RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3115
         (226 letters)



>d1ohea1 c.45.1.1 (A:42-198) Proline directed phosphatase CDC14b2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 157

 Score =  164 bits (416), Expect = 2e-52
 Identities = 62/152 (40%), Positives = 92/152 (60%), Gaps = 3/152 (1%)

Query: 20  EIQKDRLYFATFKSNRERPTTTKIHFFCTDETHVYLNFFGDFGPICLSTLYRYCDKLKAK 79
               DRL FA   S     + + +H+F  D    Y NF+ DFGP+ L+ +YRYC K+  K
Sbjct: 9   LDITDRLCFAILYS--RPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKK 66

Query: 80  LNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQANNKVPFIAFQ 139
           L S T+  K I+H+TG++ +K+ NAAFL+GCY +IYL  TP E Y+ L       +I F+
Sbjct: 67  LKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIFGET-SYIPFR 125

Query: 140 DASDENSKYTLELLECFNAVFKARQHNLFDFD 171
           DA+  +  + + LL+CF+AV KA Q+   +F+
Sbjct: 126 DAAYGSCNFYITLLDCFHAVKKAMQYGFLNFN 157


>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 182

 Score = 56.6 bits (136), Expect = 9e-11
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 173 FDVDEMEKYERIQFGDISWIVPNKLLAFSGPNTT---EQNTCYHPPEFYLDKV 222
           F++DE E YE+ + GD++WI+P++ +AF GP++    E     H PE Y+   
Sbjct: 2   FNLDEYEHYEKAENGDLNWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYF 54


>d1lvaa4 a.4.5.35 (A:575-634) C-terminal fragment of elongation
           factor SelB {Moorella thermoacetica [TaxId: 1525]}
          Length = 60

 Score = 24.7 bits (54), Expect = 2.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 122 EIYKALQANNKVPFIAFQDASDENSKYTLELLECFNAV 159
           E+ K L +         +DA   + KY L LLE  + V
Sbjct: 8   EVIKNLASTGPFGLAEARDALGSSRKYVLPLLEYLDQV 45


>d2ffga1 d.317.1.1 (A:2-79) Hypothetical protein YkuJ {Bacillus
           subtilis [TaxId: 1423]}
          Length = 78

 Score = 24.7 bits (54), Expect = 3.1
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 163 RQHNLFDFDDFDVDEMEKYERIQ 185
            + N + FD+ D+  +E +E +Q
Sbjct: 56  EKPNTYPFDNIDMVSIEIFELLQ 78


>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 134

 Score = 25.3 bits (55), Expect = 4.5
 Identities = 8/60 (13%), Positives = 20/60 (33%)

Query: 70  YRYCDKLKAKLNSSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFTPNEIYKALQA 129
           Y+   ++  K      +  +++  +GN  K         G   ++    + + I   L  
Sbjct: 66  YQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSD 125


>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 194

 Score = 25.0 bits (54), Expect = 7.1
 Identities = 3/39 (7%), Positives = 8/39 (20%), Gaps = 5/39 (12%)

Query: 189 ISWIVPNKLLAFSGP-----NTTEQNTCYHPPEFYLDKV 222
               V  + L          ++         P    + +
Sbjct: 12  RGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYL 50


>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
           [TaxId: 4577]}
          Length = 261

 Score = 25.2 bits (54), Expect = 7.3
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 121 NEIYKALQANNKVPFIAFQDASDENSKYTLELLECFNA 158
           ++   AL A  K  FI +  A D +   T E L   + 
Sbjct: 5   SDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDG 42


>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus
           thermophilus [TaxId: 274]}
          Length = 271

 Score = 25.1 bits (54), Expect = 7.6
 Identities = 5/33 (15%), Positives = 14/33 (42%)

Query: 122 EIYKALQANNKVPFIAFQDASDENSKYTLELLE 154
           E +   ++  +   I +  A   + +  L+ +E
Sbjct: 5   EAFAKARSEGRAALIPYLTAGFPSREGFLQAVE 37


>d1q6wa_ d.38.1.4 (A:) Monoamine oxidase regulatory protein
           {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 151

 Score = 24.4 bits (52), Expect = 10.0
 Identities = 10/98 (10%), Positives = 30/98 (30%), Gaps = 4/98 (4%)

Query: 23  KDRLYFATFKSNRERPTTTKIHFFCTDETHV-YLNFFGDFGPICLSTLYRYCDKLKAKLN 81
           ++ +YF + +   +     +     T+     +     DF P+     +         + 
Sbjct: 2   RNPIYFESIQIGEKIEGLPRT---VTETDIWTFAYLTADFFPLHTDVEFAKKTIFGKPIA 58

Query: 82  SSTLKHKVIIHYTGNNPKKRLNAAFLIGCYAIIYLKFT 119
              L   + +           + + +I  + I  ++F 
Sbjct: 59  QGMLVLSIALGMVDQVILSNYDVSSVIAFFGIKDVRFL 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 878,580
Number of extensions: 40269
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 14
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)