RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3119
(187 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 1e-09
Identities = 32/149 (21%), Positives = 50/149 (33%), Gaps = 34/149 (22%)
Query: 19 QGHQKSKG---NSYEIEVV--HV-DEENSYLCGYL--KIKGLTEEYPT-LTTFFDGE--- 66
QG Q +G + Y+ V + +++ I + P LT F GE
Sbjct: 1624 QGSQ-EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 67 IISKKYPFLTRKWDADEDVDRKHWGKFSSFYDYSKTFNSDSFDYDSLKDTDF-------- 118
I + Y + + D + + K + + S TF S+ L T F
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK---GLLSATQFTQPALTLM 1739
Query: 119 ---VFMRWKEHFLVPDHTIKDINGASFAG 144
F K L+P A+FAG
Sbjct: 1740 EKAAFEDLKSKGLIPA-------DATFAG 1761
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 31.0 bits (70), Expect = 0.18
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 25 KGNSYEIEVVHVD-EENSYLCGYLKIKGLTEEYPTLTTFFDGEIISKKYPFLTRKWDADE 83
K I V +D S L + G YPT+ G+ + + R +
Sbjct: 62 KDKDPPIPVAKIDATSASVLASRFDVSG----YPTIKILKKGQAVDYEGS---RTQEEIV 114
Query: 84 DVDRKHWGKFSSFYDYSKTFNSDSFDYDSLKDTDFVF 120
R+ + + + + D D +
Sbjct: 115 AKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIIL 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.55
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 32 EVVHVDEENSYLCGYLKIKGLTEEYPT-LTTFFDGEIISKKYPFLTRKWDADEDVDRKHW 90
E+ H+ + G L++ + F E++ Y FL E
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPS-- 106
Query: 91 GKFSSFYDY-SKTFNS 105
+ + + +N
Sbjct: 107 MMTRMYIEQRDRLYND 122
Score = 27.9 bits (61), Expect = 2.3
Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 25/128 (19%)
Query: 35 HVDEENSYLCG-YLKIKGLTEEYPTLTTFFDGEIISKKYPFLTRKWDADEDVDRKHWGKF 93
E + YL++K E L I Y + +D+D+ + F
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIP-KTFDSDDLIPPYLDQYF 473
Query: 94 SSFYDY--SKTFNSDSFDYDSLKDTDFVFMRWK-EHFLVPD-------HTIKDINGASFA 143
S + + + + DF F+ K H +T++ +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK----- 528
Query: 144 GFY--YIC 149
FY YIC
Sbjct: 529 -FYKPYIC 535
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 28.0 bits (63), Expect = 1.1
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 30 EIEVVHVD-EENSYLCGYLKIKGLTEEYPTLTTFFDGEII 68
E+ + VD E L G I PT+ DGE
Sbjct: 55 EVNIAKVDVTEQPGLSGRFIINA----LPTIYHCKDGEFR 90
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 28.4 bits (63), Expect = 1.5
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 22 QKSKGNSYEIEVVHVD-EENSYLCGYLKIKGLTEEYPTLTTFFDGEIISKKYP 73
++ N ++ VD +++S + +I YPTL F +G ++ ++Y
Sbjct: 52 KEEFPNENQVVFARVDCDQHSDIAQRYRISK----YPTLKLFRNGMMMKREYR 100
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 27.3 bits (61), Expect = 1.7
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 22 QKSKGNSYEIEVVHVD-EENSYLCGYLKIKGLTEEYPTLTTFFDGEIISK 70
+K +++ VD +C ++G YPTL F G+ +S+
Sbjct: 48 KKEFPGLAGVKIAEVDCTAERNICSKYSVRG----YPTLLLFRGGKKVSE 93
>4euy_A Uncharacterized protein; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, unknown
function; 2.90A {Bacillus cereus}
Length = 105
Score = 26.9 bits (60), Expect = 2.0
Identities = 7/43 (16%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 30 EIEVVHVD-EENSYLCGYLKIKGLTEEYPTLTTFFDGEIISKK 71
+E + + ++ + G + PT+ F++G+ I ++
Sbjct: 49 YVEKIEILLQDMQEIAGRYAVFTG----PTVLLFYNGKEILRE 87
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA
associated factor 29; histone, tudor domain, histone
binding protei; HET: MLY MAL; 1.48A {Escherichia coli}
PDB: 3mp1_A* 3mp8_A*
Length = 522
Score = 27.9 bits (62), Expect = 2.2
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 56 YPTLTTFFDGEIISKKYPFLTR-KWDADEDVDRK 88
YP TTF+ +I K R ++D +E+VD++
Sbjct: 468 YPETTTFYPAIVIGTKRDGTCRLRFDGEEEVDKE 501
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 26.6 bits (59), Expect = 3.4
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 30 EIEVVHVD-EENSYLCGYLKIKGLTEEYPTLTTFFDGEIISKKY 72
++ VD + C IK YP++ + +
Sbjct: 53 KVRAGKVDCQAYPQTCQKAGIKA----YPSVKLYQYERAKKSIW 92
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 27.3 bits (60), Expect = 3.9
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 50 KGLTEEYPTLTTFFD 64
G+ EE P ++D
Sbjct: 826 HGMKEEVPGWQEYYD 840
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 27.2 bits (61), Expect = 4.1
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 80 DADEDVDRKHWGKFSSFYDYSKTFNSDSFDYDSLKDTDFVFMRWKEHF-LVPDHTIKDIN 138
D +++V + WGK + + + F S + ++ K H L+ D
Sbjct: 119 DENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKP---KLHVDLLEILGGADFA 175
Query: 139 GA---SFAGFYY 147
A S + FYY
Sbjct: 176 RAAKVSGSRFYY 187
>1x0p_A Hypothetical protein TLL0078; BLUF, FAD, structural genomics,
electron transport; HET: FAD; 2.00A
{Thermosynechococcus elongatus} SCOP: d.58.10.2
Length = 143
Score = 26.2 bits (57), Expect = 5.2
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 1 NSKQPGVTGTLLYNGSRF----QGHQKSKGNSYE 30
N+ + G+TG L Y F +G ++ +Y
Sbjct: 31 NNLRDGITGMLCYGNGMFLQTLEGDRQKVSETYA 64
>2hfn_A Synechocystis photoreceptor (SLR1694); beta sheet ferredoxin-like
fold, flavin binding protein, electron transport; HET:
FMN; 1.80A {Synechocystis SP} PDB: 2hfo_A* 3mzi_A*
Length = 153
Score = 25.8 bits (56), Expect = 6.2
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 1 NSKQPGVTGTLLYNGSRFQGHQKSKGNSYEIEVVH 35
N+ G+TG L Y+ F Q +G ++ +
Sbjct: 34 NNPANGITGLLCYSKPAF--LQVLEGECEQVNETY 66
>1yrx_A Hypothetical protein RSPH03001874; ferredoxin-like fold, flavin
binding, photoreceptor, transcr; HET: FMN D9G; 2.30A
{Rhodobacter sphaeroides 2} SCOP: d.58.10.2 PDB:
2bun_A*
Length = 121
Score = 25.7 bits (56), Expect = 6.3
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 1 NSKQPGVTGTLLYNGSRF 18
++ + +TG L Y+ F
Sbjct: 32 HNARAQLTGALFYSQGVF 49
>2byc_A Blue-light receptor of the BLUF-family; signaling protein,
photoreceptor, flavin; HET: FMN; 1.9A {Rhodobacter
sphaeroides} SCOP: d.58.10.2
Length = 137
Score = 25.8 bits (56), Expect = 6.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 1 NSKQPGVTGTLLYNGSRF 18
+ + G+TG LLYNG F
Sbjct: 33 RNLRLGITGILLYNGVHF 50
>2iyg_A APPA, antirepressor of PPSR, sensor of blue light; signal
transduction; HET: FMN; 2.3A {Rhodobacter sphaeroides}
PDB: 2iyi_A*
Length = 124
Score = 25.3 bits (55), Expect = 8.6
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 1 NSKQPGVTGTLLYNGSRF 18
++ + +TG L Y+ F
Sbjct: 44 HNARAQLTGALFYSQGVF 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.437
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,007,688
Number of extensions: 172268
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 35
Length of query: 187
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 99
Effective length of database: 4,244,745
Effective search space: 420229755
Effective search space used: 420229755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)