RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3116
(177 letters)
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 77.8 bits (192), Expect = 5e-20
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 34 DDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91
+DED+ +C IC C C G + VH C+ WL C +C + T
Sbjct: 2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 76.9 bits (189), Expect = 2e-19
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 28 DKPDSSDDEDMTICRICY--GADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLC 85
S ICRIC+ G D+ L++ C C GS+ +VH C+++W++ C+LC
Sbjct: 5 SSGTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC 64
Query: 86 KYQFTTER 93
KY+F E
Sbjct: 65 KYEFIMET 72
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 34.5 bits (79), Expect = 0.002
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 32 SSDDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91
+ + + IC IC+ Q S C + H+ C+ ++ Q +C C +
Sbjct: 9 ETYPDAVKICNICHSLLIQGQ-SCETCGIRM---HLPCVAKYFQSNAEPRCPHCNDYWPH 64
Query: 92 E 92
E
Sbjct: 65 E 65
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.003
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 103 LLSWVKHVDNREDMEEMLTDFAATFLFS-PFIILLTLSGYQTFSN 146
+L W+++ N D D+ + S P I ++ L+ Y +
Sbjct: 215 ILEWLENPSNTPD-----KDYLLSIPISCPLIGVIQLAHYVVTAK 254
Score = 33.5 bits (76), Expect = 0.029
Identities = 17/125 (13%), Positives = 31/125 (24%), Gaps = 46/125 (36%)
Query: 22 KLMIQLDKPDSSDDEDMTIC-----RICYGADQQNLLSICQCKG-------SIA------ 63
M D + + R+ Q+ L + + G I
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Query: 64 --YV---H---IECIERWLQECGVDKCDLCKYQFTTERLPTQTKLKSLLSWVKHVDNRED 115
YV ++ + L + K D+ + L L E+
Sbjct: 1851 QQYVAAGDLRALDTVTNVLNFIKLQKIDIIE-------LQKSLSL-------------EE 1890
Query: 116 MEEML 120
+E L
Sbjct: 1891 VEGHL 1895
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 35.6 bits (81), Expect = 0.005
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 13/82 (15%)
Query: 22 KLMIQLDKPDSSDDEDMTICRICYG---ADQQNLLSICQCKGSIAYVHIECIERWLQECG 78
K D D+E++ C IC+ + L C + H C+E W +
Sbjct: 293 PDWSDGPKLDEEDNEELR-CNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLM 351
Query: 79 VDK---------CDLCKYQFTT 91
K C CK + +T
Sbjct: 352 DGKTFLEVSFGQCPFCKAKLST 373
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 32.3 bits (73), Expect = 0.020
Identities = 16/69 (23%), Positives = 21/69 (30%), Gaps = 14/69 (20%)
Query: 28 DKPDSSDDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECI-------ERWLQECGVD 80
S ++ +C IC + QN I C VH EC +WL
Sbjct: 15 SGSSQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWL------ 68
Query: 81 KCDLCKYQF 89
C C
Sbjct: 69 -CRHCLQSR 76
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 33.6 bits (76), Expect = 0.021
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 35 DEDMTICRICYGADQQNLLSICQ-CKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTE 92
+ + IC IC+ Q C+ C + H+ C+ ++ Q +C C + E
Sbjct: 177 PDAVKICNICHSLLIQGQ--SCETCGIRM---HLPCVAKYFQSNAEPRCPHCNDYWPHE 230
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin
regulator, metal-binding, finger, signaling protein;
NMR {Homo sapiens}
Length = 71
Score = 30.2 bits (68), Expect = 0.078
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 28 DKPDSSDDEDMTICRICYGADQQNLLSICQCKGSIAYVHIEC 69
S DED +C IC + QN I C VH EC
Sbjct: 7 HHMQSLIDED-AVCSICMDGESQNSNVILFCDMCNLAVHQEC 47
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 30.0 bits (67), Expect = 0.12
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 28 DKPDSSDDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDK------ 81
D + + + C +C + + +C+ H +C + + + V+
Sbjct: 7 GADDFAMEMGLA-CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWY 65
Query: 82 CDLCKYQFTTERLPTQTKLKS 102
C C Q Q S
Sbjct: 66 CARCTRQMKRMAQKNQKSGPS 86
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 27.4 bits (61), Expect = 0.70
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 66 HIECIERWLQECGVDKCDLCKYQ 88
H +C+ +WL+ V C LC
Sbjct: 41 HRKCLIKWLEVRKV--CPLCNMP 61
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 78
Score = 27.4 bits (61), Expect = 0.86
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 66 HIECIERWLQECGVDKCDLCKYQFTTE 92
H CI WL++ C +C+ T +
Sbjct: 41 HDSCIVPWLEQHD--SCPVCRKSLTGQ 65
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.93
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 23/77 (29%)
Query: 83 DL-CKYQFTTERLPTQTKLKSLLSWVKHVDNREDMEEML---TDFAATFLFSPFIILLTL 138
+ CK Q KS+LS +E+++ ++ + T F LL+
Sbjct: 32 NFDCKD--------VQDMPKSILS-------KEEIDHIIMSKDAVSGTLRL--FWTLLSK 74
Query: 139 --SGYQTFSNNAIRLDY 153
Q F +R++Y
Sbjct: 75 QEEMVQKFVEEVLRINY 91
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 28.8 bits (65), Expect = 1.1
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 87 YQFTTERLPTQTKLKSLLSWVKHVDNREDMEEMLTDFAATF 127
YQ R P+ L W +D +E ++E L F T
Sbjct: 613 YQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 653
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 27.3 bits (61), Expect = 1.2
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 66 HIECIERWLQECGVDKCDLCKYQF 89
H C+ WLQ+ G C +C+ F
Sbjct: 66 HKPCVSIWLQKSGT--CPVCRCMF 87
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase,
Zn binding domain, metal zinc, zinc-finger, metal
binding protein; NMR {Homo sapiens}
Length = 69
Score = 26.6 bits (59), Expect = 1.2
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 66 HIECIERWLQECGVDKCDLCKYQFTTERLPTQT 98
H C+++WL KC +C+ + LP+++
Sbjct: 40 HQVCVDQWLITNK--KCPICRVDIEAQ-LPSES 69
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 26.6 bits (59), Expect = 1.3
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 66 HIECIERWLQECGVDKCDLCKYQFTT 91
CI RW+++ C LCK +
Sbjct: 29 CYVCITRWIRQ--NPTCPLCKVPVES 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 27.5 bits (60), Expect = 1.3
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 19/76 (25%)
Query: 27 LDKPDSSDDEDMTICR-------------ICYGADQQNLLSICQCKGSIAYVHIECIERW 73
++ + +ED IC + + +C H+ C+
Sbjct: 17 TEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSH---AFHLLCLLAM 73
Query: 74 LQE---CGVDKCDLCK 86
G +C CK
Sbjct: 74 YCNGNKDGSLQCPSCK 89
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 26.7 bits (59), Expect = 1.3
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 16/72 (22%)
Query: 31 DSSDDEDMTICRICY-----GADQQNLLSICQCKGSIAYVHI---ECIERWLQECGVDKC 82
C IC L+ +C H+ +C+ L+ C
Sbjct: 3 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECG------HVFCSQCLRDSLKNAN--TC 54
Query: 83 DLCKYQFTTERL 94
C+ + +R
Sbjct: 55 PTCRKKINHKRY 66
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 26.1 bits (58), Expect = 1.8
Identities = 6/22 (27%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 66 HIECIERWLQECGVDKCDLCKY 87
H +C+++WL+ C +C+
Sbjct: 49 HAKCVDKWLKANRT--CPICRA 68
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 26.8 bits (59), Expect = 2.3
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 14/80 (17%)
Query: 24 MIQLDKPDSSDDEDMTICRICYGADQQNLLSICQ---CKGSIAYVHIECIERWLQECGVD 80
++ +D P C+IC + + C+ C+ CI R L+ G
Sbjct: 11 LLAVDFPAHFVKS--ISCQICEHILADPVETSCKHLFCR--------ICILRCLKVMG-S 59
Query: 81 KCDLCKYQFTTERLPTQTKL 100
C C+Y L + K
Sbjct: 60 YCPSCRYPCFPTDLESPVKS 79
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 25.9 bits (57), Expect = 2.5
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 66 HIECIERWLQECGVDKCDLCKYQFTTERL 94
+C+ L+ C C+ + +R
Sbjct: 33 CSQCLRDSLKNAN--TCPTCRKKINHKRY 59
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 25.4 bits (56), Expect = 3.0
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 66 HIECIERWLQECGVDKCDLCKYQ 88
+CI++W C +C+ Q
Sbjct: 37 CQKCIDKWSDRH--RNCPICRLQ 57
>1luc_A Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio
harveyi} SCOP: c.1.16.1 PDB: 1brl_A 3fgc_A*
Length = 355
Score = 27.0 bits (60), Expect = 3.2
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 60 GSIAYVHIECIERWLQECGVDKCDLCKYQFTTERLPTQTKLKSL 103
G+ I I++ + G+D C ++ + + S+
Sbjct: 302 GTPEEC-IAIIQQDIDATGIDNI-CCGFEAN---GSEEEIIASM 340
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 26.4 bits (57), Expect = 3.2
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 41 CRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLC 85
C+ + ++ + A+ H CI RWL+ V C L
Sbjct: 65 CQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQV--CPLD 106
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 26.3 bits (57), Expect = 3.3
Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 66 HIECIERWLQECGVDKCDLC 85
H CI RWL+ V C L
Sbjct: 78 HFHCISRWLKTRQV--CPLD 95
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 26.0 bits (57), Expect = 3.4
Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 13/72 (18%)
Query: 27 LDKPDSSDDEDMTICRICYG-ADQQNLLSICQ---CKGSIAYVHIECIERWLQECGVDKC 82
+D+ ++ C IC L C C CI RWL E +C
Sbjct: 11 MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCF--------SCIRRWLTE-QRAQC 61
Query: 83 DLCKYQFTTERL 94
C+ L
Sbjct: 62 PHCRAPLQLREL 73
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 27.1 bits (60), Expect = 3.6
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 31 DSSDDEDMTICRIC-----YGADQQNLLS-ICQCKGSIAYVHI 67
D SD + +C IC + + CQ + + V++
Sbjct: 1142 DCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYL 1184
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR
{Pseudomonas fluorescens}
Length = 212
Score = 26.4 bits (58), Expect = 4.6
Identities = 3/27 (11%), Positives = 11/27 (40%)
Query: 150 RLDYYIGITYSSTLEFEVPNVRELTEY 176
+ + I ++ + P ++ L +
Sbjct: 172 GVSRHFSIQLAADAIYTWPTLKSLADE 198
>2yzv_A ADP-ribosylglycohydrolase; all alpha protein, structural genomics,
NPPSFA, N project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 2cwc_A
2yzw_A
Length = 303
Score = 26.5 bits (59), Expect = 5.5
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 106 WVKHVDNREDMEEMLTDFAATFLFSP 131
W++ + RE+ME + + SP
Sbjct: 276 WLRALHLREEMEALALALYRMSMASP 301
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 26.8 bits (59), Expect = 5.8
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 31 DSSDDEDMTICRIC-----YGADQQNLL--SICQCKGSIAYVHI 67
++SD + IC IC N C K I +HI
Sbjct: 1153 EASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHI 1196
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 25.1 bits (54), Expect = 6.1
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 30 PDSSDDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQF 89
ED C +C + + ++ C C R + C C+ +
Sbjct: 3 RSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENG-LCPACRKPY 60
Query: 90 TTE 92
+
Sbjct: 61 PED 63
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 24.5 bits (54), Expect = 6.5
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 66 HIECIERWLQECGVDKCDLCK 86
H EC++ WL C LC+
Sbjct: 32 HAECVDMWLGSHST--CPLCR 50
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P,
ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast,
tRNA; 2.70A {Saccharomyces cerevisiae}
Length = 158
Score = 25.9 bits (56), Expect = 6.8
Identities = 18/73 (24%), Positives = 28/73 (38%)
Query: 1 MRTNDDLSVTSFNSMGTKIFDKLMIQLDKPDSSDDEDMTICRICYGADQQNLLSICQCKG 60
T+ S N K +KL Q++ D S +C YG Q +LSI +
Sbjct: 40 NSTSIQYHGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFK 99
Query: 61 SIAYVHIECIERW 73
+ + I +W
Sbjct: 100 KGYIKNNKKIYQW 112
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 26.0 bits (58), Expect = 7.2
Identities = 7/14 (50%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 112 NREDMEEMLTDFAA 125
R+D++E L FAA
Sbjct: 288 TRKDLQEAL-QFAA 300
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 24.5 bits (53), Expect = 7.3
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 16/71 (22%)
Query: 30 PDSSDDEDMTICRICY-----GADQQNLLSICQCKGSIAYVHI---ECIERWLQECGVDK 81
C IC L+ +C H+ +C+ L+ +
Sbjct: 7 GTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECG------HVFCSQCLRDSLKNA--NT 58
Query: 82 CDLCKYQFTTE 92
C C+ + +
Sbjct: 59 CPTCRKKINHK 69
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 24.9 bits (54), Expect = 8.1
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 66 HIECIERWLQECGVDKCDLCKYQFTTERL 94
H C+ W+++ C LC+ + +R+
Sbjct: 53 HNCCMSLWVKQNNR--CPLCQQDWVVQRI 79
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 26.0 bits (56), Expect = 8.3
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 18 KIFDKLMIQLDKPDSSDDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQEC 77
+ ++ + +E C IC + +LL + S + C + +
Sbjct: 438 EALIAAGKEIIWHGRTKEEPAHYCSIC-EVEVFDLLFVTNESNSRKTYIVHCQDCARKTS 496
Query: 78 GVDKCDLCKYQFTTERLPT 96
G + + Q+ E L
Sbjct: 497 GNLENFVVLEQYKMEDLMQ 515
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.412
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,615,369
Number of extensions: 142477
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 61
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)