BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3119
(187 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IVV7|GID4_HUMAN Glucose-induced degradation protein 4 homolog OS=Homo sapiens
GN=GID4 PE=2 SV=1
Length = 300
Score = 328 bits (840), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 152/189 (80%), Positives = 173/189 (91%), Gaps = 2/189 (1%)
Query: 1 NSKQPGVTGTLLYNGSRFQGHQKSKGNSYEIEVV--HVDEENSYLCGYLKIKGLTEEYPT 58
N++QPGV +LLY+GS+F+GHQKSKGNSY++EVV HVD NSYLCGYLKIKGLTEEYPT
Sbjct: 111 NTQQPGVATSLLYSGSKFRGHQKSKGNSYDVEVVLQHVDTGNSYLCGYLKIKGLTEEYPT 170
Query: 59 LTTFFDGEIISKKYPFLTRKWDADEDVDRKHWGKFSSFYDYSKTFNSDSFDYDSLKDTDF 118
LTTFF+GEIISKK+PFLTRKWDADEDVDRKHWGKF +FY Y+K+FNSD FDY+ LK+ D+
Sbjct: 171 LTTFFEGEIISKKHPFLTRKWDADEDVDRKHWGKFLAFYQYAKSFNSDDFDYEELKNGDY 230
Query: 119 VFMRWKEHFLVPDHTIKDINGASFAGFYYICFQKSAATIEGYYFHRSSEWFQSLTLCHVP 178
VFMRWKE FLVPDHTIKDI+GASFAGFYYICFQKSAA+IEGYY+HRSSEW+QSL L HVP
Sbjct: 231 VFMRWKEQFLVPDHTIKDISGASFAGFYYICFQKSAASIEGYYYHRSSEWYQSLNLTHVP 290
Query: 179 DHSLQIYEF 187
+HS IYEF
Sbjct: 291 EHSAPIYEF 299
>sp|Q9CPY6|GID4_MOUSE Glucose-induced degradation protein 4 homolog OS=Mus musculus
GN=Gid4 PE=2 SV=1
Length = 217
Score = 326 bits (836), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 152/189 (80%), Positives = 173/189 (91%), Gaps = 2/189 (1%)
Query: 1 NSKQPGVTGTLLYNGSRFQGHQKSKGNSYEIEVV--HVDEENSYLCGYLKIKGLTEEYPT 58
N++QPGV +LLY+GS+F+GHQKSKGNSY++EVV HVD NSYLCGYLKIKGLTEEYPT
Sbjct: 28 NTQQPGVATSLLYSGSKFRGHQKSKGNSYDVEVVLQHVDTGNSYLCGYLKIKGLTEEYPT 87
Query: 59 LTTFFDGEIISKKYPFLTRKWDADEDVDRKHWGKFSSFYDYSKTFNSDSFDYDSLKDTDF 118
LTTFF+GEIISKK+PFLTRKWDADEDVDRKHWGKF +FY Y+K+FNSD FDY+ LK+ D+
Sbjct: 88 LTTFFEGEIISKKHPFLTRKWDADEDVDRKHWGKFLAFYQYAKSFNSDDFDYEELKNGDY 147
Query: 119 VFMRWKEHFLVPDHTIKDINGASFAGFYYICFQKSAATIEGYYFHRSSEWFQSLTLCHVP 178
VFMRWKE FLVPDHTIKDI+GASFAGFYYICFQKSAA+IEGYY+HRSSEW+QSL L HVP
Sbjct: 148 VFMRWKEQFLVPDHTIKDISGASFAGFYYICFQKSAASIEGYYYHRSSEWYQSLNLTHVP 207
Query: 179 DHSLQIYEF 187
+HS IYEF
Sbjct: 208 EHSAPIYEF 216
>sp|Q10079|YANE_SCHPO Uncharacterized protein C3H1.14 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC3H1.14 PE=4 SV=2
Length = 195
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 16/192 (8%)
Query: 10 TLLYNGSRFQGHQKSKGNS---YEIEVVHVDEENSYLCGYLKIKGLTEEYPTLTTFFDGE 66
+ L NG++FQG QK +S + ++HV+ S LCG++ + + +LTT+F+ E
Sbjct: 5 SFLRNGAKFQGKQKGVSSSTLEVHVTILHVNLAKSMLCGFIHVSYTSPNNTSLTTYFEAE 64
Query: 67 IISKKYPFLTR--KWDADEDVDRKHWGKFSSFYDYSKTFNSDSFD-YDSLKDTDFVFMRW 123
II ++ F T+ +W A E++D +HW + + K YD L + V+MRW
Sbjct: 65 IIGNRFTFETKWPEWGASEEIDNRHWKRLGALKSNGKDIPLRLIQPYDPL-SRETVYMRW 123
Query: 124 KEHFLVPDHTIKDIN-------GASFAGFYYICFQKSAATIEGYYFHRS-SEWFQSLTLC 175
KE ++ D T+ N G S+ GFYYI F +S I+GYY+H S E L L
Sbjct: 124 KELAML-DKTVDYQNHNQSFPFGISYEGFYYISFSQSTGKIKGYYYHHSEPEKVLFLELN 182
Query: 176 HVPDHSLQIYEF 187
+ D + + EF
Sbjct: 183 PIIDRTFPVIEF 194
>sp|P53242|YG29_YEAST Uncharacterized protein YGR066C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YGR066C PE=4 SV=1
Length = 292
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 35/208 (16%)
Query: 12 LYNGSRFQGHQKSKGNSYEIEVVHVDEEN-----------SYLCGYLKIKGLTEEYPTLT 60
L G RF G Q SK Y +EV +D N ++ G IK LT +
Sbjct: 79 LRPGLRFGGSQSSKYTYYTVEV-KIDTVNLPLYKDSRSLDPHVTGTFTIKNLTPVLDKVV 137
Query: 61 TFFDGEIIS-KKYPFLTRKWDADEDVDR---------KHWGKFSSFYD-----YSKTFNS 105
T F+G +I+ ++P + W A+E +D HW +F F + F
Sbjct: 138 TLFEGYVINYNQFPLCSLHWPAEETLDPYMAQRESDCSHWKRFGHFGSDNWSLTERNFGQ 197
Query: 106 DSFDYDSLKDTDFVFMRWKEHFLVPDHTIKDI--------NGASFAGFYYICFQKSAATI 157
+ + + +++++WKE FL+ D +++ GASF GFYY+C + ++
Sbjct: 198 YNHESAEFMNQRYIYLKWKERFLLDDEEQENLMLDDNHHLEGASFEGFYYVCLDQLTGSV 257
Query: 158 EGYYFHRSSEWFQSLTLCHVPDHSLQIY 185
EGYY+H + E FQ L L +L Y
Sbjct: 258 EGYYYHPACELFQKLELVPTNCDALNTY 285
>sp|P38263|GID4_YEAST Vacuolar import and degradation protein 24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VID24 PE=1
SV=1
Length = 362
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 61/219 (27%)
Query: 17 RFQGHQKSKGNSYEIEV----VHVDEEN-----SYLCGYLKIKGLTEEYPTLTTFFDGEI 67
+F G+Q S Y++ V V + +++ +L G+L I+GLT ++P ++T+F+
Sbjct: 128 QFTGYQISGYKRYQVTVNLKTVDLPKKDCTSLSPHLSGFLSIRGLTNQHPEISTYFEAYA 187
Query: 68 IS-KKYPFLTRKWD---------ADEDVDRKHWGKFSSFY-------------------- 97
++ K+ FL+ W A + D +HW F SF
Sbjct: 188 VNHKELGFLSSSWKDEPVLNEFKATDQTDLEHWINFPSFRQLFLMSQKNGLNSTDDNGTT 247
Query: 98 --------------------DYSKTFNSDSFDYDSLKDTDFVFMRWKEHFLVPDHTIKD- 136
+ S+ F+ + +D+ + F+FM+WKE FLVPD + +
Sbjct: 248 NAAKKLPPQQLPTTPSADAGNISRIFSQEK-QFDNYLNERFIFMKWKEKFLVPDALLMEG 306
Query: 137 INGASFAGFYYICFQKSAATIEGYYFHRSSEWFQSLTLC 175
++GAS+ GFYYI + I+G+Y+H+ +E FQ L L
Sbjct: 307 VDGASYDGFYYIVHDQVTGNIQGFYYHQDAEKFQQLELV 345
>sp|Q9UT04|YLWD_SCHPO Uncharacterized protein P8A3.13c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.13c PE=4 SV=1
Length = 547
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 8/139 (5%)
Query: 30 EIEVVHVDEENSYLCGYLKIKGLT-EEYPTLTTFFDGEII--SKKYPFLTRKWDADEDVD 86
++ + VD + L G L + + + T++T + GEI+ S+K F T KW A ++D
Sbjct: 384 DVSIHVVDYKRRALEGQLNAQARSSDPSSTISTAWTGEILDFSEKLNFATEKWSAPLEID 443
Query: 87 RKHWGKFSSFYDY-SKTFNSDSFDYDSLKDT--DFVFMRWKEHFLVPDHTIKDINGASFA 143
+W K + F + + TF + L ++FMRWK+ ++ D T D + +
Sbjct: 444 VCYWRKLAPFQNMDTNTFLETITNPKKLYKICQKYIFMRWKDMLILKDQT--DTSESRIT 501
Query: 144 GFYYICFQKSAATIEGYYF 162
GFY+ C + I+GYY+
Sbjct: 502 GFYFCCLCRENGYIQGYYY 520
>sp|Q6GZV4|021L_FRG3G Uncharacterized protein 021L OS=Frog virus 3 (isolate Goorha)
GN=FV3-021L PE=4 SV=1
Length = 219
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 46 YLKIKGL--TEEYPTLTTFFDGEIISKKYPFLTRKWDADEDVDRKHWGKF 93
Y+ +K + TE P +TT+ + I+ +KY LTR+ D+ ++ W K+
Sbjct: 80 YMVLKRMYPTEVIPEMTTYSNVAIMREKYKLLTRRLSLDKHIN--EWKKY 127
>sp|O28771|Y1501_ARCFU Uncharacterized protein AF_1501 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_1501 PE=4 SV=1
Length = 247
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 51 GLTEEYPTLTTFFDGEIISKKYPFLTRKWDADEDVDRKHWGKFSSFYDYSKTFNSDSFDY 110
GLTEE +TT + E I KKY K ++E++D+ YD S D+
Sbjct: 120 GLTEEI--ITTPDEREAILKKYGI---KMPSEEEIDQIIMNALDGSYDVIAATTSAPGDF 174
Query: 111 DSLKDT 116
+SLK++
Sbjct: 175 ESLKNS 180
>sp|P38937|CUT8_SCHPO Tethering factor for nuclear proteasome cut8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cut8 PE=1 SV=1
Length = 262
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 105 SDSFDYDSLKDTDFVFMRWKEHFLVPDHTIKDINGASFAGFYYICFQKSAATIEGYYFHR 164
+DSF Y K D+ F R +E ++ H + D+ + Y CF+K+ ++
Sbjct: 89 NDSFPYGGDKRGDYAFNRIREKYMAVLHALNDM-VPCYLPPYSTCFEKNITFLDA----- 142
Query: 165 SSEWFQSLTLCHVPDHSL 182
++ L H P+H++
Sbjct: 143 ATNVVHELPEFHNPNHNV 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,906,653
Number of Sequences: 539616
Number of extensions: 3331812
Number of successful extensions: 6464
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6447
Number of HSP's gapped (non-prelim): 15
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)