Query psy312
Match_columns 90
No_of_seqs 61 out of 63
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 16:56:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy312.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/312hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p90a1 c.56.8.1 (A:6-274) Hyp 61.2 7.8 0.00057 26.2 5.3 56 19-84 206-261 (269)
2 d1dova_ a.24.9.1 (A:) alpha-ca 29.1 69 0.005 20.7 6.9 33 16-51 41-73 (181)
3 d2qy9a1 a.24.13.1 (A:201-284) 28.1 40 0.0029 18.8 3.9 54 28-81 27-83 (84)
4 d2bgwa1 a.60.2.5 (A:160-229) D 26.0 30 0.0022 18.7 3.0 24 30-54 8-31 (70)
5 d2ayua1 d.305.1.1 (A:70-370) N 24.8 69 0.005 22.2 5.4 41 42-86 17-57 (301)
6 d1xzpa1 a.24.25.1 (A:118-211,A 24.8 56 0.0041 20.1 4.6 20 62-81 32-51 (173)
7 d1iiea_ a.109.1.1 (A:) Class I 23.7 9.3 0.00068 22.6 0.3 35 32-66 9-47 (75)
8 d1fi4a2 d.58.26.2 (A:191-393) 20.8 88 0.0064 20.9 5.1 36 27-62 42-77 (203)
9 d1q06a_ a.6.1.3 (A:) Transcrip 19.8 82 0.006 18.3 5.4 36 29-64 60-100 (127)
10 d2d0ta1 a.266.1.2 (A:12-403) I 19.0 33 0.0024 24.8 2.7 22 10-31 158-179 (392)
No 1
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=61.20 E-value=7.8 Score=26.23 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=33.3
Q ss_pred HHhHhhHHHHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy312 19 VRAGESLLKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEEEY 84 (90)
Q Consensus 19 VrAaesLLkLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~~d~~l~~lrdel~~~L~eLE~eY 84 (90)
-+||-.||+-++++=-+ =+ |...|.+.-.+-.+++++..++ -+|++..+..||++|
T Consensus 206 P~AA~~lL~~l~~~~gl-~i-d~~~L~e~Ae~~e~~i~~l~e~--------~~e~~~~v~~LE~~y 261 (269)
T d2p90a1 206 PAATLKLLQSIADSADL-NL-PLLALERDAEKVHRQLMEQTEE--------SSEIQRVVGALEQQY 261 (269)
T ss_dssp HHHHHHHHHHHHHHHTC-CC-CCHHHHHHHHHHHHHHHHHHHH--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-CC-ChHHHHHHHHHHHHHHHHHHhh--------CHHHHHHHHHHHHhH
Confidence 36777888877775321 11 5555555444444333333322 257888899999888
No 2
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.06 E-value=69 Score=20.69 Aligned_cols=33 Identities=42% Similarity=0.609 Sum_probs=21.7
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHhcChhhHHHHHHHh
Q psy312 16 GNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQN 51 (90)
Q Consensus 16 a~mVrAaesLLkLvseLKq~LIL~DF~~lne~i~~~ 51 (90)
+.||+||-.||.=|+. .|||-|-.-+-.-+...
T Consensus 41 ~~lv~aaR~lLs~vt~---lLllaD~~~Vr~il~~~ 73 (181)
T d1dova_ 41 GNMVRAARALLSAVTR---LLILADMADVYKLLVQL 73 (181)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4678888888876654 47777766655444433
No 3
>d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor, FtsY {Escherichia coli [TaxId: 562]}
Probab=28.07 E-value=40 Score=18.79 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCh-hhHHHHHHHhHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHH
Q psy312 28 LVSDIKQYLILNDF-PSVNEAITQNSKLFRTKQ--TECDQKLMNLRDDMAADLYDLE 81 (90)
Q Consensus 28 LvseLKq~LIL~DF-~~lne~i~~~~~~~~~~~--~~~d~~l~~lrdel~~~L~eLE 81 (90)
...||-..||.+|+ +..++.|-...+.-.... ...+.-...|++++...|.+.|
T Consensus 27 ~leeLEe~LI~aDvG~~tt~~ii~~lk~~~~~~~~~~~~~l~~~L~~~i~~iL~~~e 83 (84)
T d2qy9a1 27 LFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVD 83 (84)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCBGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhchhc
Confidence 46789999999999 345555554444322221 2344556677888888776654
No 4
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=26.01 E-value=30 Score=18.72 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=16.8
Q ss_pred HHHHHHHHhcChhhHHHHHHHhHHH
Q psy312 30 SDIKQYLILNDFPSVNEAITQNSKL 54 (90)
Q Consensus 30 seLKq~LIL~DF~~lne~i~~~~~~ 54 (90)
.+++.+ +|.+.|.|......+.-.
T Consensus 8 ~~~~~~-~L~~IpgIG~~~a~~L~~ 31 (70)
T d2bgwa1 8 REWQLY-ILQSFPGIGRRTAERILE 31 (70)
T ss_dssp HHHHHH-HHHTSTTCCHHHHHHHHH
T ss_pred HHHHHH-HHcCCCCcCHHHHHHHHH
Confidence 445555 688899998887776544
No 5
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.77 E-value=69 Score=22.17 Aligned_cols=41 Identities=12% Similarity=0.349 Sum_probs=31.4
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy312 42 PSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEEEYYT 86 (90)
Q Consensus 42 ~~lne~i~~~~~~~~~~~~~~d~~l~~lrdel~~~L~eLE~eYYs 86 (90)
.+|...|.+|+..++..+.+++ .|..+....+++||..|..
T Consensus 17 ~~Lp~~v~~rv~aLk~lq~e~~----~le~~f~~e~~~LE~ky~~ 57 (301)
T d2ayua1 17 GGLPKNVKEKLLSLKTLQSELF----EVEKEFQVEMFELENKFLQ 57 (301)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 5778888888888776665554 5666788888999999874
No 6
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}
Probab=24.77 E-value=56 Score=20.09 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=8.5
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q psy312 62 CDQKLMNLRDDMAADLYDLE 81 (90)
Q Consensus 62 ~d~~l~~lrdel~~~L~eLE 81 (90)
..+++..||+++-..+..+|
T Consensus 32 ls~~i~~ir~~L~~l~a~iE 51 (173)
T d1xzpa1 32 LRDFVDSLRRELIEVLAEIR 51 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 7
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.69 E-value=9.3 Score=22.63 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=30.8
Q ss_pred HHHHHHhcC----hhhHHHHHHHhHHHHHHHHHHHHHHH
Q psy312 32 IKQYLILND----FPSVNEAITQNSKLFRTKQTECDQKL 66 (90)
Q Consensus 32 LKq~LIL~D----F~~lne~i~~~~~~~~~~~~~~d~~l 66 (90)
+|-.|.=+| ||.+|+..-.+.+.+.+..++.+.+.
T Consensus 9 Vk~LL~~~~P~k~~P~ln~sf~~NLk~LK~~M~~~dWk~ 47 (75)
T d1iiea_ 9 VMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV 47 (75)
T ss_dssp HHHHHHHHCTTCCCCCCCSCHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHhccChhhhchhhHHHHHHHHHHHHHhcchhhHHH
Confidence 566677788 99999999999999999999998874
No 8
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.78 E-value=88 Score=20.85 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHhHHHHHHHHHHH
Q psy312 27 KLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTEC 62 (90)
Q Consensus 27 kLvseLKq~LIL~DF~~lne~i~~~~~~~~~~~~~~ 62 (90)
+-+.++|+.+.=.||..+.+-.......|+..+..+
T Consensus 42 ~r~~~m~~AI~~rDF~~f~eite~ds~~mHA~~l~s 77 (203)
T d1fi4a2 42 KRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDS 77 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHHHhcC
Confidence 457889999999999999999999999999887654
No 9
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=19.82 E-value=82 Score=18.28 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcChh-----hHHHHHHHhHHHHHHHHHHHHH
Q psy312 29 VSDIKQYLILNDFP-----SVNEAITQNSKLFRTKQTECDQ 64 (90)
Q Consensus 29 vseLKq~LIL~DF~-----~lne~i~~~~~~~~~~~~~~d~ 64 (90)
++++|+++-+.|.+ ...+.+..+...++++......
T Consensus 60 l~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~ 100 (127)
T d1q06a_ 60 LEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQS 100 (127)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788877654432 2344444444444444443333
No 10
>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.99 E-value=33 Score=24.82 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=15.1
Q ss_pred HHHHhHHHHHHhHhhHHHHHHH
Q psy312 10 EMHVRAGNIVRAGESLLKLVSD 31 (90)
Q Consensus 10 em~vRAa~mVrAaesLLkLvse 31 (90)
.|+.+++.++.+.-..++.+..
T Consensus 158 ~iE~~~~~~l~~~~~~~~a~~~ 179 (392)
T d2d0ta1 158 LVEIAAASAIKVIPTVFKAMQM 179 (392)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHhhhhHHHHHHHHHHHHHc
Confidence 5677777777777666666544
Done!