Query psy312
Match_columns 90
No_of_seqs 61 out of 63
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 16:56:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h63_V Mediator of RNA polymer 99.7 1.5E-18 5.2E-23 122.0 -1.4 81 2-85 46-126 (135)
2 1q08_A Zn(II)-responsive regul 57.1 29 0.00099 20.8 7.0 43 29-71 19-67 (99)
3 1i6z_A BAG-family molecular ch 57.0 40 0.0014 23.2 6.4 58 18-75 68-125 (135)
4 3he5_B Synzip2; heterodimeric 54.5 29 0.001 20.1 4.9 25 51-75 18-42 (52)
5 3vmx_A Voltage-gated hydrogen 54.4 24 0.00083 20.5 4.2 33 39-71 7-39 (48)
6 2pnv_A Small conductance calci 47.8 23 0.00079 19.9 3.3 30 38-67 11-40 (43)
7 3u66_A SCIP/TSSL, putative typ 47.2 28 0.00096 24.4 4.5 46 16-61 7-52 (183)
8 2ke4_A CDC42-interacting prote 44.2 61 0.0021 20.8 6.2 53 18-81 34-89 (98)
9 3r84_B Mediator of RNA polymer 44.2 34 0.0012 22.3 4.1 31 11-41 61-91 (92)
10 3gp4_A Transcriptional regulat 37.0 88 0.003 20.5 7.0 42 29-70 62-108 (142)
11 1r8e_A Multidrug-efflux transp 35.5 1.1E+02 0.0038 21.2 6.3 44 29-73 66-109 (278)
12 3gpv_A Transcriptional regulat 34.0 1E+02 0.0034 20.3 7.0 43 29-71 76-123 (148)
13 1fxk_A Prefoldin; archaeal pro 31.5 84 0.0029 19.1 4.4 46 36-85 58-103 (107)
14 1zvz_B Talin 1, metavinculin; 31.5 23 0.00078 17.7 1.4 17 17-33 2-22 (26)
15 1hx1_B BAG-1, BAG-family molec 30.0 27 0.00093 23.5 2.0 57 17-73 57-113 (114)
16 2e50_A Protein SET; histone ch 29.0 1.6E+02 0.0055 21.1 6.2 30 57-86 33-62 (225)
17 3m91_A Proteasome-associated A 28.7 87 0.003 18.0 5.2 29 46-74 19-47 (51)
18 3e35_A Uncharacterized protein 24.5 1.4E+02 0.0049 22.7 5.4 54 20-84 215-272 (325)
19 3l39_A Putative PHOU-like phos 24.5 1.2E+02 0.004 21.2 4.6 22 14-35 132-153 (227)
20 2zqm_A Prefoldin beta subunit 23.1 1.4E+02 0.0047 18.3 5.8 46 36-85 63-108 (117)
21 1dow_A Alpha-catenin; four-hel 22.8 1.4E+02 0.0048 21.3 4.8 32 16-50 66-97 (205)
22 3iqt_A Signal transduction his 22.1 1.6E+02 0.0055 18.8 5.3 59 23-81 59-119 (123)
23 1hjb_A Ccaat/enhancer binding 22.0 1.5E+02 0.0053 18.5 5.0 28 47-74 40-67 (87)
24 1skv_A ORF D-63, hypothetical 21.9 1.5E+02 0.0051 18.3 5.6 20 24-43 20-39 (69)
25 3ljb_A Interferon-induced GTP- 21.8 2.5E+02 0.0084 20.8 7.4 45 22-67 112-156 (271)
26 1uru_A Amphiphysin; endocytosi 21.7 1.9E+02 0.0066 19.5 5.3 25 29-55 118-142 (244)
27 2olt_A Hypothetical protein; s 21.3 2E+02 0.0068 19.5 8.7 59 12-71 123-182 (227)
28 1gu4_A CAAT/enhancer binding p 20.1 1.6E+02 0.0056 18.0 5.0 29 46-74 39-67 (78)
29 1cxz_B Protein (PKN); protein- 20.0 1.8E+02 0.006 18.4 4.6 41 18-74 40-80 (86)
No 1
>4h63_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=99.68 E-value=1.5e-18 Score=121.96 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHhHHHHHHhHhhHHHHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy312 2 TQCELDLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLE 81 (90)
Q Consensus 2 tq~~qe~fem~vRAa~mVrAaesLLkLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrdel~~~L~eLE 81 (90)
++.+++.|+|++||++||||||+||+|+++||+++|||||+++|+.++.+..++++..+++++....|.+ ..+.++|
T Consensus 46 ~~~A~e~~~~~~~~~~~vra~e~LL~L~r~lKe~wllg~l~~~~e~~~~~e~~~e~~~~~~~~l~~~l~~---~~l~e~~ 122 (135)
T 4h63_V 46 YTVAPEVYQIECHTVSMVRAVEQLLDVSRQIKSYWLTNSLSTSFPTVDYSEPDLEKVKRTLTKLQNHLLE---VSLIEPE 122 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCCCCCCSCCCHHHHHHHHHHHHTTTCC---CCSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHHHH---HhccCcc
Confidence 4568999999999999999999999999999999999999999999999998899999999988887776 4444555
Q ss_pred HHHh
Q psy312 82 EEYY 85 (90)
Q Consensus 82 ~eYY 85 (90)
..++
T Consensus 123 ~~e~ 126 (135)
T 4h63_V 123 ASET 126 (135)
T ss_dssp ----
T ss_pred cccc
Confidence 4443
No 2
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=57.13 E-value=29 Score=20.85 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcC------hhhHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q psy312 29 VSDIKQYLILND------FPSVNEAITQNSKLFRTKQTECDQKLMNLRD 71 (90)
Q Consensus 29 vseLKq~LIL~D------F~~lne~i~~~~~~~~~~~~~~d~~l~~lrd 71 (90)
+.|||++|=+.+ .+.+.+.+..+...++++..+..+....|..
T Consensus 19 L~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 67 (99)
T 1q08_A 19 LESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQR 67 (99)
T ss_dssp HHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899887642 3455666666666666666666555554443
No 3
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=56.95 E-value=40 Score=23.22 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=51.3
Q ss_pred HHHhHhhHHHHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q psy312 18 IVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAA 75 (90)
Q Consensus 18 mVrAaesLLkLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrdel~~ 75 (90)
+.-.+|-+||+...|=..-|=.||...-.-+..-+...+.....||.....+.+++..
T Consensus 68 ik~~~E~~Mk~LE~LDs~~ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~~~~~~~ 125 (135)
T 1i6z_A 68 VKATIEQFMKILEEIDTMVLPEQFKDSRLKRKNLVKKVQVFLAECDTVEQYICQETER 125 (135)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667999999999999999999999888888888899999999999999999998764
No 4
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=54.53 E-value=29 Score=20.07 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHH
Q psy312 51 NSKLFRTKQTECDQKLMNLRDDMAA 75 (90)
Q Consensus 51 ~~~~~~~~~~~~d~~l~~lrdel~~ 75 (90)
-+-+++.....+.+.++.||||++.
T Consensus 18 dnlqlerdeqnlekiianlrdeiar 42 (52)
T 3he5_B 18 DNLQLERDEQNLEKIIANLRDEIAR 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHhhHHHHHHHHHHHHHH
Confidence 3445666667788889999999885
No 5
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=54.37 E-value=24 Score=20.46 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=26.0
Q ss_pred cChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q psy312 39 NDFPSVNEAITQNSKLFRTKQTECDQKLMNLRD 71 (90)
Q Consensus 39 ~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrd 71 (90)
++...+|+...+++.+++..+.+..+.+.+|+.
T Consensus 7 ~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 7 LRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 344567889999999999999888888776653
No 6
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=47.75 E-value=23 Score=19.90 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=15.2
Q ss_pred hcChhhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy312 38 LNDFPSVNEAITQNSKLFRTKQTECDQKLM 67 (90)
Q Consensus 38 L~DF~~lne~i~~~~~~~~~~~~~~d~~l~ 67 (90)
.+|+.+=.+.++.|+..++.+.+.....+.
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555554444443
No 7
>3u66_A SCIP/TSSL, putative type VI secretion protein; duble helical bundle, protein secretion, attached to inner M unknown function; 2.63A {Escherichia coli}
Probab=47.20 E-value=28 Score=24.40 Aligned_cols=46 Identities=15% Similarity=-0.006 Sum_probs=41.8
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHH
Q psy312 16 GNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTE 61 (90)
Q Consensus 16 a~mVrAaesLLkLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~ 61 (90)
.+|+.++--++.+|..|+...-..|...+-+.+...++.|++...+
T Consensus 7 ~~i~~l~~~~l~lv~~Lr~~~~~~d~~~lr~~~~~~i~~~e~~~~~ 52 (183)
T 3u66_A 7 SRAEQIFYPGWLMVSQLRSGQPVEDGKALYRRACQLVKQAREELAE 52 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999988653
No 8
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=44.22 E-value=61 Score=20.76 Aligned_cols=53 Identities=21% Similarity=0.159 Sum_probs=36.2
Q ss_pred HHHhHhhHHHHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHH
Q psy312 18 IVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDM---AADLYDLE 81 (90)
Q Consensus 18 mVrAaesLLkLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrdel---~~~L~eLE 81 (90)
=+++-|+|+||+.=--+.==|+|-.++.. +..++..+|..|+.++ ...|.++|
T Consensus 34 e~~~regl~Km~~vY~~nP~~GD~~s~~~-----------~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 34 EVDQREALKKMKDVYEKTPQMGDPASLEP-----------QIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHTHHHHHHHHHHHCGGGCCGGGSHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778999999998888899999999833 4444555555555544 33445554
No 9
>3r84_B Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=44.16 E-value=34 Score=22.29 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=26.5
Q ss_pred HHHhHHHHHHhHhhHHHHHHHHHHHHHhcCh
Q psy312 11 MHVRAGNIVRAGESLLKLVSDIKQYLILNDF 41 (90)
Q Consensus 11 m~vRAa~mVrAaesLLkLvseLKq~LIL~DF 41 (90)
+.-.+.-++|.++-||-|+-.||+.-+||-.
T Consensus 61 vn~qt~qLIrgvQDLL~lTRsirEkWlL~QI 91 (92)
T 3r84_B 61 VNNQTMQLIKNVQDLLILTRSIKEKWLLNQI 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHBC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3466778899999999999999999998754
No 10
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=36.98 E-value=88 Score=20.54 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=21.0
Q ss_pred HHHHHHHHHhc-----ChhhHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q psy312 29 VSDIKQYLILN-----DFPSVNEAITQNSKLFRTKQTECDQKLMNLR 70 (90)
Q Consensus 29 vseLKq~LIL~-----DF~~lne~i~~~~~~~~~~~~~~d~~l~~lr 70 (90)
+.++|+++-+. +.+..-+.+..+...+.++..+..+.+..|.
T Consensus 62 L~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~ 108 (142)
T 3gp4_A 62 IEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLD 108 (142)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777776652 3333444444555555555554444444433
No 11
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=35.46 E-value=1.1e+02 Score=21.20 Aligned_cols=44 Identities=11% Similarity=0.028 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q psy312 29 VSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDM 73 (90)
Q Consensus 29 vseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrdel 73 (90)
+.++|++|-.. -..+.+.+..+...++++..+..+.+..|..-+
T Consensus 66 l~~i~~~~~~~-~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (278)
T 1r8e_A 66 LEEMKKAQDLE-MEELFAFYTEQERQIREKLDFLSALEQTISLVK 109 (278)
T ss_dssp HHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778776554 455666677777777777777766666555543
No 12
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=34.05 E-value=1e+02 Score=20.31 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=22.4
Q ss_pred HHHHHHHHHhc-----ChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q psy312 29 VSDIKQYLILN-----DFPSVNEAITQNSKLFRTKQTECDQKLMNLRD 71 (90)
Q Consensus 29 vseLKq~LIL~-----DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrd 71 (90)
+.++|.++-+. +.+.+.+.+..+...+.++..+..+.+..|..
T Consensus 76 L~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 123 (148)
T 3gpv_A 76 IQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQ 123 (148)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777652 23334444555555555555555544444433
No 13
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.50 E-value=84 Score=19.08 Aligned_cols=46 Identities=7% Similarity=0.156 Sum_probs=33.6
Q ss_pred HHhcChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy312 36 LILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEEEYY 85 (90)
Q Consensus 36 LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrdel~~~L~eLE~eYY 85 (90)
+|..|-+.+...+..+.+.+......+..++..+..++ .+++...|
T Consensus 58 fv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l----~~lk~~l~ 103 (107)
T 1fxk_A 58 LIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKL----QEMQVNIQ 103 (107)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 45567778888888888888888888888877666554 45555554
No 14
>1zvz_B Talin 1, metavinculin; complex, protein binding; 1.80A {Gallus gallus}
Probab=31.48 E-value=23 Score=17.74 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=8.9
Q ss_pred HHHHhHhhHH----HHHHHHH
Q psy312 17 NIVRAGESLL----KLVSDIK 33 (90)
Q Consensus 17 ~mVrAaesLL----kLvseLK 33 (90)
+|||.+..|- .||+.+|
T Consensus 2 ~mv~qak~laqat~~Li~~~K 22 (26)
T 1zvz_B 2 EMVRQARILAQATSDLVNAIK 22 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3555555554 3455555
No 15
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=30.03 E-value=27 Score=23.51 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=46.3
Q ss_pred HHHHhHhhHHHHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q psy312 17 NIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDM 73 (90)
Q Consensus 17 ~mVrAaesLLkLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrdel 73 (90)
+|.-.+|-+||+...|=..-|=.||.-.-.-+..-+...+....+||....++.+++
T Consensus 57 rik~~~E~~MK~LE~lDsl~i~e~~~~~R~kRK~lV~~iQ~~l~~cD~l~~~i~~~~ 113 (114)
T 1hx1_B 57 RVKATIEQFMKILEEIDTLILPENFKDSRLKRKGLVKKVQAFLAECDTVEQNICQET 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC-
T ss_pred HHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Confidence 466788999999999999999999976666677777888888889998888776553
No 16
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=28.99 E-value=1.6e+02 Score=21.09 Aligned_cols=30 Identities=13% Similarity=0.381 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy312 57 TKQTECDQKLMNLRDDMAADLYDLEEEYYT 86 (90)
Q Consensus 57 ~~~~~~d~~l~~lrdel~~~L~eLE~eYYs 86 (90)
...+++...+..|-.+....+.+||..|..
T Consensus 33 ~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~ 62 (225)
T 2e50_A 33 EHIDEVQNEIDRLNEQASEEILKVEQKYNK 62 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666677778888888999988864
No 17
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.67 E-value=87 Score=17.96 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=16.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q psy312 46 EAITQNSKLFRTKQTECDQKLMNLRDDMA 74 (90)
Q Consensus 46 e~i~~~~~~~~~~~~~~d~~l~~lrdel~ 74 (90)
.....++..+.....+...+|..|+.++.
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666665553
No 18
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=24.50 E-value=1.4e+02 Score=22.67 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=29.6
Q ss_pred HhHhhHHHHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHH
Q psy312 20 RAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRD----DMAADLYDLEEEY 84 (90)
Q Consensus 20 rAaesLLkLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrd----el~~~L~eLE~eY 84 (90)
+|+-.||.-++++=-+ ++++.. ..+.++.++...++..+-. |++..+..||+.|
T Consensus 215 ~AA~alL~~L~~~~gl----~vp~~~-------~~L~e~Ae~~e~~i~el~~~~~~E~~~~V~~LE~~y 272 (325)
T 3e35_A 215 DAALTVLEAITAATGL----VLPGIA-------HSLRTDAHRTQTEIDRQIQEGDEELIALVQGLEHQY 272 (325)
T ss_dssp HHHHHHHHHHHHHHCC----CCHHHH-------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC----CCCcch-------HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 4666666666654211 111222 2344444444444544443 5889999999887
No 19
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=24.47 E-value=1.2e+02 Score=21.24 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=17.5
Q ss_pred hHHHHHHhHhhHHHHHHHHHHH
Q psy312 14 RAGNIVRAGESLLKLVSDIKQY 35 (90)
Q Consensus 14 RAa~mVrAaesLLkLvseLKq~ 35 (90)
-+..++++++.+-+.|..|+.+
T Consensus 132 l~~~i~~~~~~l~~ai~~L~~~ 153 (227)
T 3l39_A 132 LSRLIHEEAINIGKAMDELETF 153 (227)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3667889999999988888764
No 20
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.09 E-value=1.4e+02 Score=18.30 Aligned_cols=46 Identities=4% Similarity=0.152 Sum_probs=33.4
Q ss_pred HHhcChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy312 36 LILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEEEYY 85 (90)
Q Consensus 36 LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrdel~~~L~eLE~eYY 85 (90)
+|..|...+...+..+.+.+......+..++..+..++ .+++.++|
T Consensus 63 fv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l----~~lk~~l~ 108 (117)
T 2zqm_A 63 IVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKL----KELTAQIQ 108 (117)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 34557788888888888888888888888877666554 45555555
No 21
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=22.85 E-value=1.4e+02 Score=21.34 Aligned_cols=32 Identities=44% Similarity=0.659 Sum_probs=21.4
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHhcChhhHHHHHHH
Q psy312 16 GNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQ 50 (90)
Q Consensus 16 a~mVrAaesLLkLvseLKq~LIL~DF~~lne~i~~ 50 (90)
+.||+||-+||.=|+. .|||-|-.-+-.-+..
T Consensus 66 ~~lV~aaR~lLs~vtr---lLllaD~~~Vrkil~~ 97 (205)
T 1dow_A 66 GNMVRAARALLSAVTR---LLILADMADVYKLLVQ 97 (205)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4578999998887765 4666666555444443
No 22
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=22.15 E-value=1.6e+02 Score=18.81 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHH
Q psy312 23 ESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQ--TECDQKLMNLRDDMAADLYDLE 81 (90)
Q Consensus 23 esLLkLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~--~~~d~~l~~lrdel~~~L~eLE 81 (90)
+.|..++|.||-..-..+.+.|.+.-..=...+++.. ++....+..|.+++..-+.++.
T Consensus 59 ~~l~~~aHkLkGaa~~~Ga~~L~~~c~~LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~ 119 (123)
T 3iqt_A 59 EGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREAS 119 (123)
T ss_dssp TTHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999877665555554432 2556677777777777666554
No 23
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.04 E-value=1.5e+02 Score=18.52 Aligned_cols=28 Identities=7% Similarity=0.178 Sum_probs=16.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q psy312 47 AITQNSKLFRTKQTECDQKLMNLRDDMA 74 (90)
Q Consensus 47 ~i~~~~~~~~~~~~~~d~~l~~lrdel~ 74 (90)
.+..+...+++.+..+..++..|..|+.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666655554
No 24
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=21.86 E-value=1.5e+02 Score=18.26 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHhcChhh
Q psy312 24 SLLKLVSDIKQYLILNDFPS 43 (90)
Q Consensus 24 sLLkLvseLKq~LIL~DF~~ 43 (90)
.||++|+++|==+|+++.+.
T Consensus 20 eLLSlvheIKID~It~n~~k 39 (69)
T 1skv_A 20 ELLSLIHEIKIDRITGNMDK 39 (69)
T ss_dssp HHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHheeeeccCCCH
Confidence 69999999999999998864
No 25
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=21.77 E-value=2.5e+02 Score=20.77 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=31.8
Q ss_pred HhhHHHHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy312 22 GESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLM 67 (90)
Q Consensus 22 aesLLkLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~ 67 (90)
.|-|.+++..+-. --|..||.|.+++...+..+..++..--.+..
T Consensus 112 ~e~l~~~~~~i~~-~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I 156 (271)
T 3ljb_A 112 TDMVRLAFTDVSI-KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLI 156 (271)
T ss_dssp HHHHHHHHHHHHH-HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544 47999999999999999888877665544433
No 26
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=21.67 E-value=1.9e+02 Score=19.52 Aligned_cols=25 Identities=12% Similarity=0.494 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcChhhHHHHHHHhHHHH
Q psy312 29 VSDIKQYLILNDFPSVNEAITQNSKLF 55 (90)
Q Consensus 29 vseLKq~LIL~DF~~lne~i~~~~~~~ 55 (90)
|.-|+.++ ++|+.+...|..|....
T Consensus 118 i~Pl~~~~--~~~~~i~~~ikKR~~k~ 142 (244)
T 1uru_A 118 LIPLNTYT--GQFPEMKKKVEKRNRKL 142 (244)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 45566665 78999998888866543
No 27
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=21.31 E-value=2e+02 Score=19.54 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=35.5
Q ss_pred HHhHHHHHHhHhhHHHHHHHHHHHHHhcChhhHH-HHHHHhHHHHHHHHHHHHHHHHhHHH
Q psy312 12 HVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVN-EAITQNSKLFRTKQTECDQKLMNLRD 71 (90)
Q Consensus 12 ~vRAa~mVrAaesLLkLvseLKq~LIL~DF~~ln-e~i~~~~~~~~~~~~~~d~~l~~lrd 71 (90)
.-=+..++++++.+.+.+.+++.++ -++|..-+ ..+..-..+......++|.....++.
T Consensus 123 ~~~~~~~~~~~~~~~~ai~~l~~l~-e~~~~~~~~~~~~~~~~~i~~lE~~~D~l~~~~~~ 182 (227)
T 2olt_A 123 IAYLQRCIDAVGLAQQVINELDDLL-EAGFRGREVDFVAKMINELDIIEEDTDDLQIQLRR 182 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677899999999999996554 56776222 23444444445555555555554444
No 28
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.07 E-value=1.6e+02 Score=18.02 Aligned_cols=29 Identities=7% Similarity=0.140 Sum_probs=19.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q psy312 46 EAITQNSKLFRTKQTECDQKLMNLRDDMA 74 (90)
Q Consensus 46 e~i~~~~~~~~~~~~~~d~~l~~lrdel~ 74 (90)
..+..+...+...+..+..++..|..|+.
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777766654
No 29
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=20.04 E-value=1.8e+02 Score=18.41 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=24.0
Q ss_pred HHHhHhhHHHHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q psy312 18 IVRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMA 74 (90)
Q Consensus 18 mVrAaesLLkLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrdel~ 74 (90)
|=..||.|++-+++ ..............++++|..|.+|+.
T Consensus 40 iKeGaENL~katt~----------------~kk~~~~V~~eL~~sn~kl~~L~~eL~ 80 (86)
T 1cxz_B 40 LKEGAENLRRATTD----------------LGRSLGPVELLLRGSSRRLDLLHQQLQ 80 (86)
T ss_dssp HHHHHHHHHHHHHH----------------HTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777766 222334555556666677776666543
Done!