BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3115
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
          Length = 348

 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 126/208 (60%), Gaps = 9/208 (4%)

Query: 16  DLFTEIQKDRLYFATFKSNRERP-TTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCD 74
           D++ +I  DRL FA   S   RP + + +H+F  D    Y NF+ DFGP+ L+ +YRYC 
Sbjct: 9   DVYLDI-TDRLCFAILYS---RPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCC 64

Query: 75  KLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVP 134
           K+  KL S T+  K I+H+TG++ +K+ NAAFL+GCY +IYL  TP E Y+ L    +  
Sbjct: 65  KINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRIL-IFGETS 123

Query: 135 FIAFQDASDENSKYTLELLECFNAVFKARQHNLXXXXXXXXXEMEKYERIQFGDISWIVP 194
           +I F+DA+  +  + + LL+CF+AV KA Q+           E E YE+ + GD++WI+P
Sbjct: 124 YIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIP 183

Query: 195 NKLLAFSGPNTT---EQNTCYHPPEFYL 219
           ++ +AF GP++    E     H PE Y+
Sbjct: 184 DRFIAFCGPHSRARLESGYHQHSPETYI 211


>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
 pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
          Length = 348

 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 126/208 (60%), Gaps = 9/208 (4%)

Query: 16  DLFTEIQKDRLYFATFKSNRERP-TTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCD 74
           D++ +I  DRL FA   S   RP + + +H+F  D    Y NF+ DFGP+ L+ +YRYC 
Sbjct: 9   DVYLDI-TDRLCFAILYS---RPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCC 64

Query: 75  KLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVP 134
           K+  KL S T+  K I+H+TG++ +K+ NAAFL+GCY +IYL  TP E Y+ L    +  
Sbjct: 65  KINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRIL-IFGETS 123

Query: 135 FIAFQDASDENSKYTLELLECFNAVFKARQHNLXXXXXXXXXEMEKYERIQFGDISWIVP 194
           +I F+DA+  +  + + LL+CF+AV KA Q+           E E YE+ + GD++WI+P
Sbjct: 124 YIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIP 183

Query: 195 NKLLAFSGPNTT---EQNTCYHPPEFYL 219
           ++ +AF GP++    E     H PE Y+
Sbjct: 184 DRFIAFCGPHSRARLESGYHQHSPETYI 211


>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
           Psd-95
 pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
 pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
          Length = 301

 Score = 28.1 bits (61), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 97  NPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAFQDASDENSKYTLELLECF 156
           N  +RL AA L      I +   P  +   L+ N ++     + A D  +K   E  ECF
Sbjct: 210 NAVRRLQAAHL----HPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFTECF 265

Query: 157 NAVFKA 162
           +A+ + 
Sbjct: 266 SAIVEG 271


>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
          Length = 295

 Score = 28.1 bits (61), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 97  NPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAFQDASDENSKYTLELLECF 156
           N  +RL AA L      I +   P  +   L+ N ++     + A D  +K   E  ECF
Sbjct: 204 NAVRRLQAAHL----HPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFTECF 259

Query: 157 NAVFKA 162
           +A+ + 
Sbjct: 260 SAIVEG 265


>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
 pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
          Length = 721

 Score = 27.3 bits (59), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 97  NPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAFQDASDENSKYTLELLECF 156
           N  +RL AA L      I +   P  +   L+ N ++     + A D  +K   E  ECF
Sbjct: 630 NAVRRLQAAHL----HPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFTECF 685

Query: 157 NAVFKA 162
           +A+ + 
Sbjct: 686 SAIVEG 691


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,676,849
Number of Sequences: 62578
Number of extensions: 248969
Number of successful extensions: 444
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 5
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)