RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3115
(226 letters)
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 196 bits (498), Expect = 6e-62
Identities = 82/206 (39%), Positives = 125/206 (60%), Gaps = 6/206 (2%)
Query: 20 EIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCDKLKAK 79
DRL FA S + + +H+F D Y NF+ DFGP+ L+ +YRYC K+ K
Sbjct: 12 LDITDRLCFAILYS--RPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKK 69
Query: 80 LNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAFQ 139
L S T+ K I+H+TG++ +K+ NAAFL+GCY +IYL TP E Y+ L +I F+
Sbjct: 70 LKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIFGE-TSYIPFR 128
Query: 140 DASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYERIQFGDISWIVPNKLLA 199
DA+ + + + LL+CF+AV KA Q+ +F+ F++DE E YE+ + GD++WI+P++ +A
Sbjct: 129 DAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIPDRFIA 188
Query: 200 FSGPNTT---EQNTCYHPPEFYLDKV 222
F GP++ E H PE Y+
Sbjct: 189 FCGPHSRARLESGYHQHSPETYIQYF 214
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 5e-10
Identities = 35/253 (13%), Positives = 69/253 (27%), Gaps = 90/253 (35%)
Query: 26 LYFA------TFKSNRERPTTTKIHFFCTDETHV--------YLNFFGDFGPICLSTLYR 71
+F F PT F D+ +L + + S + +
Sbjct: 26 SFFIASQLQEQFNKILPEPTEG----FAADDEPTTPAELVGKFLGYVSS--LVEPSKVGQ 79
Query: 72 YCDKLKAKLN---SSTLK----HKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIY 124
+ L L + L+ H + N + LI Y
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY------------I 127
Query: 125 KALQANNKVPFIA------FQDASDENSK-YTL------------ELLECFNA------- 158
A + PF F+ + N++ + EL + +
Sbjct: 128 TARIMAKR-PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 159 -VFKARQHNLFDFDDFDVDEMEKYERIQFG-DI-SWIVPNKLLAFSGPNTTEQNTCYHPP 215
+ + + L + +D + + + G +I W+ P+ T P
Sbjct: 187 LIKFSAET-LSELIRTTLDAEKVFTQ---GLNILEWL--------ENPSNT-------PD 227
Query: 216 EFYLDK--VSIPI 226
+ YL +S P+
Sbjct: 228 KDYLLSIPISCPL 240
Score = 40.4 bits (94), Expect = 4e-04
Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 45/158 (28%)
Query: 12 VKDL----DLFTEIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLS 67
+D+ D KD F+ P IHF + N + +
Sbjct: 1642 AQDVWNRADNHF---KDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN----YSAMIFE 1694
Query: 68 TLY---RYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLN-------AAFLIGCYAII-YL 116
T+ +K+ ++N + YT + K L+ A L+ A L
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTS------YTFRSEKGLLSATQFTQPALTLME-KAAFEDL 1747
Query: 117 K---FTPN----------EIYKALQANNKVPFIAFQDA 141
K P E Y AL + V ++ +
Sbjct: 1748 KSKGLIPADATFAGHSLGE-YAALASLADV--MSIESL 1782
Score = 31.2 bits (70), Expect = 0.34
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 26/72 (36%)
Query: 4 HTPLEGHDVKDLD------LFTEIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNF 57
T +G D++ L + I + + + TTT+ TH+ L
Sbjct: 461 DT-FDGSDLRVLSGSISERIVDCIIRLPVKW---------ETTTQ-----FKATHI-L-- 502
Query: 58 FGDFGPICLSTL 69
DFGP S L
Sbjct: 503 --DFGPGGASGL 512
Score = 29.6 bits (66), Expect = 1.1
Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 38/134 (28%)
Query: 63 P-ICLSTLYRYC----------DKLKAKLNSSTLKHKVII------------HYTGNNPK 99
P I + L Y +L++ L +T + ++ + + +
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF-VSVR 297
Query: 100 KRLNAAFLIGC-----YAIIYLKFTPNEIYKALQANNKVP--FIAFQDASDENSKYTLE- 151
K + F IG Y L P+ + +L+ N VP ++ + + E ++
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSL--PPSILEDSLENNEGVPSPMLSISNLTQE----QVQD 351
Query: 152 LLECFNAVFKARQH 165
+ N+ A +
Sbjct: 352 YVNKTNSHLPAGKQ 365
Score = 28.1 bits (62), Expect = 2.9
Identities = 21/125 (16%), Positives = 32/125 (25%), Gaps = 39/125 (31%)
Query: 73 CDK-LKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCY---AI--IYLKFTPNEIYKA 126
D K S I+ NNP G I Y I
Sbjct: 1649 ADNHFKDTYGFS------ILDIVINNPVN---LTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 127 LQANNKVPFIAFQDASDENSKYTLE-----------------LLECFNAVFKA-RQHNLF 168
K+ F++ ++ ++ YT L+E A F+ + L
Sbjct: 1700 KLKTEKI----FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK--AAFEDLKSKGLI 1753
Query: 169 DFDDF 173
D
Sbjct: 1754 PADAT 1758
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 37.0 bits (86), Expect = 0.001
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 182 ERIQFGDISWIVPNKLLAFSGPNT 205
+Q + SW++P +L + P
Sbjct: 2 LGVQPPNFSWVLPGRLAGLALPRL 25
Score = 29.7 bits (67), Expect = 0.46
Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 10/78 (12%)
Query: 54 YLNF-FGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIH-YTGNNPKKRLNAAFLIGCY 111
DF P + R+ + V +H G R ++ CY
Sbjct: 59 LHRLRIPDFCPPAPDQIDRFVQIVDEANAR---GEAVGVHCALGFG---R--TGTMLACY 110
Query: 112 AIIYLKFTPNEIYKALQA 129
+ + ++
Sbjct: 111 LVKERGLAAGDAIAEIRR 128
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 31.0 bits (69), Expect = 0.31
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 181 YERIQFGDISWIVPNKLLAFSGPNTTEQNTCYHPPE 216
E D+++I PN ++A P + + +
Sbjct: 11 QEDGFDLDLTYIYPN-IIAMGFPAERLEGVYRNNID 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.46
Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 44/135 (32%)
Query: 68 TLYRYCDKLKAKLNSSTLKHKVII-HYTGNNPKKRLNAAFLIGC---YAIIYLKFTPNEI 123
++ +LK KL + H+ I+ HY N PK + + Y
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQY-----------F 473
Query: 124 YKALQANNKVPFIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEKYER 183
Y I + E+ E + F VF DF F +E+ +
Sbjct: 474 YS---------HIGHHLKNIEHP----ERMTLFRMVF-------LDF-RF----LEQ--K 506
Query: 184 IQFGDISWIVPNKLL 198
I+ +W +L
Sbjct: 507 IRHDSTAWNASGSIL 521
Score = 27.9 bits (61), Expect = 3.1
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 15 LDLFTEIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLST 68
L+ +++ + Y ER + F E ++ + + D I L
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 30.3 bits (68), Expect = 0.64
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 117 KFTPNEIYKALQANNKVPFIAFQDASD----ENSKYTLELLECFNAVFKA------RQHN 166
KF+ + +A + P +A D E ++ A + R+
Sbjct: 288 KFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRG 347
Query: 167 LFDFDD 172
FDD
Sbjct: 348 ELGFDD 353
>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism,
hydrolase manganese; 1.85A {Escherichia coli} PDB:
2r8t_A 3bih_A 1ni9_A 3d1r_A*
Length = 338
Score = 28.8 bits (65), Expect = 1.6
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 197 LLAFSGPN------TTEQNTCYHPPEFYLDKVSIP 225
+ A N ++ + P+ Y++K+ +
Sbjct: 94 MTAMGQANALAVLAVGDKGCFLNAPDMYMEKLIVG 128
>3roj_A D-fructose 1,6-bisphosphatase class 2/sedoheptulo bisphosphatase;
fructose-1,6-/sedoheptulose-1,7-bisphosphatase,
hydrolase; HET: AMP GOL; 2.30A {Synechocystis} PDB:
3rpl_A*
Length = 379
Score = 28.1 bits (63), Expect = 2.8
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 197 LLAFSGPN------TTEQNTCYHPPEFYLDKVSIP 225
L+A+ +E+ + P+FY+ K++ P
Sbjct: 138 LVAYGQNGSMAVLAISEKGGLFAAPDFYMKKLAAP 172
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 27.1 bits (60), Expect = 3.6
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 189 ISWIVPNKLLAFSGPNTTE 207
+ W+ + P T
Sbjct: 1 MYWVRRKTIGGSGLPYTEN 19
>2ffg_A YKUJ; structural genomics, PSI, protein structure initiative,
northeast structural genomics consortium, unknown
function; 2.31A {Bacillus subtilis} SCOP: d.317.1.1
Length = 87
Score = 26.0 bits (57), Expect = 4.5
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 163 RQHNLFDFDDFDVDEMEKYERIQF 186
+ N + FD+ D+ +E +E +Q
Sbjct: 57 EKPNTYPFDNIDMVSIEIFELLQL 80
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 27.0 bits (59), Expect = 5.9
Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 121 NEIYKALQANNKVPFIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEMEK 180
+ + ++ N + +D +E N F++R + +F D+ +E+ +
Sbjct: 157 EILLQVMENNRDDLVVILAGYADR-----MENFFQSNPGFRSRIAHHIEFPDYSDEELFE 211
Query: 181 YERIQFGDISW 191
D ++
Sbjct: 212 IAGHMLDDQNY 222
>1rep_C REPE54, protein (replication initiation protein); replication
initiator, DNA-binding,, replication/DNA complex; HET:
DNA; 2.60A {Escherichia coli} SCOP: a.4.5.10 a.4.5.10
PDB: 2z9o_A*
Length = 251
Score = 26.2 bits (57), Expect = 9.6
Identities = 21/176 (11%), Positives = 46/176 (26%), Gaps = 14/176 (7%)
Query: 18 FTEIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCDKLK 77
+ QK LY + + T + C Y FG + + + +
Sbjct: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG----LTSAEASKDIRQAL 86
Query: 78 AKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCY-----AIIYLKFTPNEIYKALQANNK 132
+ + K + + I + + P I + N+
Sbjct: 87 KSFAGKEVVFY-RPEEDAGDEKGYESFPWFIKPAHSPSRGLYSVHINPYLIPFFIGLQNR 145
Query: 133 VPFIAFQDASDENSKYTLELLECFNAVFKARQHNLFDFDDFDVDEM----EKYERI 184
+ + + Y + L E K + + E + Y+R+
Sbjct: 146 FTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRM 201
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A
{Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A*
1ss9_A*
Length = 311
Score = 26.3 bits (58), Expect = 9.9
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 56 NFFGDFGPICLSTLYRYCDKLKAKLNSSTLKHKVIIHYTGNN 97
NF + + ++T+ + HY G
Sbjct: 208 NFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPA 249
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.432
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,476,380
Number of extensions: 194159
Number of successful extensions: 435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 34
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.5 bits)