RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy312
(90 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.28
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 23 ESLLKLVSDIKQYLILNDFPSVNEAITQNSKL 54
++L KL + +K Y A+ + +
Sbjct: 20 QALKKLQASLKLYA-----DDSAPALAIKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 0.95
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 18/49 (36%)
Query: 5 EL-DLYEM---HVRAGNIVRAGESLLKLVS-------------DIKQYL 36
EL DLY+ V I + E+L +L+ +I ++L
Sbjct: 172 ELRDLYQTYHVLVGD-LIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 1.5
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 14/87 (16%)
Query: 6 LDL--YEMHVRA-GNIVRAGESLLKLVSDIKQYL--ILNDFPSVNEAI--------TQNS 52
LD E +R A S+L + +K Y I ++ P +
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 53 KLFRTKQTECDQ-KLMNLRDDMAADLY 78
L +K T+ + LM + + + +
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAH 584
>4ew8_A Sensor protein DIVL; signal transduction, two-component
regulatory system, hiska GHKL domain, structural
genomics; 2.50A {Caulobacter crescentus}
Length = 268
Score = 26.0 bits (58), Expect = 1.6
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 15 AGNIVRAGESLLKLVSDI 32
+ A L + + D+
Sbjct: 79 VAAVRAAATQLARSIDDV 96
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; oxidoreductase, multienzyme
complex; HET: TPW; 2.35A {Bacillus stearothermophilus}
PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 25.7 bits (57), Expect = 2.0
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 5 ELDLYEMHVRAGNIVRAGESLLKLVSD 31
E ++ + V+ G+ V + L ++ +D
Sbjct: 16 EGEIVKWFVKPGDEVNEDDVLCEVQND 42
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase,
chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens}
SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A
2j0f_A
Length = 474
Score = 25.0 bits (55), Expect = 4.0
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 10 EMHVRAGNIVRAGESLLKL 28
E+ V G +R G L++
Sbjct: 414 ELLVDVGQRLRRGTPWLRV 432
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase;
pyrimidine-nucleoside phosphorylase, structural
genomics; 1.80A {Thermus thermophilus}
Length = 423
Score = 25.0 bits (55), Expect = 4.4
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 10 EMHVRAGNIVRAGESLLKLVSD 31
+ + G+ V GE+L +
Sbjct: 371 YLLKKPGDRVERGEALALVYHR 392
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics,
glycosyltransferase, transferase; HET: MSE THM; 1.94A
{Staphylococcus aureus}
Length = 436
Score = 24.9 bits (55), Expect = 4.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 10 EMHVRAGNIVRAGESLLKLVSD 31
++ + G+ V GESLL + S+
Sbjct: 382 VLNKKIGDKVEEGESLLTIHSN 403
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain
movement, transferase; HET: MES; 2.10A {Geobacillus
stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Length = 433
Score = 25.0 bits (55), Expect = 4.5
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 10 EMHVRAGNIVRAGESLLKLVSD 31
+H + G+ V+ GE+L + S+
Sbjct: 379 VLHKKIGDRVQKGEALATIHSN 400
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane,
phosphoprotein, nucleotide-binding, alternative
splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Length = 428
Score = 24.7 bits (53), Expect = 5.0
Identities = 6/45 (13%), Positives = 17/45 (37%)
Query: 7 DLYEMHVRAGNIVRAGESLLKLVSDIKQYLILNDFPSVNEAITQN 51
+ +HV+ G++ A + + + + +YL +
Sbjct: 16 SMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRV 60
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A
{Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB:
1azy_A 1tpt_A 1otp_A
Length = 440
Score = 24.6 bits (54), Expect = 5.8
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 10 EMHVRAGNIVRAGESLLKL 28
R G+ V L +
Sbjct: 384 TDMARLGDQVDGQRPLAVI 402
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA;
2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Length = 154
Score = 24.1 bits (53), Expect = 7.6
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 9 YEMHVRAGNIVRAGESLLK 27
+E V V AG+ L+
Sbjct: 91 FESFVTQDQEVNAGDKLVT 109
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system,
sugar transport, transferase, phosphorylation,
transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1
PDB: 1gpr_A
Length = 162
Score = 23.8 bits (52), Expect = 8.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 9 YEMHVRAGNIVRAGESLLK 27
+ V G+ V G+ LL+
Sbjct: 96 FTSFVSEGDRVEPGQKLLE 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.368
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,297,152
Number of extensions: 58089
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 24
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)