RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3119
         (187 letters)



>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 195

 Score = 28.1 bits (62), Expect = 0.46
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 1/110 (0%)

Query: 64  DGEIISKKYPFLTRKWDAD-EDVDRKHWGKFSSFYDYSKTFNSDSFDYDSLKDTDFVFMR 122
           +   IS  +P L    +A  E  DR     F     ++    +    Y     + F F R
Sbjct: 43  ELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPR 102

Query: 123 WKEHFLVPDHTIKDINGASFAGFYYICFQKSAATIEGYYFHRSSEWFQSL 172
             +H               F    Y  + +   +++  Y    +  F  +
Sbjct: 103 TVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGI 152


>d2ozna1 b.2.2.2 (A:774-906) O-GlcNAcase NagJ {Clostridium
           perfringens [TaxId: 1502]}
          Length = 133

 Score = 27.1 bits (60), Expect = 0.72
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 97  YDYSKTFNSDSFDYDSLKDTDFVFMRWKE------HFLVPDHTIKDINGAS 141
           YD++  ++ ++F+Y      D VF+  K+        LV   T + +    
Sbjct: 37  YDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKE 87


>d1yrxa1 d.58.10.2 (A:17-130) Sensor of blue light AppA
          {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 114

 Score = 26.8 bits (59), Expect = 0.79
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 1  NSKQPGVTGTLLYNGSRF 18
          ++ +  +TG L Y+   F
Sbjct: 28 HNARAQLTGALFYSQGVF 45


>d2byca1 d.58.10.2 (A:1-136) Blue light receptor BlrB {Rhodobacter
          sphaeroides [TaxId: 1063]}
          Length = 136

 Score = 26.8 bits (59), Expect = 1.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 1  NSKQPGVTGTLLYNGSRF 18
           + + G+TG LLYNG  F
Sbjct: 32 RNLRLGITGILLYNGVHF 49


>d1x0pa1 d.58.10.2 (A:102-243) Hypothetical protein Tll0078
          {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 142

 Score = 26.5 bits (58), Expect = 1.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 1  NSKQPGVTGTLLYNGSRF 18
          N+ + G+TG L Y    F
Sbjct: 30 NNLRDGITGMLCYGNGMF 47


>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 105

 Score = 26.0 bits (57), Expect = 1.5
 Identities = 6/27 (22%), Positives = 16/27 (59%)

Query: 52 LTEEYPTLTTFFDGEIISKKYPFLTRK 78
          L E+  T++   + + +S K  +++R+
Sbjct: 34 LAEDALTVSPLSEAKHVSLKMAYVSRR 60


>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 117

 Score = 25.0 bits (54), Expect = 4.1
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 48  KIKGLTEEYPTLTTFFD 64
           K  G+ EE P    ++D
Sbjct: 99  KRHGMKEEVPGWQEYYD 115


>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 205

 Score = 25.0 bits (54), Expect = 5.3
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 5/40 (12%)

Query: 13  YNGSRFQGHQKSK-GNSYEIEVVHVDEENSYLCGYLKIKG 51
           Y G R  GH   +      +EVV +    + +     +KG
Sbjct: 151 YKGKRMAGHMGMERVTVQNLEVVEIRAGENLIL----VKG 186


>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 494

 Score = 24.6 bits (52), Expect = 9.0
 Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 1/93 (1%)

Query: 56  YPTLTTFFDGEIISKKYPFLTRKWDADEDVDRKHWGK-FSSFYDYSKTFNSDSFDYDSLK 114
             +       +  + + PF   K +A   VD+   G   +  +     F +       + 
Sbjct: 311 DSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMV 370

Query: 115 DTDFVFMRWKEHFLVPDHTIKDINGASFAGFYY 147
             +  F       +V   T         +    
Sbjct: 371 KVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRL 403


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 772,841
Number of extensions: 36642
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 16
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)