDDDYG 542
Score = 45.8 bits (108), Expect = 3e-05
Identities = 38/242 (15%), Positives = 70/242 (28%), Gaps = 57/242 (23%)
Query: 307 SISCHPSQQLHEASDE--LPLPPG-WSIDFTLRGRKYYIDHNTKTTHWSHPLEKEGLPTG 363
+ S P L S E L +P + I L+ + K P EG
Sbjct: 3 AYSTRPLT-LSHGSLEHVLLVPTASFFIASQLQ------EQFNKI----LPEPTEGFAAD 51
Query: 364 WERIENPEYGVYFVNHITRQAQYEHPCAPHYIYQPEVRIALAPPPPPRH--TQY----QP 417
E E F+ +++ + + + + L Y
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQ----FDQVLNLCL------TEFENCYLEGNDI 101
Query: 418 HSVIVPANPYLNQEIP---MWLSVYSRASQDLDHKLRWE----LFRLPELD------CFN 464
H++ + + + Y A + LFR F
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 465 GM-LTRLYKQELEDIVMRHEAYRS---ALLCEMDRRL---SQSQQDARQI----IESVDW 513
G T Y +EL D+ ++ Y L+ L ++ DA ++ + ++W
Sbjct: 162 GQGNTDDYFEELRDL---YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 514 LQ 515
L+
Sbjct: 219 LE 220
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein,
structural genomics, NPPSFA, project on protein
structural and functional analyses; 1.67A {Homo sapiens}
Length = 151
Score = 48.8 bits (117), Expect = 4e-07
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 99 CEFI-KVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
+FI + + G I VHC G+ R+ L+ AY++ ++ ++ +E I ++ R
Sbjct: 74 ADFIHRALSQPGGKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHRG 127
>2q05_A Late protein H1, dual specificity protein phosphatase; structural
genomics, APC7320, P protein structure initiative; HET:
MSE; 2.57A {Vaccinia virus WR}
Length = 195
Score = 49.3 bits (118), Expect = 5e-07
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 99 CEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMS-----AMETIAWMRICRP 151
F+ C++ P+ VHC AG+ R+G +I AY++ K S + MR R
Sbjct: 115 TAFLSKCDQRNEPVLVHCAAGVNRSGAMILAYLMSKNKESLPMLYFLYVYHSMRDLRG 172
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A
{Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A*
1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A*
1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A*
1pa9_A* 1yts_A
Length = 306
Score = 50.1 bits (120), Expect = 7e-07
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 109 KGPIAVHCKAGLGRTGCLIGAYMI---KHYKMSAMETIAWMRICRPGCVI 155
K +H +AG+GRT LIGA + ++ ++S + ++ MR+ R G ++
Sbjct: 234 KLRPVIHSRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMV 283
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 7e-07
Identities = 96/613 (15%), Positives = 182/613 (29%), Gaps = 176/613 (28%)
Query: 15 IVPNKLLAFSGPNTTEQNTCYHPPEKEWSENMSRKIHH-LKCPNGVQLVVRL------NQ 67
I+ AF + C + S +I H + + V +RL Q
Sbjct: 21 ILSVFEDAF-----VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 68 KNYDERKFTEAGLDHVDFYF--------PDGTAPPN-------DILCEFIKVCEKYKGP- 111
+ ++ F E L +++ F + D L +V KY
Sbjct: 76 EEMVQK-FVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 112 -------------------IAVHCKAGLGRTGCLIGAYMIKHYKMSAME-TIAWMRI--- 148
+ + G G+T + + + M+ I W+ +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 149 CRPGCVIGVQQDWLKDVQHVLQNVGDKYRSIRQRTTNIQ--------RHPY--------G 192
P V+ + Q L + + D +I+ R +IQ PY
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 193 IYSKK-WKA-----KQALDTRSPGMGALTPNKENSPVRGRGVHTAPAIPKREQNNFVLAN 246
+ + K W A K L TR + + + H + + E + +L
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPDEVKSLLLKY 310
Query: 247 IKKPLTTLCRRKPNNVMNARAETQADNLLLMSALSPSYISLHDIPDNMPYHFTPYPPQIP 306
+ L E N +S ++ S+ D + +
Sbjct: 311 LDCRPQDL-----------PREVLTTNPRRLSIIAE---SIRD----GLATWDNW----K 348
Query: 307 SISCHPSQQLHEASDELPLPPGWSIDFTLRGRKYYID-----HNTKTTHWSHPLEKEGLP 361
++C + E+S + L P ++ RK + + +P
Sbjct: 349 HVNCDKLTTIIESSLNV-LEPA---EY----RKMFDRLSVFPPSAH------------IP 388
Query: 362 TG-----WERIENPEYGV-YFVNHITRQAQYEHPCAPHYIYQPEVRIALAPPPPPRHTQY 415
T W + + V VN + + + E I P + + L +Y
Sbjct: 389 TILLSLIWF--DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE---NEY 443
Query: 416 QPHSVIV-----PANPYLNQEIPMWLSVY-----SRASQDLDHKLRWELFRLPELD---- 461
H IV P + IP +L Y ++++H R LFR+ LD
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 462 -----------CFNGMLT------RLYKQELEDIVMRHEAYRSALLCEMDRRLSQSQQDA 504
+G + + YK + D ++ L+ + L + +++
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICD----NDPKYERLVNAILDFLPKIEEN- 558
Query: 505 RQIIES--VDWLQ 515
+I S D L+
Sbjct: 559 --LICSKYTDLLR 569
Score = 32.5 bits (73), Expect = 0.41
Identities = 26/204 (12%), Positives = 59/204 (28%), Gaps = 74/204 (36%)
Query: 40 KEWSENMSRKIHHLKCPNGVQLVVRLNQKNYDE--RKFTEAGLDHVDF---YFPDGTAPP 94
++ + + I + L +++ +N R +DH + + D PP
Sbjct: 418 EKQPKESTISIPSI------YLELKVKLENEYALHRSI----VDHYNIPKTFDSDDLIPP 467
Query: 95 NDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAYM--IKHY-KMSAMETI----AWM- 146
++Y H IG ++ I+H +M+ + ++
Sbjct: 468 YL---------DQY---FYSH-----------IGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 147 -RICRPG---CVIGVQQDWLKDV----QHVLQN-------VGDKYRSIRQRTTNIQRHPY 191
+I G + L+ + ++ N V + + N+ Y
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 192 -------------GIYSKKWKAKQ 202
I+ + K Q
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQ 588
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT; 1.90A
{Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 48.1 bits (115), Expect = 1e-06
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 99 CEFIKVCEKYKG-PIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
+FI K + VHC+ G R+ L+ AY++ KM ++ +R R
Sbjct: 104 ADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNRE 157
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual
specificity phosphatase, DUSP13, testis and skeletal
muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Length = 205
Score = 47.8 bits (114), Expect = 2e-06
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 99 CEFIKVCEKYKG-PIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
+I+ + VHC G+ R+ L+ A+++ + M+ +E I ++ R
Sbjct: 120 ARYIRAALSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHRN 173
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Length = 219
Score = 47.4 bits (113), Expect = 3e-06
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 99 CEFIKVC-EKYKGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMRICRP 151
FI I VHC G R+ L+ AY++ H M+ ++ I + R
Sbjct: 128 AAFIDRALSDDHSKILVHCVMGRSRSATLVLAYLMIHKDMTLVDAIQQVAKNRC 181
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 49.0 bits (117), Expect = 3e-06
Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 21/152 (13%)
Query: 88 PDGTAP--PNDILCEFIK----VCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM 140
PD P P+ +L + + + GPI VH AG+GRTG IG M++ +
Sbjct: 197 PDHGVPEDPHLLL-KLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENK 255
Query: 141 ----ETIAWMRICRPGCVIGVQQ---------DWLKDVQHVLQNVGDKYRSIRQRTTNIQ 187
+ +R R V Q ++ + + + + +
Sbjct: 256 VDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEYNQFGETEVNLSELHPYLHNMKKRDPP 315
Query: 188 RHPYGIYSKKWKAKQALDTRSPGMGALTPNKE 219
P + ++ + R+ +G NK
Sbjct: 316 SEPSPLEAEFQRLPSYRSWRTQHIGNQEENKS 347
Score = 43.6 bits (103), Expect = 1e-04
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 13/54 (24%)
Query: 110 GPIAVHCKAGLGRTGCLIGAYMIKHYKMSAME---------TIAWMRICRPGCV 154
P+ +HC+ G +TG + + + E + +R R G V
Sbjct: 540 TPLLIHCRDGSQQTGIFCALLNL----LESAETEEVVDIFQVVKALRKARLGMV 589
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 49.0 bits (117), Expect = 3e-06
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 88 PDGTAPPNDILCEFIKVCEKY----KGPIAVHCKAGLGRTGCLIGAYMI-----KHYKMS 138
P+ AP + E I V ++ GP VH + G G L + +
Sbjct: 495 PNPDAPISSTF-ELINVIKEEALTRDGPTIVHDEYGAVSAGMLCALTTLSQQLENENAVD 553
Query: 139 AMETIAWMRICRPGCV 154
+ + + RPG
Sbjct: 554 VFQVAKMINLMRPGVF 569
Score = 45.1 bits (107), Expect = 4e-05
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 88 PDGTAP--PNDILCEFI-KVCEKY---KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM 140
PD P +L F+ + GP+ VHC AG+GRTG I M++ K +
Sbjct: 202 PDMGVPEYALPVL-TFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 260
Query: 141 ----ETIAWMRICRPGCV 154
+ +R R V
Sbjct: 261 VNVLGFLKHIRTQRNYLV 278
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase,
STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB:
2bij_A 2bv5_A*
Length = 305
Score = 47.7 bits (114), Expect = 4e-06
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM----ETIAWMRICRPGCV 154
PI VH AG+GRTGC I + + + +T +R R G +
Sbjct: 231 CAPIIVHSSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMI 281
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase,
phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Length = 253
Score = 47.2 bits (113), Expect = 5e-06
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 88 PDGTAP--PNDILCEFIKVCEKYK-----GPIAVHCKAGLGRTGCLIGA-YMIKHYKMSA 139
P+ P ++ I +K + PI VHC AG GRTG +++ K
Sbjct: 149 PEVGIPSDGKGMI-NIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEG 207
Query: 140 M----ETIAWMRICRPGCV 154
+ +T+ +R+ RP V
Sbjct: 208 ILDVFQTVKSLRLQRPHMV 226
>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R;
PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase;
1.81A {Mus musculus} SCOP: c.45.1.2 PDB: 2a8b_A
Length = 297
Score = 47.3 bits (113), Expect = 5e-06
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM----ETIAWMRICRPGCV 154
+GP+ VHC AG+GRTGC I + K + + +R+ R G V
Sbjct: 222 RGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMV 272
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human
tyrosine phosphatase catalytic domain, LC-PTP,
hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A
2hvl_A 2qdp_A 2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A*
3d42_A* 2a3k_A
Length = 309
Score = 47.3 bits (113), Expect = 5e-06
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM----ETIAWMRICRPGCV 154
GPI VHC AG+GRTGC I + K + +R+ R G +
Sbjct: 233 PGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMI 283
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 46.2 bits (109), Expect = 1e-05
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 312 PSQQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP--LEKEGLPTGWERIEN 369
P+ Q H S + W + YYI+H T+TT W HP E +
Sbjct: 2 PASQ-HFLST--SVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADLNNVRF 58
Query: 370 PEY 372
Y
Sbjct: 59 SAY 61
Score = 38.5 bits (89), Expect = 0.003
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 352 SHPLEKEGLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
S + WER +P Y++NH T+ ++HP
Sbjct: 4 SQHFLSTSVQGPWERAISPNKVPYYINHETQTTCWDHP 41
>2pa5_A Tyrosine-protein phosphatase non-receptor type 9; protein tyrosine
phosphatase, MEG2, PTPN9, structural genomi structural
genomics consortium, SGC; 1.60A {Homo sapiens}
Length = 314
Score = 46.5 bits (111), Expect = 1e-05
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM----ETIAWMRICRPGCV 154
+ PI VHC AG+GRTG + + +T++ MR R +
Sbjct: 233 EPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSI 283
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal
transduction, glycoprotein, phosphorylation, signal;
2.25A {Mus musculus} SCOP: c.45.1.2
Length = 302
Score = 46.5 bits (111), Expect = 1e-05
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 88 PDGTAP--PNDILCEFIK----VCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSA- 139
PD P P +L +F+K +Y G I VHC AG+GRTG + M+
Sbjct: 199 PDFGVPFTPIGML-KFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERK 257
Query: 140 ---METIAWMRICRPGCV 154
++ +R R V
Sbjct: 258 VDVYGFVSRIRAQRCQMV 275
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14,
hydrolase; 1.65A {Homo sapiens}
Length = 325
Score = 46.1 bits (110), Expect = 1e-05
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA----YMIKHYKM-SAMETIAWMRICRPGCV 154
PI VHC AG+GRTG LI + Y ++H + + +R R +
Sbjct: 252 HPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMI 302
>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine
phosphatase, hydrolase; 2.39A {Trypanosoma brucei}
Length = 306
Score = 46.1 bits (110), Expect = 1e-05
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM------ETIAWMRICRPGCV 154
PI VHC AG+GRTG LIGA + H + + +A M+ R G V
Sbjct: 222 TSPILVHCSAGIGRTGTLIGAYAALLHIERGILTDSTVYSIVAAMKQKRFGMV 274
>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine
phosphatase, human, structural GE structural genomics
consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo
sapiens} PDB: 1rpm_A 2c7s_A
Length = 286
Score = 46.0 bits (110), Expect = 1e-05
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 88 PDGTAP--PNDILCEFIK----VCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM 140
PD P +L F++ + GPI VHC AG GRTGC I M+ + +
Sbjct: 186 PDHGVPCYATGLL-GFVRQVKFLNPPEAGPIVVHCSAGAGRTGCFIAIDTMLDMAENEGV 244
Query: 141 ----ETIAWMRICRPGCV 154
+ +R R V
Sbjct: 245 VDIFNCVRELRAQRVNLV 262
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 46.6 bits (111), Expect = 1e-05
Identities = 28/142 (19%), Positives = 44/142 (30%), Gaps = 37/142 (26%)
Query: 42 WSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKF--TEAGLDHVD---------FYF--- 87
W S + +++ + R F T F+F
Sbjct: 435 WPTEGSVTHGEIT----IEIKNDTLSEAISIRDFLVTLNQPQARQGEQVRVVRQFHFHGW 490
Query: 88 PDGTAPPN-DILCEFIKVCEKY-----KGPIAVHCKAGLGRTGCLIGAYMIKHYKMSAME 141
P+ P + + I +K PI VHC AG GRTG I I + ++
Sbjct: 491 PEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNI----LERVK 546
Query: 142 ---------TIAWMRICRPGCV 154
+ +R+ RP V
Sbjct: 547 AEGLLDVFQAVKSLRLQRPHMV 568
Score = 46.6 bits (111), Expect = 1e-05
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 88 PDGTAP--PNDILCEFIK----VCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM 140
PD P P +L +F+K + + GPI VHC AG+GRTG I M+
Sbjct: 197 PDFGVPFTPIGML-KFLKKVKTLNPVHAGPIVVHCSAGVGRTGTFIVIDAMMAMMHAEQK 255
Query: 141 ----ETIAWMRICRPGCV 154
E ++ +R RP V
Sbjct: 256 VDVFEFVSRIRNQRPQMV 273
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU
genomics, structural genomics consortium, SGC,
hydrolase; 1.54A {Homo sapiens}
Length = 287
Score = 45.7 bits (109), Expect = 1e-05
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 94 PNDILCEFIKVCEKY---KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM----ETIAW 145
+D L EF+ P+ VHC AG+GRTG L+ + + + + +
Sbjct: 192 SSDFL-EFVNYVRSLRVDSEPVLVHCSAGIGRTGVLVTMETAMCLTERNLPIYPLDIVRK 250
Query: 146 MRICRPGCV 154
MR R V
Sbjct: 251 MRDQRAMMV 259
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine
phosphatase, lymphoid phosphatase, PEP, LYP, struct
genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A
2qct_A* 2qcj_A* 3olr_A* 3omh_A*
Length = 309
Score = 45.8 bits (109), Expect = 2e-05
Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 88 PDGTAP--PNDILCEFI----KVCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM 140
PD P + IL E I E PI +HC AG GRTG + Y K +
Sbjct: 194 PDHDVPSSIDPIL-ELIWDVRCYQEDDSVPICIHCSAGCGRTGVICAIDYTWMLLKDGII 252
Query: 141 E-------TIAWMRICRPGCV 154
I MR RP V
Sbjct: 253 PENFSVFSLIREMRTQRPSLV 273
>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism,
phosphorylation, endoplasmic reticulum, oxidation,
hydrolase, acetylation; 1.5A {Homo sapiens} SCOP:
c.45.1.2 PDB: 2cm3_A 2cmb_A* 2cmc_A* 2cne_A* 3a5j_A
2cma_A 3a5k_A 3eu0_A 3sme_A 2azr_A* 2b07_A* 2h4g_A*
2h4k_A* 2hb1_A* 2qbp_A* 2qbq_A* 2qbr_A* 2qbs_A* 2zmm_A*
2zn7_A* ...
Length = 304
Score = 45.7 bits (109), Expect = 2e-05
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 109 KGPIAVHCKAGLGRTGCLIG----AYMIKHYKMSAM----ETIAWMRICRPGCV 154
GP+ VHC AG+GR+G ++ K + + + MR R G +
Sbjct: 214 HGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLI 267
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 46.6 bits (111), Expect = 2e-05
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 88 PDGTAP--PNDILCEFIK----VCEKYKGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM 140
PD P P IL F++ GP+ VHC AG+GRTGC I M++ K
Sbjct: 183 PDHGVPEYPTPIL-AFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKT 241
Query: 141 ----ETIAWMRICRPGCV 154
+ MR R V
Sbjct: 242 VDIYGHVTCMRSQRNYMV 259
Score = 44.6 bits (106), Expect = 6e-05
Identities = 32/137 (23%), Positives = 47/137 (34%), Gaps = 31/137 (22%)
Query: 42 WSENMSRKIHHLKCPNGVQLVVRLNQKNYDERKFTEAGLDHVD---------FYF---PD 89
W S + + V + N Y R+F + F F P+
Sbjct: 421 WPAERSARYQYFV----VDPMAEYNMPQYILREFK---VTDARDGQSRTIRQFQFTDWPE 473
Query: 90 GTAPPN-DILCEFIKVCEKY------KGPIAVHCKAGLGRTGCLIGAYMI-----KHYKM 137
P + +FI K GPI VHC AG+GRTG I ++ +
Sbjct: 474 QGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVV 533
Query: 138 SAMETIAWMRICRPGCV 154
+T+ +R RP V
Sbjct: 534 DMFQTVKTLRTQRPAMV 550
>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP,
tyrosine phosphatase, MEG-1, structural genomics
structural genomics consortium, SGC; 2.45A {Homo
sapiens}
Length = 320
Score = 45.8 bits (109), Expect = 2e-05
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM----ETIAWMRICRPGCV 154
+ P+ VHC AG+GRTG LI + + + + + MR R +
Sbjct: 237 EEPVVVHCSAGIGRTGVLITMETAMCLIECNQPVYPLDIVRTMRDQRAMMI 287
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 46.4 bits (110), Expect = 2e-05
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 33/125 (26%)
Query: 59 VQLVVRLNQKNYDERKFTEAGLDHVD----------FYF---PDGTAP--PNDILCEFI- 102
V+ V +Y R+ L V ++F PD P P +L +F+
Sbjct: 385 VRNVKESAAHDYTLRELK---LSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVL-DFLE 440
Query: 103 KVCEKYK-----GPIAVHCKAGLGRTGCLIGA----YMIKHYKMSAM----ETIAWMRIC 149
+V K + GP+ VHC AG+GRTG I +I+ + +TI +R
Sbjct: 441 EVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQ 500
Query: 150 RPGCV 154
R G V
Sbjct: 501 RSGMV 505
Score = 34.8 bits (80), Expect = 0.071
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 110 GPIAVHCKAG---LGRTGCLIGAY-MIKHYKMSAM 140
+ + C+ +G +++HYK + M
Sbjct: 168 THVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPM 202
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 45.4 bits (108), Expect = 2e-05
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 88 PDGTAPPNDILCEFIKVCEKY--KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM---- 140
P L FI GPI HC AG+GR+G LI ++
Sbjct: 220 PSQPDD----LLTFISYMRHIHRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDIS 275
Query: 141 ETIAWMRICRPGCV 154
+ + MR+ R G V
Sbjct: 276 DLVRCMRLQRHGMV 289
>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase,
substrate specificity, residue shift, signaling protein;
HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB:
1gwz_A
Length = 284
Score = 45.4 bits (108), Expect = 2e-05
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA----YMIKHYKMSA----METIAWMRICRPGCV 154
GPI VH AG+GRTG +I I + +TI +R R G V
Sbjct: 204 AGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMV 257
>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine
phosphatase, glepp1, PTPU2, structural genom structural
genomics consortium, SGC; 2.15A {Homo sapiens} PDB:
2g59_A 2pi7_A
Length = 295
Score = 45.3 bits (108), Expect = 2e-05
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM----ETIAWMRICRPGCV 154
KGP+ +HC AG+GRTG I +++H + ++ MR R V
Sbjct: 216 KGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMV 266
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor
phosphatase, human, structural GENO structural genomics
consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB:
3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A*
3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A*
3qcn_A
Length = 320
Score = 45.4 bits (108), Expect = 3e-05
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 88 PDGTAP--PNDILCEFI-KVCEKY---KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSA- 139
PD P +L F+ + GP+ VHC AG+GRTG I M++ K +
Sbjct: 220 PDMGVPEYALPVL-TFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 278
Query: 140 ---METIAWMRICRPGCV 154
+ + +R R V
Sbjct: 279 VNVLGFLKHIRTQRNYLV 296
>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis,
signal transduction, developm protein, hydrolase; 2.40A
{Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*
Length = 307
Score = 45.0 bits (107), Expect = 3e-05
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM----ETIAWMRICRPGCV 154
+ PI VHC AG+GR+G I +++ S + MR R V
Sbjct: 235 QRPIVVHCSAGVGRSGTFITLDRILQQINTSDYVDIFGIVYAMRKERVWMV 285
>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11,
tyrosine phosphatase, structural genomics, STR genomics
consortium, SGC, deafness; 1.60A {Homo sapiens} PDB:
3jrl_A* 3mow_A* 3o5x_A*
Length = 316
Score = 45.0 bits (107), Expect = 3e-05
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA----YMIKHYKMSA----METIAWMRICRPGCV 154
GP+ VHC AG+GRTG I +I+ + +TI +R R G V
Sbjct: 239 AGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMV 292
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 45.6 bits (108), Expect = 3e-05
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA----YMIKHYKMSA----METIAWMRICRPGCV 154
GPI VHC AG+GRTG +I I + +TI +R R G V
Sbjct: 446 AGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMV 499
Score = 41.0 bits (96), Expect = 9e-04
Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 15/131 (11%)
Query: 26 PNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRL----NQKNYDERKFTEAGLD 81
TE Y + + IH N + +A +
Sbjct: 70 ATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGE 129
Query: 82 HVDFYFPDGTAPPND----ILCEFIKVCEKYK---GPIAVHCKAGLGRTGCLIG----AY 130
F + + P D +L + K I V C+ G G L
Sbjct: 130 PWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTD 189
Query: 131 MIKHYKMSAME 141
+++H+K + +E
Sbjct: 190 LVEHFKKTGIE 200
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo
sapiens} SCOP: c.45.1.2
Length = 314
Score = 45.0 bits (107), Expect = 3e-05
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSAM----ETIAWMRICRPGCV 154
GP +HC AG+GR+G + + + + MR R G +
Sbjct: 209 HGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLLNMRKYRMGLI 259
>2f46_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria
meningitidis Z2491}
Length = 156
Score = 43.1 bits (101), Expect = 3e-05
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 71 DERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTGCLIGAY 130
++ +AG+ + F ++ + + P+ +C+ G R L G
Sbjct: 64 IKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQAEYPVLAYCRTGT-RCSLLWGFR 122
Query: 131 MIKHYKMSAMETIAWMR 147
M E I +
Sbjct: 123 RAAE-GMPVDEIIRRAQ 138
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 45.3 bits (107), Expect = 4e-05
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA----YMIKHYKMSA----METIAWMRICRPGCV 154
GPI VH AG+GRTG +I I + +TI +R R G V
Sbjct: 446 AGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMV 499
Score = 41.5 bits (97), Expect = 7e-04
Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 15/131 (11%)
Query: 26 PNTTEQNTCYHPPEKEWSENMSRKIHHLKCPNGVQLVVRL----NQKNYDERKFTEAGLD 81
TE Y + + IH N + +A +
Sbjct: 70 ATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGE 129
Query: 82 HVDFYFPDGTAPPND----ILCEFIKVCEKYK---GPIAVHCKAGLGRTGCLIG----AY 130
F + + P D +L + K I V C+ G G L
Sbjct: 130 PWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTD 189
Query: 131 MIKHYKMSAME 141
+++H+K + +E
Sbjct: 190 LVEHFKKTGIE 200
>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine
phosphatase, human, structural genomics, structural
genomics consortium, SGC; 1.50A {Homo sapiens}
Length = 303
Score = 44.6 bits (106), Expect = 4e-05
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA----YMIKHYKMSA----METIAWMRICRPGCV 154
P+ VHC AG GRTG L ++ + + + MR RP V
Sbjct: 226 PEPLCVHCSAGCGRTGVLCTVDYVRQLLLTQMIPPDFSLFDVVLKMRKQRPAAV 279
>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine
phosphatase, WPD-loop, sulfamic acid, inhibitor, drug
design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A
2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A*
2i4h_A* 2i5x_A* 2ahs_A
Length = 291
Score = 44.5 bits (106), Expect = 4e-05
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA-YMIKHYKMSA----METIAWMRICRPGCV 154
GP VHC AG+GRTG I +++ + +R+ R V
Sbjct: 218 AGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMV 268
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A
{Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Length = 342
Score = 44.6 bits (106), Expect = 5e-05
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 109 KGPIAVHCKAGLGRTGCLIGA-YMIKHYKM----SAMETIAWMRICRPGCV 154
+ PI VHC AG+GRTG I +I + + +R+ RP V
Sbjct: 237 ESPILVHCSAGVGRTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMV 287
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 44.6 bits (106), Expect = 6e-05
Identities = 20/43 (46%), Positives = 23/43 (53%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKEGLP 361
AS PLP GW + T R Y++DHNTKTT W P L
Sbjct: 3 ASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLD 45
Score = 28.0 bits (63), Expect = 7.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 352 SHPLEKEGLPTGWERIENPEYGVYFVNHITRQAQYEHPCAPHYIYQP 398
S+ + LP+GWE VYFV+H T+ ++ P P + Q
Sbjct: 1 SNASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQN 47
>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein
tyrosine phosphatase precursor, phosph structural
genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A
Length = 301
Score = 43.4 bits (103), Expect = 1e-04
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 14/77 (18%)
Query: 88 PDGTAPPNDILCEFI----KVCEKYKGPIAVHCKAGLGRTGCLIG-----AYMIKHYKM- 137
P T P L +F K PI VHC G GRTG I M K K
Sbjct: 203 PASTRP----LLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGVKEI 258
Query: 138 SAMETIAWMRICRPGCV 154
T+ +R RPG V
Sbjct: 259 DIAATLEHVRDQRPGLV 275
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant
(R14A), oncogenic transformation, small molecule cycle,
rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo
sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A*
2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A*
3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A*
1f8a_B* ...
Length = 166
Score = 40.2 bits (94), Expect = 4e-04
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 352 SHPLEKEGLPTGWE-RIENPEYGVYFVNHITRQAQYEHPCAPHY 394
SH ++E LP GWE + VY+ NHIT +Q+E P
Sbjct: 2 SHMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSS 45
Score = 37.1 bits (86), Expect = 0.004
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 320 SDELPLPPGWSIDFTL-RGRKYYIDHNTKTTHWSHPLEK 357
+DE LPPGW + GR YY +H T + W P
Sbjct: 5 ADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 39.9 bits (93), Expect = 5e-04
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 71 DERKF-TEAGLDHVDFYFP-DGTAPPNDILCEFIKVCEKYKG-PIAVHCKAGLGRTGCLI 127
DE K T+AG+D+V Y P D P + + F +++KG + VHC A R
Sbjct: 58 DEGKLVTQAGMDYV--YIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHCLAN-YRASAFA 114
Query: 128 GAYMIKHYKMSAMETIAWMRICRPGCVIGVQQDWLKDVQ 166
Y +K + M + Q L +V
Sbjct: 115 YLYQLKQGQNPNMAQ-TMTPWNDELAIYPKWQALLTEVS 152
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain,
ordered linker; 1.60A {Candida albicans}
Length = 177
Score = 37.9 bits (88), Expect = 0.003
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 358 EGLPTGWE-RIENPEYGVYFVNHITRQAQYEHP 389
GLP W R+ YF+N T ++ ++ P
Sbjct: 6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPP 38
Score = 36.4 bits (84), Expect = 0.008
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 319 ASDELPLPPGWSIDFTL-RGRKYYIDHNTKTTHWSHP 354
AS LPP W+I + ++Y+++ +T + W P
Sbjct: 2 ASTSTGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPP 38
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3;
Fe65-like protein 2, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Length = 39
Score = 34.6 bits (79), Expect = 0.003
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 359 GLPTGWERIENPEYGVYFVNHITRQAQYEHP 389
GLP GW +I + G Y+ + + Q++ P
Sbjct: 8 GLPPGWRKIHDAA-GTYYWHVPSGSTQWQRP 37
Score = 27.3 bits (60), Expect = 1.2
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 318 EASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+ LPPGW YY + +T W P
Sbjct: 2 SSGSSGGLPPGWR-KIHDAAGTYYWHVPSGSTQWQRP 37
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group
IV, rotamase; NMR {Emericella nidulans}
Length = 54
Score = 33.3 bits (76), Expect = 0.010
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 322 ELPLPPGWSIDFT-LRGRKYYIDHNTKTTHWSHP 354
LP GW + + + YY + T+ + W P
Sbjct: 5 NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPP 38
Score = 33.3 bits (76), Expect = 0.012
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 356 EKEGLPTGWE-RIENPEYGVYFVNHITRQAQYEHP 389
GLP GWE R N + Y+ N TR++++E P
Sbjct: 4 VNTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPP 38
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B
member 1; triple-stranded beta-sheet; NMR {Homo sapiens}
SCOP: b.72.1.1
Length = 55
Score = 33.6 bits (76), Expect = 0.012
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 358 EGLPTGWERIENPEYGVYFVNHITRQAQYEHPCAPH 393
LP GW R+++ G Y+ + T Q+E P
Sbjct: 18 SDLPAGWMRVQDTS-GTYYWHIPTGTTQWEPPGRAS 52
Score = 29.7 bits (66), Expect = 0.29
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 317 HEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
+ + LP GW G YY T TT W P
Sbjct: 12 NAFETDSDLPAGWMRVQDTSGT-YYWHIPTGTTQWEPP 48
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 35.5 bits (81), Expect = 0.013
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 58 GVQLVVRLNQKNYDERK---FTEAGLDHVDFYFPDGTAPPNDILCEFIK-----VCEKYK 109
G++ ++ L + Y E G+ F P +I I+ + ++
Sbjct: 33 GLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKN 92
Query: 110 GPIAVHCKAGLGRTGCLIGAYMIKHYKMSAMETIAWMR 147
P+ +HCK G RTGCL+G K K +
Sbjct: 93 HPVLIHCKRGKHRTGCLVGCLR-KLQKWCLTSIFDEYQ 129
>2dk7_A Transcription elongation regulator 1; structural genomics, WW
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 73
Score = 32.8 bits (74), Expect = 0.027
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 346 TKTTHWSHPLEKEGLP-TGWERIENPEYGVYFVNHITRQAQYEHPCAPHYIYQPEVRIAL 404
+ ++ + P+ +P T W + + V+F N TR + ++ P I + +V +
Sbjct: 3 SGSSGKAKPVATAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRP--DDLIGRADVDKII 60
Query: 405 APPPPPRHT 413
PP +
Sbjct: 61 QEPPHKKSG 69
Score = 30.1 bits (67), Expect = 0.30
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKEGLPTGWERIENP 370
A+ +P P W + +T R ++ + T+ + W P + G + I+ P
Sbjct: 13 ATAPIPGTP-WCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEP 63
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich
peptides, protein-protein interactions, structural
protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A
1zr7_A 2dyf_A
Length = 41
Score = 31.8 bits (72), Expect = 0.033
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 319 ASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLE 356
+ W+ + GR YY + TK + W P +
Sbjct: 4 RASVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW
domain, beta sheet, Fe65, protein binding; 1.33A {Homo
sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Length = 38
Score = 30.0 bits (67), Expect = 0.12
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHPCAPH 393
LP GW R+++ G Y+ + T Q+E P
Sbjct: 4 LPAGWMRVQDTS-GTYYWHIPTGTTQWEPPGRAS 36
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.22.1.1
Length = 40
Score = 28.6 bits (64), Expect = 0.37
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHP 354
W + T G+ YY + T+ + W+ P
Sbjct: 7 GTEEIWVENKTPDGKVYYYNARTRESAWTKP 37
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal
transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB:
2jup_W 2rly_W 2rm0_W 2nnt_A
Length = 37
Score = 28.5 bits (64), Expect = 0.45
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 324 PLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLE 356
W+ T G+ YY ++ T + W P E
Sbjct: 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQE 35
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase;
2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A
1ka4_A
Length = 499
Score = 31.8 bits (71), Expect = 0.63
Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 4/99 (4%)
Query: 300 PYPPQIPSISCHPSQQLHEASDELPLPPGWSIDFTLRGRKYYIDHNTKTTHWSHPLEKEG 359
P+ + ++ L + + R R H + ++
Sbjct: 194 GKVPREHPLEKEKYEREWMERVNLWILQKFGFPLGTRARLDVSAHPF----TTEFGIRDV 249
Query: 360 LPTGWERIENPEYGVYFVNHITRQAQYEHPCAPHYIYQP 398
T + + H A YE +++ P
Sbjct: 250 RITTRYEGYDFRRTILSTVHEFGHALYELQQDERFMFTP 288
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate
reduction, oxidored sulfite reduction; HET: SRM; 1.76A
{Desulfovibrio gigas} PDB: 3or2_C* 2v4j_C* 2xsj_C*
Length = 105
Score = 28.9 bits (65), Expect = 1.3
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 84 DFYFPDGTAPPNDILCEFIKVCEKY------KGPIAVHCK-AGLGR-TGCL 126
D+Y +G AP IL + K GP CK AGL + TGC+
Sbjct: 55 DYYKANGIAPMVRILSKNTGFALKEIYELFPSGPGKGACKMAGLPKPTGCV 105
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical
bundle, structural genomics, PSI, protein structure
initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Length = 111
Score = 28.9 bits (65), Expect = 1.6
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 84 DFYFPDGTAPPNDILCEFIKVCEKY------KGPIAVHCK-AGLGR-TGCL 126
+++ GT PP ++ + + GP CK AG + TGC+
Sbjct: 61 EYWETFGTCPPIKMVTKETGFSLEKIYQLFPSGPAHGACKVAGAPKPTGCV 111
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 30.0 bits (67), Expect = 1.7
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 57 NGVQLVVRLNQKNYDERKFTEAGLDHVDFYFPDGTAPPNDILCEFIKVCEKYKGPIAV 114
N + LV+ ++ + F H+ + P + + L F E +KG I
Sbjct: 114 NQLPLVIEFTEQTAP-KIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILF 170
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET:
BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Length = 234
Score = 28.8 bits (65), Expect = 3.6
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 13/52 (25%)
Query: 80 LDHVDF---YFPDGTAPPNDILCEFIKVCEKYKGPIAVH----CKAGLGRTG 124
F Y P+G A + K E Y +A + G+GR
Sbjct: 85 FAAKPFKKSYLPNGLAA------DLAKETEYYDQILAQYPIDLQILGIGRNA 130
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural
genomics, protein structure initiative; 2.04A
{Bacteroides vulgatus atcc 8482}
Length = 320
Score = 28.5 bits (64), Expect = 5.0
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 73 RKFTEAGLDHVDFYFPD--GTAPPNDILCEFIKVCEKYKGPIAVHC 116
K + D D G P ++ +V + P+ H
Sbjct: 150 LKAIDKIADLF--CMVDSFGGITPKEVKNLLKEVRKYTHVPVGFHG 193
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition,
fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis}
PDB: 2bkv_A*
Length = 242
Score = 28.5 bits (64), Expect = 5.5
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 80 LDHVDF-----YFPDGTAPPNDILCEFIKVCEKYKGPIAVHCKAGLGRTG 124
H+D + P+G A + C + G + G+GR G
Sbjct: 89 FQHIDSKPSRHFIPNGNADDLEAECRRYEQLVDSLGDTDIQL-LGIGRNG 137
>2b81_A Luciferase-like monooxygenase; TIM barrel, structural genomics,
PSI, protein structure INIT midwest center for
structural genomics, MCSG; HET: MES; 2.50A {Bacillus
cereus}
Length = 323
Score = 27.8 bits (62), Expect = 9.3
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 73 RKFTEAGLDHVDFYFPDGTAPPNDILCEF 101
+ G++H+ DG P +++L E
Sbjct: 284 DIYKSIGVNHLFLALFDGQRPADEVLDEL 312
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.438
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,325,865
Number of extensions: 497620
Number of successful extensions: 1198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1143
Number of HSP's successfully gapped: 182
Length of query: 515
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 417
Effective length of database: 3,965,535
Effective search space: 1653628095
Effective search space used: 1653628095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)