BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3115
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UNH5|CC14A_HUMAN Dual specificity protein phosphatase CDC14A OS=Homo sapiens
GN=CDC14A PE=1 SV=1
Length = 594
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 130/203 (64%), Gaps = 7/203 (3%)
Query: 20 EIQKDRLYFATFKSNRERP-TTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCDKLKA 78
E KDRLYFAT R RP +T H+F DE VY NF+ DFGP+ L+ +YRYC KL
Sbjct: 13 EFMKDRLYFATL---RNRPKSTVNTHYFSIDEELVYENFYADFGPLNLAMVYRYCCKLNK 69
Query: 79 KLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAF 138
KL S +L K I+HYT + +KR NAAFLIG YA+IYLK TP E Y+AL + + P++ F
Sbjct: 70 KLKSYSLSRKKIVHYTCFDQRKRANAAFLIGAYAVIYLKKTPEEAYRALLSGSNPPYLPF 129
Query: 139 QDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVPNKLL 198
+DAS N Y L +L+C + K QH FDF+ FDVDE E YER++ GD +WIVP K L
Sbjct: 130 RDASFGNCTYNLTILDCLQGIRKGLQHGFFDFETFDVDEYEHYERVENGDFNWIVPGKFL 189
Query: 199 AFSGP---NTTEQNTCYHPPEFY 218
AFSGP + E H PE Y
Sbjct: 190 AFSGPHPKSKIENGYPLHAPEAY 212
>sp|Q6GQT0|CC14A_MOUSE Dual specificity protein phosphatase CDC14A OS=Mus musculus
GN=Cdc14a PE=2 SV=2
Length = 603
Score = 205 bits (521), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 130/203 (64%), Gaps = 7/203 (3%)
Query: 20 EIQKDRLYFATFKSNRERP-TTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCDKLKA 78
E KDRLYFAT R RP +T IH+F DE VY NF+ DFGP+ L+ +YRYC KL
Sbjct: 13 EFMKDRLYFATL---RNRPKSTINIHYFSIDEELVYENFYADFGPLNLAMVYRYCCKLNK 69
Query: 79 KLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAF 138
KL S +L K I+HYT + +KR NAAFLIG YA+IYLK TP E Y+AL + + P++ F
Sbjct: 70 KLKSYSLSRKKIVHYTSFDQRKRANAAFLIGAYAVIYLKKTPEEAYRALLSGSNPPYLPF 129
Query: 139 QDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVPNKLL 198
+DAS N Y L +L+C + K QH FDF+ FD +E E YER++ GD +WIVP K L
Sbjct: 130 RDASFGNCTYNLTVLDCLQGIRKGLQHGFFDFETFDAEEYEHYERVENGDFNWIVPGKFL 189
Query: 199 AFSGP---NTTEQNTCYHPPEFY 218
AFSGP + E H PE Y
Sbjct: 190 AFSGPHPKSKIENGYPLHAPEAY 212
>sp|Q6PFY9|CC14B_MOUSE Dual specificity protein phosphatase CDC14B OS=Mus musculus
GN=Cdc14b PE=2 SV=1
Length = 485
Score = 169 bits (429), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 136/220 (61%), Gaps = 10/220 (4%)
Query: 5 TPLEGHDVKDLD-LFTEIQKDRLYFATFKSNRERP-TTTKIHFFCTDETHVYLNFFGDFG 62
TP E H ++ D L+ +I DRL FA S RP + T H+F D Y NF+ DFG
Sbjct: 35 TPQELHRLEQQDDLYLDI-TDRLCFAILYS---RPKSATNEHYFSIDNELEYENFYADFG 90
Query: 63 PICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNE 122
P+ L+ +YRYC K+ KL S T+ K IIH+TG + +K+ NAAFL+GCY +IYL TP +
Sbjct: 91 PLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLVGCYMVIYLGRTPED 150
Query: 123 IYKALQANNKVPFIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYE 182
Y+ L + +I F+DA+ + + + LL+CF+AV KA Q+ F+F+ F++DE E YE
Sbjct: 151 AYRTLIFGDTA-YIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNSFNLDEYEHYE 209
Query: 183 RIQFGDISWIVPNKLLAFSGPNTT---EQNTCYHPPEFYL 219
+ + GD +WI+P + LAF GP++ E H PE Y+
Sbjct: 210 KAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYI 249
>sp|O60729|CC14B_HUMAN Dual specificity protein phosphatase CDC14B OS=Homo sapiens
GN=CDC14B PE=1 SV=1
Length = 498
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 133/208 (63%), Gaps = 9/208 (4%)
Query: 16 DLFTEIQKDRLYFATFKSNRERP-TTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCD 74
D++ +I DRL FA S RP + + +H+F D Y NF+ DFGP+ L+ +YRYC
Sbjct: 47 DVYLDI-TDRLCFAILYS---RPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCC 102
Query: 75 KLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVP 134
K+ KL S T+ K I+H+TG++ +K+ NAAFL+GCY +IYL TP E Y+ L +
Sbjct: 103 KINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRIL-IFGETS 161
Query: 135 FIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVP 194
+I F+DA+ + + + LL+CF+AV KA Q+ +F+ F++DE E YE+ + GD++WI+P
Sbjct: 162 YIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIP 221
Query: 195 NKLLAFSGPNTT---EQNTCYHPPEFYL 219
++ +AF GP++ E H PE Y+
Sbjct: 222 DRFIAFCGPHSRARLESGYHQHSPETYI 249
>sp|A4D256|CC14C_HUMAN Dual specificity protein phosphatase CDC14C OS=Homo sapiens
GN=CDC14C PE=2 SV=2
Length = 554
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 132/208 (63%), Gaps = 9/208 (4%)
Query: 16 DLFTEIQKDRLYFATFKSNRERP-TTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCD 74
D++ +I DRL FA S RP + + +H+F D Y NF DFGP+ L+ +YRYC
Sbjct: 124 DVYVDI-TDRLRFAILYS---RPKSASNVHYFSIDNELEYENFSEDFGPLNLAMVYRYCC 179
Query: 75 KLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVP 134
K+ KL S T+ K I+H+TG++ +K+ NAAFL+GCY +IYL TP Y+ L + P
Sbjct: 180 KINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEAAYRILIFGD-TP 238
Query: 135 FIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVP 194
+I F+DA+ + + + LL+CF+AV KA Q+ +F+ F++DE E YE+ + GD++WI+P
Sbjct: 239 YIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIP 298
Query: 195 NKLLAFSGPNTT---EQNTCYHPPEFYL 219
++ +AF GP++ E H PE Y+
Sbjct: 299 DRFIAFCGPHSRARLESGYHQHSPETYI 326
>sp|A6N3Q4|CC14C_HYLSY Dual specificity protein phosphatase CDC14C OS=Hylobates
syndactylus GN=CDC14C PE=3 SV=1
Length = 483
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 131/208 (62%), Gaps = 9/208 (4%)
Query: 16 DLFTEIQKDRLYFATFKSNRERP-TTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCD 74
D++ +I DRL A S RP + + +H+F D Y NF DFGP+ L+ +YRYC
Sbjct: 46 DVYLDI-TDRLRLAILYS---RPKSASNVHYFSIDNELEYENFSEDFGPLNLAMVYRYCC 101
Query: 75 KLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVP 134
K+ KL S T+ K I+H+TG++ +K+ NAAFL+GCY +IYL TP E Y+ L +
Sbjct: 102 KINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRTLIFGD-TS 160
Query: 135 FIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVP 194
+I F+DA+ + + + LL+CF+AV KA Q+ +F+ F++DE E YE+ + GD++WI+P
Sbjct: 161 YIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIP 220
Query: 195 NKLLAFSGPNTT---EQNTCYHPPEFYL 219
++ +AF GP++ E H PE Y+
Sbjct: 221 DRFIAFCGPHSRARLESGYHQHSPETYI 248
>sp|P81299|CDC14_CAEEL Probable tyrosine-protein phosphatase cdc-14 OS=Caenorhabditis
elegans GN=cdc-14 PE=1 SV=2
Length = 1063
Score = 133 bits (334), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 14/229 (6%)
Query: 4 HTPLEGHDVKDLDLFTEIQKDRLYFATFKS----NRERPTTTKIHFFCTDETHVYLNFFG 59
H+P + +++ TE+ +RLYF F + ++ + K F + Y F+
Sbjct: 5 HSPRRNNTIENT--LTELLPNRLYFGCFPNPDAIDKSDKSVKKTCFININNKFHYEPFYE 62
Query: 60 DFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHY-----TGNNPKKRLNAAFLIGCYAII 114
DFGP LS LYR C ++ L + + ++ + TG K R+N A+++G Y II
Sbjct: 63 DFGPWNLSVLYRLCVQVGKLLEVEEKRSRRVVLFCQDDGTGQYDKIRVNTAYVLGAYLII 122
Query: 115 YLKFTPNEIYKALQANNKVPFIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFD 174
Y F+ ++ Y + + V F+ F+DAS + +Y L L + + KA + DF DFD
Sbjct: 123 YQGFSADDAYLKVSSGETVKFVGFRDASMGSPQYLLHLHDVLRGIEKALKFGWLDFSDFD 182
Query: 175 VDEMEKYERIQFGDISWIVPNKLLAFSGPNT---TEQNTCYHPPEFYLD 220
+E E YER++ GD +WI+P K+L+F GP+ E YH P+ Y D
Sbjct: 183 YEEYEFYERVENGDFNWIIPGKILSFCGPHNESREENGYPYHAPDVYFD 231
>sp|Q9P7H1|FLP1_SCHPO Tyrosine-protein phosphatase CDC14 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=clp1 PE=1 SV=1
Length = 537
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 4/191 (2%)
Query: 15 LDLFTEIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCD 74
L E +D+LY+ + + +HFF D+ +Y F+ DFGP+ +S L R+
Sbjct: 8 LGEMIEFLEDKLYYTSLSQPPKAELYPHMHFFTIDDELIYNPFYHDFGPLNVSHLIRFAV 67
Query: 75 KLKAKLNS--STLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNK 132
+ + K K I+ Y+ + + R NAA L+ CY ++ + P+ L A +
Sbjct: 68 IVHGIMGKHRQAKKSKAIVLYSSTDTRLRANAACLLACYMVLVQNWPPHLALAPL-AQAE 126
Query: 133 VPFIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWI 192
PF+ F+DA S Y + + +C +++AR+ ++ + + DV + E YER++ GD +WI
Sbjct: 127 PPFLGFRDAGYAVSDYYITIQDCVYGLWRARESSILNIRNIDVHDYETYERVENGDFNWI 186
Query: 193 VPNKLLAFSGP 203
P K +AF+ P
Sbjct: 187 SP-KFIAFASP 196
>sp|Q00684|CDC14_YEAST Tyrosine-protein phosphatase CDC14 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC14 PE=1 SV=2
Length = 551
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 102/189 (53%), Gaps = 4/189 (2%)
Query: 15 LDLFTEIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCD 74
LD E + R+Y + E T ++ FF ++ Y +F DFGP+ + LYR+
Sbjct: 7 LDNTIEFLRGRVYLGAYDYTPE--DTDELVFFTVEDAIFYNSFHLDFGPMNIGHLYRFAV 64
Query: 75 KLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVP 134
LN +K ++ Y+ + ++R NAA ++ CY I+ +TP+++ + L A P
Sbjct: 65 IFHEILNDPENANKAVVFYSSASTRQRANAACMLCCYMILVQAWTPHQVLQPL-AQVDPP 123
Query: 135 FIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVP 194
F+ F+DA N+ + + + + V++A++ L D F+++ EKYE ++FGD + + P
Sbjct: 124 FMPFRDAGYSNADFEITIQDVVYGVWRAKEKGLIDLHSFNLESYEKYEHVEFGDFNVLTP 183
Query: 195 NKLLAFSGP 203
+ +AF+ P
Sbjct: 184 D-FIAFASP 191
>sp|Q76I90|NUF2_CHICK Kinetochore protein Nuf2 OS=Gallus gallus GN=NUF2 PE=1 SV=1
Length = 469
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 9/128 (7%)
Query: 53 VYLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYA 112
VY F F P+C LY + ++ + + +I NPK + A FL G
Sbjct: 74 VYPQIFEGFLPVC--NLYIHMERFLPVCRVNDFQMSDVI-----NPKAKRTARFLSGILN 126
Query: 113 IIYLKFTPNEIYKALQANNKVPFIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDD 172
++ + E Y LQ N K Q N + ++ LE N V +Q D
Sbjct: 127 FVHFRECRREAYLELQLNYKSAMEKHQQLETANQELEMK-LEKLNTVPVEQQAEFKQLSD 185
Query: 173 FDVDEMEK 180
D+ E+E+
Sbjct: 186 -DIQELEQ 192
>sp|C4LAF1|PRMA_TOLAT Ribosomal protein L11 methyltransferase OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=prmA PE=3 SV=1
Length = 292
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 33/126 (26%)
Query: 88 KVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKV-------------- 133
++ I+ T K N +G A+ Y+ +Y+ L K+
Sbjct: 5 QIKINATAKTANKVSNMLMGLGAQAVTYMDAQDTPVYEPLPGETKLWGDTRCIGLFDAEV 64
Query: 134 ---PFIAF-QDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDI 189
P +AF Q E+ Y +ELLE D+ + ME ++ +QFG+
Sbjct: 65 DPAPIVAFFQQHFGEDVPYQVELLE---------------DKDWVREWMEHFQPMQFGER 109
Query: 190 SWIVPN 195
WI P+
Sbjct: 110 LWICPS 115
>sp|Q6E2Z6|REHY_MEDTR 1-Cys peroxiredoxin OS=Medicago truncatula PE=2 SV=1
Length = 218
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 42 KIHFFCTDETHVYLNFFGDFGPICLSTLYRYC 73
K+H FC+D + + GDF P+C + L +
Sbjct: 23 KLHHFCSDSWTILFSHPGDFTPVCTTELGKMA 54
>sp|P59680|K6PF1_YARLI 6-phosphofructokinase subunit alpha OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=PFK1 PE=2 SV=2
Length = 953
Score = 30.8 bits (68), Expect = 7.3, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 65 CLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTP 120
CL++L +YCD LK +++ L+ V+ GN+ A + G Y + +TP
Sbjct: 719 CLNSLVQYCDVLKTSASATRLRLFVVEVQGGNSGYIATVAGLITGAYVV----YTP 770
>sp|B1JKF2|PRMA_YERPY Ribosomal protein L11 methyltransferase OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=prmA
PE=3 SV=1
Length = 293
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 91 IHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKV----PFIAFQDASDENS 146
++ TGN + + G ++ + N +++ L ++ I DA + +
Sbjct: 8 LNTTGNQAESLGDVLVESGAVSVTFQDTHDNPVFEPLPGETRLWGDTDVIGLYDAETDMA 67
Query: 147 KYTLELLECFNAVFKARQHNLFDFDDFDVDE--MEKYERIQFGDISWIVPN 195
+ +LEC + K H + +D D + M+ + ++FG+ WI P+
Sbjct: 68 D-VVAMLECHPQIGKGFIHKIEQLEDKDWEREWMDNFHPMRFGERLWICPS 117
>sp|Q8ZAX6|PRMA_YERPE Ribosomal protein L11 methyltransferase OS=Yersinia pestis GN=prmA
PE=3 SV=1
Length = 293
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 91 IHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKV----PFIAFQDASDENS 146
++ TGN + + G ++ + N +++ L ++ I DA + +
Sbjct: 8 LNTTGNQAESLGDVLVESGAVSVTFQDTHDNPVFEPLPGETRLWGDTDVIGLYDAETDMA 67
Query: 147 KYTLELLECFNAVFKARQHNLFDFDDFDVDE--MEKYERIQFGDISWIVPN 195
+ +LEC + K H + +D D + M+ + ++FG+ WI P+
Sbjct: 68 D-VVAMLECHPQIGKGFIHKIEQLEDKDWEREWMDNFHPMRFGERLWICPS 117
>sp|A7FDQ3|PRMA_YERP3 Ribosomal protein L11 methyltransferase OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=prmA PE=3 SV=1
Length = 293
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 91 IHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKV----PFIAFQDASDENS 146
++ TGN + + G ++ + N +++ L ++ I DA + +
Sbjct: 8 LNTTGNQAESLGDVLVESGAVSVTFQDTHDNPVFEPLPGETRLWGDTDVIGLYDAETDMA 67
Query: 147 KYTLELLECFNAVFKARQHNLFDFDDFDVDE--MEKYERIQFGDISWIVPN 195
+ +LEC + K H + +D D + M+ + ++FG+ WI P+
Sbjct: 68 D-VVAMLECHPQIGKGFIHKIEQLEDKDWEREWMDNFHPMRFGERLWICPS 117
>sp|Q665E3|PRMA_YERPS Ribosomal protein L11 methyltransferase OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=prmA
PE=3 SV=2
Length = 293
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 91 IHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKV----PFIAFQDASDENS 146
++ TGN + + G ++ + N +++ L ++ I DA + +
Sbjct: 8 LNTTGNQAESLGDVLVESGAVSVTFQDTHDNPVFEPLPGETRLWGDTDVIGLYDAETDMA 67
Query: 147 KYTLELLECFNAVFKARQHNLFDFDDFDVDE--MEKYERIQFGDISWIVPN 195
+ +LEC + K H + +D D + M+ + ++FG+ WI P+
Sbjct: 68 D-VVAMLECHPQIGKGFIHKIEQLEDKDWEREWMDNFHPMRFGERLWICPS 117
>sp|B2K467|PRMA_YERPB Ribosomal protein L11 methyltransferase OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=prmA
PE=3 SV=1
Length = 293
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 91 IHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKV----PFIAFQDASDENS 146
++ TGN + + G ++ + N +++ L ++ I DA + +
Sbjct: 8 LNTTGNQAESLGDVLVESGAVSVTFQDTHDNPVFEPLPGETRLWGDTDVIGLYDAETDMA 67
Query: 147 KYTLELLECFNAVFKARQHNLFDFDDFDVDE--MEKYERIQFGDISWIVPN 195
+ +LEC + K H + +D D + M+ + ++FG+ WI P+
Sbjct: 68 D-VVAMLECHPQIGKGFIHKIEQLEDKDWEREWMDNFHPMRFGERLWICPS 117
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,937,539
Number of Sequences: 539616
Number of extensions: 3642486
Number of successful extensions: 7676
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7652
Number of HSP's gapped (non-prelim): 22
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)