RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy312
         (90 letters)



>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide
           transformylase PurT, domain 2 {Escherichia coli [TaxId:
           562]}
          Length = 206

 Score = 24.7 bits (52), Expect = 1.6
 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query: 4   CELDLYEMHVRAGNIVRAGESLLKLVSDIKQY 35
            +L  + +HVRA      G  +      I+QY
Sbjct: 183 QDLSEFALHVRAF----LGLPV----GGIRQY 206


>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 103

 Score = 23.9 bits (52), Expect = 2.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 9  YEMHVRAGNIVRAGESLLKLVSD 31
            +H + G+ V+ GE+L  + S+
Sbjct: 48 IVLHKKIGDRVQKGEALATIHSN 70


>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia
          coli [TaxId: 562]}
          Length = 105

 Score = 23.2 bits (50), Expect = 4.2
 Identities = 4/20 (20%), Positives = 7/20 (35%)

Query: 9  YEMHVRAGNIVRAGESLLKL 28
          +    R G+ V     L  +
Sbjct: 48 FTDMARLGDQVDGQRPLAVI 67


>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 237

 Score = 23.5 bits (49), Expect = 5.3
 Identities = 5/26 (19%), Positives = 13/26 (50%)

Query: 10 EMHVRAGNIVRAGESLLKLVSDIKQY 35
          +   + G+ V+AG+ L ++     + 
Sbjct: 28 KRLFKEGSDVKAGQQLYQIDPATYEA 53


>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 105

 Score = 22.8 bits (49), Expect = 6.1
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 9  YEMHVRAGNIVRAGESLLKLVSD 31
           E+ V  G  +R G   L++  D
Sbjct: 46 AELLVDVGQRLRRGTPWLRVHRD 68


>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 257

 Score = 23.2 bits (50), Expect = 6.5
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 28  LVSDIKQYLILNDFPSVNEAITQNSKLFRTKQTECDQKLMNLRDDMAADLYDLEEE 83
           L SDI++++ +   P+V  A       FR  +       ++ R  +A  L    E 
Sbjct: 78  LTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFI--TIHDRGHIATMLQSWPES 131


>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Human (Homo sapiens) [TaxId: 9606]}
          Length = 259

 Score = 23.2 bits (50), Expect = 6.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 28  LVSDIKQYLILNDFPSVNEAITQNSKLFRTKQ 59
           L  DI+  + +   P+V  A +Q   +FR  +
Sbjct: 80  LQDDIESLMPIVYTPTVGLACSQYGHIFRRPK 111


>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic
           enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
          Length = 294

 Score = 22.8 bits (49), Expect = 8.6
 Identities = 5/32 (15%), Positives = 14/32 (43%)

Query: 28  LVSDIKQYLILNDFPSVNEAITQNSKLFRTKQ 59
           +   +K+ + +   P+V  A      ++R  +
Sbjct: 113 VCDHVKELMPIVYTPTVGLACQNFGYIYRKPK 144


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 308,350
Number of extensions: 10849
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 10
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)