Query psy3119
Match_columns 187
No_of_seqs 105 out of 156
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 16:55:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3119.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3119hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yb3a1 d.296.1.2 (A:2-167) Hy 26.5 9 0.00066 28.8 0.8 35 116-150 40-79 (166)
2 d1z05a3 c.55.1.10 (A:81-208) T 18.9 28 0.002 22.7 2.1 25 144-168 3-27 (128)
3 d2coca1 b.55.1.1 (A:8-106) FYV 17.6 24 0.0017 21.7 1.4 11 41-51 1-11 (99)
4 d1t9ha1 b.40.4.5 (A:1-67) Prob 15.7 36 0.0027 21.2 2.0 13 140-152 8-20 (67)
5 d1tueb_ b.91.1.1 (B:) E2 regul 14.7 46 0.0033 25.4 2.7 76 72-149 90-167 (194)
6 d1rmka_ g.3.6.1 (A:) Conotoxin 13.8 13 0.00097 20.4 -0.6 14 125-149 7-20 (31)
7 d1ohpa1 d.17.4.3 (A:1-125) Del 13.7 1.1E+02 0.0078 18.9 4.1 44 115-165 74-119 (125)
8 d3bzka4 b.40.4.5 (A:637-730) T 12.9 1.4E+02 0.011 18.7 4.6 36 12-56 16-55 (94)
9 d1vh9a_ d.38.1.5 (A:) Hypothet 11.2 73 0.0053 21.6 2.7 45 26-70 77-122 (138)
10 d1sc0a_ d.38.1.5 (A:) Hypothet 10.9 81 0.0059 21.3 2.8 46 25-70 74-120 (137)
No 1
>d1yb3a1 d.296.1.2 (A:2-167) Hypothetical protein PF0168 {Pyrococcus furiosus [TaxId: 2261]}
Probab=26.50 E-value=9 Score=28.80 Aligned_cols=35 Identities=26% Similarity=0.737 Sum_probs=23.2
Q ss_pred CCeeEe--eecce-eeccCCCccC--cCCceeeeeEEEEE
Q psy3119 116 TDFVFM--RWKEH-FLVPDHTIKD--INGASFAGFYYICF 150 (187)
Q Consensus 116 ~~~IfM--RWKE~-Flvpd~~v~~--i~GaSf~GFYYIc~ 150 (187)
.-|||+ +|+|. +--|.-.++. --||+.+|||++.-
T Consensus 40 ~aYl~~DgeW~~m~YPhPaf~ikp~gevGatp~~~yFv~a 79 (166)
T d1yb3a1 40 NAYLYIDGKWEEMKYPHPAFAVKPGGEVGATPQGFYFVFA 79 (166)
T ss_dssp SCEEEETTEEEECCSCEEEEEEETTEEEEEETTEEEEEEE
T ss_pred ceEEEEcCEEEeeeCCCCceeeccCcccccCcceeEEEEE
Confidence 456776 78876 4455444442 23999999999854
No 2
>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}
Probab=18.91 E-value=28 Score=22.70 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=20.2
Q ss_pred eeEEEEEEccCCceEEEEecCCCCC
Q psy3119 144 GFYYICFQKSAATIEGYYFHRSSEW 168 (187)
Q Consensus 144 GFYYIc~~~~~G~I~G~Yyh~~se~ 168 (187)
|||||++|....+|+--=.+-+-+-
T Consensus 3 g~~~lgi~ig~~~i~~~l~d~~G~i 27 (128)
T d1z05a3 3 GWQFLSMRLGRGYLTIALHELGGEV 27 (128)
T ss_dssp TEEEEEEEEETTEEEEEEEETTSCE
T ss_pred CCEEEEEEECCCEEEEEEEcCCCCE
Confidence 8999999998888887777666554
No 3
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.56 E-value=24 Score=21.69 Aligned_cols=11 Identities=45% Similarity=0.908 Sum_probs=8.8
Q ss_pred CeeEEEEEEcc
Q psy3119 41 SYLCGYLKIKG 51 (187)
Q Consensus 41 ~~l~G~l~I~g 51 (187)
|.|||+|..+.
T Consensus 1 s~~~G~L~~~~ 11 (99)
T d2coca1 1 SLLCGPLRLSE 11 (99)
T ss_dssp SSSEEEEEEES
T ss_pred CceEEEEEccC
Confidence 46899999875
No 4
>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=15.66 E-value=36 Score=21.20 Aligned_cols=13 Identities=31% Similarity=0.817 Sum_probs=10.9
Q ss_pred ceeeeeEEEEEEc
Q psy3119 140 ASFAGFYYICFQK 152 (187)
Q Consensus 140 aSf~GFYYIc~~~ 152 (187)
+|+.|||||-.+.
T Consensus 8 k~~~~~y~V~~e~ 20 (67)
T d1t9ha1 8 KALSGFYYVLDES 20 (67)
T ss_dssp EEETTEEEEEECS
T ss_pred EEECCEEEEEecc
Confidence 5789999998764
No 5
>d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain {Human papillomavirus type 18 [TaxId: 333761]}
Probab=14.70 E-value=46 Score=25.40 Aligned_cols=76 Identities=20% Similarity=0.396 Sum_probs=46.0
Q ss_pred CCccccCcCCCchhhHhhhcCcCCCccccccccCCCCCcccccCCCeeEeeecceeeccCCC--ccCcCCceeeeeEEEE
Q psy3119 72 YPFLTRKWDADEDVDRKHWGKFSSFYDYSKTFNSDSFDYDSLKDTDFVFMRWKEHFLVPDHT--IKDINGASFAGFYYIC 149 (187)
Q Consensus 72 ~~F~T~~W~A~~~~D~~hW~kf~~F~~~~~~~~~~~~~~~~~~~~~~IfMRWKE~Flvpd~~--v~~i~GaSf~GFYYIc 149 (187)
=+|.++.|.-. ++-.+=|. -||=.-++|.-..-...++.-.++..-|.-||+-+..+|.. .+...|+.+.|-||++
T Consensus 90 S~y~~E~WTL~-dtS~E~~~-~~P~~cfKK~g~tV~V~fD~d~~N~m~Yt~W~~IYy~~~~~~W~k~~g~vD~~GlYY~~ 167 (194)
T d1tueb_ 90 SAYKTEDWTLQ-DTCEELWN-TEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVK 167 (194)
T ss_dssp STTTTSCCCTT-TTCHHHHT-SSSTTSEEEEEEEEEEEETTCTTSEEEEEEEEEEEEECTTSCEEEECEEECSSEEEEEE
T ss_pred CcccCCCCchh-hCCHHHHc-CCCcccCccCCEEEEEEecCCcccceeeeeecEEEEEcCCCCEEEEeceecCCEEEEEE
Confidence 35666677763 56666673 34422232211111122233346789999999999886643 3556789999999974
No 6
>d1rmka_ g.3.6.1 (A:) Conotoxin {Marble cone (Conus marmoreus), mrVIb [TaxId: 42752]}
Probab=13.81 E-value=13 Score=20.40 Aligned_cols=14 Identities=50% Similarity=1.068 Sum_probs=10.7
Q ss_pred ceeeccCCCccCcCCceeeeeEEEE
Q psy3119 125 EHFLVPDHTIKDINGASFAGFYYIC 149 (187)
Q Consensus 125 E~Flvpd~~v~~i~GaSf~GFYYIc 149 (187)
|.++|| +-||-|+|
T Consensus 7 eycivp-----------i~gfiycc 20 (31)
T d1rmka_ 7 EYCIVP-----------ILGFVYCC 20 (31)
T ss_dssp SCCCCC-----------TTCCCEES
T ss_pred eEEEee-----------eeeeeeeC
Confidence 567777 66899987
No 7
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}
Probab=13.73 E-value=1.1e+02 Score=18.90 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=31.6
Q ss_pred CCCeeEeeecceeeccCCCccCcCCceeeeeEEEEEEccCCceEEE--EecCC
Q psy3119 115 DTDFVFMRWKEHFLVPDHTIKDINGASFAGFYYICFQKSAATIEGY--YFHRS 165 (187)
Q Consensus 115 ~~~~IfMRWKE~Flvpd~~v~~i~GaSf~GFYYIc~~~~~G~I~G~--Yyh~~ 165 (187)
..+.+.++|...+..+. .+.++.|..-+.+|. .|.|.-+ ||++.
T Consensus 74 ~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~d~-dGkI~~~~~y~d~~ 119 (125)
T d1ohpa1 74 VANEAAFAFIVSFEYQG------RKTVVAPIDHFRFNG-AGKVVSMRALFGEK 119 (125)
T ss_dssp ETTEEEEEEEEEEEETT------EEEEECCEEEEEECT-TSCEEEEEEECCGG
T ss_pred ecceEEEEEEEEEecCC------ceEEEEEEEEEEECC-CCeEEEEEEEECHH
Confidence 35678899988876543 345677888788874 7999886 67664
No 8
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.86 E-value=1.4e+02 Score=18.75 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=24.5
Q ss_pred CCCCCeeeEEEccCCceeeEEEE----EEeCCCCeeEEEEEEccCCCCC
Q psy3119 12 LYNGSRFQGHQKSKGNSYEIEVV----HVDEENSYLCGYLKIKGLTEEY 56 (187)
Q Consensus 12 L~pg~~F~G~Q~S~~~~y~V~V~----~VDl~~~~l~G~l~I~gLt~~~ 56 (187)
|++|+...|+ -++|+ -|++.+ .+.|++.+..+++.+
T Consensus 16 ~k~G~iv~g~--------V~~v~~~G~~V~l~~-~i~G~i~~~~ls~~~ 55 (94)
T d3bzka4 16 LKPGMVLEGV--------VTNVTNFGAFVDIGV-HQDGLVHISALSEKF 55 (94)
T ss_dssp CCTTCEEEEE--------EEEEETTEEEEECSS-SSCEEEEGGGGCSSC
T ss_pred CCCCCEEEEE--------EEEEECcEEEEEeCC-CceEEeehhhhhccc
Confidence 5666666664 22333 677754 788999999998765
No 9
>d1vh9a_ d.38.1.5 (A:) Hypothetical protein YbdB {Escherichia coli [TaxId: 562]}
Probab=11.20 E-value=73 Score=21.60 Aligned_cols=45 Identities=2% Similarity=-0.055 Sum_probs=29.8
Q ss_pred CceeeEEEE-EEeCCCCeeEEEEEEccCCCCCCceeeeeeEEEecC
Q psy3119 26 GNSYEIEVV-HVDEENSYLCGYLKIKGLTEEYPTLTTFFDGEIISK 70 (187)
Q Consensus 26 ~~~y~V~V~-~VDl~~~~l~G~l~I~gLt~~~p~itTfFeGEII~~ 70 (187)
...+.|.++ +|++-.+.-.|.+.+.+-.-+.-.=+.+.|+||-+.
T Consensus 77 ~~~~~vT~~l~v~flrp~~~g~l~a~a~v~~~Gr~~~~~e~~i~d~ 122 (138)
T d1vh9a_ 77 DGQCVVGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDE 122 (138)
T ss_dssp TTCCEEEEEEEEEECSCCCSSEEEEEEEEEEECSSEEEEEEEEECT
T ss_pred ccccccccccceeEEeccCCCeEEEEEEEEEcCCCEEEEEEEEEcC
Confidence 455677778 888877776777776665444333346778887753
No 10
>d1sc0a_ d.38.1.5 (A:) Hypothetical protein HI1161 {Haemophilus influenzae [TaxId: 727]}
Probab=10.90 E-value=81 Score=21.33 Aligned_cols=46 Identities=4% Similarity=0.034 Sum_probs=31.5
Q ss_pred CCceeeEEEE-EEeCCCCeeEEEEEEccCCCCCCceeeeeeEEEecC
Q psy3119 25 KGNSYEIEVV-HVDEENSYLCGYLKIKGLTEEYPTLTTFFDGEIISK 70 (187)
Q Consensus 25 ~~~~y~V~V~-~VDl~~~~l~G~l~I~gLt~~~p~itTfFeGEII~~ 70 (187)
+...+.|.++ +|++-.+--.|.+.|.+-.-+.-.=+.+.|+||-+.
T Consensus 74 ~~~~~~~T~~l~v~flrp~~~g~l~a~a~v~~~Gr~~~~~e~~i~~~ 120 (137)
T d1sc0a_ 74 EEGKTVVGLDINANHLRPVRSGKVTARATPINLGRNIQVWQIDIRTE 120 (137)
T ss_dssp CTTCEEEEEEEEEEECSCCCSSEEEEEEEEEEECSSEEEEEEEEECT
T ss_pred cccceeEeeeEEEEEEeecCCCeEEEEEEEEEcCccEEEEEEEEEeC
Confidence 4456777778 888877777777777665554444446778888754
Done!