Query psy3115
Match_columns 226
No_of_seqs 110 out of 178
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 16:49:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14671 DSPn: Dual specificit 100.0 5.2E-69 1.1E-73 443.5 12.7 141 19-162 1-141 (141)
2 KOG1720|consensus 100.0 1.7E-30 3.6E-35 226.9 2.6 88 137-224 1-92 (225)
3 PF00782 DSPc: Dual specificit 96.9 0.011 2.4E-07 46.0 9.2 64 60-130 50-113 (133)
4 PTZ00242 protein tyrosine phos 96.5 0.023 5E-07 47.8 9.1 72 54-130 66-138 (166)
5 KOG1720|consensus 96.4 0.019 4.1E-07 51.4 8.3 71 52-130 117-187 (225)
6 PTZ00393 protein tyrosine phos 96.1 0.028 6E-07 50.9 8.2 69 53-130 141-209 (241)
7 smart00195 DSPc Dual specifici 95.9 0.082 1.8E-06 41.5 9.1 57 67-130 62-118 (138)
8 COG2453 CDC14 Predicted protei 95.8 0.042 9E-07 46.4 7.5 72 50-128 72-144 (180)
9 KOG1719|consensus 95.1 0.068 1.5E-06 46.2 6.5 63 61-130 87-149 (183)
10 cd00127 DSPc Dual specificity 94.9 0.22 4.7E-06 38.7 8.3 65 59-130 56-121 (139)
11 PRK12361 hypothetical protein; 93.5 0.84 1.8E-05 44.7 11.0 69 59-135 151-220 (547)
12 KOG2283|consensus 91.0 0.19 4.1E-06 48.9 3.1 107 19-130 15-148 (434)
13 KOG1716|consensus 90.3 2.1 4.5E-05 38.8 9.0 103 18-130 74-195 (285)
14 PTZ00393 protein tyrosine phos 88.2 0.2 4.4E-06 45.4 0.9 28 172-205 75-102 (241)
15 KOG2386|consensus 82.2 1.1 2.3E-05 43.4 2.7 62 65-130 102-164 (393)
16 PF05706 CDKN3: Cyclin-depende 80.8 6.1 0.00013 34.2 6.6 59 58-124 108-168 (168)
17 TIGR01244 conserved hypothetic 66.9 64 0.0014 25.9 9.0 55 64-130 70-124 (135)
18 KOG1718|consensus 64.1 19 0.00042 31.8 5.7 64 69-137 76-140 (198)
19 smart00012 PTPc_DSPc Protein t 57.2 68 0.0015 22.8 9.6 65 60-128 12-83 (105)
20 smart00404 PTPc_motif Protein 57.2 68 0.0015 22.8 9.6 65 60-128 12-83 (105)
21 cd00047 PTPc Protein tyrosine 43.6 2E+02 0.0044 24.3 9.2 73 52-130 133-211 (231)
22 PF07920 DUF1684: Protein of u 41.9 8 0.00017 32.4 -0.1 17 134-150 72-88 (143)
23 KOG3822|consensus 41.0 8.3 0.00018 37.5 -0.2 13 187-199 404-417 (516)
24 COG2057 AtoA Acyl CoA:acetate/ 40.4 14 0.00031 33.3 1.2 14 185-198 112-126 (225)
25 PF09334 tRNA-synt_1g: tRNA sy 37.2 16 0.00035 34.8 1.0 56 61-126 11-69 (391)
26 PF00581 Rhodanese: Rhodanese- 36.5 1.2E+02 0.0026 21.9 5.4 34 85-119 65-98 (113)
27 PF14756 Pdase_C33_assoc: Pept 34.4 77 0.0017 26.5 4.5 49 117-195 94-142 (147)
28 cd00814 MetRS_core catalytic c 34.3 60 0.0013 29.6 4.3 56 61-126 12-70 (319)
29 PLN02610 probable methionyl-tR 30.3 89 0.0019 32.9 5.2 59 60-127 28-89 (801)
30 PF12993 DUF3877: Domain of un 29.3 31 0.00068 30.1 1.5 110 67-220 50-172 (175)
31 PF09454 Vps23_core: Vps23 cor 29.1 18 0.0004 26.3 0.0 20 150-169 22-41 (65)
32 COG4646 DNA methylase [Transcr 28.5 16 0.00035 36.8 -0.5 47 116-165 262-310 (637)
33 COG3077 RelB DNA-damage-induci 27.7 1.2E+02 0.0026 23.7 4.3 56 100-164 9-68 (88)
34 COG0777 AccD Acetyl-CoA carbox 26.9 31 0.00067 32.4 1.1 31 187-217 218-248 (294)
35 COG0143 MetG Methionyl-tRNA sy 26.1 58 0.0013 33.0 2.9 55 61-126 17-75 (558)
36 KOG0374|consensus 25.8 1.3E+02 0.0029 28.3 5.1 82 48-142 86-168 (331)
37 PF00102 Y_phosphatase: Protei 24.1 4.1E+02 0.0088 21.8 9.2 49 50-102 136-184 (235)
38 smart00258 SAND SAND domain. 24.0 25 0.00054 26.5 -0.1 19 184-203 28-46 (73)
39 cd01518 RHOD_YceA Member of th 23.2 1.9E+02 0.0041 21.1 4.6 15 85-99 59-73 (101)
40 PF07757 AdoMet_MTase: Predict 20.7 70 0.0015 26.1 1.9 37 95-146 29-70 (112)
41 PF03162 Y_phosphatase2: Tyros 20.5 2.3E+02 0.005 23.7 5.1 58 61-128 71-128 (164)
No 1
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=100.00 E-value=5.2e-69 Score=443.47 Aligned_cols=141 Identities=50% Similarity=0.906 Sum_probs=103.9
Q ss_pred ceeecCeEEEEEccCCCCCCCCCceEEEeeCCceeeccccCCCCCCchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCc
Q psy3115 19 TEIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNP 98 (226)
Q Consensus 19 ~eiI~dRLYf~~~~~~p~~~~~~~~~yF~iD~~l~Y~~F~~DFGPLnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~ 98 (226)
||||||||||++++.+| ++++++||||||+||+|||||+||||||||||||||++|++||++++.++|+||||||.|+
T Consensus 1 iE~i~drLyf~~~~~~p--~~~~~~~yF~iD~~l~Y~~F~~DFGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~ 78 (141)
T PF14671_consen 1 IEIIPDRLYFASLRNKP--KSTPNTHYFSIDDELVYENFYADFGPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDP 78 (141)
T ss_dssp ---SSSSEEEEE-SS------BTTEEEEE-TTTS----SSS------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-H
T ss_pred CCCCCCcEEEEEeCCCC--CCCCCcEEEEeCCeEEEecccCcCCCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCCh
Confidence 79999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCcccCCCCCCcccccHHHHHHHHHHH
Q psy3115 99 KKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAFQDASDENSKYTLELLECFNAVFKA 162 (226)
Q Consensus 99 ~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~~~~~~~~~pFRDAs~g~~~y~Lti~Dcl~Gl~kA 162 (226)
+||||||+||||||||+|||||||||+||.++ .|||+||||||+|+|+|+|||+|||+||+||
T Consensus 79 ~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~-~p~~~pFRDAs~g~~~y~Lti~Dcl~Gl~kA 141 (141)
T PF14671_consen 79 KKRANAAFLIGAYAVIYLGMSPEEAYKPLASI-QPPFMPFRDASYGPCTYDLTILDCLRGLEKA 141 (141)
T ss_dssp HHHHHHHHHHHHHHHHTS---HHHHHHHHTTT-T-----B--SSSSS-S--B-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhc-CCCCCCCCCCCCCCcCceeEHHHHHHHHhhC
Confidence 99999999999999999999999999999987 6999999999999999999999999999998
No 2
>KOG1720|consensus
Probab=99.96 E-value=1.7e-30 Score=226.91 Aligned_cols=88 Identities=38% Similarity=0.763 Sum_probs=85.8
Q ss_pred CcccCCCCCCcccccHHHHHHHHHHHHHCCCCCCCCCCHHHHHhhhhcccCCeeeeecCceeeccCCCC----CCCCccC
Q psy3115 137 AFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVPNKLLAFSGPNT----TEQNTCY 212 (226)
Q Consensus 137 pFRDAs~g~~~y~Lti~Dcl~Gl~kA~~~g~~d~~tFd~~eYe~yErveNGD~NWIvP~KflAFsgP~~----~~~Gy~~ 212 (226)
||||||||.|+|.+|++||+.|++||++.||+|+++||++|||+||+|||||+|||+|+||+||+|||. +++||+.
T Consensus 1 ~frdAsy~s~~~~it~~d~~~~~~r~~~~g~l~~~~~~~~~ye~ye~ve~gdfnwI~p~~~i~f~~p~~~s~gi~~~f~~ 80 (225)
T KOG1720|consen 1 PFRDASYGSSDFYITILDCLYGVWKALQSGWLDFSSFNVDEYEHYEAVENGDFNWIIPDRFIAFAGPHLKSRGIESGFPL 80 (225)
T ss_pred CCCCcccccccccceecchHHHHHHHHhccccchheecchhheeeeccCCCCcceeccchhhhhcCccccccchhhcccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999998 6799999
Q ss_pred CCcccccccccC
Q psy3115 213 HPPEFYLDKVSI 224 (226)
Q Consensus 213 ~~Pe~Yi~~F~~ 224 (226)
|+|+.|++||+.
T Consensus 81 ~~~~~~~~~~~~ 92 (225)
T KOG1720|consen 81 HLPQPYIQYFKN 92 (225)
T ss_pred cCChhHHHHhhh
Confidence 999999999973
No 3
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=96.85 E-value=0.011 Score=46.00 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=50.5
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q psy3115 60 DFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (226)
Q Consensus 60 DFGPLnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~~~ 130 (226)
+.+.....++-+.+..+++..++ .++.+|||...-. -++++++||+|...|||+++|++.++..
T Consensus 50 ~~~~~~~~~~~~~~~~i~~~~~~---~~~VlVHC~~G~~----RS~~v~~ayLm~~~~~~~~~A~~~v~~~ 113 (133)
T PF00782_consen 50 DPEEPILEHLDQAVEFIENAISE---GGKVLVHCKAGLS----RSGAVAAAYLMKKNGMSLEEAIEYVRSR 113 (133)
T ss_dssp STTSHGGGGHHHHHHHHHHHHHT---TSEEEEEESSSSS----HHHHHHHHHHHHHHTSSHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHhhhhhhcc---cceeEEEeCCCcc----cchHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46666677888888888877543 5678888875433 3788999999999999999999999876
No 4
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=96.46 E-value=0.023 Score=47.76 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=55.8
Q ss_pred eccccCCCCCCchhHHHHHHHHHHHHhcCCc-CCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q psy3115 54 YLNFFGDFGPICLSTLYRYCDKLKAKLNSST-LKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (226)
Q Consensus 54 Y~~F~~DFGPLnL~~lyrfc~~l~~~L~~~~-~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~~~ 130 (226)
..| +.|++|.+...+-.|+..+++.++... ..++.+|||...-. -++.+++||+|-..|++++||++.+...
T Consensus 66 ~~p-~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGig----RSgt~~a~yL~~~~~~s~~eAi~~vr~~ 138 (166)
T PTZ00242 66 DWP-FDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLG----RAPILVALALVEYGGMEPLDAVGFVREK 138 (166)
T ss_pred ecC-CCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344 369999999999999999998886522 24556677765433 3678999999988889999999999876
No 5
>KOG1720|consensus
Probab=96.37 E-value=0.019 Score=51.38 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=60.0
Q ss_pred eeeccccCCCCCCchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q psy3115 52 HVYLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (226)
Q Consensus 52 l~Y~~F~~DFGPLnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~~~ 130 (226)
..|+=||.||++..++.+=+|...+++-++ .+|.-|||-..--+ .-+|||||+|-..|+||.||..-+...
T Consensus 117 ~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~----~g~iaVHCkaGlGR----TG~liAc~lmy~~g~ta~eaI~~lR~~ 187 (225)
T KOG1720|consen 117 DHHDLFFADGSTPTDAIVKEFVKIVENAEK----GGKIAVHCKAGLGR----TGTLIACYLMYEYGMTAGEAIAWLRIC 187 (225)
T ss_pred eeeeeecCCCCCCCHHHHHHHHHHHHHHHh----cCeEEEEeccCCCc----hhHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 367889999999999999999999999876 56888998754443 468999999999999999998877643
No 6
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=96.13 E-value=0.028 Score=50.86 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=55.0
Q ss_pred eeccccCCCCCCchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q psy3115 53 VYLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (226)
Q Consensus 53 ~Y~~F~~DFGPLnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~~~ 130 (226)
.+.| +.|+++.+..++-+|+..+++.++. .+..+|||...-.+ +.+|++||+|- .|++|+||++.+...
T Consensus 141 ~~lp-ipDg~aPs~~~i~~~l~~i~~~l~~---g~~VaVHC~AGlGR----TGtl~AayLI~-~GmspeeAI~~VR~~ 209 (241)
T PTZ00393 141 HELI-FPDGDAPTVDIVSNWLTIVNNVIKN---NRAVAVHCVAGLGR----APVLASIVLIE-FGMDPIDAIVFIRDR 209 (241)
T ss_pred EEee-cCCCCCCCHHHHHHHHHHHHHHHhc---CCeEEEECCCCCCH----HHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 3344 4699999999999999999988753 45677888765433 57889999885 899999999999876
No 7
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=95.89 E-value=0.082 Score=41.52 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q psy3115 67 STLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (226)
Q Consensus 67 ~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~~~ 130 (226)
..+-.-+..+++..+ ..++.+|||.+.-. -++.+++||+|...|||+++|++-+...
T Consensus 62 ~~~~~~~~~i~~~~~---~~~~VlVHC~~G~~----RS~~v~~~yl~~~~~~~~~~A~~~v~~~ 118 (138)
T smart00195 62 PYFPEAVEFIEDAEK---KGGKVLVHCQAGVS----RSATLIIAYLMKYRNLSLNDAYDFVKDR 118 (138)
T ss_pred HHHHHHHHHHHHHhc---CCCeEEEECCCCCc----hHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 333333444444433 23456666665433 3688899999999999999999999876
No 8
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.80 E-value=0.042 Score=46.44 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=53.8
Q ss_pred CceeeccccCCCCCCchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHh-CCCHHHHHHHHH
Q psy3115 50 ETHVYLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYL-KFTPNEIYKALQ 128 (226)
Q Consensus 50 ~~l~Y~~F~~DFGPLnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l-~~sp~~a~~~~~ 128 (226)
..-++.-=..|+++.++..+-+....|++.++. .+|.+|||-+.-.+ +++|+++|+|+++ .++++++..-..
T Consensus 72 ~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~---g~kVvVHC~~GigR----SgtviaA~lm~~~~~~~~~~~i~~~~ 144 (180)
T COG2453 72 GIQVLHLPILDGTVPDLEDLDKIVDFIEEALSK---GKKVVVHCQGGIGR----SGTVIAAYLMLYGGLSLADEAIAVKR 144 (180)
T ss_pred CceeeeeeecCCCCCcHHHHHHHHHHHHHHHhc---CCeEEEEcCCCCch----HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334444456899999999999999999998876 33888888866544 7999999999995 555666555444
No 9
>KOG1719|consensus
Probab=95.13 E-value=0.068 Score=46.21 Aligned_cols=63 Identities=17% Similarity=0.331 Sum_probs=45.6
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q psy3115 61 FGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (226)
Q Consensus 61 FGPLnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~~~ 130 (226)
+|-.++..|. +-++-+++...+.+-.-|||-. -|+-+|.+++||+|-..+|||++|++-+.+.
T Consensus 87 ~~~Ps~~~i~---~aVeFi~k~asLGktvYVHCKA----GRtRSaTvV~cYLmq~~~wtpe~A~~~vr~i 149 (183)
T KOG1719|consen 87 TGAPSLENIQ---KAVEFIHKNASLGKTVYVHCKA----GRTRSATVVACYLMQHKNWTPEAAVEHVRKI 149 (183)
T ss_pred cCCCCHHHHH---HHHHHHHhccccCCeEEEEecC----CCccchhhhhhhhhhhcCCCHHHHHHHHHhc
Confidence 4666666664 4455555555555555566643 3677899999999999999999999999876
No 10
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=94.86 E-value=0.22 Score=38.69 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=41.2
Q ss_pred CCCCCCchhH-HHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q psy3115 59 GDFGPICLST-LYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (226)
Q Consensus 59 ~DFGPLnL~~-lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~~~ 130 (226)
.|.+.-.+.. +-..+..++...++ .++.+|||...-.+ ++.++++|++...+|++++|++-+...
T Consensus 56 ~D~~~~~~~~~~~~~~~~i~~~~~~---~~~vlVHC~~G~~R----s~~~~~~~l~~~~~~~~~~a~~~vr~~ 121 (139)
T cd00127 56 LDLPSQDISKYFDEAVDFIDDAREK---GGKVLVHCLAGVSR----SATLVIAYLMKTLGLSLREAYEFVKSR 121 (139)
T ss_pred eeCCCCChHHHHHHHHHHHHHHHhc---CCcEEEECCCCCch----hHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3444334432 33444445554443 34566666544332 566778999999999999999999876
No 11
>PRK12361 hypothetical protein; Provisional
Probab=93.45 E-value=0.84 Score=44.69 Aligned_cols=69 Identities=12% Similarity=0.205 Sum_probs=52.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHH-hCCCHHHHHHHHHhcCCCCC
Q psy3115 59 GDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIY-LKFTPNEIYKALQANNKVPF 135 (226)
Q Consensus 59 ~DFGPLnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~-l~~sp~~a~~~~~~~~~~~~ 135 (226)
.|..+.++.++-+-+.-+++.++. .++.+|||..-- .-+|.+++||+|.. .++|++||++.+... .|..
T Consensus 151 ~D~~~p~~~~l~~a~~~i~~~~~~---~~~VlVHC~~G~----sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~-Rp~v 220 (547)
T PRK12361 151 LDHSVPTLAQLNQAINWIHRQVRA---NKSVVVHCALGR----GRSVLVLAAYLLCKDPDLTVEEVLQQIKQI-RKTA 220 (547)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHC---CCeEEEECCCCC----CcHHHHHHHHHHHhccCCCHHHHHHHHHHH-CCCC
Confidence 466666889998888888887664 456777777543 34788999999977 589999999999876 4443
No 12
>KOG2283|consensus
Probab=90.95 E-value=0.19 Score=48.86 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=73.2
Q ss_pred ceeecCeEEEEEccCCCCC---C-------------CCCceEEEeeCCceeec----------cccCCCCCCchhHHHHH
Q psy3115 19 TEIQKDRLYFATFKSNRER---P-------------TTTKIHFFCTDETHVYL----------NFFGDFGPICLSTLYRY 72 (226)
Q Consensus 19 ~eiI~dRLYf~~~~~~p~~---~-------------~~~~~~yF~iD~~l~Y~----------~F~~DFGPLnL~~lyrf 72 (226)
+..|.+||-.+++-....+ + --.+.-.|++=.|-.|. ==+.|-+|.+|-+|..|
T Consensus 15 ltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L~~l~~~ 94 (434)
T KOG2283|consen 15 LTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPLELLCPF 94 (434)
T ss_pred ceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCccccccceeecCCCCCCCCcHHHHHHH
Confidence 6788889888887643310 1 11333445554222232 12689999999999999
Q ss_pred HHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCC-CHHHHHHHHHhc
Q psy3115 73 CDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKF-TPNEIYKALQAN 130 (226)
Q Consensus 73 c~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~-sp~~a~~~~~~~ 130 (226)
|+.++.-|+.. -++-.|||| ... |+-++.+||||++-..-. ||+||+..+...
T Consensus 95 c~~~~~WL~~d-~~nVvvvHC--k~G--kgrtg~~icA~L~~~~~~~ta~eald~~~~k 148 (434)
T KOG2283|consen 95 CKSMDNWLSED-PKNVVVVHC--KAG--KGRTGVMICAYLIYSGISATAEEALDYFNEK 148 (434)
T ss_pred HHCHHHHHhcC-ccceEEEEc--cCC--CcceEEEEeHHHHhhhhcCCHHHHHHHHhhh
Confidence 99999999863 245566666 333 444688999999888655 599999988754
No 13
>KOG1716|consensus
Probab=90.34 E-value=2.1 Score=38.80 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=63.7
Q ss_pred cceeecCeEEEEEccC---CCCCCCCCceEEEeeCCc-----eeecccc-------CCCCCCchhH----HHHHHHHHHH
Q psy3115 18 FTEIQKDRLYFATFKS---NRERPTTTKIHFFCTDET-----HVYLNFF-------GDFGPICLST----LYRYCDKLKA 78 (226)
Q Consensus 18 ~~eiI~dRLYf~~~~~---~p~~~~~~~~~yF~iD~~-----l~Y~~F~-------~DFGPLnL~~----lyrfc~~l~~ 78 (226)
-+..|...||+.+... .+..+...-+|-.++..+ +...+.+ .|..-.||.+ .++|.....+
T Consensus 74 ~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~ 153 (285)
T KOG1716|consen 74 PIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKARE 153 (285)
T ss_pred CceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHHh
Confidence 4677888999998872 221111122333333221 1222222 4677777776 3333333333
Q ss_pred HhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q psy3115 79 KLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (226)
Q Consensus 79 ~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~~~ 130 (226)
..++.+|||...-.+ +|.++.||+|.+.||+-++||+.+...
T Consensus 154 ------~~~~vlVHC~~GvSR----Sat~viAYlM~~~~~~l~~A~~~vk~~ 195 (285)
T KOG1716|consen 154 ------KGGKVLVHCQAGVSR----SATLVIAYLMKYEGLSLEDAYELVKSR 195 (285)
T ss_pred ------CCCeEEEEcCCccch----hHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 267888888755433 789999999999999999999998865
No 14
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=88.17 E-value=0.2 Score=45.37 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=25.0
Q ss_pred CCCHHHHHhhhhcccCCeeeeecCceeeccCCCC
Q psy3115 172 DFDVDEMEKYERIQFGDISWIVPNKLLAFSGPNT 205 (226)
Q Consensus 172 tFd~~eYe~yErveNGD~NWIvP~KflAFsgP~~ 205 (226)
|.=.++|+++++||+|+| |||+|.+|++
T Consensus 75 ~~~~~~~~~~~~ie~~~~------rfLi~~~P~~ 102 (241)
T PTZ00393 75 DYLNPVLNHPTKIEHGKI------KILILDAPTN 102 (241)
T ss_pred cccchhcccchhhccCce------eEEEeCCCCH
Confidence 344689999999999999 8999999987
No 15
>KOG2386|consensus
Probab=82.15 E-value=1.1 Score=43.37 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=48.0
Q ss_pred chhHHHHHHHHHHHHhcCCcCCCc-eEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q psy3115 65 CLSTLYRYCDKLKAKLNSSTLKHK-VIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (226)
Q Consensus 65 nL~~lyrfc~~l~~~L~~~~~~~k-~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~~~ 130 (226)
..-++-.|...+++...+....++ ..||||. ...|+ =+|||+|++...+||..+|.+.|+.+
T Consensus 102 ~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcth--G~Nrt--gyLI~~yL~~~~~~s~~~aik~f~~~ 164 (393)
T KOG2386|consen 102 RTELVDKFVKLVKGFVDDTKLDDELIGVHCTH--GLNRT--GYLICAYLADVGGYSSSEAIKRFADA 164 (393)
T ss_pred CccchHHHHHHHHHHHhcccCCCCEEEEeCCC--ccccc--ceeeeeeeeeccCccHHHHHHHHHHh
Confidence 445677888888888776555555 5567776 44443 48999999999999999999999977
No 16
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=80.83 E-value=6.1 Score=34.15 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=35.4
Q ss_pred cCCCCCCchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhC--CCHHHHH
Q psy3115 58 FGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLK--FTPNEIY 124 (226)
Q Consensus 58 ~~DFGPLnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~--~sp~~a~ 124 (226)
..|.|...++........|...|++ .+|.+|||=+---+ +-||+|=+++.|+ ++|++|.
T Consensus 108 I~D~~aPd~~~~~~i~~eL~~~L~~---g~~V~vHC~GGlGR-----tGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 108 IPDGSAPDFAAAWQILEELAARLEN---GRKVLVHCRGGLGR-----TGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp --TTS---HHHHHHHHHHHHHHHHT---T--EEEE-SSSSSH-----HHHHHHHHHHHH-SSS-HHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHc---CCEEEEECCCCCCH-----HHHHHHHHHHHHcCCCChhhcC
Confidence 5789988998888888888888886 56788888766544 3344444555555 8999984
No 17
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=66.94 E-value=64 Score=25.89 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=33.5
Q ss_pred CchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q psy3115 64 ICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQAN 130 (226)
Q Consensus 64 LnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~~~ 130 (226)
++-..+-.|.+.+++ ..++|+++|.+.. | ++.|.+.+. ..+|++.+++.+.-...
T Consensus 70 ~~~~~v~~f~~~~~~-------~~~pvL~HC~sG~--R--t~~l~al~~-~~~g~~~~~i~~~~~~~ 124 (135)
T TIGR01244 70 ITPDDVETFRAAIGA-------AEGPVLAYCRSGT--R--SSLLWGFRQ-AAEGVPVEEIVRRAQAA 124 (135)
T ss_pred CCHHHHHHHHHHHHh-------CCCCEEEEcCCCh--H--HHHHHHHHH-HHcCCCHHHHHHHHHHc
Confidence 455666666666652 2355666664444 5 444444443 45899999999877644
No 18
>KOG1718|consensus
Probab=64.14 E-value=19 Score=31.78 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCC-cCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCC
Q psy3115 69 LYRYCDKLKAKLNSS-TLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIA 137 (226)
Q Consensus 69 lyrfc~~l~~~L~~~-~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~~~~~~~~~p 137 (226)
||.|-..+..+.++. ...+|.+|||...-.+ +|-|+-+|+|=+.+||-.|||+-.++. .|-..|
T Consensus 76 l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSR----SAsLClAYLmK~~~msLreAy~~vKa~-RpiIRP 140 (198)
T KOG1718|consen 76 LYDHFDPVADKIHSVIMRGGKTLVHCVAGVSR----SASLCLAYLMKYHCMSLREAYHWVKAR-RPIIRP 140 (198)
T ss_pred hhhhhhHHHHHHHHHHhcCCcEEEEEccccch----hHHHHHHHHHHHccchHHHHHHHHHhh-CceeCC
Confidence 344444444444333 2378999999865432 567788999999999999999988765 444443
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=57.16 E-value=68 Score=22.82 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=40.3
Q ss_pred CCC-CCchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhC------CCHHHHHHHHH
Q psy3115 60 DFG-PICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLK------FTPNEIYKALQ 128 (226)
Q Consensus 60 DFG-PLnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~------~sp~~a~~~~~ 128 (226)
|.| |-+-..+.+|+..+++..+.....+..+|||+..-. | ++.++++|+++... .+..++.+.+.
T Consensus 12 d~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~g--R--tg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 12 DHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVG--R--TGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCC--h--hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 445 666688999999999987754445667777764433 3 34556677666543 24445554444
No 20
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=57.16 E-value=68 Score=22.82 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=40.3
Q ss_pred CCC-CCchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhC------CCHHHHHHHHH
Q psy3115 60 DFG-PICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLK------FTPNEIYKALQ 128 (226)
Q Consensus 60 DFG-PLnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~------~sp~~a~~~~~ 128 (226)
|.| |-+-..+.+|+..+++..+.....+..+|||+..-. | ++.++++|+++... .+..++.+.+.
T Consensus 12 d~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~g--R--tg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 12 DHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVG--R--TGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCC--h--hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 445 666688999999999987754445667777764433 3 34556677666543 24445554444
No 21
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=43.58 E-value=2e+02 Score=24.31 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=43.6
Q ss_pred eeeccccCCCC-CCchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHh-----CCCHHHHHH
Q psy3115 52 HVYLNFFGDFG-PICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYL-----KFTPNEIYK 125 (226)
Q Consensus 52 l~Y~~F~~DFG-PLnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l-----~~sp~~a~~ 125 (226)
+.|.+. .|+| |-+...+.+|+..+++..+. ...+..||||...-.+ |+.+++++.++.. ..++.+|.+
T Consensus 133 ~~~~~W-~d~~~p~~~~~~~~~~~~v~~~~~~-~~~~pivVHC~~G~gR----sg~~~a~~~~~~~~~~~~~~~~~~~v~ 206 (231)
T cd00047 133 FQYTGW-PDHGVPESPDSLLDLLRKVRKSQQQ-PGSGPIVVHCSAGVGR----TGTFIAIDILLQRLEAEGVVDIFQTVK 206 (231)
T ss_pred EeECCC-CCCCccCChHHHHHHHHHHHHHhcc-CCCCCeEEECCCCCCc----cchHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 345443 4666 66668888999999887643 2244566666644333 3344444444332 467777777
Q ss_pred HHHhc
Q psy3115 126 ALQAN 130 (226)
Q Consensus 126 ~~~~~ 130 (226)
.+..+
T Consensus 207 ~iR~~ 211 (231)
T cd00047 207 ELRSQ 211 (231)
T ss_pred HHHhc
Confidence 77654
No 22
>PF07920 DUF1684: Protein of unknown function (DUF1684); InterPro: IPR012467 The sequences featured in this family are found in hypothetical archaeal and bacterial proteins of unknown function. The region in question is approximately 200 amino acids long. ; PDB: 2LOK_A 4DLH_A 2LNU_A.
Probab=41.93 E-value=8 Score=32.41 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=13.8
Q ss_pred CCCCcccCCCCCCcccc
Q psy3115 134 PFIAFQDASDENSKYTL 150 (226)
Q Consensus 134 ~~~pFRDAs~g~~~y~L 150 (226)
-|+||||++.|.-||.-
T Consensus 72 lfl~F~D~TsG~eTYg~ 88 (143)
T PF07920_consen 72 LFLPFRDATSGKETYGG 88 (143)
T ss_dssp EEEEEEECCCCTTC-TT
T ss_pred EEEEEEeCCCCCcccCC
Confidence 47999999999999853
No 23
>KOG3822|consensus
Probab=41.03 E-value=8.3 Score=37.48 Aligned_cols=13 Identities=46% Similarity=1.316 Sum_probs=11.1
Q ss_pred CCe-eeeecCceee
Q psy3115 187 GDI-SWIVPNKLLA 199 (226)
Q Consensus 187 GD~-NWIvP~KflA 199 (226)
||| ||+||+|.+-
T Consensus 404 GDLANWMIPGKlVK 417 (516)
T KOG3822|consen 404 GDLANWMIPGKLVK 417 (516)
T ss_pred cchhhhcccchhhc
Confidence 776 9999999874
No 24
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=40.43 E-value=14 Score=33.32 Aligned_cols=14 Identities=29% Similarity=1.305 Sum_probs=11.3
Q ss_pred ccCCe-eeeecCcee
Q psy3115 185 QFGDI-SWIVPNKLL 198 (226)
Q Consensus 185 eNGD~-NWIvP~Kfl 198 (226)
|+||+ ||+||+|-+
T Consensus 112 ~~Gnlanw~Ipgk~v 126 (225)
T COG2057 112 EYGNLANWMIPGKMV 126 (225)
T ss_pred ccCceeeeeECCccc
Confidence 56898 699999765
No 25
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=37.18 E-value=16 Score=34.76 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=32.5
Q ss_pred CCCCchhHHHHHHHHHHHHhcCC-cCCCceEEEEcCCCcc--hhhhHHHHHHHHHHHHhCCCHHHHHHH
Q psy3115 61 FGPICLSTLYRYCDKLKAKLNSS-TLKHKVIIHYTGNNPK--KRLNAAFLIGCYAIIYLKFTPNEIYKA 126 (226)
Q Consensus 61 FGPLnL~~lyrfc~~l~~~L~~~-~~~~k~Iv~yts~d~~--kRaNAa~Li~~y~vi~l~~sp~~a~~~ 126 (226)
-|+|+|||+|-| .+-..+... +.+++.|+|.|++|.+ +-..+|- .+|++|++-...
T Consensus 11 Ng~lHlGH~~~~--l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~--------~~g~~p~~~~~~ 69 (391)
T PF09334_consen 11 NGDLHLGHLYPY--LAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAE--------KQGIDPEEFCDK 69 (391)
T ss_dssp SSS-BHHHHHHH--HHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHH--------HTTS-HHHHHHH
T ss_pred CCCCCCChhHHH--HHHHHHHHHHhhcccceeeEEecchhhHHHHHHHH--------HcCCCHHHHHHH
Confidence 599999999844 332322211 2368899999998755 3333332 579999965433
No 26
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=36.46 E-value=1.2e+02 Score=21.86 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=19.0
Q ss_pred CCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCC
Q psy3115 85 LKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFT 119 (226)
Q Consensus 85 ~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~s 119 (226)
.+++.||+||+... ...+++-++..+.+-.+|.+
T Consensus 65 ~~~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 65 DKDKDIVFYCSSGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp TTTSEEEEEESSSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred cccccceeeeeccc-ccchhHHHHHHHHHHHcCCC
Confidence 46778899984333 33344444455555445654
No 27
>PF14756 Pdase_C33_assoc: Peptidase_C33-associated domain
Probab=34.40 E-value=77 Score=26.51 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHhcCCCCCCCcccCCCCCCcccccHHHHHHHHHHHHHCCCCCCCCCCHHHHHhhhhcccCCeeeeecC
Q psy3115 117 KFTPNEIYKALQANNKVPFIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVPN 195 (226)
Q Consensus 117 ~~sp~~a~~~~~~~~~~~~~pFRDAs~g~~~y~Lti~Dcl~Gl~kA~~~g~~d~~tFd~~eYe~yErveNGD~NWIvP~ 195 (226)
+-||||+-..+... .|+| .++.+||.-|+||.--+-.| .. -|+|-+.||
T Consensus 94 r~tpeeva~kidqY-------lrgA--------~sleEClarlEra~pPsa~d-Ts--------------FDWnvVlPG 142 (147)
T PF14756_consen 94 RATPEEVAAKIDQY-------LRGA--------TSLEECLARLERARPPSAAD-TS--------------FDWNVVLPG 142 (147)
T ss_pred CCCHHHHHHHHHHH-------Hhcc--------ccHHHHHHHHhccCCCcccc-cc--------------ccceeeccc
Confidence 45999999888765 6777 45999999999998887776 22 366777776
No 28
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=34.28 E-value=60 Score=29.56 Aligned_cols=56 Identities=21% Similarity=0.187 Sum_probs=36.4
Q ss_pred CCCCchhHHHHHHHHHHHHhcC-CcCCCceEEEEcCCCcc--hhhhHHHHHHHHHHHHhCCCHHHHHHH
Q psy3115 61 FGPICLSTLYRYCDKLKAKLNS-STLKHKVIIHYTGNNPK--KRLNAAFLIGCYAIIYLKFTPNEIYKA 126 (226)
Q Consensus 61 FGPLnL~~lyrfc~~l~~~L~~-~~~~~k~Iv~yts~d~~--kRaNAa~Li~~y~vi~l~~sp~~a~~~ 126 (226)
-|+++|||++.+... ..+.. -..++..|.+.++.|.+ +-.++| ..+|++|++..+.
T Consensus 12 ng~~HlGH~~~~~~~--Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a--------~~~g~~~~e~~~~ 70 (319)
T cd00814 12 NGVPHLGHLYGTVLA--DVFARYQRLRGYDVLFVTGTDEHGTKIEQKA--------EEEGVTPQELCDK 70 (319)
T ss_pred CCCcchhhHHHHHHH--HHHHHHHHhCCCcccccCccCCCCcHHHHHH--------HHcCCCHHHHHHH
Confidence 599999999886544 33322 23568899999988754 323333 3568899876543
No 29
>PLN02610 probable methionyl-tRNA synthetase
Probab=30.33 E-value=89 Score=32.87 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=39.6
Q ss_pred CCCCCchhHHHH-HH--HHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHH
Q psy3115 60 DFGPICLSTLYR-YC--DKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKAL 127 (226)
Q Consensus 60 DFGPLnL~~lyr-fc--~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~ 127 (226)
=-||++|||+|- +. ..+..-++ +.+..|+|.|++|.+--.... .....|.+|+|-....
T Consensus 28 ~Ng~~HlGH~~~~~l~aDv~aRy~r---~~G~~v~f~~GtDehG~~i~~------~A~~~g~~p~e~~d~~ 89 (801)
T PLN02610 28 VNNVPHLGNIIGCVLSADVFARYCR---LRGYNAIYICGTDEYGTATET------KALEENCTPKEICDKY 89 (801)
T ss_pred CCCCcccchhhhhHHHHHHHHHHHH---hCCCceEecccccCCcHHHHH------HHHHcCCCHHHHHHHH
Confidence 479999999994 44 34444333 368899999999866544222 1256799999765443
No 30
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=29.30 E-value=31 Score=30.12 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHhcCCc--CCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCcccCCCC
Q psy3115 67 STLYRYCDKLKAKLNSST--LKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAFQDASDE 144 (226)
Q Consensus 67 ~~lyrfc~~l~~~L~~~~--~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~~~~~~~~~pFRDAs~g 144 (226)
.-|..|+..+...|.+.+ .++.+.++.-...... -+.-++.+.+=++-|...
T Consensus 50 ~~L~~f~~~~~~~lG~v~vs~k~eRFCf~IP~~g~~------------YVhe~~~~~eFik~lIe~-------------- 103 (175)
T PF12993_consen 50 EALEEFPEYVKDRLGEVEVSHKGERFCFHIPEEGSE------------YVHEHTKENEFIKELIEL-------------- 103 (175)
T ss_pred HHHHHhHHHHHhhhccEEEEecCcEEEEEcCcHHHH------------HHHhcCCCCHHHHHHHHH--------------
Confidence 447789999999987654 4566777776543210 011233333333333322
Q ss_pred CCcccccHHHHHHHHHHHHHCCCCCCCCCCHHHHHhhhhcccCCeeeeecCceeecc-CCCC-------CCCC---ccCC
Q psy3115 145 NSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVPNKLLAFS-GPNT-------TEQN---TCYH 213 (226)
Q Consensus 145 ~~~y~Lti~Dcl~Gl~kA~~~g~~d~~tFd~~eYe~yErveNGD~NWIvP~KflAFs-gP~~-------~~~G---y~~~ 213 (226)
.+.-.+|+.|++.-..+=-+ =-+-|+++||+|.|+| -|. |+-+ .+.+ |+.+
T Consensus 104 v~~hgcT~e~I~~~F~~ys~-------------~~~~e~~~~~eFD~~i-----~Fed~~~D~YyYC~k~Eg~HiiYHRF 165 (175)
T PF12993_consen 104 VGKHGCTLEDILELFHKYSD-------------NVHCEEMDNGEFDYLI-----YFEDGNPDPYYYCFKDEGCHIIYHRF 165 (175)
T ss_pred HhcCCcCHHHHHHHHHHhcC-------------CeEEEeecCCCCCEEE-----EecCCCCCceEEEEEecCCcEEEeeC
Confidence 23345666666655542111 0123889999999975 466 3323 2333 8899
Q ss_pred Ccccccc
Q psy3115 214 PPEFYLD 220 (226)
Q Consensus 214 ~Pe~Yi~ 220 (226)
+||||-+
T Consensus 166 lpEDY~d 172 (175)
T PF12993_consen 166 LPEDYED 172 (175)
T ss_pred CHhhHhh
Confidence 9999964
No 31
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.12 E-value=18 Score=26.33 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHHHHHCCCCC
Q psy3115 150 LELLECFNAVFKARQHNLFD 169 (226)
Q Consensus 150 Lti~Dcl~Gl~kA~~~g~~d 169 (226)
..|.|+++.|.+|.+.|-++
T Consensus 22 ~AieDtiy~L~~al~~g~I~ 41 (65)
T PF09454_consen 22 HAIEDTIYYLDRALQRGSID 41 (65)
T ss_dssp HHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 56899999999999999875
No 32
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=28.47 E-value=16 Score=36.85 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=28.4
Q ss_pred hCCCHHHHHHHHHhcCCCCCCCcccCCCCCCcc--cccHHHHHHHHHHHHHC
Q psy3115 116 LKFTPNEIYKALQANNKVPFIAFQDASDENSKY--TLELLECFNAVFKARQH 165 (226)
Q Consensus 116 l~~sp~~a~~~~~~~~~~~~~pFRDAs~g~~~y--~Lti~Dcl~Gl~kA~~~ 165 (226)
+...+|++.+-|... -|.-=.|+|+-.++= +..+.|=|+.+.-|..+
T Consensus 262 lh~d~edvi~ELg~a---IfrDp~dGsw~~AdaYLSG~Vr~KLK~akaAa~l 310 (637)
T COG4646 262 LHGDVEDVIDELGDA---IFRDPEDGSWHTADAYLSGQVRDKLKAAKAAAAL 310 (637)
T ss_pred hcCCHHHHHHHHHHH---HhcCccCCceEehhhhhhhhHHHHHHHHHHHhcc
Confidence 455688888777532 222223355443332 34688899988888765
No 33
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=27.66 E-value=1.2e+02 Score=23.70 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=40.4
Q ss_pred hhhhHHHHHHHHHHHH-hCCCHHHHHHHHHhcCCCCCCCcccCCCCCCcccccHH---HHHHHHHHHHH
Q psy3115 100 KRLNAAFLIGCYAIIY-LKFTPNEIYKALQANNKVPFIAFQDASDENSKYTLELL---ECFNAVFKARQ 164 (226)
Q Consensus 100 kRaNAa~Li~~y~vi~-l~~sp~~a~~~~~~~~~~~~~pFRDAs~g~~~y~Lti~---Dcl~Gl~kA~~ 164 (226)
-|...-+..-+|.|+- +|+|+.+|.+.|... =|..|.=+|++++. .-+++++.+.+
T Consensus 9 ~RiD~~vK~eA~~Vl~~mGlt~S~airm~L~~---------va~~~~lPfdl~~p~N~~tl~ai~e~~~ 68 (88)
T COG3077 9 ARIDDEVKEEATAVLEEMGLTISDAIRMFLTK---------VAREGALPFDLRLPSNAETLQAIKELDK 68 (88)
T ss_pred heecHHHHHHHHHHHHHhCCCHHHHHHHHHHH---------HHHcCCCCccccCcccHHHHHHHHHHHh
Confidence 4555566677888886 699999999998643 34445556677776 67788888875
No 34
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=26.89 E-value=31 Score=32.38 Aligned_cols=31 Identities=39% Similarity=0.554 Sum_probs=26.7
Q ss_pred CCeeeeecCceeeccCCCCCCCCccCCCccc
Q psy3115 187 GDISWIVPNKLLAFSGPNTTEQNTCYHPPEF 217 (226)
Q Consensus 187 GD~NWIvP~KflAFsgP~~~~~Gy~~~~Pe~ 217 (226)
||++-==|+-.|.|+||.-+++-.+---||+
T Consensus 218 GDi~iAEP~AlIGFAGpRVIEQTire~LPeg 248 (294)
T COG0777 218 GDIIIAEPGALIGFAGPRVIEQTIREKLPEG 248 (294)
T ss_pred cCeeecCcccccccCcchhhhhhhcccCCcc
Confidence 9999999999999999998777666666765
No 35
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.06 E-value=58 Score=32.96 Aligned_cols=55 Identities=25% Similarity=0.300 Sum_probs=35.6
Q ss_pred CCCCchhHHHHHHH--HHHHHhcCCcCCCceEEEEcCCCcchhh--hHHHHHHHHHHHHhCCCHHHHHHH
Q psy3115 61 FGPICLSTLYRYCD--KLKAKLNSSTLKHKVIIHYTGNNPKKRL--NAAFLIGCYAIIYLKFTPNEIYKA 126 (226)
Q Consensus 61 FGPLnL~~lyrfc~--~l~~~L~~~~~~~k~Iv~yts~d~~kRa--NAa~Li~~y~vi~l~~sp~~a~~~ 126 (226)
-||++|||+|-+.. .+..-+ .+++.-++|.|++|.|--. -+| ..+|.||++-...
T Consensus 17 Ng~~HlGH~~~~l~ADv~aRy~---Rl~G~~v~fvtGtDeHGt~I~~~A--------~~~g~tP~el~d~ 75 (558)
T COG0143 17 NGPPHLGHLYTYLAADVYARYL---RLRGYEVFFLTGTDEHGTKIELKA--------EKEGITPQELVDK 75 (558)
T ss_pred CCCcchhhHHHHHHHHHHHHHH---HhcCCeEEEEeccCCCCCHHHHHH--------HHcCCCHHHHHHH
Confidence 59999999985432 222222 2467889999999866432 111 3469999976443
No 36
>KOG0374|consensus
Probab=25.78 E-value=1.3e+02 Score=28.34 Aligned_cols=82 Identities=21% Similarity=0.337 Sum_probs=59.8
Q ss_pred eCCceeeccccCCCCCCchhHH-HHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHH
Q psy3115 48 TDETHVYLNFFGDFGPICLSTL-YRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKA 126 (226)
Q Consensus 48 iD~~l~Y~~F~~DFGPLnL~~l-yrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~ 126 (226)
.|..++...=|-|.|+-+|.+| -.||.++. -..+++...+.+.-.-.|..+ |.|-.+..++++...|+.
T Consensus 86 p~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~--------yp~~~~lLRGNHE~~~in~~y--GFydE~~rr~~~~~~w~~ 155 (331)
T KOG0374|consen 86 PDQNYVFLGDYVDRGKQSLETICLLFALKIK--------YPENVFLLRGNHECASINRIY--GFYDECKRRYGEIKLWKA 155 (331)
T ss_pred CcccEEEecccccCCccceEEeehhhhhhhh--------CCceEEEecccccccccccee--eeHHHHHHhcchHHHHHH
Confidence 5667777888999999999986 34444433 346899999998888888444 888888888888888888
Q ss_pred HHhcCCCCCCCcccCC
Q psy3115 127 LQANNKVPFIAFQDAS 142 (226)
Q Consensus 127 ~~~~~~~~~~pFRDAs 142 (226)
|+.. -..+|. .|.
T Consensus 156 F~~~--f~~mp~-~a~ 168 (331)
T KOG0374|consen 156 FNDA--FNCLPL-AAL 168 (331)
T ss_pred HHHH--HhhCch-hhe
Confidence 8533 234555 443
No 37
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=24.05 E-value=4.1e+02 Score=21.83 Aligned_cols=49 Identities=14% Similarity=0.113 Sum_probs=32.9
Q ss_pred CceeeccccCCCCCCchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhh
Q psy3115 50 ETHVYLNFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRL 102 (226)
Q Consensus 50 ~~l~Y~~F~~DFGPLnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRa 102 (226)
.-+.|...-.+-.|-+...+.+++..+++..+ ..+.+||..|+. .-.||
T Consensus 136 ~~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~---~~~~pivVhc~~-G~gRs 184 (235)
T PF00102_consen 136 THFHYTNWPDDGVPPSPESFLDFIRKVNKSKD---DPNGPIVVHCSD-GVGRS 184 (235)
T ss_dssp EEEEEESSSSSSSGSSSHHHHHHHHHHHHHHS---TTSSEEEEESSS-SSHHH
T ss_pred cceeeeeccccccccccchhhhhhhhcccccc---CCccceEeeccc-ccccc
Confidence 45667777666667789999999999999872 234555555543 34555
No 38
>smart00258 SAND SAND domain.
Probab=24.04 E-value=25 Score=26.54 Aligned_cols=19 Identities=32% Similarity=0.728 Sum_probs=16.0
Q ss_pred cccCCeeeeecCceeeccCC
Q psy3115 184 IQFGDISWIVPNKLLAFSGP 203 (226)
Q Consensus 184 veNGD~NWIvP~KflAFsgP 203 (226)
++.+| .|+.|.+|...+|=
T Consensus 28 I~~~~-~~~TP~eFe~~~g~ 46 (73)
T smart00258 28 IQYED-KWFTPKEFEIEGGK 46 (73)
T ss_pred ccCCC-EEEChHHHHhhcCC
Confidence 45567 89999999999994
No 39
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=23.21 E-value=1.9e+02 Score=21.15 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=10.6
Q ss_pred CCCceEEEEcCCCcc
Q psy3115 85 LKHKVIIHYTGNNPK 99 (226)
Q Consensus 85 ~~~k~Iv~yts~d~~ 99 (226)
.++++||+||....+
T Consensus 59 ~~~~~ivvyC~~G~r 73 (101)
T cd01518 59 LKGKKVLMYCTGGIR 73 (101)
T ss_pred cCCCEEEEECCCchh
Confidence 367889999976433
No 40
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=20.70 E-value=70 Score=26.11 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=23.4
Q ss_pred CCCcchhh-----hHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCcccCCCCCC
Q psy3115 95 GNNPKKRL-----NAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAFQDASDENS 146 (226)
Q Consensus 95 s~d~~kRa-----NAa~Li~~y~vi~l~~sp~~a~~~~~~~~~~~~~pFRDAs~g~~ 146 (226)
++||+|-+ =|||||+.|--.+. ..++..|+|=++|+-
T Consensus 29 ~TdP~K~VfEDlaIAAyLi~LW~~~~~---------------~~~~~~FVDlGCGNG 70 (112)
T PF07757_consen 29 STDPQKHVFEDLAIAAYLIELWRDMYG---------------EQKFQGFVDLGCGNG 70 (112)
T ss_pred cCCchhhHHHHHHHHHHHHHHHhcccC---------------CCCCCceEEccCCch
Confidence 77887765 45555555442221 136788999998874
No 41
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=20.53 E-value=2.3e+02 Score=23.73 Aligned_cols=58 Identities=14% Similarity=0.330 Sum_probs=29.6
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCcCCCceEEEEcCCCcchhhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy3115 61 FGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQ 128 (226)
Q Consensus 61 FGPLnL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kRaNAa~Li~~y~vi~l~~sp~~a~~~~~ 128 (226)
+.|+.-.++-+..+ -+|.. ++.+|...|. +.+.| +-+++|||- ..+|||-.+|+.-+.
T Consensus 71 ~~~~~~~~v~~aL~---~ild~---~n~PvLiHC~-~G~~r--TG~vvg~lR-k~Q~W~~~~i~~Ey~ 128 (164)
T PF03162_consen 71 WVPISEEQVAEALE---IILDP---RNYPVLIHCN-HGKDR--TGLVVGCLR-KLQGWSLSSIFDEYR 128 (164)
T ss_dssp G----HHHHHHHHH---HHH-G---GG-SEEEE-S-SSSSH--HHHHHHHHH-HHTTB-HHHHHHHHH
T ss_pred cccCCHHHHHHHHH---HHhCC---CCCCEEEEeC-CCCcc--hhhHHHHHH-HHcCCCHHHHHHHHH
Confidence 45555555543332 22332 3456655553 33334 467799999 569999999975544
Done!