BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy312
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V439|MED22_DROME Mediator of RNA polymerase II transcription subunit 22
OS=Drosophila melanogaster GN=MED22 PE=1 SV=1
Length = 143
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 78/89 (87%)
Query: 2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
TQCE D EM VRA N+VRAGESL+KLV+D+KQYLILNDF SVNEAIT NS+LFR Q+E
Sbjct: 55 TQCEQDALEMQVRAANMVRAGESLMKLVADLKQYLILNDFHSVNEAITNNSQLFRNTQSE 114
Query: 62 CDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
CD+KLM LRD+MA DLYDLEEEYYTS++K
Sbjct: 115 CDKKLMKLRDEMAMDLYDLEEEYYTSIFK 143
>sp|Q178E6|MED22_AEDAE Mediator of RNA polymerase II transcription subunit 22 OS=Aedes
aegypti GN=MED22 PE=3 SV=1
Length = 138
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 78/90 (86%)
Query: 1 MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
MTQCE D YEM VRA NIVRAGESL+KLVSDIKQYLILNDF SVNEAI +S+L+R+ Q
Sbjct: 49 MTQCEQDTYEMQVRASNIVRAGESLMKLVSDIKQYLILNDFHSVNEAICSSSQLYRSTQM 108
Query: 61 ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
+ D KLM +RDDMAADLYDLEEEYYTS+YK
Sbjct: 109 DRDNKLMAVRDDMAADLYDLEEEYYTSMYK 138
>sp|Q7QB45|MED22_ANOGA Mediator of RNA polymerase II transcription subunit 22 OS=Anopheles
gambiae GN=MED22 PE=3 SV=3
Length = 138
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 76/90 (84%)
Query: 1 MTQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQT 60
+TQCE D YE VRA NIVRAGESL+KLVSDIKQYLILNDF SVNEAI NS L+RT Q
Sbjct: 49 ITQCEQDTYETQVRAANIVRAGESLMKLVSDIKQYLILNDFHSVNEAICSNSTLYRTTQI 108
Query: 61 ECDQKLMNLRDDMAADLYDLEEEYYTSVYK 90
+ D KLM +RDDMAADLYDLEEEYYTS+YK
Sbjct: 109 DRDNKLMAVRDDMAADLYDLEEEYYTSIYK 138
>sp|A5WUL3|MED22_DANRE Mediator of RNA polymerase II transcription subunit 22 OS=Danio
rerio GN=med22 PE=2 SV=1
Length = 198
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 75/86 (87%)
Query: 2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
TQ E D +EMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI+ ++ RT Q E
Sbjct: 52 TQAEQDHFEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAISLRNQQLRTLQEE 111
Query: 62 CDQKLMNLRDDMAADLYDLEEEYYTS 87
CD+KL++LRD++A DLY+LEEEYY+S
Sbjct: 112 CDKKLISLRDEIAIDLYELEEEYYSS 137
>sp|Q15528|MED22_HUMAN Mediator of RNA polymerase II transcription subunit 22 OS=Homo
sapiens GN=MED22 PE=1 SV=2
Length = 200
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 63/75 (84%)
Query: 2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++ RT Q E
Sbjct: 52 TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEE 111
Query: 62 CDQKLMNLRDDMAAD 76
CD+KL+ LRD+++ D
Sbjct: 112 CDRKLITLRDEISID 126
>sp|Q800L3|MED22_CHICK Mediator of RNA polymerase II transcription subunit 22 OS=Gallus
gallus GN=MED22 PE=3 SV=1
Length = 203
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 63/75 (84%)
Query: 2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++ R+ Q E
Sbjct: 52 TQSEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAINQRNQQLRSLQEE 111
Query: 62 CDQKLMNLRDDMAAD 76
CD+KL+ LRD+++ D
Sbjct: 112 CDKKLIALRDEISID 126
>sp|Q6GQ95|MED22_XENLA Mediator of RNA polymerase II transcription subunit 22 OS=Xenopus
laevis GN=med22 PE=2 SV=1
Length = 201
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 63/75 (84%)
Query: 2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
TQ E D YEMHVR+ NIVRAGESL+KLVSD+KQ+LILNDFPSVNE+I Q ++ RT + E
Sbjct: 52 TQGEQDNYEMHVRSANIVRAGESLMKLVSDLKQFLILNDFPSVNESINQRNQQLRTLREE 111
Query: 62 CDQKLMNLRDDMAAD 76
CD+KL+ LRDD+A D
Sbjct: 112 CDKKLIALRDDIAID 126
>sp|Q62276|MED22_MOUSE Mediator of RNA polymerase II transcription subunit 22 OS=Mus
musculus GN=Med22 PE=2 SV=2
Length = 200
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 62/75 (82%)
Query: 2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++ R Q E
Sbjct: 52 TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEE 111
Query: 62 CDQKLMNLRDDMAAD 76
CD+KL+ LRD+++ D
Sbjct: 112 CDRKLITLRDEVSID 126
>sp|A0JPN6|MED22_RAT Mediator of RNA polymerase II transcription subunit 22 OS=Rattus
norvegicus GN=Med22 PE=2 SV=1
Length = 200
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 62/75 (82%)
Query: 2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++ R Q E
Sbjct: 52 TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEE 111
Query: 62 CDQKLMNLRDDMAAD 76
CD+KL+ LRD+++ D
Sbjct: 112 CDRKLITLRDEVSID 126
>sp|Q5E9K2|MED22_BOVIN Mediator of RNA polymerase II transcription subunit 22 OS=Bos
taurus GN=MED22 PE=2 SV=1
Length = 201
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 62/75 (82%)
Query: 2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
TQ E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVNEAI Q ++ R Q E
Sbjct: 52 TQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEE 111
Query: 62 CDQKLMNLRDDMAAD 76
CD+KL+ LRD+++ D
Sbjct: 112 CDRKLIALRDEVSID 126
>sp|O57595|MED22_TAKRU Mediator of RNA polymerase II transcription subunit 22 OS=Takifugu
rubripes GN=med22 PE=3 SV=2
Length = 200
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 63/75 (84%)
Query: 2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61
Q E D YEMHVRA NIVRAGESL+KLVSD+KQ+LILNDFPSVN+AI+ ++ R+ Q E
Sbjct: 52 AQAEQDHYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNDAISLQNQQLRSLQEE 111
Query: 62 CDQKLMNLRDDMAAD 76
CD+KL++LRD++A D
Sbjct: 112 CDKKLISLRDEIAID 126
>sp|Q54XB0|MED22_DICDI Putative mediator of RNA polymerase II transcription subunit 22
OS=Dictyostelium discoideum GN=med22 PE=3 SV=1
Length = 149
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 54/84 (64%)
Query: 7 DLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKL 66
++YEM R N++ AGE LLK++ ++KQ LILNDF ++ E + + +F + ++ +
Sbjct: 58 EIYEMETRTSNMLNAGEGLLKIIEELKQNLILNDFSTMAEEVRIQNLVFHKENERTNKSI 117
Query: 67 MNLRDDMAADLYDLEEEYYTSVYK 90
+ ++++ L +LE+EYY S YK
Sbjct: 118 KLISEELSRSLKELEDEYYNSSYK 141
>sp|Q8LCH5|MD22B_ARATH Mediator of RNA polymerase II transcription subunit 22b
OS=Arabidopsis thaliana GN=MED22B PE=1 SV=1
Length = 154
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 9 YEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMN 68
Y M +RA +V+A +SLLKLVS++KQ I + F S+N+ + Q + F + + ++ L
Sbjct: 68 YMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLAR 127
Query: 69 LRDDMAADLYDLEEEYYTSVYK 90
+ DD +A+L +LE YY+S +
Sbjct: 128 IADDASANLKELESHYYSSAQR 149
>sp|Q9SA42|MD22A_ARATH Mediator of RNA polymerase II transcription subunit 22a
OS=Arabidopsis thaliana GN=MED22A PE=1 SV=1
Length = 150
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 9 YEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMN 68
Y M +RA +V+A +SLLKLVS++KQ I + F S+N+ + Q F + + ++ L
Sbjct: 65 YMMEMRASRLVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIAEFDQEAEKTNRLLAR 124
Query: 69 LRDDMAADLYDLEEEYYTSVYK 90
+ DD +A L +LE YY+S +
Sbjct: 125 IADDASASLKELESHYYSSAQR 146
>sp|Q23679|MED22_CAEEL Mediator of RNA polymerase II transcription subunit 22
OS=Caenorhabditis elegans GN=mdt-22 PE=3 SV=1
Length = 157
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 10 EMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMN- 68
EM VRA +VRA + LLKL +D+K++LIL+DF + I Q + +C++ L
Sbjct: 74 EMAVRAQLMVRASDELLKLTADLKEFLILHDFHFLTHNIKQ-------AEAQCEETLRQQ 126
Query: 69 ------LRDDMAADLYDLEEEYYTSVY 89
L +++ L+DLE E + Y
Sbjct: 127 SHQHNCLDSEVSNILFDLEREIAENFY 153
>sp|Q626S1|MED22_CAEBR Mediator of RNA polymerase II transcription subunit 22
OS=Caenorhabditis briggsae GN=mdt-22 PE=3 SV=1
Length = 153
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 14/81 (17%)
Query: 10 EMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMN- 68
EM VRA +VRA + LL+L +D+K++LIL+DF + I Q +++C+ L
Sbjct: 71 EMAVRAQLMVRASDELLRLTTDLKEFLILHDFHFLTHNIKQ-------AESQCEDTLRQQ 123
Query: 69 ------LRDDMAADLYDLEEE 83
L D++ L+ LEEE
Sbjct: 124 SHLHQALDTDVSNMLFALEEE 144
>sp|B4EYV7|EFG_PROMH Elongation factor G OS=Proteus mirabilis (strain HI4320) GN=fusA
PE=3 SV=1
Length = 704
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 20 RAGESLLKLVSDIKQYLILNDFP-----SVNEAITQNSKLFRTKQ---TECDQKLMNLRD 71
R G + L++V IK L N P E T L + K E DQ + +
Sbjct: 146 RMGANFLRVVEQIKTRLAANPVPLQIPVGAEEDFTGVVDLIKMKAIRWNEEDQGVTFEYE 205
Query: 72 DMAADLYDLEEEYYTSV 88
D+ ADL DL EE++ ++
Sbjct: 206 DIPADLQDLAEEWHNNL 222
>sp|A8AQM8|EFG_CITK8 Elongation factor G OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=fusA PE=3 SV=1
Length = 704
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 20 RAGESLLKLVSDIKQYLILNDFP-----SVNEAITQNSKLFRTKQ---TECDQKLMNLRD 71
R G + LK+V IK L N P EA T L + K E D + +
Sbjct: 146 RMGANFLKVVGQIKSRLGANPVPLQLAIGAEEAFTGVVDLVKMKAINWNEADAGVTFTYE 205
Query: 72 DMAADLYDLEEEYYTSV 88
D+ AD+ +L EE++ ++
Sbjct: 206 DIPADMQELAEEWHQNL 222
>sp|C5BGM8|EFG_EDWI9 Elongation factor G OS=Edwardsiella ictaluri (strain 93-146)
GN=fusA PE=3 SV=1
Length = 702
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 20 RAGESLLKLVSDIKQYLILNDFP-----SVNEAITQNSKLFRTKQ---TECDQKLMNLRD 71
R G + LK+V+ IK L N P EA T L + K E DQ + +
Sbjct: 146 RMGANFLKVVNQIKTRLGANPVPLQLAIGAEEAFTGIVDLVKMKAINWNEADQGVTFTYE 205
Query: 72 DMAADLYDLEEEYY 85
D+ AD+ +L E++
Sbjct: 206 DIPADMVELANEWH 219
>sp|C6DG80|EFG_PECCP Elongation factor G OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=fusA PE=3 SV=1
Length = 704
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 20 RAGESLLKLVSDIKQYLILNDFP-----SVNEAITQNSKLFRTKQ---TECDQKLMNLRD 71
R G + LK+V IK L N P E T L + K + DQ + +
Sbjct: 146 RMGANFLKVVGQIKSRLGANPVPLQLAIGAEEGFTGVVDLVKMKAINWNDADQGVTFEYE 205
Query: 72 DMAADLYDLEEEYYTSV 88
D+ AD+ DL +E++ ++
Sbjct: 206 DIPADMQDLADEWHQNL 222
>sp|O51876|ATPF_BUCAP ATP synthase subunit b OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=atpF PE=3 SV=2
Length = 163
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 33 KQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDL 80
K+ +IL D S+ A+ ++ K+F Q E D K+M +R ++ ++ DL
Sbjct: 82 KKSIILEDAKSI--ALEESKKIFLRNQLEIDLKVMQVRKNLHKEIVDL 127
>sp|Q0HIK2|DGTL1_SHESM Deoxyguanosinetriphosphate triphosphohydrolase-like protein
OS=Shewanella sp. (strain MR-4) GN=Shewmr4_2042 PE=3
SV=1
Length = 446
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 41 FPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEE 82
F SV ++ N RT+ D +M L DD+A ++DLE+
Sbjct: 217 FTSVQPSLQPNYPHLRTQFKSFDCSIMELADDIAYAVHDLED 258
>sp|Q0HVD3|DGTL1_SHESR Deoxyguanosinetriphosphate triphosphohydrolase-like protein
OS=Shewanella sp. (strain MR-7) GN=Shewmr7_1933 PE=3
SV=1
Length = 446
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 41 FPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEE 82
F SV ++ N RT+ D +M L DD+A ++DLE+
Sbjct: 217 FTSVQPSLQPNYPHLRTQFKSFDCSIMELADDIAYAVHDLED 258
>sp|A7MKJ6|EFG_CROS8 Elongation factor G OS=Cronobacter sakazakii (strain ATCC BAA-894)
GN=fusA PE=3 SV=1
Length = 704
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 20 RAGESLLKLVSDIKQYLILNDFP-----SVNEAITQNSKLFRTKQ---TECDQKLMNLRD 71
R G + LK+V IK L N P E T L + K + DQ + +
Sbjct: 146 RMGANFLKVVGQIKTRLGANPVPLQLAIGAEEGFTGVVDLVKMKAINWNDADQGVTFEYE 205
Query: 72 DMAADLYDLEEEYYTSV 88
D+ AD+ DL +E++ ++
Sbjct: 206 DIPADMQDLADEWHQNL 222
>sp|A0KX58|DGTL1_SHESA Deoxyguanosinetriphosphate triphosphohydrolase-like protein
OS=Shewanella sp. (strain ANA-3) GN=Shewana3_2147 PE=3
SV=1
Length = 446
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 41 FPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEE 82
F SV ++ N RT+ D +M L DD+A ++DLE+
Sbjct: 217 FTSVQPSLQPNYPHLRTQFKSFDCSIMELADDIAYAVHDLED 258
>sp|A9MN39|EFG_SALAR Elongation factor G OS=Salmonella arizonae (strain ATCC BAA-731 /
CDC346-86 / RSK2980) GN=fusA PE=3 SV=1
Length = 704
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 20 RAGESLLKLVSDIKQYLILNDFP-----SVNEAITQNSKLFRTKQ---TECDQKLMNLRD 71
R G + LK+V IK L N P E T L + K + DQ + +
Sbjct: 146 RMGANFLKVVGQIKTRLGANPVPLQLAIGAEEGFTGVVDLVKMKAINWNDADQGVTFEYE 205
Query: 72 DMAADLYDLEEEYYTSV 88
D+ AD+ DL +E++ ++
Sbjct: 206 DIPADMQDLADEWHQNL 222
>sp|Q8N2F6|ARM10_HUMAN Armadillo repeat-containing protein 10 OS=Homo sapiens GN=ARMC10
PE=1 SV=1
Length = 343
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 6 LDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQK 65
L LY+ HV ++R +L L +IK L + +V T+ S F EC QK
Sbjct: 265 LSLYDSHVAKEILLR----VLTLFQNIKNCLKIEGHLAVQPTFTEGSLFFLLHGEECAQK 320
Query: 66 LMNLRDDMAADL 77
+ L D A++
Sbjct: 321 IRALVDHHDAEV 332
>sp|Q87L45|EFG1_VIBPA Elongation factor G 1 OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=fusA1 PE=3 SV=1
Length = 699
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 20 RAGESLLKLVSDIKQYLILNDFP-SVNEAITQNSK----LFRTKQ---TECDQKLMNLRD 71
RAG L++V IK L N P +N ++ + L + K + DQ + +
Sbjct: 146 RAGADFLRVVDQIKNRLGANPVPIQLNVGAEEDFRGVIDLIKMKMINWNDADQGMSFTYE 205
Query: 72 DMAADLYDLEEEY 84
D+ AD+ DL EE+
Sbjct: 206 DIPADMIDLAEEW 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,316,742
Number of Sequences: 539616
Number of extensions: 909532
Number of successful extensions: 2955
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2932
Number of HSP's gapped (non-prelim): 47
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)