Query psy3119
Match_columns 187
No_of_seqs 105 out of 156
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 16:55:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09783 Vac_ImportDeg: Vacuol 100.0 5.5E-87 1.2E-91 551.3 18.9 169 10-178 1-176 (176)
2 KOG4635|consensus 100.0 2.7E-66 5.8E-71 449.5 12.4 186 2-187 79-273 (274)
3 COG5073 VID24 Vacuolar import 100.0 3.3E-65 7.2E-70 437.7 13.5 180 6-187 73-271 (272)
4 KOG4635|consensus 98.8 3.7E-09 8.1E-14 93.0 3.4 125 13-166 10-140 (274)
5 TIGR03836 termin_org_HMW1 cyta 44.8 17 0.00037 26.9 1.9 16 145-164 44-59 (82)
6 PF11447 DUF3201: Protein of u 39.2 15 0.00031 30.3 0.9 35 116-150 34-73 (150)
7 PF09826 Beta_propel: Beta pro 37.6 3.1E+02 0.0066 26.5 9.7 128 12-154 322-473 (521)
8 PF07889 DUF1664: Protein of u 28.3 24 0.00053 28.1 0.6 10 117-126 19-28 (126)
9 PF11954 DUF3471: Domain of un 27.3 1.2E+02 0.0026 21.8 4.1 31 148-178 68-100 (100)
10 PF04489 DUF570: Protein of un 23.5 1.3E+02 0.0027 28.9 4.4 28 25-52 258-287 (429)
11 cd05706 S1_Rrp5_repeat_sc10 S1 22.9 1.7E+02 0.0037 19.5 4.0 21 35-56 20-40 (73)
12 PLN02352 phospholipase D epsil 22.5 35 0.00076 34.8 0.6 38 122-161 59-108 (758)
13 PF09737 Det1: De-etiolated pr 21.1 1.4E+02 0.0029 28.4 4.1 53 112-168 193-245 (407)
14 PF14230 DUF4333: Domain of un 20.4 1.2E+02 0.0026 21.8 2.9 27 11-37 51-79 (80)
No 1
>PF09783 Vac_ImportDeg: Vacuolar import and degradation protein; InterPro: IPR018618 Members of this family are involved in the negative regulation of gluconeogenesis. They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole [, ].
Probab=100.00 E-value=5.5e-87 Score=551.33 Aligned_cols=169 Identities=55% Similarity=1.008 Sum_probs=163.6
Q ss_pred CCCCCCCeeeEEEccCCceeeEEEE--EEeCCCCeeEEEEEEccCCCCCCceeeeeeEEEec-CCCCccccCcCCCchhh
Q psy3119 10 TLLYNGSRFQGHQKSKGNSYEIEVV--HVDEENSYLCGYLKIKGLTEEYPTLTTFFDGEIIS-KKYPFLTRKWDADEDVD 86 (187)
Q Consensus 10 ~~L~pg~~F~G~Q~S~~~~y~V~V~--~VDl~~~~l~G~l~I~gLt~~~p~itTfFeGEII~-~k~~F~T~~W~A~~~~D 86 (187)
+||+|||+|+|+|+|++++|+|+|+ +|||++++|||+|+|+|||+++|+||||||||||| ++|+|+|++|+|++++|
T Consensus 1 ~~L~pg~~F~G~Q~S~~~~y~V~V~i~~VDl~~~~l~G~l~i~glt~~~p~itTfFeGEII~~~~~~F~T~~W~a~~~~D 80 (176)
T PF09783_consen 1 SYLRPGSRFVGTQQSGREKYPVKVTIKTVDLPNSHLCGYLEIKGLTDDHPEITTFFEGEIIGFNKHSFLTEKWGANEEID 80 (176)
T ss_pred CcccCCCEEEeEecCCCcceEEEEEEEEecCCcCEEEEEEEEecCCCCCCcEEEEEeeEEecCCCCceeccccCCCcchh
Confidence 6999999999999999999999999 99999999999999999999999999999999999 89999999999999999
Q ss_pred HhhhcCcCCCccccccccC----CCCCcccccCCCeeEeeecceeeccCCCccCcCCceeeeeEEEEEEccCCceEEEEe
Q psy3119 87 RKHWGKFSSFYDYSKTFNS----DSFDYDSLKDTDFVFMRWKEHFLVPDHTIKDINGASFAGFYYICFQKSAATIEGYYF 162 (187)
Q Consensus 87 ~~hW~kf~~F~~~~~~~~~----~~~~~~~~~~~~~IfMRWKE~Flvpd~~v~~i~GaSf~GFYYIc~~~~~G~I~G~Yy 162 (187)
++||+|||||+++.+.... +.....++++++||||||||+|||||++|++|+||||||||||||||++|+|+||||
T Consensus 81 ~~hW~kf~~f~~~~~~~~~~~~~~~~~~~~~~~~~~IfMRWKE~Flvpd~~~~~i~GaSf~GFYYI~~~~~~G~I~G~Yy 160 (176)
T PF09783_consen 81 LEHWSKFPPFRPLSKDENLQKLSDDFDYEDLLNQRYIFMRWKERFLVPDHRVKSISGASFEGFYYICLDRSTGSIEGYYY 160 (176)
T ss_pred hHHHhcCCcchhhhhhhccccccCCccchhhcCCCcEEEEEEeEEEcccccCCCcCceeEeeEEEEEEEccCCeEEEEEE
Confidence 9999999999999876655 667788899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeeeEEec
Q psy3119 163 HRSSEWFQSLTLCHVP 178 (187)
Q Consensus 163 h~~se~fQ~L~L~~v~ 178 (187)
|++|||||+|+|+||+
T Consensus 161 h~~se~fQ~L~L~p~~ 176 (176)
T PF09783_consen 161 HPNSEKFQQLELKPVE 176 (176)
T ss_pred CCCCCccceeEeEecC
Confidence 9999999999999985
No 2
>KOG4635|consensus
Probab=100.00 E-value=2.7e-66 Score=449.46 Aligned_cols=186 Identities=50% Similarity=0.899 Sum_probs=177.9
Q ss_pred CCCCCCCCCCCCCCCeeeEEEccCCceeeEEEE--EEeCCCCeeEEEEEEccCCCCCCceeeeeeEEEec-CCCCcccc-
Q psy3119 2 SKQPGVTGTLLYNGSRFQGHQKSKGNSYEIEVV--HVDEENSYLCGYLKIKGLTEEYPTLTTFFDGEIIS-KKYPFLTR- 77 (187)
Q Consensus 2 ~~~p~~~~~~L~pg~~F~G~Q~S~~~~y~V~V~--~VDl~~~~l~G~l~I~gLt~~~p~itTfFeGEII~-~k~~F~T~- 77 (187)
+..+...+++|||||+|+|.|.|++++|.|+|. +||+..++|||+|+|+|||+.+++||||||||||+ ++++|+|+
T Consensus 79 t~~~~~~~~~LR~gskF~G~Q~s~~~~y~V~V~id~Vd~~~~~lcG~~~i~~lT~~~~~ltT~FegeII~~k~~~f~te~ 158 (274)
T KOG4635|consen 79 TSSYGTRTDFLRSGSKFRGFQKSKKESYFVEVNIDVVDLPKSYLCGTLSIKGLTDFYPTLTTYFEGEIISSKKLPFLTEV 158 (274)
T ss_pred ccccccchhhhcCcccccccccCCCceEEEEEEEEEeecccceeEEEEEecccCCCCCccceeeeeEEeccccccceecc
Confidence 345578899999999999999999999999999 99999999999999999999999999999999999 99999999
Q ss_pred -CcCCCchhhHhhhcCcCCCccccccccCCCCCccccc---CCCeeEeeecceeeccC-CCccCcCCceeeeeEEEEEEc
Q psy3119 78 -KWDADEDVDRKHWGKFSSFYDYSKTFNSDSFDYDSLK---DTDFVFMRWKEHFLVPD-HTIKDINGASFAGFYYICFQK 152 (187)
Q Consensus 78 -~W~A~~~~D~~hW~kf~~F~~~~~~~~~~~~~~~~~~---~~~~IfMRWKE~Flvpd-~~v~~i~GaSf~GFYYIc~~~ 152 (187)
+|+|++++|+.||+||++|+++.++.+.+.+...|.+ +++||||||||+||||| |..+++.||||+||||||++|
T Consensus 159 ~e~~as~e~D~~hWkkf~~F~~~~~s~~~~~~~~~d~~~~~~~~~I~MKwKe~fll~d~~~~~~~~gas~eGFYy~c~~q 238 (274)
T KOG4635|consen 159 FEWDASDEIDLLHWKKFPAFRNVAKSENLNGFGSYDTEYSENQNYIFMKWKELFLLPDSHLQKDISGASIEGFYYICFDQ 238 (274)
T ss_pred cccCCccccchHHHhhchhhhhhhhccccccCCCccchhhcccccEEEEehhhccCCcccccccCCCcccccEEEEEEec
Confidence 9999999999999999999999988888877776766 89999999999999999 889999999999999999999
Q ss_pred cCCceEEEEecCCCCCCceeeeEEecCCCCCceeC
Q psy3119 153 SAATIEGYYFHRSSEWFQSLTLCHVPDHSLQIYEF 187 (187)
Q Consensus 153 ~~G~I~G~Yyh~~se~fQ~L~L~~v~~~~~~~~eF 187 (187)
++|.|+|+|||+++|++|+|+|.|+..+..++++|
T Consensus 239 ~~g~ieG~YYh~~~e~sq~l~Lvp~~~r~~~s~~f 273 (274)
T KOG4635|consen 239 STGSIEGYYYHPDAEKSQQLELVPSSPRKSPSYSF 273 (274)
T ss_pred cccccceeEeccchhhhhhhhccccCccccccccc
Confidence 99999999999999999999999999999999987
No 3
>COG5073 VID24 Vacuolar import and degradation protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.3e-65 Score=437.68 Aligned_cols=180 Identities=40% Similarity=0.725 Sum_probs=162.1
Q ss_pred CCCCCCCCCCCeeeEEEccCCceeeEEEE--EEeCCC------CeeEEEEEEccCCCCCCceeeeeeEEEec-CCCCccc
Q psy3119 6 GVTGTLLYNGSRFQGHQKSKGNSYEIEVV--HVDEEN------SYLCGYLKIKGLTEEYPTLTTFFDGEIIS-KKYPFLT 76 (187)
Q Consensus 6 ~~~~~~L~pg~~F~G~Q~S~~~~y~V~V~--~VDl~~------~~l~G~l~I~gLt~~~p~itTfFeGEII~-~k~~F~T 76 (187)
.-.+++||||++|.|.|.||...|+|+|+ +|||+. ++|||+|+|+|||+.+++||||||||||| ++++|.|
T Consensus 73 ~~~~~~Lr~G~qF~G~Qis~~~~~~v~v~i~~Vdl~~kd~~sl~~l~G~l~i~~lT~~~~~ltTyFEgeiI~~n~~~F~T 152 (272)
T COG5073 73 TRRSGFLRNGAQFGGVQISGYPPLTVEVNIDTVDLPKKDDYSLPHLCGTLNIQNLTDPSSTLTTYFEGEIIGFNKLPFAT 152 (272)
T ss_pred cchhhhccCccccccEeccCCcceEEEEEEEEEeccccccccccceeeEEEEeccCCCcchheeeeeeeecccccccccc
Confidence 34689999999999999999999999999 999999 99999999999999999999999999999 8999999
Q ss_pred cCcC---CCchhhHhhhcCcCCCcccc-----ccccCCCCCcccccCCCeeEeeecceeeccCC-CccCcCCceeeeeEE
Q psy3119 77 RKWD---ADEDVDRKHWGKFSSFYDYS-----KTFNSDSFDYDSLKDTDFVFMRWKEHFLVPDH-TIKDINGASFAGFYY 147 (187)
Q Consensus 77 ~~W~---A~~~~D~~hW~kf~~F~~~~-----~~~~~~~~~~~~~~~~~~IfMRWKE~Flvpd~-~v~~i~GaSf~GFYY 147 (187)
++|. |++++|++||+|||+|+.-. ..+.... ....++++||||||||+|||||. ..++|+||||+||||
T Consensus 153 ~~W~~~~a~~eiD~~HWkrf~~fr~dn~t~ie~i~~q~~--~~~~~~qryIymkWKE~flL~D~l~~d~~~GaS~dGFYY 230 (272)
T COG5073 153 EKWSMAPASEEIDVCHWKRFPPFRMDNGTFIERIFNQKS--KDYKINQRYIYMKWKELFLLPDPLQLDTISGASIDGFYY 230 (272)
T ss_pred ccccccCcccchhhHHHHhcccccccCCcccceeecCcc--chhhhhheeeeeeehhhhccCchHhhcCCCCceeccEEE
Confidence 9777 68899999999999999211 2222232 22345789999999999999998 778899999999999
Q ss_pred EEEEccCCceEEEEecC-CCCCCceeeeEEecCCCCCceeC
Q psy3119 148 ICFQKSAATIEGYYFHR-SSEWFQSLTLCHVPDHSLQIYEF 187 (187)
Q Consensus 148 Ic~~~~~G~I~G~Yyh~-~se~fQ~L~L~~v~~~~~~~~eF 187 (187)
||+||+||.|+|||||| +.|++|+|||.|+..+.+++|.|
T Consensus 231 ~c~~q~tG~iqGyYYh~~~~e~~Q~LeL~P~~~~~~~s~s~ 271 (272)
T COG5073 231 CCLDQETGYIQGYYYHPKHAEKSQQLELVPEQPRKSPSYSF 271 (272)
T ss_pred EEEeccCCeeeeEEecccchhhhceeecccccccccccccC
Confidence 99999999999999999 77999999999999999999876
No 4
>KOG4635|consensus
Probab=98.78 E-value=3.7e-09 Score=92.96 Aligned_cols=125 Identities=21% Similarity=0.228 Sum_probs=103.8
Q ss_pred CCCCeeeEEEcc---CCceeeEEEE--EEeCCCCeeEEEEEEccCCCCCCceeeeeeEEEec-CCCCccccCcCCCchhh
Q psy3119 13 YNGSRFQGHQKS---KGNSYEIEVV--HVDEENSYLCGYLKIKGLTEEYPTLTTFFDGEIIS-KKYPFLTRKWDADEDVD 86 (187)
Q Consensus 13 ~pg~~F~G~Q~S---~~~~y~V~V~--~VDl~~~~l~G~l~I~gLt~~~p~itTfFeGEII~-~k~~F~T~~W~A~~~~D 86 (187)
-|.+.|+|+|.+ ...+|.+.|. ..++..+..||.+++-+.+...+.+.||.||+|.+ .+..+.|++| +....+
T Consensus 10 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kn~~~~t~~~-~~~~~~ 88 (274)
T KOG4635|consen 10 TPTSAFSGTQVFNLQKAERWLNNVQIQGSALEHSYSSGTTEAPNVPMCDTPVITFEEGKIVDGKNPTIYTSSY-GTRTDF 88 (274)
T ss_pred CCCcccccccccccCHHHhccccccccccccccccCCCcccCCCCCCCCCCeeEeeccccccccCcceecccc-ccchhh
Confidence 466778888854 3577999888 99999999999999999999999999999999985 6899999999 778999
Q ss_pred HhhhcCcCCCccccccccCCCCCcccccCCCeeEeeecceeeccCCCccCcCCceeeeeEEEEEEccCCceEEEEecCCC
Q psy3119 87 RKHWGKFSSFYDYSKTFNSDSFDYDSLKDTDFVFMRWKEHFLVPDHTIKDINGASFAGFYYICFQKSAATIEGYYFHRSS 166 (187)
Q Consensus 87 ~~hW~kf~~F~~~~~~~~~~~~~~~~~~~~~~IfMRWKE~Flvpd~~v~~i~GaSf~GFYYIc~~~~~G~I~G~Yyh~~s 166 (187)
|++|+||++|.. +|||++.|. |.-..+....+ |||...+-+.+++.|+...+
T Consensus 89 LR~gskF~G~Q~-----------------------s~~~~y~V~---V~id~Vd~~~~--~lcG~~~i~~lT~~~~~ltT 140 (274)
T KOG4635|consen 89 LRSGSKFRGFQK-----------------------SKKESYFVE---VNIDVVDLPKS--YLCGTLSIKGLTDFYPTLTT 140 (274)
T ss_pred hcCccccccccc-----------------------CCCceEEEE---EEEEEeecccc--eeEEEEEecccCCCCCccce
Confidence 999999999842 899999984 32223333444 99999988888888877654
No 5
>TIGR03836 termin_org_HMW1 cytadherence high molecular weight protein 1 N-terminal region. This model describes the N-terminal region of the Mycoplasma cytadherence protein HMW1, up to but not including the first EAGR box domain. The apparent orthologs in different Mycoplasma species differ profoundly in archictecture C-terminally to the region described here.
Probab=44.84 E-value=17 Score=26.90 Aligned_cols=16 Identities=31% Similarity=0.721 Sum_probs=13.4
Q ss_pred eEEEEEEccCCceEEEEecC
Q psy3119 145 FYYICFQKSAATIEGYYFHR 164 (187)
Q Consensus 145 FYYIc~~~~~G~I~G~Yyh~ 164 (187)
=|||++|..|| .||+|
T Consensus 44 gYYIafn~Etg----vyydP 59 (82)
T TIGR03836 44 GYYIAFNPETG----VYYDP 59 (82)
T ss_pred EEEEEecCCCc----eEecC
Confidence 39999999985 78877
No 6
>PF11447 DUF3201: Protein of unknown function (DUF3201); InterPro: IPR024505 This archaeal family of proteins has no known function.; PDB: 1YB3_A.
Probab=39.18 E-value=15 Score=30.27 Aligned_cols=35 Identities=29% Similarity=0.747 Sum_probs=22.0
Q ss_pred CCeeEe--eecce-eeccCCCccC--cCCceeeeeEEEEE
Q psy3119 116 TDFVFM--RWKEH-FLVPDHTIKD--INGASFAGFYYICF 150 (187)
Q Consensus 116 ~~~IfM--RWKE~-Flvpd~~v~~--i~GaSf~GFYYIc~ 150 (187)
+.|||+ +|.|. +--|.-.++. --||+++|||++.-
T Consensus 34 nayi~lDgeW~em~YPhPaf~ikp~gEvGat~q~~YFvfa 73 (150)
T PF11447_consen 34 NAYIYLDGEWREMKYPHPAFEIKPQGEVGATPQGFYFVFA 73 (150)
T ss_dssp S-EEEETTEEEE--S-EEEEEEETTEEEEEETTEEEEEEE
T ss_pred heeEEecCeeeeecCCCCceeeccCcccccccceEEEEEE
Confidence 467887 78887 4445444432 23999999999853
No 7
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=37.58 E-value=3.1e+02 Score=26.52 Aligned_cols=128 Identities=19% Similarity=0.226 Sum_probs=75.2
Q ss_pred CCCCCeeeEEEccCCceeeEEEE------EEeCCC---CeeEEEEEEccCCCCCCceeeeeeEEEecCCCCccccCcCCC
Q psy3119 12 LYNGSRFQGHQKSKGNSYEIEVV------HVDEEN---SYLCGYLKIKGLTEEYPTLTTFFDGEIISKKYPFLTRKWDAD 82 (187)
Q Consensus 12 L~pg~~F~G~Q~S~~~~y~V~V~------~VDl~~---~~l~G~l~I~gLt~~~p~itTfFeGEII~~k~~F~T~~W~A~ 82 (187)
|.||-+--+.=.-|...|=|..+ .|||.+ +.+-|.|+|-|-.+=...+ =|+-+||- |.+
T Consensus 322 la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~---~e~~LlGi---------G~~ 389 (521)
T PF09826_consen 322 LAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPY---DENHLLGI---------GKD 389 (521)
T ss_pred cCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeEC---CCCeEEEE---------ccc
Confidence 55777666666678899999887 788875 8999999999998753333 45556651 111
Q ss_pred chhhHhhhcCcCCC-------------ccccccccCCCCCcccccCCCeeEeeecce--eeccCCCccCcCCceeeeeEE
Q psy3119 83 EDVDRKHWGKFSSF-------------YDYSKTFNSDSFDYDSLKDTDFVFMRWKEH--FLVPDHTIKDINGASFAGFYY 147 (187)
Q Consensus 83 ~~~D~~hW~kf~~F-------------~~~~~~~~~~~~~~~~~~~~~~IfMRWKE~--Flvpd~~v~~i~GaSf~GFYY 147 (187)
...+ .=+...... +.+.+..--+....++++.+..=||-|||+ +.+|-. ..-....+.|+|=
T Consensus 390 ~~~~-~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~--~~~~~~~~~g~~v 466 (521)
T PF09826_consen 390 TDED-EGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVS--SSYGYFNFQGAYV 466 (521)
T ss_pred Cccc-ccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEE--EccCccccceEEE
Confidence 1111 000000010 011111111223445666677788999888 667754 2345667788887
Q ss_pred EEEEccC
Q psy3119 148 ICFQKSA 154 (187)
Q Consensus 148 Ic~~~~~ 154 (187)
.-++..+
T Consensus 467 ~~i~~~~ 473 (521)
T PF09826_consen 467 FSIDPED 473 (521)
T ss_pred EEEeCCC
Confidence 7777433
No 8
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.32 E-value=24 Score=28.11 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=8.1
Q ss_pred CeeEeeecce
Q psy3119 117 DFVFMRWKEH 126 (187)
Q Consensus 117 ~~IfMRWKE~ 126 (187)
.|.|||||=-
T Consensus 19 GY~Y~wwKGw 28 (126)
T PF07889_consen 19 GYGYMWWKGW 28 (126)
T ss_pred HheeeeecCC
Confidence 6899999943
No 9
>PF11954 DUF3471: Domain of unknown function (DUF3471); InterPro: IPR021860 This entry represents the C-terminal domain of a family of peptidases which belong to MEROPS peptidase family S12, clan SE. The structure of the Pyrococcus abyssi Pab87 peptidase has been determined at 2.2 A resolution []. Pab87 is a self-compartmentalizing proteases that orchestrates protein turnover through an original architecture characterised by a central catalytic chamber.
Probab=27.32 E-value=1.2e+02 Score=21.79 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=26.5
Q ss_pred EEEEcc-CCceEEEEecCCCCC-CceeeeEEec
Q psy3119 148 ICFQKS-AATIEGYYFHRSSEW-FQSLTLCHVP 178 (187)
Q Consensus 148 Ic~~~~-~G~I~G~Yyh~~se~-fQ~L~L~~v~ 178 (187)
|.|.+. +|.|.++-.+.+..+ +|.|.++.|.
T Consensus 68 i~F~~d~~G~v~~l~l~~~~~~~~~~~~~~rv~ 100 (100)
T PF11954_consen 68 ITFERDADGKVTGLTLHQNGMPDGEDIVFKRVD 100 (100)
T ss_pred EEEEECCCCCEEEEEEEeccccCcceeeEEECC
Confidence 889988 899999999998656 8999888763
No 10
>PF04489 DUF570: Protein of unknown function (DUF570) ; InterPro: IPR007578 This proteins in this entry belong to the herpesvirus U10 family; there function is unknown.
Probab=23.52 E-value=1.3e+02 Score=28.88 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=22.4
Q ss_pred CCceeeEEEE--EEeCCCCeeEEEEEEccC
Q psy3119 25 KGNSYEIEVV--HVDEENSYLCGYLKIKGL 52 (187)
Q Consensus 25 ~~~~y~V~V~--~VDl~~~~l~G~l~I~gL 52 (187)
+.-.+.|.|+ .||..+..|-|+|.-..-
T Consensus 258 ~~~~ftiNvd~l~v~~~~~~liGtlst~~c 287 (429)
T PF04489_consen 258 MGLEFTINVDNLCVDKHNRKLIGTLSTSSC 287 (429)
T ss_pred cceEEEEEeeeEEEecCCCEEEEEEecccc
Confidence 3456788888 999999999999986543
No 11
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=22.91 E-value=1.7e+02 Score=19.49 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=17.1
Q ss_pred EEeCCCCeeEEEEEEccCCCCC
Q psy3119 35 HVDEENSYLCGYLKIKGLTEEY 56 (187)
Q Consensus 35 ~VDl~~~~l~G~l~I~gLt~~~ 56 (187)
-|++.++ +.|++.+..|++++
T Consensus 20 ~v~l~~~-~~g~v~~s~l~~~~ 40 (73)
T cd05706 20 LVQLGNK-VTGPSFITDALDDY 40 (73)
T ss_pred EEEeCCC-cEEEEEhhhccCcc
Confidence 5677776 99999999998764
No 12
>PLN02352 phospholipase D epsilon
Probab=22.51 E-value=35 Score=34.76 Aligned_cols=38 Identities=24% Similarity=0.499 Sum_probs=29.7
Q ss_pred eecceeeccCC---------CccCcCCceeeeeEEEEEEcc-CC-c-eEEEE
Q psy3119 122 RWKEHFLVPDH---------TIKDINGASFAGFYYICFQKS-AA-T-IEGYY 161 (187)
Q Consensus 122 RWKE~Flvpd~---------~v~~i~GaSf~GFYYIc~~~~-~G-~-I~G~Y 161 (187)
+|.|.|.||.. +||+ ||+.-|=.||-..+. +| . |+|.+
T Consensus 59 ~w~e~f~i~~ah~~~~~~~f~vk~--~~~~ig~~~~p~~~~~~g~~~~~~~~ 108 (758)
T PLN02352 59 VWNQTFQILCAHPLDSTITITLKT--KCSILGRFHIQAHQIVTEASFINGFF 108 (758)
T ss_pred ccccceeEEeeeecCCcEEEEEec--CCeEEEEEEEEHHHhhCCCcccceEE
Confidence 49999999874 2555 899999999966554 66 5 88876
No 13
>PF09737 Det1: De-etiolated protein 1 Det1; InterPro: IPR019138 This entry represents Det1 family proteins []. Det1 (de-etiolated-1) is an essential negative regulator of plant light responses, and it is a component of the Arabidopsis CDD complex containing DDB1 and COP10 ubiquitin E2 variant. Mammalian Det1 forms stable DDD-E2 complexes, consisting of DDB1, DDA1 (DET1, DDB1 Associated 1), is a member of the UBE2E group of canonical ubiquitin conjugating enzymes and modulates Cul4A function [].
Probab=21.15 E-value=1.4e+02 Score=28.44 Aligned_cols=53 Identities=15% Similarity=0.332 Sum_probs=35.5
Q ss_pred cccCCCeeEeeecceeeccCCCccCcCCceeeeeEEEEEEccCCceEEEEecCCCCC
Q psy3119 112 SLKDTDFVFMRWKEHFLVPDHTIKDINGASFAGFYYICFQKSAATIEGYYFHRSSEW 168 (187)
Q Consensus 112 ~~~~~~~IfMRWKE~Flvpd~~v~~i~GaSf~GFYYIc~~~~~G~I~G~Yyh~~se~ 168 (187)
+|+|.+++++||+-.=.++- ++. +-.-..=.||++|..+++|-|.|=..+-|-
T Consensus 193 QlLD~~hLLIky~s~D~~~~-r~~---d~~~~~sffvvYn~~t~eV~~vyen~S~eL 245 (407)
T PF09737_consen 193 QLLDEDHLLIKYGSEDVVTL-RVS---DPNSQPSFFVVYNMETTEVLGVYENSSEEL 245 (407)
T ss_pred hhcchhheeeeeccccceee-ccC---CCCCCceEEEEEeeccceEEEEEcCChHHH
Confidence 56788899999865544432 221 122255679999999999999986554443
No 14
>PF14230 DUF4333: Domain of unknown function (DUF4333)
Probab=20.38 E-value=1.2e+02 Score=21.79 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=22.7
Q ss_pred CCCCCCeeeEEEccCCceeeEEEE--EEe
Q psy3119 11 LLYNGSRFQGHQKSKGNSYEIEVV--HVD 37 (187)
Q Consensus 11 ~L~pg~~F~G~Q~S~~~~y~V~V~--~VD 37 (187)
-.++|++|...=..+.+.+.|.|+ ++|
T Consensus 51 ~~~~G~tf~C~vt~~G~~~~v~Vtvt~~d 79 (80)
T PF14230_consen 51 EVEVGATFTCTVTVDGETQTVTVTVTDVD 79 (80)
T ss_pred cccCCceEEEEEEeCCEEEEEEEEEECCC
Confidence 358999999997788999999998 554
Done!