RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3116
(177 letters)
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 53.3 bits (127), Expect = 6e-11
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 34 DDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91
+DED+ +C IC C C G + VH C+ WL C +C + T
Sbjct: 2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 30.6 bits (69), Expect = 0.013
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 36 EDMTICRICYG--ADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFT 90
+D C +C D + + +C H EC++ WL C LC+
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCG---HGFHAECVDMWLGSH--STCPLCRLTVV 54
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 30.2 bits (67), Expect = 0.042
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 28 DKPDSSDDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVD------K 81
D + + + C +C + + +C+ H +C + + + V+
Sbjct: 7 GADDFAMEMGLA-CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWY 65
Query: 82 CDLCKYQFTTERLPTQTKLKS 102
C C Q Q S
Sbjct: 66 CARCTRQMKRMAQKNQKSGPS 86
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 30.1 bits (67), Expect = 0.046
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 36 EDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTERLP 95
E + C C + + + C+ C+ + C +C + L
Sbjct: 20 EKLLRCSRCTN-ILREPVCLGGCEHIF---CSNCVSDCIG----TGCPVCYTPAWIQDLK 71
Query: 96 TQTKLKSLLSWVK 108
+L S++
Sbjct: 72 INRQLDSMIQLCS 84
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 29.7 bits (66), Expect = 0.070
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 33 SDDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQE-CGVDKCDLCKYQFTT 91
+ + + C IC ++ + + C C+ + L + G +C LCK T
Sbjct: 16 NAMQKILECPICLELIKEPVSTKCDH-----IFCKFCMLKLLNQKKGPSQCPLCKNDITK 70
Query: 92 ERLPTQTKLKSLLS 105
L T+ L+
Sbjct: 71 RSLQESTRFSQLVE 84
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 28.8 bits (64), Expect = 0.090
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 31 DSSDDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCK 86
+ + D + +C ++ + I + H C+ + G C C+
Sbjct: 8 EFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCR 63
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 28.6 bits (63), Expect = 0.099
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 4/65 (6%)
Query: 34 DDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93
DD+ C+ + L + C + C++ G C C
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCG---HTLCESCVDLLFV-RGAGNCPECGTPLRKSN 57
Query: 94 LPTQT 98
Q
Sbjct: 58 FRVQL 62
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 28.4 bits (63), Expect = 0.14
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 35 DEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTERL 94
+C+IC D+ + C + C+ W + C C+ +
Sbjct: 20 GSTFQLCKICAENDKDVKIEPCGH-----LMCTSCLTSWQES-EGQGCPFCRCEIKGTEP 73
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 27.8 bits (61), Expect = 0.24
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 41 CRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTTER 93
C+ + ++ + A+ H CI RWL+ V C L ++ ++
Sbjct: 38 CQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQV--CPLDNREWEFQK 87
>d1p7hl2 b.2.5.3 (L:393-575) T-cell transcription factor NFAT1
(NFATC), DNA-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 183
Score = 28.7 bits (64), Expect = 0.25
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 11 SFNSMGTKIFDKLMIQLDKPDSSDDEDMTICRICYGA 47
+ + G I+L K ++ T R+ +
Sbjct: 120 TIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRV 156
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 26.4 bits (58), Expect = 0.55
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 41 CRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91
C IC D N C + CI RW+++ C LCK +
Sbjct: 8 CPICLE-DPSNYSMALPCLHAF---CYVCITRWIRQNP--TCPLCKVPVES 52
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 26.1 bits (56), Expect = 1.5
Identities = 11/76 (14%), Positives = 19/76 (25%), Gaps = 13/76 (17%)
Query: 27 LDKPDSSDDEDMTICRICYGADQQNLLSICQCKGSIAYV----------HIECIERWLQE 76
++ + +ED IC V H+ C+
Sbjct: 17 TEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76
Query: 77 ---CGVDKCDLCKYQF 89
G +C CK +
Sbjct: 77 GNKDGSLQCPSCKTIY 92
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 25.4 bits (55), Expect = 1.8
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 6/72 (8%)
Query: 32 SSDDEDMTICRICYGADQQNLLSICQCKGSIAYVHIECIERWLQECGVDKCDLCKYQFTT 91
S + + C I + ++ I++WL G C +
Sbjct: 2 SPEFPEYFRCPISLELMKDPVIVSTGQ-----TYERSSIQKWLDA-GHKTCPKSQETLLH 55
Query: 92 ERLPTQTKLKSL 103
L LKSL
Sbjct: 56 AGLTPNYVLKSL 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.412
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 652,462
Number of extensions: 28849
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 23
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)