Query psy3119
Match_columns 187
No_of_seqs 105 out of 156
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 16:55:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sd4_A PHD finger protein 20; 37.7 88 0.003 20.7 6.8 49 4-55 5-53 (69)
2 4eib_A Glucoamylase; beta barr 35.9 32 0.0011 25.8 3.5 25 30-54 28-52 (109)
3 3hpe_A Conserved hypothetical 20.6 50 0.0017 25.4 2.2 18 40-57 90-107 (164)
4 2djm_A Glucoamylase A; beta sa 16.3 1.2E+02 0.0041 22.2 3.3 27 30-56 8-34 (106)
5 2lfu_A GNA2132; beta-barrel, a 15.9 4E+02 0.014 21.3 6.6 52 16-70 75-133 (193)
6 2wgo_A Ranaspumin-2, RSN-2; cy 13.4 96 0.0033 22.2 2.0 18 143-160 55-72 (98)
7 2k4k_A GSP13, general stress p 12.7 3E+02 0.01 20.1 4.7 36 11-55 4-43 (130)
8 1fx3_A SECB, protein-export pr 12.6 2E+02 0.0069 22.7 3.9 32 24-55 58-101 (169)
9 3ol0_A De novo designed monome 12.3 2.7E+02 0.0094 17.7 3.8 30 146-178 17-46 (48)
10 1yb3_A Hypothetical protein; s 10.9 87 0.003 25.3 1.2 35 115-149 48-87 (175)
No 1
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=37.74 E-value=88 Score=20.74 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=34.8
Q ss_pred CCCCCCCCCCCCCeeeEEEccCCceeeEEEEEEeCCCCeeEEEEEEccCCCC
Q psy3119 4 QPGVTGTLLYNGSRFQGHQKSKGNSYEIEVVHVDEENSYLCGYLKIKGLTEE 55 (187)
Q Consensus 4 ~p~~~~~~L~pg~~F~G~Q~S~~~~y~V~V~~VDl~~~~l~G~l~I~gLt~~ 55 (187)
||.....-++.|++..-.-..+.. |.-+|..||.....+ .++..|....
T Consensus 5 p~~~~~~~F~vGmkLEa~d~~~p~-~~AtV~~v~~~~~~~--~VhfdGw~~~ 53 (69)
T 3sd4_A 5 PPNRRGISFEVGAQLEARDRLKNW-YPAHIEDIDYEEGKV--LIHFKRWNHR 53 (69)
T ss_dssp CCCCTTCCCSTTCEEEEECTTSCE-EEEEEEEEETTTTEE--EEEETTSCGG
T ss_pred CCCCCCCCcCCCCEEEEEECCCCc-cccEEEEEeccCCEE--EEEeCCCCCC
Confidence 455567778999999776555544 888888998877776 5666666543
No 2
>4eib_A Glucoamylase; beta barrel, starch binding, amylose, hydrolase; 1.86A {Rhizopus oryzae}
Probab=35.94 E-value=32 Score=25.84 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=22.7
Q ss_pred eEEEEEEeCCCCeeEEEEEEccCCC
Q psy3119 30 EIEVVHVDEENSYLCGYLKIKGLTE 54 (187)
Q Consensus 30 ~V~V~~VDl~~~~l~G~l~I~gLt~ 54 (187)
+|.++.+.+.+..|+|+++++||.-
T Consensus 28 ~V~Les~~~~~~~LsGtI~V~NlAy 52 (109)
T 4eib_A 28 SVQLDSYNYDGSTFSGKIYVKNIAY 52 (109)
T ss_dssp SEEEEEEEECSSEEEEEEEEECCSS
T ss_pred eEEEEEEEEeCCEEEEEEEEEeccc
Confidence 6888899999999999999999983
No 3
>3hpe_A Conserved hypothetical secreted protein; HP1286, erucamide, fatty-acid binding; HET: ERU; 2.10A {Helicobacter pylori} SCOP: b.61.6.0
Probab=20.64 E-value=50 Score=25.40 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.1
Q ss_pred CCeeEEEEEEccCCCCCC
Q psy3119 40 NSYLCGYLKIKGLTEEYP 57 (187)
Q Consensus 40 ~~~l~G~l~I~gLt~~~p 57 (187)
+..++|.|+|+|.|..-.
T Consensus 90 ~~~v~G~LTi~GvTkpv~ 107 (164)
T 3hpe_A 90 DGKIHGDLTLHGVTKPVV 107 (164)
T ss_dssp TTEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEEEccEeEEEE
Confidence 678999999999997543
No 4
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding, carbohydrate binding, sugar binding protein; NMR {Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Probab=16.33 E-value=1.2e+02 Score=22.18 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=22.4
Q ss_pred eEEEEEEeCCCCeeEEEEEEccCCCCC
Q psy3119 30 EIEVVHVDEENSYLCGYLKIKGLTEEY 56 (187)
Q Consensus 30 ~V~V~~VDl~~~~l~G~l~I~gLt~~~ 56 (187)
.|..++|-+.+..|.|++.++||.-+.
T Consensus 8 ~V~LE~~~~~~~~l~GtV~V~NlafeK 34 (106)
T 2djm_A 8 SVQLDSYNYDGSTFSGKIYVKNIAYSK 34 (106)
T ss_dssp SEEEEEEEESSSCEEEEEEECCSSSCE
T ss_pred cEEEEEEEECCCEEEEEEEEeecCcCc
Confidence 577787777899999999999997543
No 5
>2lfu_A GNA2132; beta-barrel, antigen, membrane protein; NMR {Neisseria meningitidis}
Probab=15.85 E-value=4e+02 Score=21.26 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=32.3
Q ss_pred CeeeEEEc----cCCceeeE--EEE-EEeCCCCeeEEEEEEccCCCCCCceeeeeeEEEecC
Q psy3119 16 SRFQGHQK----SKGNSYEI--EVV-HVDEENSYLCGYLKIKGLTEEYPTLTTFFDGEIISK 70 (187)
Q Consensus 16 ~~F~G~Q~----S~~~~y~V--~V~-~VDl~~~~l~G~l~I~gLt~~~p~itTfFeGEII~~ 70 (187)
+.|+|.=. .....|.. ..+ +||..+..|+|.|...+... .+.+ + ++|.|-|+
T Consensus 75 AtY~G~~~~~~~~~g~~~~~~G~~~f~VDF~~Ktl~G~l~~~~~~~-~~~~-~-i~a~I~GN 133 (193)
T 2lfu_A 75 AVYNGEVLHFHTENGRPYPTRGRFAAKVDFGSKSVDGIIDSGDDLH-MGTQ-K-FKAAIDGN 133 (193)
T ss_dssp EEEEEEEEECCCSSCSSCCEEEEEEEEEETTTTEEEEEEECSCTTT-TCCE-E-EEEEECSS
T ss_pred EEEEEEEEEEEccCCcEecccccEEEEEECCCCEEEEEEEeCCccc-cceE-E-EEEEEECC
Confidence 55666532 22344533 345 99999999999999554321 2333 3 38998875
No 6
>2wgo_A Ranaspumin-2, RSN-2; cystatin fold, surfactant protein; NMR {Engystomops pustulosus}
Probab=13.38 E-value=96 Score=22.20 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=14.2
Q ss_pred eeeEEEEEEccCCceEEE
Q psy3119 143 AGFYYICFQKSAATIEGY 160 (187)
Q Consensus 143 ~GFYYIc~~~~~G~I~G~ 160 (187)
.-|||++.|...|+---|
T Consensus 55 krfyyvsvdagdgekckf 72 (98)
T 2wgo_A 55 KRFYYVSVDAGDGEKCKF 72 (98)
T ss_dssp SSEEEEEEECSSSCEEEE
T ss_pred ceEEEEEEecCCCceeeE
Confidence 359999999998875544
No 7
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=12.70 E-value=3e+02 Score=20.08 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=24.7
Q ss_pred CCCCCCeeeEEEccCCceeeEEEE----EEeCCCCeeEEEEEEccCCCC
Q psy3119 11 LLYNGSRFQGHQKSKGNSYEIEVV----HVDEENSYLCGYLKIKGLTEE 55 (187)
Q Consensus 11 ~L~pg~~F~G~Q~S~~~~y~V~V~----~VDl~~~~l~G~l~I~gLt~~ 55 (187)
-++.|..+.|. -+.|+ -|++.++ +.|.+.|..+.+.
T Consensus 4 ~~~vG~iv~G~--------V~~i~~~G~FV~l~~~-~~Glihisel~~~ 43 (130)
T 2k4k_A 4 KFEVGSVYTGK--------VTGLQAYGAFVALDEE-TQGLVHISEVTHG 43 (130)
T ss_dssp CCCTTCEEEEE--------EEEEETTEEEEEEETT-EEEEEEGGGTSSS
T ss_pred cCCCCCEEEEE--------EEEEeCCeEEEEECCC-cEEEEEHHHCCcc
Confidence 35677777775 12233 5677555 8999999999864
No 8
>1fx3_A SECB, protein-export protein SECB; protein trasnport, translocation, transport protein; 2.50A {Haemophilus influenzae} SCOP: d.33.1.1 PDB: 1ozb_A
Probab=12.55 E-value=2e+02 Score=22.67 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=21.6
Q ss_pred cCCceeeEEEE-EEeC--CC---------CeeEEEEEEccCCCC
Q psy3119 24 SKGNSYEIEVV-HVDE--EN---------SYLCGYLKIKGLTEE 55 (187)
Q Consensus 24 S~~~~y~V~V~-~VDl--~~---------~~l~G~l~I~gLt~~ 55 (187)
.+.+.|.|.++ +|.- .+ -..+|.++|.|++++
T Consensus 58 l~e~~~EV~L~l~v~ak~~~~~~~~F~vEv~~aGiF~i~~i~~e 101 (169)
T 1fx3_A 58 VGDDLYEVVLNISVETTLEDSGDVAFICEVKQAGVFTISGLEDV 101 (169)
T ss_dssp EETTEEEEEEEEEECCCCTTTCCCSCEEEEEEEEEEEEESCCHH
T ss_pred cCCCceEEEEEEEEEEccCCcccceEEEEEEEEEEEEecCCCHH
Confidence 35677888888 5543 22 246888888887754
No 9
>3ol0_A De novo designed monomer trefoil-fold SUB-domain forms HOMO-trimer assembly; beta-trefoil, synthetic protein, function-COMP only; 1.48A {Synthetic construct}
Probab=12.25 E-value=2.7e+02 Score=17.72 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=21.5
Q ss_pred EEEEEEccCCceEEEEecCCCCCCceeeeEEec
Q psy3119 146 YYICFQKSAATIEGYYFHRSSEWFQSLTLCHVP 178 (187)
Q Consensus 146 YYIc~~~~~G~I~G~Yyh~~se~fQ~L~L~~v~ 178 (187)
||+-+ ..+|.|.|- +...++|-.|||.||.
T Consensus 17 f~LqI-~PdG~V~GT--r~~~s~~SlLEi~~V~ 46 (48)
T 3ol0_A 17 QYLRI-NPDGTVDGT--RDRSDPHIQFQISPEG 46 (48)
T ss_dssp CEEEE-CTTSBEEEE--SCTTCGGGCEEEEECC
T ss_pred EEeEE-CCCCCCccc--cCCCCCcceEEEEEec
Confidence 34444 358899985 3445789999999986
No 10
>1yb3_A Hypothetical protein; structural genomics, protein structure initiative, PSI; 1.60A {Pyrococcus furiosus} SCOP: d.296.1.2
Probab=10.91 E-value=87 Score=25.33 Aligned_cols=35 Identities=26% Similarity=0.724 Sum_probs=24.2
Q ss_pred CCCeeEe--eecce-eeccCCCccCcC--CceeeeeEEEE
Q psy3119 115 DTDFVFM--RWKEH-FLVPDHTIKDIN--GASFAGFYYIC 149 (187)
Q Consensus 115 ~~~~IfM--RWKE~-Flvpd~~v~~i~--GaSf~GFYYIc 149 (187)
++-||+. .|.|. +-.|-=+++.++ ||+++|||++.
T Consensus 48 f~aY~~~dGeW~~m~YPhPafti~p~gevgat~~~~yfv~ 87 (175)
T 1yb3_A 48 FNAYLYIDGKWEEMKYPHPAFAVKPGGEVGATPQGFYFVF 87 (175)
T ss_dssp CSCEEEETTEEEECCSCEEEEEEETTEEEEEETTEEEEEE
T ss_pred cceEEEEcCEEeEccCCcceEEecccceeeeccceEEEEE
Confidence 5678887 78876 555544444322 89999999875
Done!