Query psy3116
Match_columns 177
No_of_seqs 190 out of 752
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 16:51:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 1.7E-21 5.8E-26 132.3 3.7 58 34-91 2-59 (60)
2 2d8s_A Cellular modulator of i 99.7 1.2E-18 4.3E-23 124.2 4.6 67 30-96 7-75 (80)
3 2kiz_A E3 ubiquitin-protein li 97.7 2E-05 6.9E-10 52.3 3.4 53 34-93 10-65 (69)
4 2l0b_A E3 ubiquitin-protein li 97.7 1.4E-05 4.9E-10 56.5 2.6 50 34-90 36-88 (91)
5 2ecm_A Ring finger and CHY zin 97.6 2.6E-05 8.9E-10 49.4 2.1 47 36-89 3-53 (55)
6 2ecl_A Ring-box protein 2; RNF 97.6 2.6E-05 8.7E-10 54.2 2.2 52 36-93 13-78 (81)
7 2ep4_A Ring finger protein 24; 97.6 6.5E-05 2.2E-09 50.5 4.1 49 35-90 12-63 (74)
8 1v87_A Deltex protein 2; ring- 97.5 6.2E-05 2.1E-09 54.6 3.3 52 37-93 24-96 (114)
9 1x4j_A Ring finger protein 38; 97.5 4.5E-05 1.5E-09 51.6 2.4 49 35-90 20-71 (75)
10 1iym_A EL5; ring-H2 finger, ub 97.4 2.9E-05 9.8E-10 49.3 0.7 49 36-90 3-54 (55)
11 2ct2_A Tripartite motif protei 97.3 0.00017 5.9E-09 49.5 4.0 53 35-92 12-69 (88)
12 2ct0_A Non-SMC element 1 homol 97.3 9.4E-05 3.2E-09 51.7 2.1 55 35-95 12-68 (74)
13 2ect_A Ring finger protein 126 97.3 0.00011 3.6E-09 49.9 2.0 52 35-93 12-66 (78)
14 2ea6_A Ring finger protein 4; 97.2 9.8E-05 3.3E-09 48.4 1.5 49 35-90 12-67 (69)
15 3ng2_A RNF4, snurf, ring finge 97.2 8.3E-05 2.9E-09 49.2 0.9 53 33-92 5-64 (71)
16 2d8t_A Dactylidin, ring finger 97.2 0.00011 3.9E-09 49.2 1.5 51 35-92 12-62 (71)
17 2yur_A Retinoblastoma-binding 97.1 0.00023 8E-09 48.1 2.9 50 36-90 13-63 (74)
18 1chc_A Equine herpes virus-1 r 97.1 0.00024 8.3E-09 46.7 2.5 49 36-91 3-52 (68)
19 2csy_A Zinc finger protein 183 97.1 0.0005 1.7E-08 47.0 4.1 49 35-90 12-60 (81)
20 2ecw_A Tripartite motif-contai 97.0 0.00033 1.1E-08 47.4 2.6 52 36-92 17-72 (85)
21 3dpl_R Ring-box protein 1; ubi 97.0 0.00046 1.6E-08 50.9 3.4 51 36-93 35-103 (106)
22 2ecv_A Tripartite motif-contai 96.9 0.00054 1.8E-08 46.3 3.2 52 36-92 17-72 (85)
23 2ysl_A Tripartite motif-contai 96.8 0.00044 1.5E-08 46.0 2.0 53 35-92 17-70 (73)
24 2xeu_A Ring finger protein 4; 96.8 0.00024 8.3E-09 45.8 0.5 48 37-91 2-56 (64)
25 2ecy_A TNF receptor-associated 96.6 0.00083 2.9E-08 44.1 2.2 50 36-91 13-62 (66)
26 2ecj_A Tripartite motif-contai 96.6 0.0012 4.2E-08 41.7 2.9 45 36-85 13-58 (58)
27 1e4u_A Transcriptional repress 96.6 0.0012 4.2E-08 45.9 3.0 54 35-92 8-63 (78)
28 2ecn_A Ring finger protein 141 96.6 0.00018 6E-09 47.8 -1.4 48 36-91 13-60 (70)
29 3lrq_A E3 ubiquitin-protein li 96.6 0.00075 2.6E-08 48.3 1.8 51 37-93 21-72 (100)
30 3ztg_A E3 ubiquitin-protein li 96.6 0.0019 6.6E-08 44.8 3.7 50 36-90 11-61 (92)
31 2djb_A Polycomb group ring fin 96.5 0.0014 4.9E-08 43.7 2.9 51 36-93 13-64 (72)
32 2ysj_A Tripartite motif-contai 96.4 0.0026 8.8E-08 41.2 3.5 46 35-85 17-63 (63)
33 4a0k_B E3 ubiquitin-protein li 96.4 0.00062 2.1E-08 51.2 0.6 53 36-93 46-114 (117)
34 1t1h_A Gspef-atpub14, armadill 96.4 0.0015 5.3E-08 44.0 2.4 52 35-92 5-56 (78)
35 2egp_A Tripartite motif-contai 96.3 0.00048 1.6E-08 46.4 -0.8 52 36-92 10-66 (79)
36 1jm7_A BRCA1, breast cancer ty 96.2 0.002 7E-08 46.0 2.4 50 38-92 21-71 (112)
37 4ayc_A E3 ubiquitin-protein li 96.0 0.0017 5.8E-08 48.9 1.0 47 38-91 53-99 (138)
38 3fl2_A E3 ubiquitin-protein li 95.8 0.0036 1.2E-07 46.0 2.1 49 37-91 51-99 (124)
39 2y43_A E3 ubiquitin-protein li 95.7 0.0034 1.2E-07 44.3 1.5 48 37-91 21-69 (99)
40 1g25_A CDK-activating kinase a 95.7 0.0031 1E-07 41.2 1.1 49 37-91 2-55 (65)
41 3k1l_B Fancl; UBC, ring, RWD, 95.5 0.0049 1.7E-07 54.8 2.0 55 35-92 305-374 (381)
42 2ckl_B Ubiquitin ligase protei 95.4 0.0061 2.1E-07 46.9 2.2 46 39-90 55-101 (165)
43 2y1n_A E3 ubiquitin-protein li 95.4 0.0093 3.2E-07 53.2 3.5 50 39-94 333-382 (389)
44 2c2l_A CHIP, carboxy terminus 95.2 0.011 3.6E-07 48.0 3.2 51 35-91 205-255 (281)
45 1z6u_A NP95-like ring finger p 95.2 0.0076 2.6E-07 46.4 1.9 50 37-92 77-126 (150)
46 2ckl_A Polycomb group ring fin 95.0 0.0052 1.8E-07 44.1 0.6 50 36-92 13-63 (108)
47 4ap4_A E3 ubiquitin ligase RNF 95.0 0.0035 1.2E-07 45.5 -0.4 50 36-92 5-61 (133)
48 1rmd_A RAG1; V(D)J recombinati 95.0 0.01 3.5E-07 42.9 2.1 50 37-92 22-71 (116)
49 3hct_A TNF receptor-associated 94.6 0.011 3.6E-07 43.2 1.4 50 36-91 16-65 (118)
50 4ap4_A E3 ubiquitin ligase RNF 94.6 0.015 5.2E-07 42.0 2.2 51 35-92 69-126 (133)
51 2kr4_A Ubiquitin conjugation f 93.8 0.062 2.1E-06 37.3 3.9 51 35-92 11-61 (85)
52 3l11_A E3 ubiquitin-protein li 93.5 0.005 1.7E-07 44.5 -2.3 51 35-91 12-62 (115)
53 3nw0_A Non-structural maintena 93.3 0.033 1.1E-06 46.2 2.2 52 36-93 178-231 (238)
54 1jm7_B BARD1, BRCA1-associated 92.9 0.012 4.2E-07 42.8 -1.0 46 37-91 21-67 (117)
55 2vje_A E3 ubiquitin-protein li 92.3 0.063 2.1E-06 35.3 2.0 50 35-90 5-56 (64)
56 2f42_A STIP1 homology and U-bo 92.1 0.11 3.6E-06 41.6 3.5 52 35-92 103-154 (179)
57 2kre_A Ubiquitin conjugation f 91.9 0.081 2.8E-06 38.0 2.3 51 34-91 25-75 (100)
58 4ic3_A E3 ubiquitin-protein li 90.7 0.05 1.7E-06 36.6 0.2 45 37-92 23-68 (74)
59 1bor_A Transcription factor PM 90.2 0.048 1.7E-06 34.7 -0.2 48 35-92 3-50 (56)
60 2vje_B MDM4 protein; proto-onc 89.3 0.14 4.7E-06 33.5 1.5 49 36-90 5-55 (63)
61 1wgm_A Ubiquitin conjugation f 89.1 0.19 6.6E-06 35.8 2.2 51 36-92 20-70 (98)
62 2yu4_A E3 SUMO-protein ligase 88.8 0.26 8.9E-06 34.5 2.7 50 34-88 3-59 (94)
63 3hcs_A TNF receptor-associated 88.0 0.2 6.9E-06 38.3 1.8 50 36-91 16-65 (170)
64 2ea5_A Cell growth regulator w 87.6 0.29 1E-05 32.5 2.2 48 35-92 12-59 (68)
65 2ecg_A Baculoviral IAP repeat- 86.6 0.27 9.4E-06 32.8 1.7 44 38-91 25-68 (75)
66 1wim_A KIAA0161 protein; ring 85.8 0.4 1.4E-05 33.2 2.2 50 36-90 3-63 (94)
67 1weo_A Cellulose synthase, cat 85.3 0.96 3.3E-05 32.8 4.0 53 34-90 12-69 (93)
68 3knv_A TNF receptor-associated 82.4 0.12 4.1E-06 39.2 -1.9 49 36-90 29-77 (141)
69 3t6p_A Baculoviral IAP repeat- 80.7 0.22 7.4E-06 43.4 -1.1 45 38-92 295-339 (345)
70 3htk_C E3 SUMO-protein ligase 77.9 0.55 1.9E-05 39.9 0.5 51 37-92 180-233 (267)
71 2bay_A PRE-mRNA splicing facto 77.2 0.84 2.9E-05 29.8 1.2 47 39-92 4-51 (61)
72 2lri_C Autoimmune regulator; Z 76.5 0.58 2E-05 31.4 0.3 48 36-88 10-59 (66)
73 2yho_A E3 ubiquitin-protein li 75.9 0.66 2.3E-05 31.6 0.4 45 38-92 18-62 (79)
74 2ysm_A Myeloid/lymphoid or mix 68.0 0.67 2.3E-05 33.4 -1.1 40 33-75 2-42 (111)
75 1wen_A Inhibitor of growth fam 67.9 1.7 5.8E-05 29.5 1.0 49 35-88 13-65 (71)
76 2l43_A N-teminal domain from h 67.7 0.31 1.1E-05 34.5 -2.9 51 35-88 22-75 (88)
77 2k16_A Transcription initiatio 67.7 0.3 1E-05 33.0 -2.9 52 35-89 15-69 (75)
78 2ku3_A Bromodomain-containing 65.0 0.58 2E-05 31.9 -1.8 51 34-87 12-65 (71)
79 2l5u_A Chromodomain-helicase-D 64.8 1.1 3.8E-05 29.3 -0.4 53 31-88 4-58 (61)
80 3ql9_A Transcriptional regulat 57.1 7 0.00024 29.6 2.8 47 35-86 54-109 (129)
81 2lbm_A Transcriptional regulat 55.6 5.7 0.00019 30.5 2.1 49 34-87 59-116 (142)
82 3u5n_A E3 ubiquitin-protein li 53.0 1 3.4E-05 36.0 -2.7 51 34-89 3-55 (207)
83 2vnf_A ING 4, P29ING4, inhibit 52.1 0.64 2.2E-05 30.5 -3.3 48 35-87 7-58 (60)
84 1weu_A Inhibitor of growth fam 49.0 2.6 8.7E-05 30.1 -0.8 49 35-88 33-85 (91)
85 3v43_A Histone acetyltransfera 47.8 7.1 0.00024 28.1 1.5 34 36-72 3-43 (112)
86 1f62_A Transcription factor WS 41.4 4.1 0.00014 25.2 -0.6 45 40-87 2-49 (51)
87 3o36_A Transcription intermedi 39.5 2.4 8.3E-05 33.0 -2.4 48 36-88 2-51 (184)
88 2vpb_A Hpygo1, pygopus homolog 39.2 8.8 0.0003 25.4 0.7 35 33-70 3-40 (65)
89 2yt5_A Metal-response element- 35.1 9.1 0.00031 24.7 0.3 50 35-87 3-60 (66)
90 2jmi_A Protein YNG1, ING1 homo 34.8 9 0.00031 27.2 0.2 48 35-87 23-75 (90)
91 1mm2_A MI2-beta; PHD, zinc fin 30.8 3.5 0.00012 26.8 -2.4 49 35-88 6-56 (61)
92 2kvh_A Zinc finger and BTB dom 30.7 18 0.00062 17.5 1.0 12 80-91 4-15 (27)
93 2lvu_A Zinc finger and BTB dom 35.5 11 0.00039 18.2 0.0 13 80-92 3-15 (26)
94 1znf_A 31ST zinc finger from X 29.2 18 0.00063 17.3 0.8 12 80-91 2-13 (27)
95 2kvf_A Zinc finger and BTB dom 28.4 21 0.00073 17.3 1.0 12 80-91 4-15 (28)
96 1ard_A Yeast transcription fac 27.7 20 0.00068 17.4 0.8 12 80-91 3-14 (29)
97 2jny_A Uncharacterized BCR; st 27.6 26 0.00089 23.5 1.6 34 50-93 9-42 (67)
98 2ri7_A Nucleosome-remodeling f 26.7 7.6 0.00026 29.6 -1.4 50 35-88 5-59 (174)
99 2m0f_A Zinc finger and BTB dom 26.7 24 0.00081 17.0 1.0 12 80-91 3-14 (29)
100 1rik_A E6APC1 peptide; E6-bind 26.7 23 0.0008 17.1 1.0 12 80-91 3-14 (29)
101 2ro1_A Transcription intermedi 26.6 6.4 0.00022 31.0 -1.9 47 37-88 1-49 (189)
102 2kvg_A Zinc finger and BTB dom 25.7 20 0.00068 17.6 0.6 12 80-91 4-15 (27)
103 2elx_A Zinc finger protein 406 25.5 25 0.00087 17.9 1.0 13 79-91 7-19 (35)
104 2m0d_A Zinc finger and BTB dom 24.4 28 0.00095 16.8 1.0 12 80-91 4-15 (30)
105 2m0e_A Zinc finger and BTB dom 24.0 30 0.001 16.5 1.1 11 80-90 3-13 (29)
106 2kwj_A Zinc finger protein DPF 23.5 11 0.00037 27.3 -1.1 32 39-73 2-41 (114)
107 2elm_A Zinc finger protein 406 23.2 32 0.0011 18.2 1.2 13 79-91 9-21 (37)
108 2yql_A PHD finger protein 21A; 23.2 19 0.00066 22.6 0.2 48 34-86 5-54 (56)
109 1srk_A Zinc finger protein ZFP 22.9 31 0.001 17.7 1.0 13 79-91 7-19 (35)
110 2lvt_A Zinc finger and BTB dom 28.5 18 0.00061 17.8 0.0 13 80-92 3-15 (29)
111 3c6w_A P28ING5, inhibitor of g 22.7 15 0.00052 23.6 -0.4 47 35-86 6-56 (59)
112 2jr6_A UPF0434 protein NMA0874 22.4 35 0.0012 22.8 1.4 33 51-93 8-40 (68)
113 1klr_A Zinc finger Y-chromosom 22.4 27 0.00092 16.8 0.7 12 80-91 3-14 (30)
114 2elt_A Zinc finger protein 406 21.9 32 0.0011 17.7 1.0 13 79-91 9-21 (36)
115 1paa_A Yeast transcription fac 21.9 30 0.001 16.9 0.8 12 80-91 3-14 (30)
116 2js4_A UPF0434 protein BB2007; 21.7 36 0.0012 22.9 1.4 33 51-93 8-40 (70)
117 2pk7_A Uncharacterized protein 21.7 33 0.0011 23.0 1.2 33 51-93 8-40 (69)
118 1we9_A PHD finger family prote 21.5 25 0.00085 22.4 0.5 50 35-87 3-57 (64)
119 2elv_A Zinc finger protein 406 21.4 34 0.0012 17.7 1.0 13 79-91 9-21 (36)
120 1p7a_A BF3, BKLF, kruppel-like 21.0 31 0.0011 18.0 0.8 13 79-91 11-23 (37)
121 2lvr_A Zinc finger and BTB dom 26.5 20 0.0007 17.5 0.0 13 80-92 4-16 (30)
122 1xwh_A Autoimmune regulator; P 21.0 25 0.00087 22.8 0.5 49 35-88 5-55 (66)
123 3asl_A E3 ubiquitin-protein li 20.9 5.6 0.00019 26.6 -2.9 45 40-87 20-68 (70)
124 2elp_A Zinc finger protein 406 20.9 32 0.0011 18.0 0.8 13 79-91 9-21 (37)
125 1wev_A Riken cDNA 1110020M19; 20.7 12 0.00042 25.9 -1.2 53 36-91 14-75 (88)
126 1fp0_A KAP-1 corepressor; PHD 20.7 14 0.00049 26.1 -0.9 50 35-89 22-73 (88)
127 2elr_A Zinc finger protein 406 20.2 33 0.0011 17.6 0.8 13 79-91 9-21 (36)
128 1p1p_A AA-conotoxin PIVA; neur 20.0 32 0.0011 19.0 0.6 17 49-65 7-23 (26)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.83 E-value=1.7e-21 Score=132.29 Aligned_cols=58 Identities=29% Similarity=0.770 Sum_probs=53.6
Q ss_pred CCCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 34 DDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 34 ~~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
++++++.||||+++++++|+.||+|+||+++||+.||.+|+.++++.+||+|+++|++
T Consensus 2 e~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TTCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3568899999998776789999999999999999999999999999999999999986
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-18 Score=124.18 Aligned_cols=67 Identities=33% Similarity=0.825 Sum_probs=58.8
Q ss_pred CCCCCCCCCCeeEEcccCC--CCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEeeecCc
Q psy3116 30 PDSSDDEDMTICRICYGAD--QQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTERLPT 96 (177)
Q Consensus 30 ~~~~~~~~~~~CRIC~~~~--~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~~~~ 96 (177)
..+..+++++.|+||+++. +++++.||+|+|++.++|+.||.+|+..++...|++|+++|.++.+.+
T Consensus 7 ~~s~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 7 GTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS 75 (80)
T ss_dssp CCCCCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred CCCCCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence 3445567789999999765 678999999999999999999999999999899999999999887654
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.73 E-value=2e-05 Score=52.32 Aligned_cols=53 Identities=21% Similarity=0.589 Sum_probs=39.8
Q ss_pred CCCCCCeeEEcccCC---CCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEeee
Q psy3116 34 DDEDMTICRICYGAD---QQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93 (177)
Q Consensus 34 ~~~~~~~CRIC~~~~---~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~ 93 (177)
.......|.||++.. ......||. ...|..|+.+|+..++ .|++|+.++....
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccCcC
Confidence 356678999998765 334556763 4689999999998754 6999999876543
No 4
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.72 E-value=1.4e-05 Score=56.51 Aligned_cols=50 Identities=26% Similarity=0.648 Sum_probs=37.8
Q ss_pred CCCCCCeeEEcccCC---CCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeE
Q psy3116 34 DDEDMTICRICYGAD---QQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90 (177)
Q Consensus 34 ~~~~~~~CRIC~~~~---~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~ 90 (177)
..+....|-||++.. +.....||. ...|..|+.+|+..+ ..|++|+.++.
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~ 88 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFP 88 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSS
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCC
Confidence 356778999999766 223456754 479999999999654 58999998864
No 5
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.59 E-value=2.6e-05 Score=49.36 Aligned_cols=47 Identities=26% Similarity=0.456 Sum_probs=37.2
Q ss_pred CCCCeeEEcccCC----CCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCee
Q psy3116 36 EDMTICRICYGAD----QQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQF 89 (177)
Q Consensus 36 ~~~~~CRIC~~~~----~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y 89 (177)
.+...|.||++.. ....+.||. ...|..|+.+|+..+ ..|++|+.++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcC
Confidence 4567899999765 235667863 468999999999887 7899999875
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=2.6e-05 Score=54.25 Aligned_cols=52 Identities=21% Similarity=0.602 Sum_probs=37.3
Q ss_pred CCCCeeEEcccCCCC--------------cccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEeee
Q psy3116 36 EDMTICRICYGADQQ--------------NLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~--------------~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~ 93 (177)
.+++.|-||++..++ ....| .|. ...|..||.+|+..+ ..|++|+.++....
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~-~C~---H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWG-ECN---HSFHNCCMSLWVKQN--NRCPLCQQDWVVQR 78 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE-TTS---CEEEHHHHHHHTTTC--CBCTTTCCBCCEEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeC-CCC---CccChHHHHHHHHhC--CCCCCcCCCcchhh
Confidence 456778888765511 22333 443 579999999999876 48999999987654
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=6.5e-05 Score=50.47 Aligned_cols=49 Identities=20% Similarity=0.564 Sum_probs=36.5
Q ss_pred CCCCCeeEEcccCC-CCcc--cccccccCccccccHHHHHHHHHHcCCCccCCCCCeeE
Q psy3116 35 DEDMTICRICYGAD-QQNL--LSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90 (177)
Q Consensus 35 ~~~~~~CRIC~~~~-~~~L--i~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~ 90 (177)
......|.||++.. +... +.||. ...|..|+.+|++.+. .|++|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~ 63 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVL 63 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCcccc
Confidence 35578999999876 2222 23652 4689999999998754 8999999875
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.49 E-value=6.2e-05 Score=54.59 Aligned_cols=52 Identities=21% Similarity=0.408 Sum_probs=38.0
Q ss_pred CCCeeEEcccCCCCc----------------c--cccccccCccccccHHHHHHHHHH---cCCCccCCCCCeeEeee
Q psy3116 37 DMTICRICYGADQQN----------------L--LSICQCKGSIAYVHIECIERWLQE---CGVDKCDLCKYQFTTER 93 (177)
Q Consensus 37 ~~~~CRIC~~~~~~~----------------L--i~PC~C~Gs~~~VH~~CL~~Wi~~---s~~~~CelC~~~y~~~~ 93 (177)
....|-||++....+ . +.||. ...|..||.+|+.. .....|++|+..|....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 346899998765111 1 45664 47899999999976 34679999999997553
No 9
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.49 E-value=4.5e-05 Score=51.60 Aligned_cols=49 Identities=22% Similarity=0.650 Sum_probs=37.4
Q ss_pred CCCCCeeEEcccCC-C-C-cccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeE
Q psy3116 35 DEDMTICRICYGAD-Q-Q-NLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90 (177)
Q Consensus 35 ~~~~~~CRIC~~~~-~-~-~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~ 90 (177)
..+...|-||++.. . . ....||. ...|..|+.+|+..+ ..|++|+.++.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCC
Confidence 45678999999776 2 2 2456764 468999999999875 58999998875
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.43 E-value=2.9e-05 Score=49.25 Aligned_cols=49 Identities=24% Similarity=0.668 Sum_probs=35.9
Q ss_pred CCCCeeEEcccCC---CCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeE
Q psy3116 36 EDMTICRICYGAD---QQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90 (177)
Q Consensus 36 ~~~~~CRIC~~~~---~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~ 90 (177)
+++..|-||++.. +.....| .|. ...|..|+.+|++. ...|++|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~-~C~---H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLP-RCG---HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECS-SSC---CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECC-CCC---CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 4567899999876 2234455 232 46899999999965 468999998764
No 11
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.00017 Score=49.47 Aligned_cols=53 Identities=19% Similarity=0.403 Sum_probs=41.7
Q ss_pred CCCCCeeEEcccCCCC----cccccccccCccccccHHHHHHHHHHc-CCCccCCCCCeeEee
Q psy3116 35 DEDMTICRICYGADQQ----NLLSICQCKGSIAYVHIECIERWLQEC-GVDKCDLCKYQFTTE 92 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~----~Li~PC~C~Gs~~~VH~~CL~~Wi~~s-~~~~CelC~~~y~~~ 92 (177)
..+...|-||++...+ +.+.||. ...|..|+.+|+..+ +...|++|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4566889999987633 6667762 468999999999886 567899999998764
No 12
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.28 E-value=9.4e-05 Score=51.68 Aligned_cols=55 Identities=24% Similarity=0.613 Sum_probs=41.0
Q ss_pred CCCCCeeEEcccCC-CCcccccc-cccCccccccHHHHHHHHHHcCCCccCCCCCeeEeeecC
Q psy3116 35 DEDMTICRICYGAD-QQNLLSIC-QCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTERLP 95 (177)
Q Consensus 35 ~~~~~~CRIC~~~~-~~~Li~PC-~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~~~ 95 (177)
.+..+.|-||++.- .+. -| .|. .-.|..||.+|++.++...|++|+..+......
T Consensus 12 ~~~i~~C~IC~~~i~~g~---~C~~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ---SCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE---ECSSSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred cCCCCcCcchhhHcccCC---ccCCCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence 34568999998766 221 22 443 468999999999988778999999998866443
No 13
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.26 E-value=0.00011 Score=49.89 Aligned_cols=52 Identities=23% Similarity=0.533 Sum_probs=38.5
Q ss_pred CCCCCeeEEcccCC-C-Cc-ccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEeee
Q psy3116 35 DEDMTICRICYGAD-Q-QN-LLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93 (177)
Q Consensus 35 ~~~~~~CRIC~~~~-~-~~-Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~ 93 (177)
..+...|-||++.. . .. .+.||. ...|..|+.+|+..+ ..|++|+.++....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCcc
Confidence 45678999998876 2 22 334753 468999999999654 68999999987543
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=9.8e-05 Score=48.41 Aligned_cols=49 Identities=16% Similarity=0.479 Sum_probs=37.2
Q ss_pred CCCCCeeEEcccCCCCc-------ccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeE
Q psy3116 35 DEDMTICRICYGADQQN-------LLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~-------Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~ 90 (177)
..+...|-||++...++ .+.||. ...|..|+.+|+.. ...|++|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 45678899998765211 556763 46899999999987 468999998864
No 15
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.19 E-value=8.3e-05 Score=49.22 Aligned_cols=53 Identities=15% Similarity=0.436 Sum_probs=39.4
Q ss_pred CCCCCCCeeEEcccCCCCc-------ccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 33 SDDEDMTICRICYGADQQN-------LLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 33 ~~~~~~~~CRIC~~~~~~~-------Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
...++...|-||++...++ ...||. ...|..|+.+|+..+ ..|++|+.++...
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 64 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccChh
Confidence 3456778999998765222 556763 468999999999876 5899999998744
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.18 E-value=0.00011 Score=49.17 Aligned_cols=51 Identities=16% Similarity=0.378 Sum_probs=40.5
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
..+...|.||++...++...||. ...|..|+.+|+... ..|++|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHh
Confidence 45678999999877667777864 458999999999754 7899999998644
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.15 E-value=0.00023 Score=48.12 Aligned_cols=50 Identities=24% Similarity=0.409 Sum_probs=40.6
Q ss_pred CCCCeeEEcccCCCCccccc-ccccCccccccHHHHHHHHHHcCCCccCCCCCeeE
Q psy3116 36 EDMTICRICYGADQQNLLSI-CQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~P-C~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~ 90 (177)
.+...|.||++...++...| |. ...|..|+.+|+..++...|++|+.++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 45578999987777777777 63 3578999999999988889999999754
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.10 E-value=0.00024 Score=46.74 Aligned_cols=49 Identities=24% Similarity=0.596 Sum_probs=38.5
Q ss_pred CCCCeeEEcccCCCC-cccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 36 EDMTICRICYGADQQ-NLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~-~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
+.+..|-||++...+ ....||. ...|..|+.+|+..+ ..|++|+.++..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 456789999987744 4677864 358999999999765 589999998763
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.0005 Score=46.97 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=39.4
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeE
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~ 90 (177)
......|.||++...++.+.||. ...|..|+.+|+.. ...|++|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 34567899998877678888874 35699999999976 568999999986
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.01 E-value=0.00033 Score=47.40 Aligned_cols=52 Identities=17% Similarity=0.448 Sum_probs=41.7
Q ss_pred CCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHc----CCCccCCCCCeeEee
Q psy3116 36 EDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQEC----GVDKCDLCKYQFTTE 92 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s----~~~~CelC~~~y~~~ 92 (177)
.+...|.||++...++.+.||. ...|..|+.+|+..+ +...|++|+..+...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4567899998877667777763 458999999999985 378999999998754
No 21
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.99 E-value=0.00046 Score=50.85 Aligned_cols=51 Identities=24% Similarity=0.550 Sum_probs=36.8
Q ss_pred CCCCeeEEcccCCCCc------------------ccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEeee
Q psy3116 36 EDMTICRICYGADQQN------------------LLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~------------------Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~ 93 (177)
.+.+.|-||++..+++ ...| |. ...|..|+.+|+.. ...|++|+.+|.+..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~--C~---H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~~~ 103 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV--CN---HAFHFHCISRWLKT--RQVCPLDNREWEFQK 103 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET--TS---CEEEHHHHHHHHTT--CSBCSSSCSBCCEEE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc--cC---cEECHHHHHHHHHc--CCcCcCCCCcceeec
Confidence 4567899998664211 1234 43 57999999999976 568999999987654
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.00054 Score=46.31 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=41.5
Q ss_pred CCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHH----cCCCccCCCCCeeEee
Q psy3116 36 EDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQE----CGVDKCDLCKYQFTTE 92 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~----s~~~~CelC~~~y~~~ 92 (177)
.+...|.||++...++...||. ...|..|+.+|+.. .+...|++|+..+...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4567899999877667666764 35789999999987 3578999999998754
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.00044 Score=45.99 Aligned_cols=53 Identities=28% Similarity=0.573 Sum_probs=41.2
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHH-cCCCccCCCCCeeEee
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQE-CGVDKCDLCKYQFTTE 92 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~-s~~~~CelC~~~y~~~ 92 (177)
..+...|.||++...++...||. ...|..|+.+|+.. .+...|++|+.++...
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 35668999999877667666763 45899999999975 4567899999987643
No 24
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.81 E-value=0.00024 Score=45.78 Aligned_cols=48 Identities=19% Similarity=0.522 Sum_probs=36.0
Q ss_pred CCCeeEEcccCCCC-------cccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 37 DMTICRICYGADQQ-------NLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 37 ~~~~CRIC~~~~~~-------~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
+...|-||++...+ ....||. ...|..|+.+|++. ...|++|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 45689999876521 1456664 45899999999987 4689999998764
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.64 E-value=0.00083 Score=44.10 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=38.4
Q ss_pred CCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 36 EDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
.+...|.||++...++...||. ...|..|+.+|+. ++...|++|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 4567899998766666666764 3579999999997 456689999998753
No 26
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.63 E-value=0.0012 Score=41.71 Aligned_cols=45 Identities=20% Similarity=0.534 Sum_probs=35.3
Q ss_pred CCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHH-cCCCccCCC
Q psy3116 36 EDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQE-CGVDKCDLC 85 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~-s~~~~CelC 85 (177)
.+...|.||++...++.+.||. ...|..|+.+|+.. .+...|++|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567999999877667777763 35799999999875 467789988
No 27
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.62 E-value=0.0012 Score=45.87 Aligned_cols=54 Identities=19% Similarity=0.420 Sum_probs=42.9
Q ss_pred CCCCCeeEEcccCC--CCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 35 DEDMTICRICYGAD--QQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 35 ~~~~~~CRIC~~~~--~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
.++...|-||++.- ....+.||.|. ..+++.|+.++... +...|++|+..|...
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCCC
Confidence 45677899999866 45678899884 45899999998754 567899999998753
No 28
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.00018 Score=47.78 Aligned_cols=48 Identities=27% Similarity=0.688 Sum_probs=38.3
Q ss_pred CCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 36 EDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
.+...|.||++...+ .+.||. ...|..|+.+|+. +...|++|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC-cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 456889999988744 777874 4589999999997 56789999988763
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.58 E-value=0.00075 Score=48.27 Aligned_cols=51 Identities=25% Similarity=0.613 Sum_probs=40.6
Q ss_pred CCCeeEEcccCCCCccc-ccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEeee
Q psy3116 37 DMTICRICYGADQQNLL-SICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93 (177)
Q Consensus 37 ~~~~CRIC~~~~~~~Li-~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~ 93 (177)
+...|-||++...++.. .||. ...|..|+.+|+..++ ..|++|+..+....
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccCccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCHHH
Confidence 45789999887766766 7774 3579999999999875 68999999986543
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.55 E-value=0.0019 Score=44.83 Aligned_cols=50 Identities=24% Similarity=0.409 Sum_probs=41.2
Q ss_pred CCCCeeEEcccCCCCccccc-ccccCccccccHHHHHHHHHHcCCCccCCCCCeeE
Q psy3116 36 EDMTICRICYGADQQNLLSI-CQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~P-C~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~ 90 (177)
.+.-.|-||++...+|...| |. ...+..|+.+|+..++...|++|+..+.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 56689999997767787777 53 3477899999999888889999999974
No 31
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.54 E-value=0.0014 Score=43.73 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=38.9
Q ss_pred CCCCeeEEcccCCCCccc-ccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEeee
Q psy3116 36 EDMTICRICYGADQQNLL-SICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li-~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~ 93 (177)
.+...|.||++...++.. .||. ...|..|+.+|++. ...|++|+..+....
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCccc
Confidence 445789999887755554 4774 35799999999976 478999999987543
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.43 E-value=0.0026 Score=41.22 Aligned_cols=46 Identities=28% Similarity=0.560 Sum_probs=35.8
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHc-CCCccCCC
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQEC-GVDKCDLC 85 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s-~~~~CelC 85 (177)
..+...|.||++...++.+.||. ...|..|+.+|++.+ +...|++|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567999999877667766763 357999999999864 56789988
No 33
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.43 E-value=0.00062 Score=51.25 Aligned_cols=53 Identities=23% Similarity=0.496 Sum_probs=1.4
Q ss_pred CCCCeeEEcccCCCCc----------------ccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEeee
Q psy3116 36 EDMTICRICYGADQQN----------------LLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~----------------Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~ 93 (177)
...+.|-||++..+++ .+..-.|. ...|..|+.+|+.. ...|++|+.+|.+..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~---H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN---HAFHFHCISRWLKT--RQVCPLDNREWEFQK 114 (117)
T ss_dssp CCC-----------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcC---ceEcHHHHHHHHHc--CCcCCCCCCeeeeec
Confidence 3457899998664110 11111343 46899999999987 457999999987643
No 34
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.40 E-value=0.0015 Score=43.97 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=40.9
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
..+.-.|-||++...+|.+.||. ...++.|+.+|+.. +...|++|+.++...
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccCCEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCChh
Confidence 35677899998776778887764 45789999999963 467899999998643
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.26 E-value=0.00048 Score=46.37 Aligned_cols=52 Identities=23% Similarity=0.471 Sum_probs=41.2
Q ss_pred CCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHc-----CCCccCCCCCeeEee
Q psy3116 36 EDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQEC-----GVDKCDLCKYQFTTE 92 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s-----~~~~CelC~~~y~~~ 92 (177)
.+...|.||++...++...||. ...|..|+.+|+..+ +...|++|+..+...
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4678899999877667766763 357899999999873 377899999998754
No 36
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.24 E-value=0.002 Score=45.99 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=39.1
Q ss_pred CCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHc-CCCccCCCCCeeEee
Q psy3116 38 MTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQEC-GVDKCDLCKYQFTTE 92 (177)
Q Consensus 38 ~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s-~~~~CelC~~~y~~~ 92 (177)
...|-||++...++...||. ...|..|+.+|+..+ +...|++|+..+...
T Consensus 21 ~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 45799998876667777763 457899999999875 456899999987643
No 37
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.00 E-value=0.0017 Score=48.91 Aligned_cols=47 Identities=19% Similarity=0.487 Sum_probs=37.6
Q ss_pred CCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 38 MTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 38 ~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
...|.||++...++.+.||. ...|..|+.+|+.. ...|++|+..+..
T Consensus 53 ~~~C~iC~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCCC
Confidence 35799998877678888873 46899999999965 4679999998753
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=95.81 E-value=0.0036 Score=46.00 Aligned_cols=49 Identities=22% Similarity=0.567 Sum_probs=39.0
Q ss_pred CCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 37 DMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 37 ~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
+...|-||++...++...||. ...|..|+.+|+. .+...|++|+..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 346899998877677777863 3478999999998 455689999999865
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.71 E-value=0.0034 Score=44.31 Aligned_cols=48 Identities=23% Similarity=0.510 Sum_probs=37.5
Q ss_pred CCCeeEEcccCCCCcccc-cccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 37 DMTICRICYGADQQNLLS-ICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 37 ~~~~CRIC~~~~~~~Li~-PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
+...|.||++...++... ||. ...|..|+.+|+.. ...|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCS-----HNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTC-----CEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCC-----CHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 346899998877556554 664 35899999999985 4689999999875
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.66 E-value=0.0031 Score=41.18 Aligned_cols=49 Identities=16% Similarity=0.466 Sum_probs=35.8
Q ss_pred CCCeeEEcccC-CCCc----ccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 37 DMTICRICYGA-DQQN----LLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 37 ~~~~CRIC~~~-~~~~----Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
++..|-||++. ..++ ++.||. ...|..|+.+|+.. +...|++|+..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 45679999983 3222 456764 35799999999864 46789999999864
No 41
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.48 E-value=0.0049 Score=54.81 Aligned_cols=55 Identities=27% Similarity=0.737 Sum_probs=40.5
Q ss_pred CCCCCeeEEcccCC-C-Ccc-ccccc---ccCccccccHHHHHHHHHHcCC---------CccCCCCCeeEee
Q psy3116 35 DEDMTICRICYGAD-Q-QNL-LSICQ---CKGSIAYVHIECIERWLQECGV---------DKCDLCKYQFTTE 92 (177)
Q Consensus 35 ~~~~~~CRIC~~~~-~-~~L-i~PC~---C~Gs~~~VH~~CL~~Wi~~s~~---------~~CelC~~~y~~~ 92 (177)
++....|-||++.. + +.+ ...|. |. ...|..||.+|++..++ ..|+.|+.+....
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 34667999999766 2 444 24574 65 68999999999987532 5799999987643
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=95.43 E-value=0.0061 Score=46.88 Aligned_cols=46 Identities=22% Similarity=0.577 Sum_probs=36.1
Q ss_pred CeeEEcccCCCCcccc-cccccCccccccHHHHHHHHHHcCCCccCCCCCeeE
Q psy3116 39 TICRICYGADQQNLLS-ICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90 (177)
Q Consensus 39 ~~CRIC~~~~~~~Li~-PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~ 90 (177)
..|-||++...++... ||. ...|..|+.+|+.. +...|++|+..+.
T Consensus 55 ~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCcccChHhhCcCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 4899998777556554 664 46899999999984 3578999999985
No 43
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.37 E-value=0.0093 Score=53.25 Aligned_cols=50 Identities=18% Similarity=0.613 Sum_probs=40.6
Q ss_pred CeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEeeec
Q psy3116 39 TICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTERL 94 (177)
Q Consensus 39 ~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~~ 94 (177)
..|.||++...++.+.||.- ..|..|+.+|+.. +...|++|+.++.....
T Consensus 333 ~~C~ICle~~~~pv~lpCGH-----~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGH-----LMCTSCLTSWQES-EGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCC-----EECHHHHHHHHHH-TCSBCTTTCCBCCEEEE
T ss_pred CCCCccCcCCCCeEEeCCCC-----hhhHHHHHHHHhc-CCCCCCCCCCccCCcee
Confidence 68999988777788889864 3599999999985 56789999999876543
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.25 E-value=0.011 Score=47.99 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=40.4
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
....-.|-||++-..+|.+.||. ...-+.|+.+|+...+.. |++|+.++..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCCeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCch
Confidence 45667899998877889999973 234579999999886544 9999998864
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.16 E-value=0.0076 Score=46.39 Aligned_cols=50 Identities=20% Similarity=0.435 Sum_probs=39.8
Q ss_pred CCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 37 DMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 37 ~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
+...|.||++...++.+.||. ...+..|+.+|+.. +...|++|+..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 346899998877778877874 35789999999985 455899999998754
No 46
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=95.04 E-value=0.0052 Score=44.08 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=39.0
Q ss_pred CCCCeeEEcccCCCCcccc-cccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 36 EDMTICRICYGADQQNLLS-ICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~-PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
.+...|-||++...++... ||. ...|..|+.+|+..+ ..|++|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCcccccc
Confidence 3567899998777667665 774 357899999999764 7899999998753
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.00 E-value=0.0035 Score=45.48 Aligned_cols=50 Identities=16% Similarity=0.483 Sum_probs=37.6
Q ss_pred CCCCeeEEcccCCCCc-------ccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 36 EDMTICRICYGADQQN-------LLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~-------Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
.+...|-||++...++ ...||. ...|..|+.+|+..+ ..|++|+..+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC--SBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC--CCCCCCCCcCccc
Confidence 4567899998765223 566764 468999999999765 4899999988644
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.00 E-value=0.01 Score=42.94 Aligned_cols=50 Identities=22% Similarity=0.417 Sum_probs=39.4
Q ss_pred CCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 37 DMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 37 ~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
+...|-||++...++...||. ...|..|+.+|+... ...|++|+.++...
T Consensus 22 ~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCHh
Confidence 356899998777677777763 457999999999875 45799999998754
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=94.62 E-value=0.011 Score=43.24 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=39.2
Q ss_pred CCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 36 EDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
.+...|-||++...++...||. ...+..|+.+|+..++. .|++|+..+..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCH
Confidence 4456899998776667777753 45889999999987654 89999988764
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.61 E-value=0.015 Score=42.00 Aligned_cols=51 Identities=16% Similarity=0.477 Sum_probs=37.3
Q ss_pred CCCCCeeEEcccCCC-----Cc--ccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 35 DEDMTICRICYGADQ-----QN--LLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~-----~~--Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
+++...|-||++... .. ...||. ...|..|+.+|+..+ ..|++|+..+...
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCChh
Confidence 456788999986541 22 334552 569999999999875 5899999988643
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=93.78 E-value=0.062 Score=37.28 Aligned_cols=51 Identities=10% Similarity=-0.083 Sum_probs=40.6
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
..+.-.|-||++-..+|.+.||. ...-+.|+++|+.. ...|++|+.++...
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcCCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCChH
Confidence 45678999998777889999963 34668999999985 46899999988754
No 52
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=93.52 E-value=0.005 Score=44.55 Aligned_cols=51 Identities=14% Similarity=0.356 Sum_probs=39.6
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
..+...|-||++...++...||. ...|..|+.+|+.. +...|++|+..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 34457899998777667777864 35899999999964 35789999999864
No 53
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.35 E-value=0.033 Score=46.19 Aligned_cols=52 Identities=25% Similarity=0.678 Sum_probs=39.8
Q ss_pred CCCCeeEEcccCC-CCccccccc-ccCccccccHHHHHHHHHHcCCCccCCCCCeeEeee
Q psy3116 36 EDMTICRICYGAD-QQNLLSICQ-CKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93 (177)
Q Consensus 36 ~~~~~CRIC~~~~-~~~Li~PC~-C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~ 93 (177)
+.-+.|-||++-- .+ .-|. |. .-.|..|+.+|++.++...|+.|+..++...
T Consensus 178 ~~i~~C~iC~~iv~~g---~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG---QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TTCCBCTTTCSBCSSC---EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCCCcCcchhhHHhCC---cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 3578999997654 11 2232 54 5799999999999888889999999988764
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.89 E-value=0.012 Score=42.84 Aligned_cols=46 Identities=13% Similarity=0.342 Sum_probs=36.6
Q ss_pred CCCeeEEcccCCCCcccc-cccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 37 DMTICRICYGADQQNLLS-ICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 37 ~~~~CRIC~~~~~~~Li~-PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
+...|.||++...+|... ||. ...+..|+.+|+. ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCcc
Confidence 457899998777667766 774 4567899999987 689999999854
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=92.30 E-value=0.063 Score=35.30 Aligned_cols=50 Identities=14% Similarity=0.386 Sum_probs=36.1
Q ss_pred CCCCCeeEEcccCCCCcccc--cccccCccccccHHHHHHHHHHcCCCccCCCCCeeE
Q psy3116 35 DEDMTICRICYGADQQNLLS--ICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~--PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~ 90 (177)
.+++..|-||++...+..+. ||+=. .+=..|+.+|... ...|++|+.++.
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~----~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHL----MACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEE----EECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCCh----hhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 34667899999888555554 87421 1236999999974 457999999875
No 56
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=92.12 E-value=0.11 Score=41.65 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=41.1
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
..+.-.|-||++-..+|.+.||. ...=+.|+.+|+...+. .|++|+.++...
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~~ 154 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQD 154 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCGG
T ss_pred CcHhhcccCccccCCCCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCChh
Confidence 35667899998777789999973 34567999999988655 799999988653
No 57
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=91.88 E-value=0.081 Score=38.00 Aligned_cols=51 Identities=12% Similarity=-0.044 Sum_probs=40.6
Q ss_pred CCCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 34 DDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 34 ~~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
...+.-.|-||++-..+|.+.||. ...-+.|+.+|+.. ...|++|+.++..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 345677999998777889999963 34668999999973 5789999999874
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=90.66 E-value=0.05 Score=36.60 Aligned_cols=45 Identities=24% Similarity=0.587 Sum_probs=36.0
Q ss_pred CCCeeEEcccCCCCcccccccccCcccc-ccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 37 DMTICRICYGADQQNLLSICQCKGSIAY-VHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 37 ~~~~CRIC~~~~~~~Li~PC~C~Gs~~~-VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
+...|.||++...++...||. .. ....|+.+| ..|++|+..+...
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCCEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccCc
Confidence 346899999877778888984 23 788999999 7899999987643
No 59
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.19 E-value=0.048 Score=34.72 Aligned_cols=48 Identities=17% Similarity=0.400 Sum_probs=36.1
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
+.+...|.||++...++.+.||.= ..+..|+.+ ....|++|+..+.+.
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH-----~fC~~Ci~~-----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLH-----TLCSGCLEA-----SGMQCPICQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSC-----CSBTTTCSS-----SSSSCSSCCSSSSCC
T ss_pred cccCCCceEeCCccCCeEEcCCCC-----cccHHHHcc-----CCCCCCcCCcEeecC
Confidence 345678999988776677788642 467788877 367899999987754
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=89.30 E-value=0.14 Score=33.49 Aligned_cols=49 Identities=14% Similarity=0.351 Sum_probs=35.3
Q ss_pred CCCCeeEEcccCCCCcccc--cccccCccccccHHHHHHHHHHcCCCccCCCCCeeE
Q psy3116 36 EDMTICRICYGADQQNLLS--ICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~--PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~ 90 (177)
+....|.||++...+..+- ||.=. .+-..|+.+|.+.+ ..|++|+.++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~----~~C~~C~~~~~~~~--~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHL----VTCFHCARRLKKAG--ASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEE----EECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCH----hHHHHHHHHHHHhC--CcCCCcCchhh
Confidence 4567899999877444444 87521 24579999998653 68999999875
No 61
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=89.09 E-value=0.19 Score=35.84 Aligned_cols=51 Identities=14% Similarity=-0.002 Sum_probs=39.9
Q ss_pred CCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 36 EDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
.+.-.|-||++-..+|.+.||. | ...-+.|+++|+.. ...|++|+.++...
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCChh
Confidence 4567899998777889999865 1 23568999999985 46899999998743
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.78 E-value=0.26 Score=34.53 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=38.4
Q ss_pred CCCCCCeeEEcccCCCCccccc-ccccCccccccHHHHHHHHHHc----CCCccCC--CCCe
Q psy3116 34 DDEDMTICRICYGADQQNLLSI-CQCKGSIAYVHIECIERWLQEC----GVDKCDL--CKYQ 88 (177)
Q Consensus 34 ~~~~~~~CRIC~~~~~~~Li~P-C~C~Gs~~~VH~~CL~~Wi~~s----~~~~Cel--C~~~ 88 (177)
+....-.|-||++-..+|.+.| |. .-.-+.|+.+|+... +...|++ |...
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCCcEeECcCcCchhcCCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3456678999987767788886 74 235689999999875 4678999 9866
No 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=87.98 E-value=0.2 Score=38.31 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=38.3
Q ss_pred CCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 36 EDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
.+.-.|-||++...+|...||. ......|+.+|+..++. .|++|+..+..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCCC-----CHHHHHHHHHHHHhCCC-CCCCCccCcch
Confidence 3456899998777677776652 34788999999987644 89999988764
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.61 E-value=0.29 Score=32.53 Aligned_cols=48 Identities=17% Similarity=0.493 Sum_probs=35.7
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
.++...|.||++...+.++.||.=. .+-..|+.+ ...|++|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~----~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHT----CLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBC----CSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCCCEEEECCCCh----hhhHHHHhc------CCCCCCCCcchhce
Confidence 3456889999988877888998632 245588873 47899999987643
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.62 E-value=0.27 Score=32.80 Aligned_cols=44 Identities=27% Similarity=0.588 Sum_probs=33.0
Q ss_pred CCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEe
Q psy3116 38 MTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91 (177)
Q Consensus 38 ~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~ 91 (177)
...|.||++...++...||.=. .....|+.+ ...|++|+.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~----~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHL----VTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCC----CBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCH----HHHHHHhhC------CCCCccCCceecC
Confidence 3579999988877888898421 257899964 3789999998754
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.82 E-value=0.4 Score=33.24 Aligned_cols=50 Identities=22% Similarity=0.576 Sum_probs=35.9
Q ss_pred CCCCeeEEcccCC-CCccc--ccccccCccccccHHHHHHHHHHc---C---CCccCC--CCCeeE
Q psy3116 36 EDMTICRICYGAD-QQNLL--SICQCKGSIAYVHIECIERWLQEC---G---VDKCDL--CKYQFT 90 (177)
Q Consensus 36 ~~~~~CRIC~~~~-~~~Li--~PC~C~Gs~~~VH~~CL~~Wi~~s---~---~~~Cel--C~~~y~ 90 (177)
++...|-||++.. ....+ .||.- .....|+.+++..+ + ...|+. |+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH-----~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~ 63 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQC-----IFCTLCLKQYVELLIKEGLETAISCPDAACPKQGH 63 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTE-----EEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCE
T ss_pred CCCcCCcccCcccccccceEcCCCCC-----cccHHHHHHHHHHHhhcCCcccccCccccCCCCCc
Confidence 3456799999876 33344 37763 46679999999764 2 468999 999854
No 67
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=85.31 E-value=0.96 Score=32.78 Aligned_cols=53 Identities=26% Similarity=0.567 Sum_probs=38.6
Q ss_pred CCCCCCeeEEcccCC----CCccccccc-ccCccccccHHHHHHHHHHcCCCccCCCCCeeE
Q psy3116 34 DDEDMTICRICYGAD----QQNLLSICQ-CKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90 (177)
Q Consensus 34 ~~~~~~~CRIC~~~~----~~~Li~PC~-C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~ 90 (177)
.+.+..+|.||-+.- ++++.-.|. |. --|=+.|++-=+++ ++..|..|+++|.
T Consensus 12 ~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~---FPvCrpCyEYErke-G~q~CpqCktrYk 69 (93)
T 1weo_A 12 KNLDGQFCEICGDQIGLTVEGDLFVACNECG---FPACRPCYEYERRE-GTQNCPQCKTRYK 69 (93)
T ss_dssp SCCSSCBCSSSCCBCCBCSSSSBCCSCSSSC---CCCCHHHHHHHHHT-SCSSCTTTCCCCC
T ss_pred cccCCCccccccCccccCCCCCEEEeeeccC---ChhhHHHHHHHHhc-cCccccccCCccc
Confidence 355779999997653 566666665 42 23778999865544 6778999999997
No 68
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=82.43 E-value=0.12 Score=39.20 Aligned_cols=49 Identities=18% Similarity=0.394 Sum_probs=36.8
Q ss_pred CCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeE
Q psy3116 36 EDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~ 90 (177)
.+.-.|-||++...+|...||. ...+..|+.+|+.. +...|++|+.+..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCcEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 3556899998777667776654 34688999999964 4468999998753
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=80.69 E-value=0.22 Score=43.43 Aligned_cols=45 Identities=20% Similarity=0.504 Sum_probs=35.7
Q ss_pred CCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 38 MTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 38 ~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
...|.||++...++..-||.=. .....|+.+| ..|++|+..+.-.
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~----~fC~~C~~~~------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHL----VVCQECAPSL------RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCE----EECTTTGGGC------SBCTTTCCBCCEE
T ss_pred CCCCCccCCcCCceEEcCCCCh----hHhHHHHhcC------CcCCCCCCCccCe
Confidence 5789999988777888898642 2677999988 6899999988643
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=77.86 E-value=0.55 Score=39.94 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=38.8
Q ss_pred CCCeeEEcccCCCCcccc-cccccCccccccHHHHHHHHHHcCCCccCC--CCCeeEee
Q psy3116 37 DMTICRICYGADQQNLLS-ICQCKGSIAYVHIECIERWLQECGVDKCDL--CKYQFTTE 92 (177)
Q Consensus 37 ~~~~CRIC~~~~~~~Li~-PC~C~Gs~~~VH~~CL~~Wi~~s~~~~Cel--C~~~y~~~ 92 (177)
..-.|-||.+-..+|+.+ .|. ...=+.|+.+|+...+...|++ |+..+...
T Consensus 180 ~el~CPIcl~~f~DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred eeeECcCccCcccCCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 346899997766677765 664 2244689999998877889999 99988654
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=77.23 E-value=0.84 Score=29.78 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=33.6
Q ss_pred CeeEEcccCCCCcccc-cccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 39 TICRICYGADQQNLLS-ICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 39 ~~CRIC~~~~~~~Li~-PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
-.|-|+++-..+|.+. ||. .-.=+.|+++|+...+ +|++.+.+....
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCGG
T ss_pred EEecCCCCCCCCCEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCChh
Confidence 3577776665677777 433 3456799999998764 499999887643
No 72
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=76.52 E-value=0.58 Score=31.42 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=34.2
Q ss_pred CCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHH--cCCCccCCCCCe
Q psy3116 36 EDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQE--CGVDKCDLCKYQ 88 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~~~ 88 (177)
.....|.||.+++ .|+- |.+=-+..|..||.-.+.. .+.+.|..|...
T Consensus 10 ~~~~~C~vC~~~~--~ll~---Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGT--DVLR---CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCT--TCEE---CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCC--eEEE---CCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3456799997654 3442 3344479999999877765 368999999754
No 73
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=75.91 E-value=0.66 Score=31.59 Aligned_cols=45 Identities=13% Similarity=0.492 Sum_probs=33.8
Q ss_pred CCeeEEcccCCCCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEee
Q psy3116 38 MTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92 (177)
Q Consensus 38 ~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~ 92 (177)
...|.||++...++...||.=. ..=..|+.+| ..|++|+.++...
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~----~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHT----VCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBC----CBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcEEEECCCCH----HHHHHHHHhc------CcCCCCCchhhCe
Confidence 4689999987777888898632 1335888877 3999999987754
No 74
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=67.96 E-value=0.67 Score=33.41 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=27.8
Q ss_pred CCCCCCCeeEEcccCC-CCcccccccccCccccccHHHHHHHHH
Q psy3116 33 SDDEDMTICRICYGAD-QQNLLSICQCKGSIAYVHIECIERWLQ 75 (177)
Q Consensus 33 ~~~~~~~~CRIC~~~~-~~~Li~PC~C~Gs~~~VH~~CL~~Wi~ 75 (177)
++..+++.|.+|.+++ .++|+ -| .+=-+..|..||.-.+.
T Consensus 2 s~~~~~~~C~~C~~~g~~~~ll-~C--~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDLLDQF-FC--TTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCCCSCBTTTCCCCCTTTSE-EC--SSSCCEECTTTTTCCCC
T ss_pred CCCCCCCCCcCCCCCCCCcCCe-EC--CCCCCCcChHHhCCccc
Confidence 3466889999998776 34554 33 33347899999987654
No 75
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=67.87 E-value=1.7 Score=29.46 Aligned_cols=49 Identities=22% Similarity=0.569 Sum_probs=33.1
Q ss_pred CCCCCeeEEcccCCCCcccc--cccccCccccccHHHHHHHHHH--cCCCccCCCCCe
Q psy3116 35 DEDMTICRICYGADQQNLLS--ICQCKGSIAYVHIECIERWLQE--CGVDKCDLCKYQ 88 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~--PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~~~ 88 (177)
+.+...| ||.+.+.+.+|. -|.|+ ..+.|..|+. |.. .+.+.|+.|...
T Consensus 13 ~~~~~~C-~C~~~~~g~MI~CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TTSCCCS-TTCCCSCSSEECCSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCCEE-ECCCCCCCCEeEeeCCCCC--CccEecccCC--cCcCCCCCEECCCCCcc
Confidence 4566788 898765445664 22254 2689999998 443 368999999753
No 76
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=67.73 E-value=0.31 Score=34.47 Aligned_cols=51 Identities=24% Similarity=0.427 Sum_probs=33.3
Q ss_pred CCCCCeeEEcccCC---CCcccccccccCccccccHHHHHHHHHHcCCCccCCCCCe
Q psy3116 35 DEDMTICRICYGAD---QQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQ 88 (177)
Q Consensus 35 ~~~~~~CRIC~~~~---~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~ 88 (177)
..+...|.||.+++ ++.|+ -|. +=-..+|..|+.-=..-.+.+.|+.|...
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEE-ECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEE-ECC--CCCchhhcccCCCCccCCCceECccccCc
Confidence 45678999998764 23343 332 33357899999643333478889888654
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=67.66 E-value=0.3 Score=33.00 Aligned_cols=52 Identities=17% Similarity=0.366 Sum_probs=34.1
Q ss_pred CCCCCeeEEcccCC-CCcccccccccCccccccHHHHHHHHHHc--CCCccCCCCCee
Q psy3116 35 DEDMTICRICYGAD-QQNLLSICQCKGSIAYVHIECIERWLQEC--GVDKCDLCKYQF 89 (177)
Q Consensus 35 ~~~~~~CRIC~~~~-~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s--~~~~CelC~~~y 89 (177)
..+...|.+|...+ ++.+|. |.+=-.+.|..|+.-=.... +.+.|+.|....
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 44556799998776 334554 33444799999996433322 578899997654
No 78
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=64.96 E-value=0.58 Score=31.86 Aligned_cols=51 Identities=24% Similarity=0.375 Sum_probs=33.1
Q ss_pred CCCCCCeeEEcccCC---CCcccccccccCccccccHHHHHHHHHHcCCCccCCCCC
Q psy3116 34 DDEDMTICRICYGAD---QQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKY 87 (177)
Q Consensus 34 ~~~~~~~CRIC~~~~---~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~ 87 (177)
...+...|.||.+++ ++.|+- |. +=-+.+|..|+.-=..-.+.+.|+.|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~-CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILF-CD--MCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEE-CS--SSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEE-CC--CCCCccccccCCCCcCCCCCcCCccCcC
Confidence 356788999998764 344442 32 3336899999963223346788888754
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=64.83 E-value=1.1 Score=29.31 Aligned_cols=53 Identities=17% Similarity=0.498 Sum_probs=36.1
Q ss_pred CCCCCCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHH--cCCCccCCCCCe
Q psy3116 31 DSSDDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQE--CGVDKCDLCKYQ 88 (177)
Q Consensus 31 ~~~~~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~~~ 88 (177)
++..+.+...|.+|.+++ .|+. |.+=-+..|..||.-=+.. ++.+.|..|..+
T Consensus 4 ~~~~~~~~~~C~vC~~~g--~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 4 GSYETDHQDYCEVCQQGG--EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCSSCCCSSCTTTSCCS--SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CcccCCCCCCCccCCCCC--cEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 445567788999998754 3332 3344468999999864432 468999999653
No 80
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=57.08 E-value=7 Score=29.59 Aligned_cols=47 Identities=28% Similarity=0.401 Sum_probs=33.8
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHH------HH---HcCCCccCCCC
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERW------LQ---ECGVDKCDLCK 86 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~W------i~---~s~~~~CelC~ 86 (177)
+..+..|++|.++. +|+ -|.+--+-.|.+||.+= -+ .++.+.|-+|.
T Consensus 54 Dg~~~~C~vC~dGG--~Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG--NLI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TSCBSSCTTTCCCS--EEE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCcCeecCCCC--eeE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 56778899997765 444 12344478999999974 22 36789999994
No 81
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=55.58 E-value=5.7 Score=30.54 Aligned_cols=49 Identities=29% Similarity=0.411 Sum_probs=34.8
Q ss_pred CCCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHH---------HcCCCccCCCCC
Q psy3116 34 DDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQ---------ECGVDKCDLCKY 87 (177)
Q Consensus 34 ~~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~---------~s~~~~CelC~~ 87 (177)
++..+..|++|.+++ .|+ - |.+=-+-.|..||..=+. ..+.+.|..|..
T Consensus 59 ~Dg~~d~C~vC~~GG--~Ll-c--CD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGG--NLI-C--CDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCS--SEE-E--CSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCCC--cEE-e--CCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 366789999998776 444 2 222236889999996542 468999999963
No 82
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=53.02 E-value=1 Score=35.98 Aligned_cols=51 Identities=25% Similarity=0.515 Sum_probs=36.1
Q ss_pred CCCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHH--cCCCccCCCCCee
Q psy3116 34 DDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQE--CGVDKCDLCKYQF 89 (177)
Q Consensus 34 ~~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~~~y 89 (177)
++.+.+.|.+|.+++ .|+- |.|--+..|..||..-+.. .+.+.|..|...-
T Consensus 3 ~d~~~~~C~~C~~~g--~ll~---Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGG--DLLC---CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CCSSCSSBTTTCCCE--EEEE---CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCCC--ceEE---cCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 355778899998665 3432 5555578999999765543 4679999998653
No 83
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=52.14 E-value=0.64 Score=30.48 Aligned_cols=48 Identities=23% Similarity=0.569 Sum_probs=29.7
Q ss_pred CCCCCeeEEcccCCCCcccc--cccccCccccccHHHHHHHHHH--cCCCccCCCCC
Q psy3116 35 DEDMTICRICYGADQQNLLS--ICQCKGSIAYVHIECIERWLQE--CGVDKCDLCKY 87 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~--PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~~ 87 (177)
+++...| ||.+.+.+.+|. -|.|+ ..+.|..|+. |.. .+.+.|+.|..
T Consensus 7 ~~e~~~C-~C~~~~~g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSYGEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECCSEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCCCCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456667 898765455654 22343 2689999998 543 26778887743
No 84
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.05 E-value=2.6 Score=30.13 Aligned_cols=49 Identities=22% Similarity=0.569 Sum_probs=32.8
Q ss_pred CCCCCeeEEcccCCCCcccc--cccccCccccccHHHHHHHHHH--cCCCccCCCCCe
Q psy3116 35 DEDMTICRICYGADQQNLLS--ICQCKGSIAYVHIECIERWLQE--CGVDKCDLCKYQ 88 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~--PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~~~ 88 (177)
..+...| ||.+.+.+.+|. -|.|+ ..+.|..|+. |.. .+.+.|+.|...
T Consensus 33 ~~e~~yC-iC~~~~~g~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBCCSCCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCCcEE-ECCCCCCCCEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCc
Confidence 3455677 998766445654 23354 2689999998 433 368999999754
No 85
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=47.83 E-value=7.1 Score=28.11 Aligned_cols=34 Identities=29% Similarity=0.683 Sum_probs=23.2
Q ss_pred CCCCeeEEcccCC-------CCcccccccccCccccccHHHHHH
Q psy3116 36 EDMTICRICYGAD-------QQNLLSICQCKGSIAYVHIECIER 72 (177)
Q Consensus 36 ~~~~~CRIC~~~~-------~~~Li~PC~C~Gs~~~VH~~CL~~ 72 (177)
+..++|.+|+.++ .++|+. |.+=-+..|..||.-
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~---C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELIS---CADCGNSGHPSCLKF 43 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEE---CTTTCCEECHHHHTC
T ss_pred ccCccccccCCchhhCcCCCchhceE---hhhcCCCCCCchhcC
Confidence 3567899998653 346664 333347899999953
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=41.42 E-value=4.1 Score=25.16 Aligned_cols=45 Identities=24% Similarity=0.555 Sum_probs=28.7
Q ss_pred eeEEcccCC-CCcccccccccCccccccHHHHHHHHHH--cCCCccCCCCC
Q psy3116 40 ICRICYGAD-QQNLLSICQCKGSIAYVHIECIERWLQE--CGVDKCDLCKY 87 (177)
Q Consensus 40 ~CRIC~~~~-~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~~ 87 (177)
.|.+|..++ ++.|+. |.+=-+..|..||.-=+.. ++.+.|..|..
T Consensus 2 ~C~vC~~~~~~~~ll~---Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLIL---CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE---CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEE---CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588898766 444442 3344468999999532222 35788999864
No 87
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=39.49 E-value=2.4 Score=32.96 Aligned_cols=48 Identities=23% Similarity=0.519 Sum_probs=33.7
Q ss_pred CCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHH--cCCCccCCCCCe
Q psy3116 36 EDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQE--CGVDKCDLCKYQ 88 (177)
Q Consensus 36 ~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~~~ 88 (177)
.+.+.|.+|.+++ .|+ .|.|--+..|..||.--+.. ++.+.|..|...
T Consensus 2 ~~~~~C~~C~~~g--~ll---~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 2 PNEDWCAVCQNGG--ELL---CCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp CSCSSCTTTCCCS--SCE---ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCccccCCCCC--eee---ecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 3567899998665 333 24444578999998665543 467999999864
No 88
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=39.25 E-value=8.8 Score=25.38 Aligned_cols=35 Identities=23% Similarity=0.596 Sum_probs=20.3
Q ss_pred CCCCCCCeeEEcccCC-CCcccccc--cccCccccccHHHH
Q psy3116 33 SDDEDMTICRICYGAD-QQNLLSIC--QCKGSIAYVHIECI 70 (177)
Q Consensus 33 ~~~~~~~~CRIC~~~~-~~~Li~PC--~C~Gs~~~VH~~CL 70 (177)
++++....|-+|+... ++..---| .|+ .+.|..|+
T Consensus 3 ~~~~~~~~C~~C~~p~~~~~~mI~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 3 SSSDPVYPCGICTNEVNDDQDAILCEASCQ---KWFHRICT 40 (65)
T ss_dssp ------CBCTTTCSBCCTTSCEEEBTTTTC---CEEEHHHH
T ss_pred CCCCCcCcCccCCCccCCCCCeEecccCcc---ccCchhcc
Confidence 3456677899998875 33333345 354 79999997
No 89
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=35.13 E-value=9.1 Score=24.71 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=33.1
Q ss_pred CCCCCeeEEcccCC---CCcccccccccCccccccHHHHHHHH-----HHcCCCccCCCCC
Q psy3116 35 DEDMTICRICYGAD---QQNLLSICQCKGSIAYVHIECIERWL-----QECGVDKCDLCKY 87 (177)
Q Consensus 35 ~~~~~~CRIC~~~~---~~~Li~PC~C~Gs~~~VH~~CL~~Wi-----~~s~~~~CelC~~ 87 (177)
+.+...|.+|..++ ++.|+- |.+=-+.+|..|+.-=+ ...+.+.|..|..
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~---Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVI---CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEE---CSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE---CCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 56788999998764 344442 33334678999987433 2357788888854
No 90
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=34.78 E-value=9 Score=27.16 Aligned_cols=48 Identities=21% Similarity=0.566 Sum_probs=31.9
Q ss_pred CCCCCeeEEcccCCCCcccc--cccccCccccccHHHHHHHHHH--cCCCccCC-CCC
Q psy3116 35 DEDMTICRICYGADQQNLLS--ICQCKGSIAYVHIECIERWLQE--CGVDKCDL-CKY 87 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~--PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~Cel-C~~ 87 (177)
+.+...| ||.+.+.+.+|. -|.|. ..+.|..|+. |.. .+.+.|+. |..
T Consensus 23 ~~~~~yC-iC~~~~~g~MI~CD~c~C~--~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSYGPMVACDNPACP--FEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCSSSEECCCSSSCS--CSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCCCCEEEecCCCCc--cccCcCccCC--CCcCCCCCccCChhhcc
Confidence 4556778 998766445664 34454 3799999996 332 36789999 863
No 91
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=30.80 E-value=3.5 Score=26.81 Aligned_cols=49 Identities=33% Similarity=0.666 Sum_probs=32.3
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHH--cCCCccCCCCCe
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQE--CGVDKCDLCKYQ 88 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~~~ 88 (177)
+.+...|.+|.+++ .|+- |.+=-+..|..||.-=+.. .+.+.|..|..+
T Consensus 6 d~~~~~C~vC~~~g--~ll~---Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDGG--ELLC---CDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCCS--SCBC---CSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCCC--CEEE---cCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45678899998654 3331 3333467999999743332 367899999753
No 92
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.66 E-value=18 Score=17.53 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=9.8
Q ss_pred CccCCCCCeeEe
Q psy3116 80 DKCDLCKYQFTT 91 (177)
Q Consensus 80 ~~CelC~~~y~~ 91 (177)
..|+.|+..|.-
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 479999999863
No 93
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.54 E-value=11 Score=18.17 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=10.3
Q ss_pred CccCCCCCeeEee
Q psy3116 80 DKCDLCKYQFTTE 92 (177)
Q Consensus 80 ~~CelC~~~y~~~ 92 (177)
..|+.|+..|.-.
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 4699999998754
No 94
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=29.19 E-value=18 Score=17.29 Aligned_cols=12 Identities=42% Similarity=0.944 Sum_probs=9.4
Q ss_pred CccCCCCCeeEe
Q psy3116 80 DKCDLCKYQFTT 91 (177)
Q Consensus 80 ~~CelC~~~y~~ 91 (177)
..|+.|+..|.-
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 369999998863
No 95
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.41 E-value=21 Score=17.26 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=9.8
Q ss_pred CccCCCCCeeEe
Q psy3116 80 DKCDLCKYQFTT 91 (177)
Q Consensus 80 ~~CelC~~~y~~ 91 (177)
..|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 469999999863
No 96
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=27.75 E-value=20 Score=17.35 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=9.7
Q ss_pred CccCCCCCeeEe
Q psy3116 80 DKCDLCKYQFTT 91 (177)
Q Consensus 80 ~~CelC~~~y~~ 91 (177)
..|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 479999998863
No 97
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.65 E-value=26 Score=23.45 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=25.3
Q ss_pred CcccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEeee
Q psy3116 50 QNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93 (177)
Q Consensus 50 ~~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~ 93 (177)
+.|+-| .|+|.+.+.- ..+...|+-|+..|++..
T Consensus 9 eiL~CP-~ck~~L~~~~---------~~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 9 EVLACP-KDKGPLRYLE---------SEQLLVNERLNLAYRIDD 42 (67)
T ss_dssp CCCBCT-TTCCBCEEET---------TTTEEEETTTTEEEEEET
T ss_pred HHhCCC-CCCCcCeEeC---------CCCEEEcCCCCccccCCC
Confidence 445666 7888877642 356788999999999875
No 98
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=26.73 E-value=7.6 Score=29.61 Aligned_cols=50 Identities=18% Similarity=0.461 Sum_probs=33.1
Q ss_pred CCCCCeeEEcccCC--CCcccccccccCccccccHHHHHHHHHH---cCCCccCCCCCe
Q psy3116 35 DEDMTICRICYGAD--QQNLLSICQCKGSIAYVHIECIERWLQE---CGVDKCDLCKYQ 88 (177)
Q Consensus 35 ~~~~~~CRIC~~~~--~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~---s~~~~CelC~~~ 88 (177)
+++...| +|.... ++.+|.=-.|. .+.|..|+.-=-.. .+.+.|+.|...
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~---~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQ---NWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTC---CEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCC---chhChhhcCCchhhccCccCeecCCCcch
Confidence 4567789 998754 45566533454 79999999532222 468899999764
No 99
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.68 E-value=24 Score=16.97 Aligned_cols=12 Identities=58% Similarity=0.850 Sum_probs=9.5
Q ss_pred CccCCCCCeeEe
Q psy3116 80 DKCDLCKYQFTT 91 (177)
Q Consensus 80 ~~CelC~~~y~~ 91 (177)
..|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 469999998863
No 100
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=26.66 E-value=23 Score=17.13 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=9.7
Q ss_pred CccCCCCCeeEe
Q psy3116 80 DKCDLCKYQFTT 91 (177)
Q Consensus 80 ~~CelC~~~y~~ 91 (177)
..|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 469999999864
No 101
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=26.63 E-value=6.4 Score=31.02 Aligned_cols=47 Identities=30% Similarity=0.609 Sum_probs=32.7
Q ss_pred CCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHH--cCCCccCCCCCe
Q psy3116 37 DMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQE--CGVDKCDLCKYQ 88 (177)
Q Consensus 37 ~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~~~ 88 (177)
+++.|.+|.+++ .|+- |.|=-+..|..||.-=+.. .+.+.|..|...
T Consensus 1 s~~~C~~C~~~g--~ll~---Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 1 SATICRVCQKPG--DLVM---CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCCBTTTCCCS--SCCC---CTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCCcCccCCCCC--ceeE---CCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 357899998665 3332 4555578999999543322 478999999876
No 102
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.67 E-value=20 Score=17.58 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=9.7
Q ss_pred CccCCCCCeeEe
Q psy3116 80 DKCDLCKYQFTT 91 (177)
Q Consensus 80 ~~CelC~~~y~~ 91 (177)
..|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 469999999863
No 103
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.51 E-value=25 Score=17.94 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=10.5
Q ss_pred CCccCCCCCeeEe
Q psy3116 79 VDKCDLCKYQFTT 91 (177)
Q Consensus 79 ~~~CelC~~~y~~ 91 (177)
...|++|+..|.-
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 2elx_A 7 GYVCALCLKKFVS 19 (35)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCcchhCC
Confidence 3579999999873
No 104
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.39 E-value=28 Score=16.77 Aligned_cols=12 Identities=33% Similarity=0.894 Sum_probs=9.7
Q ss_pred CccCCCCCeeEe
Q psy3116 80 DKCDLCKYQFTT 91 (177)
Q Consensus 80 ~~CelC~~~y~~ 91 (177)
..|+.|+..|..
T Consensus 4 ~~C~~C~~~f~~ 15 (30)
T 2m0d_A 4 YQCDYCGRSFSD 15 (30)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCCcccCC
Confidence 469999999863
No 105
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.03 E-value=30 Score=16.48 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=9.2
Q ss_pred CccCCCCCeeE
Q psy3116 80 DKCDLCKYQFT 90 (177)
Q Consensus 80 ~~CelC~~~y~ 90 (177)
..|+.|+..|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 46999999886
No 106
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.54 E-value=11 Score=27.27 Aligned_cols=32 Identities=25% Similarity=0.625 Sum_probs=21.3
Q ss_pred CeeEEcccCC--------CCcccccccccCccccccHHHHHHH
Q psy3116 39 TICRICYGAD--------QQNLLSICQCKGSIAYVHIECIERW 73 (177)
Q Consensus 39 ~~CRIC~~~~--------~~~Li~PC~C~Gs~~~VH~~CL~~W 73 (177)
+.|.||++++ .++|+.==.|. +..|..||.-.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~---~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCG---RSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSC---CEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCC---CccchhhCCCh
Confidence 5789998654 23566422344 67899999765
No 107
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.17 E-value=32 Score=18.22 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=10.5
Q ss_pred CCccCCCCCeeEe
Q psy3116 79 VDKCDLCKYQFTT 91 (177)
Q Consensus 79 ~~~CelC~~~y~~ 91 (177)
...|+.|+..|.-
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elm_A 9 LYYCSQCHYSSIT 21 (37)
T ss_dssp EEECSSSSCEEEC
T ss_pred CeECCCCCcccCC
Confidence 3579999999974
No 108
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.16 E-value=19 Score=22.58 Aligned_cols=48 Identities=23% Similarity=0.592 Sum_probs=29.3
Q ss_pred CCCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHH--cCCCccCCCC
Q psy3116 34 DDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQE--CGVDKCDLCK 86 (177)
Q Consensus 34 ~~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~ 86 (177)
++.+...|.+|..++ .|+. |.+=-+..|..||..=+.. .+.+.|..|.
T Consensus 5 ~~~~~~~C~vC~~~g--~ll~---Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 5 SSGHEDFCSVCRKSG--QLLM---CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CCSSCCSCSSSCCSS--CCEE---CSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred cCCCCCCCccCCCCC--eEEE---cCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 356778899998654 3332 3344468899998743322 2456676663
No 109
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=22.92 E-value=31 Score=17.74 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=10.5
Q ss_pred CCccCCCCCeeEe
Q psy3116 79 VDKCDLCKYQFTT 91 (177)
Q Consensus 79 ~~~CelC~~~y~~ 91 (177)
...|++|+..|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 1srk_A 7 PFVCRICLSAFTT 19 (35)
T ss_dssp CEECSSSCCEESS
T ss_pred CeeCCCCCcccCC
Confidence 4579999999874
No 110
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.49 E-value=18 Score=17.76 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=10.2
Q ss_pred CccCCCCCeeEee
Q psy3116 80 DKCDLCKYQFTTE 92 (177)
Q Consensus 80 ~~CelC~~~y~~~ 92 (177)
..|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 4699999998744
No 111
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=22.69 E-value=15 Score=23.65 Aligned_cols=47 Identities=23% Similarity=0.605 Sum_probs=29.0
Q ss_pred CCCCCeeEEcccCCCCcccc--cccccCccccccHHHHHHHHHH--cCCCccCCCC
Q psy3116 35 DEDMTICRICYGADQQNLLS--ICQCKGSIAYVHIECIERWLQE--CGVDKCDLCK 86 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~--PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~ 86 (177)
+.+...| ||.+.+.+.+|. -|.|+ ..+.|..|+. |.. ++.+.|+.|.
T Consensus 6 ~~e~~yC-~C~~~~~g~mi~CD~~~C~--~~wfH~~Cvg--l~~~p~~~w~Cp~C~ 56 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSYGEMIGCDNPDCP--IEWFHFACVD--LTTKPKGKWFCPRCV 56 (59)
T ss_dssp --CCEET-TTTEECCSEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHH
T ss_pred CCCCcEE-ECCCCCCCCeeEeeCCCCC--CCCEecccCC--cccCCCCCEECcCcc
Confidence 3455667 898765455654 23354 1699999998 433 2577787774
No 112
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=22.42 E-value=35 Score=22.80 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=23.7
Q ss_pred cccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEeee
Q psy3116 51 NLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93 (177)
Q Consensus 51 ~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~ 93 (177)
.|.-| .|+|.+.+.- ..+...|+-|+..|++..
T Consensus 8 iL~CP-~ck~~L~~~~---------~~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 8 ILVCP-VTKGRLEYHQ---------DKQELWSRQAKLAYPIKD 40 (68)
T ss_dssp CCBCS-SSCCBCEEET---------TTTEEEETTTTEEEEEET
T ss_pred heECC-CCCCcCeEeC---------CCCEEEcCCCCcEecCCC
Confidence 44555 6788776632 246778999999999875
No 113
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=22.37 E-value=27 Score=16.82 Aligned_cols=12 Identities=17% Similarity=0.783 Sum_probs=9.7
Q ss_pred CccCCCCCeeEe
Q psy3116 80 DKCDLCKYQFTT 91 (177)
Q Consensus 80 ~~CelC~~~y~~ 91 (177)
..|+.|+..|.-
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 479999998863
No 114
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.93 E-value=32 Score=17.72 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=10.5
Q ss_pred CCccCCCCCeeEe
Q psy3116 79 VDKCDLCKYQFTT 91 (177)
Q Consensus 79 ~~~CelC~~~y~~ 91 (177)
...|++|+..|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elt_A 9 PYKCPQCSYASAI 21 (36)
T ss_dssp SEECSSSSCEESS
T ss_pred CCCCCCCCcccCC
Confidence 4579999999864
No 115
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.87 E-value=30 Score=16.85 Aligned_cols=12 Identities=42% Similarity=0.888 Sum_probs=9.7
Q ss_pred CccCCCCCeeEe
Q psy3116 80 DKCDLCKYQFTT 91 (177)
Q Consensus 80 ~~CelC~~~y~~ 91 (177)
..|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 479999998863
No 116
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.75 E-value=36 Score=22.87 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=23.9
Q ss_pred cccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEeee
Q psy3116 51 NLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93 (177)
Q Consensus 51 ~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~ 93 (177)
.|.-| .|+|.+.+.- ..+...|+-|+..|++..
T Consensus 8 iL~CP-~ck~~L~~~~---------~~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 8 ILVCP-VCKGRLEFQR---------AQAELVCNADRLAFPVRD 40 (70)
T ss_dssp CCBCT-TTCCBEEEET---------TTTEEEETTTTEEEEEET
T ss_pred heECC-CCCCcCEEeC---------CCCEEEcCCCCceecCCC
Confidence 45556 6888777632 246778999999999874
No 117
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=21.73 E-value=33 Score=23.03 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=23.6
Q ss_pred cccccccccCccccccHHHHHHHHHHcCCCccCCCCCeeEeee
Q psy3116 51 NLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93 (177)
Q Consensus 51 ~Li~PC~C~Gs~~~VH~~CL~~Wi~~s~~~~CelC~~~y~~~~ 93 (177)
.|.-| .|+|.+.+.- ..+...|+-|+..|++..
T Consensus 8 iL~CP-~ck~~L~~~~---------~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 8 ILACP-ICKGPLKLSA---------DKTELISKGAGLAYPIRD 40 (69)
T ss_dssp TCCCT-TTCCCCEECT---------TSSEEEETTTTEEEEEET
T ss_pred heeCC-CCCCcCeEeC---------CCCEEEcCCCCcEecCcC
Confidence 34455 6888777532 246778999999999875
No 118
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.53 E-value=25 Score=22.41 Aligned_cols=50 Identities=16% Similarity=0.300 Sum_probs=31.2
Q ss_pred CCCCCeeEEcccCC--CCcccccccccCccccccHHHHHHHHHH---cCCCccCCCCC
Q psy3116 35 DEDMTICRICYGAD--QQNLLSICQCKGSIAYVHIECIERWLQE---CGVDKCDLCKY 87 (177)
Q Consensus 35 ~~~~~~CRIC~~~~--~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~---s~~~~CelC~~ 87 (177)
++++..|.||.... ++.+|.==.| -.|.|..|+.-=... .....|+.|..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C---~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLC---EMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSS---CCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCC---CCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 45677899998665 4455552234 379999998543221 24567777754
No 119
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.38 E-value=34 Score=17.73 Aligned_cols=13 Identities=23% Similarity=0.876 Sum_probs=10.3
Q ss_pred CCccCCCCCeeEe
Q psy3116 79 VDKCDLCKYQFTT 91 (177)
Q Consensus 79 ~~~CelC~~~y~~ 91 (177)
...|++|+..|.-
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elv_A 9 LYDCHICERKFKN 21 (36)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 3579999999863
No 120
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=21.05 E-value=31 Score=17.97 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=10.5
Q ss_pred CCccCCCCCeeEe
Q psy3116 79 VDKCDLCKYQFTT 91 (177)
Q Consensus 79 ~~~CelC~~~y~~ 91 (177)
...|+.|+..|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4679999999863
No 121
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=26.50 E-value=20 Score=17.47 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=10.2
Q ss_pred CccCCCCCeeEee
Q psy3116 80 DKCDLCKYQFTTE 92 (177)
Q Consensus 80 ~~CelC~~~y~~~ 92 (177)
..|+.|+..|.-.
T Consensus 4 ~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 4 YVCIHCQRQFADP 16 (30)
Confidence 4699999998743
No 122
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=20.96 E-value=25 Score=22.81 Aligned_cols=49 Identities=24% Similarity=0.635 Sum_probs=31.8
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHH--cCCCccCCCCCe
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQE--CGVDKCDLCKYQ 88 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~~~ 88 (177)
+.+...|.+|.+++ .|+. |.+=-+..|..||..=+.. ++.+.|..|...
T Consensus 5 ~~~~~~C~vC~~~g--~ll~---CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDGG--ELIC---CDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCCS--SCEE---CSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCCC--CEEE---cCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45678999998664 3331 3344468899999743322 367888888643
No 123
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.88 E-value=5.6 Score=26.63 Aligned_cols=45 Identities=24% Similarity=0.547 Sum_probs=26.7
Q ss_pred eeEEcccCC-CCcccccccccCccccccHHHHHHHHHH--cC-CCccCCCCC
Q psy3116 40 ICRICYGAD-QQNLLSICQCKGSIAYVHIECIERWLQE--CG-VDKCDLCKY 87 (177)
Q Consensus 40 ~CRIC~~~~-~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~--s~-~~~CelC~~ 87 (177)
.|.+|...+ ++.|+ -|. +=-+..|..||.-=+.. ++ .+.|..|..
T Consensus 20 ~C~~C~~~~~~~~ll-~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQL-MCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEE-ECT--TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEE-EcC--CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456776554 34444 333 33367899998632222 35 788888864
No 124
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.87 E-value=32 Score=17.97 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=10.5
Q ss_pred CCccCCCCCeeEe
Q psy3116 79 VDKCDLCKYQFTT 91 (177)
Q Consensus 79 ~~~CelC~~~y~~ 91 (177)
...|++|+..|.-
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 4579999999863
No 125
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.74 E-value=12 Score=25.94 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=35.9
Q ss_pred CCCCeeEEcccCC---CCcccccccccCccccccHHHHHHHHH------HcCCCccCCCCCeeEe
Q psy3116 36 EDMTICRICYGAD---QQNLLSICQCKGSIAYVHIECIERWLQ------ECGVDKCDLCKYQFTT 91 (177)
Q Consensus 36 ~~~~~CRIC~~~~---~~~Li~PC~C~Gs~~~VH~~CL~~Wi~------~s~~~~CelC~~~y~~ 91 (177)
+....|.+|..++ ++.|+- |.+=-+..|+.||.-=+. -.+.+.|..|......
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCCcCCCCCCCCCCCCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 3467899998775 245554 333336889999975543 2478999999776543
No 126
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=20.72 E-value=14 Score=26.08 Aligned_cols=50 Identities=30% Similarity=0.597 Sum_probs=35.3
Q ss_pred CCCCCeeEEcccCCCCcccccccccCccccccHHHHHHHHHH--cCCCccCCCCCee
Q psy3116 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQE--CGVDKCDLCKYQF 89 (177)
Q Consensus 35 ~~~~~~CRIC~~~~~~~Li~PC~C~Gs~~~VH~~CL~~Wi~~--s~~~~CelC~~~y 89 (177)
+.+...|.+|.+++ .|+- |.+=-+-.|..||.-=+.. .+.+.|..|...-
T Consensus 22 d~n~~~C~vC~~~g--~LL~---CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 22 DDSATICRVCQKPG--DLVM---CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSCCSSSCSSS--CCEE---CTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCCcCcCcCCCC--CEEE---CCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 56778999998765 3442 5555578999999543332 3689999998753
No 127
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.22 E-value=33 Score=17.64 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=10.5
Q ss_pred CCccCCCCCeeEe
Q psy3116 79 VDKCDLCKYQFTT 91 (177)
Q Consensus 79 ~~~CelC~~~y~~ 91 (177)
...|++|+..|.-
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 4689999998863
No 128
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=20.04 E-value=32 Score=18.96 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=12.0
Q ss_pred CCcccccccccCccccc
Q psy3116 49 QQNLLSICQCKGSIAYV 65 (177)
Q Consensus 49 ~~~Li~PC~C~Gs~~~V 65 (177)
.+.--+||.|+|--.|.
T Consensus 7 pnaachpc~c~~rp~yc 23 (26)
T 1p1p_A 7 PNAACHPCSCKDRPSYC 23 (26)
T ss_dssp CCSSCCTTTSTTCCGGG
T ss_pred CCccccccccCCCCCcc
Confidence 45566899999865553
Done!