BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3120
(711 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86B79|UNK_DROME RING finger protein unkempt OS=Drosophila melanogaster GN=unk PE=1
SV=1
Length = 599
Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust.
Identities = 234/289 (80%), Positives = 255/289 (88%), Gaps = 2/289 (0%)
Query: 157 FMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKY 216
+ YLKEFRVEQC FLQHKC QHRPF CF+WHF NQRRRRPVRKRDG+FNYS D YCTKY
Sbjct: 21 YTYLKEFRVEQCQSFLQHKCNQHRPFVCFNWHFQNQRRRRPVRKRDGTFNYSADNYCTKY 80
Query: 217 DETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGN 276
DETTG+CP+GDECP+LHRTAGDTERRYHLRYYKTCMCVHDTD+RG CVKNG HCAFAHG
Sbjct: 81 DETTGICPEGDECPYLHRTAGDTERRYHLRYYKTCMCVHDTDSRGYCVKNGLHCAFAHGM 140
Query: 277 PDLRPPVYDIKEIQALENPEGDPNSNSNGPNALDKEGKLLTEDPKWQDTNYVLSNYKTEQ 336
D RPPVYDIKE++ L+N E +S +N NALDKE L+ EDPKWQDTNYVL+NYKTE
Sbjct: 141 QDQRPPVYDIKELETLQNAESTLDS-TNALNALDKERNLMNEDPKWQDTNYVLANYKTEP 199
Query: 337 CKRPPRLCRQGYACPQFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQY 396
CKRPPRLCRQGYACPQ+HNS+DKRRSPR +KYRSTPCPNVKHG+EWGEP NCE+GD CQY
Sbjct: 200 CKRPPRLCRQGYACPQYHNSKDKRRSPRKYKYRSTPCPNVKHGEEWGEPGNCEAGDNCQY 259
Query: 397 CHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVD-TEMANARE 444
CHTRTEQQFHPEIYKSTKCNDVQQAGYCPR VFCAFAHV+ M + RE
Sbjct: 260 CHTRTEQQFHPEIYKSTKCNDVQQAGYCPRSVFCAFAHVEPCSMDDPRE 308
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 32/41 (78%)
Query: 28 ADLNSMSISALKCIQSQLRGDLEKVDKILYLQTATKCMVCE 68
A+L +SI LK +QS+LR DLE+VDK+LYL+ A KCM CE
Sbjct: 520 AELRDLSIQKLKQLQSKLRTDLEEVDKVLYLENAKKCMKCE 560
>sp|Q8BL48|UNK_MOUSE RING finger protein unkempt homolog OS=Mus musculus GN=Unk PE=1
SV=1
Length = 810
Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust.
Identities = 209/287 (72%), Positives = 241/287 (83%), Gaps = 7/287 (2%)
Query: 157 FMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKY 216
+ YLKEFR EQCPLF+QHKCTQHRP+TCFHWHF+NQRRRR +R+RDG+FNYSPD YCTKY
Sbjct: 34 YTYLKEFRTEQCPLFVQHKCTQHRPYTCFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTKY 93
Query: 217 DETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGN 276
DE TGLCP+GDECPFLHRT GDTERRYHLRYYKT +C+H+TD++G C KNG HCAFAHG
Sbjct: 94 DEATGLCPEGDECPFLHRTTGDTERRYHLRYYKTGICIHETDSKGNCTKNGLHCAFAHGP 153
Query: 277 PDLRPPVYDIKEIQALE-------NPEGDPNSNSNGPNALDKEGKLLTEDPKWQDTNYVL 329
DLR PVYDI+E+QA+E EG S G + K+L+E+P+WQ+T YVL
Sbjct: 154 HDLRSPVYDIRELQAMEALQNGQTTVEGSIEGQSAGAASHAMIEKILSEEPRWQETAYVL 213
Query: 330 SNYKTEQCKRPPRLCRQGYACPQFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCE 389
NYKTE CK+PPRLCRQGYACP +HNS+D+RRSPR KYRS+PCPNVKHGDEWG+P CE
Sbjct: 214 GNYKTEPCKKPPRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCE 273
Query: 390 SGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVD 436
+GD CQYCHTRTEQQFHPEIYKSTKCND+QQAG CPRG FCAFAH++
Sbjct: 274 NGDACQYCHTRTEQQFHPEIYKSTKCNDMQQAGSCPRGPFCAFAHIE 320
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 4 QVKQYEKEISRLSGTPSIVCLSSNADLNSMSISALKCIQSQLRGDLEKVDKILYLQTATK 63
+VK+ ++E+ RL P L + DL ++S+S L IQ QLR LE+VDK ++ + K
Sbjct: 709 RVKKLQEELERLHTVPEAQTLPAAPDLEALSLSTLYSIQKQLRVHLEQVDKAVFHMQSVK 768
Query: 64 CMVCE 68
C+ C+
Sbjct: 769 CLKCQ 773
>sp|Q9C0B0|UNK_HUMAN RING finger protein unkempt homolog OS=Homo sapiens GN=UNK PE=1
SV=2
Length = 810
Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust.
Identities = 209/287 (72%), Positives = 241/287 (83%), Gaps = 7/287 (2%)
Query: 157 FMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKY 216
+ YLKEFR EQCPLF+QHKCTQHRP+TCFHWHF+NQRRRR +R+RDG+FNYSPD YCTKY
Sbjct: 34 YTYLKEFRTEQCPLFVQHKCTQHRPYTCFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTKY 93
Query: 217 DETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGN 276
DE TGLCP+GDECPFLHRT GDTERRYHLRYYKT +C+H+TD++G C KNG HCAFAHG
Sbjct: 94 DEATGLCPEGDECPFLHRTTGDTERRYHLRYYKTGICIHETDSKGNCTKNGLHCAFAHGP 153
Query: 277 PDLRPPVYDIKEIQALE-------NPEGDPNSNSNGPNALDKEGKLLTEDPKWQDTNYVL 329
DLR PVYDI+E+QA+E EG S G + K+L+E+P+WQ+T YVL
Sbjct: 154 HDLRSPVYDIRELQAMEALQNGQTTVEGSIEGQSAGAASHAMIEKILSEEPRWQETAYVL 213
Query: 330 SNYKTEQCKRPPRLCRQGYACPQFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCE 389
NYKTE CK+PPRLCRQGYACP +HNS+D+RRSPR KYRS+PCPNVKHGDEWG+P CE
Sbjct: 214 GNYKTEPCKKPPRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCE 273
Query: 390 SGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVD 436
+GD CQYCHTRTEQQFHPEIYKSTKCND+QQ+G CPRG FCAFAHV+
Sbjct: 274 NGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVE 320
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 4 QVKQYEKEISRLSGTPSIVCLSSNADLNSMSISALKCIQSQLRGDLEKVDKILYLQTATK 63
QVK+ ++E+ RL P L + +DL ++S+S L +Q QLR LE+VDK ++ + K
Sbjct: 709 QVKKLQEELERLHAGPEPQALPAFSDLEALSLSTLYSLQKQLRAHLEQVDKAVFHMQSVK 768
Query: 64 CMVCEFVRK 72
C+ C+ ++
Sbjct: 769 CLKCQEQKR 777
>sp|Q6EE22|UNK_CANFA RING finger protein unkempt homolog OS=Canis familiaris GN=UNK PE=2
SV=1
Length = 810
Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust.
Identities = 208/287 (72%), Positives = 241/287 (83%), Gaps = 7/287 (2%)
Query: 157 FMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKY 216
+ YLKEFR EQCPLF+QHKCTQHRP+TCFHWHF+NQRRRR +R+RDG+FNYSPD YCTKY
Sbjct: 34 YTYLKEFRTEQCPLFVQHKCTQHRPYTCFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTKY 93
Query: 217 DETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGN 276
DE TGLCP+GDECPFLHRT GDTERRYHLRYYKT +C+H+TD++G C KNG HCAFAHG
Sbjct: 94 DEATGLCPEGDECPFLHRTTGDTERRYHLRYYKTGICIHETDSKGNCTKNGLHCAFAHGP 153
Query: 277 PDLRPPVYDIKEIQALE-------NPEGDPNSNSNGPNALDKEGKLLTEDPKWQDTNYVL 329
DLR PVYDI+E+QA+E EG + G + K+L+E+P+WQ+T YVL
Sbjct: 154 HDLRSPVYDIRELQAMEALQNGQTTVEGSIEGQTAGAASHAMIEKILSEEPRWQETAYVL 213
Query: 330 SNYKTEQCKRPPRLCRQGYACPQFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCE 389
NYKTE CK+PPRLCRQGYACP +HNS+D+RRSPR KYRS+PCPNVKHGDEWG+P CE
Sbjct: 214 GNYKTEPCKKPPRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCE 273
Query: 390 SGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVD 436
+GD CQYCHTRTEQQFHPEIYKSTKCND+QQ+G CPRG FCAFAHV+
Sbjct: 274 NGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVE 320
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 4 QVKQYEKEISRLSGTPSIVCLSSNADLNSMSISALKCIQSQLRGDLEKVDKILYLQTATK 63
QVK+ ++E+ RL P L + +DL ++S+S L +Q QLR LE+VDK ++ + K
Sbjct: 709 QVKKLQEELERLHSGPDPQALPTFSDLEALSLSTLYSLQKQLRAHLEQVDKAVFHMQSVK 768
Query: 64 CMVCE 68
C+ C+
Sbjct: 769 CLKCQ 773
>sp|Q5FWH2|UNKL_MOUSE Putative E3 ubiquitin-protein ligase UNKL OS=Mus musculus GN=Unkl
PE=2 SV=2
Length = 727
Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/298 (70%), Positives = 246/298 (82%), Gaps = 8/298 (2%)
Query: 157 FMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKY 216
+ YLKEFR EQC LFLQHKC+QHRPFTCFHWHF+NQRRRRP+R+RDG+FNYSPD YC+KY
Sbjct: 25 YRYLKEFRTEQCSLFLQHKCSQHRPFTCFHWHFLNQRRRRPLRRRDGTFNYSPDIYCSKY 84
Query: 217 DETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGN 276
DE TGLCPDGDECP+LHRT GDTER+YHLRYYKT C+H+TDARG CVKNG HCAFAHG
Sbjct: 85 DEATGLCPDGDECPYLHRTTGDTERKYHLRYYKTGTCIHETDARGHCVKNGLHCAFAHGP 144
Query: 277 PDLRPPVYDIKEIQALENPEGDPNSNSNG-----PNALDKEG---KLLTEDPKWQDTNYV 328
DLRPPV DI+E+QA E + S +G P L + K+L EDP+WQD+N+V
Sbjct: 145 LDLRPPVCDIRELQAQEALQNGQLSGGDGVPDLQPGVLASQAMIEKILGEDPRWQDSNFV 204
Query: 329 LSNYKTEQCKRPPRLCRQGYACPQFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANC 388
L +YKTEQC +PPRLCRQGYACP +HNSRD+RR+PR F+YRSTPCP+VKHGDEWGEP+ C
Sbjct: 205 LGSYKTEQCPKPPRLCRQGYACPHYHNSRDRRRNPRRFQYRSTPCPSVKHGDEWGEPSRC 264
Query: 389 ESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANAREMA 446
+ GD CQYCH+RTEQQFHPEIYKSTKCND++Q GYCPRG FCAFAH + +A E +
Sbjct: 265 DGGDSCQYCHSRTEQQFHPEIYKSTKCNDMRQTGYCPRGPFCAFAHTEKSLAMVNEWS 322
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 4 QVKQYEKEISRLSGTPSIVCLSSNADLNSMSISALKCIQSQLRGDLEKVDKILYLQTATK 63
+VKQ ++E+ L G S+ L S D++ + + L +QS+LR DLE VD +++ A +
Sbjct: 627 KVKQLQEELEGL-GLSSLPGLQSLGDISDIPLPKLHSLQSKLRLDLEAVDGVIFQLRAKQ 685
Query: 64 CMVCE 68
C+ C+
Sbjct: 686 CVACQ 690
>sp|Q9H9P5|UNKL_HUMAN Putative E3 ubiquitin-protein ligase UNKL OS=Homo sapiens GN=UNKL
PE=1 SV=3
Length = 680
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/301 (68%), Positives = 241/301 (80%), Gaps = 17/301 (5%)
Query: 157 FMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKY 216
+ YLKEFR EQCPLF QHKC QHRPFTCFHWHF+NQRRRRP+R+RDG+FNYSPD YC+KY
Sbjct: 25 YRYLKEFRTEQCPLFSQHKCAQHRPFTCFHWHFLNQRRRRPLRRRDGTFNYSPDVYCSKY 84
Query: 217 DETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGN 276
+E TG+CPDGDECP+LHRT GDTER+YHLRYYKT C+H+TDARG CVKNG HCAFAHG
Sbjct: 85 NEATGVCPDGDECPYLHRTTGDTERKYHLRYYKTGTCIHETDARGHCVKNGLHCAFAHGP 144
Query: 277 PDLRPPVYDIKEIQALE--------NPEGDPNSNSNGPNALDKEG---KLLTEDPKWQDT 325
DLRPPV D++E+QA E EG P+ P L + K+L+EDP+WQD
Sbjct: 145 LDLRPPVCDVRELQAQEALQNGQLGGGEGVPDLQ---PGVLASQAMIEKILSEDPRWQDA 201
Query: 326 NYVLSNYKTEQCKRPPRLCRQGYACPQFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEP 385
N+VL +YKTEQC +PPRLCRQGYACP +HNSRD+RR+PR F+YRSTPCP+VKHGDEWGEP
Sbjct: 202 NFVLGSYKTEQCPKPPRLCRQGYACPHYHNSRDRRRNPRRFQYRSTPCPSVKHGDEWGEP 261
Query: 386 ANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANAREM 445
+ C+ GD CQYCH+RTEQQFHPE STKCND++Q GYCPRG FCAFAHV+ + E
Sbjct: 262 SRCDGGDGCQYCHSRTEQQFHPE---STKCNDMRQTGYCPRGPFCAFAHVEKSLGMVNEW 318
Query: 446 A 446
Sbjct: 319 G 319
>sp|Q9LXV4|C3H56_ARATH Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis
thaliana GN=At5g12850 PE=2 SV=1
Length = 706
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 66/145 (45%), Gaps = 28/145 (19%)
Query: 342 RLCRQGYA-----CPQFHNSRD-KRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQ 395
R C + Y+ CP H + +RR PR F Y PCP+ K G +C+ GD+C+
Sbjct: 266 RPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPDFKKG-------SCKQGDMCE 318
Query: 396 YCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANAREMAGGLGPLDGT 455
Y H E HP Y++ C D C R V C FAH + E L PL +
Sbjct: 319 YAHGVFECWLHPAQYRTRLCKD---GMGCNRRV-CFFAHANEE----------LRPLYPS 364
Query: 456 PGSGL-SDILAGGLPNSNLDEALLL 479
GSGL S + + S +D A +L
Sbjct: 365 TGSGLPSPRASSAVSASTMDMASVL 389
Score = 39.7 bits (91), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 49/130 (37%), Gaps = 21/130 (16%)
Query: 152 IFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDT 211
I+ + F++ C H T+ C H RRR RK F+Y T
Sbjct: 252 IYSTDEFRMFSFKIRPCSRAYSHDWTE-----CPFAHPGENARRRDPRK----FHY---T 299
Query: 212 YCTKYDETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCA 271
D G C GD C + H G E H Y+T +C D G N C
Sbjct: 300 CVPCPDFKKGSCKQGDMCEYAH---GVFECWLHPAQYRTRLC---KDGMGC---NRRVCF 350
Query: 272 FAHGNPDLRP 281
FAH N +LRP
Sbjct: 351 FAHANEELRP 360
>sp|Q2QPW2|C3H67_ORYSJ Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa
subsp. japonica GN=Os12g0515500 PE=2 SV=1
Length = 619
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 342 RLCRQGYA-----CPQFHNSRD-KRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQ 395
R C + Y+ CP H + +RR PR + Y PCP K G A C GD+C+
Sbjct: 182 RACSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFKKG------AGCRRGDMCE 235
Query: 396 YCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEM 439
Y H E HP Y++ C D C R V C FAH E+
Sbjct: 236 YAHGVFESWLHPAQYRTRLCKD---GVGCARRV-CFFAHTPDEL 275
>sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis
thaliana GN=At2g41900 PE=1 SV=2
Length = 716
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 59/144 (40%), Gaps = 33/144 (22%)
Query: 342 RLCRQGYA-----CPQFHNSRD-KRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQ 395
R C + Y+ CP H + +RR PR F Y PCP+ + G C GD+C+
Sbjct: 270 RPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKG-------ACRRGDMCE 322
Query: 396 YCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANAREMAGGLGPLDGT 455
Y H E HP Y++ C D C R V C FAH E L PL +
Sbjct: 323 YAHGVFECWLHPAQYRTRLCKD---GTGCARRV-CFFAHTPEE----------LRPLYAS 368
Query: 456 PGSGLSDILAGGLPNSNLDEALLL 479
GS + P SN D A L
Sbjct: 369 TGSAVPS------PRSNADYAAAL 386
>sp|Q84SL2|C3H50_ORYSJ Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa
subsp. japonica GN=Os07g0568300 PE=2 SV=1
Length = 657
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 342 RLCRQGYA-----CPQFHNSRD-KRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQ 395
R C + Y+ CP H + +RR PR Y + PCPN + P C SGD C+
Sbjct: 243 RPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRR------PGGCPSGDSCE 296
Query: 396 YCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEM 439
+ H E HP Y++ C ++ C R + C FAH + E+
Sbjct: 297 FSHGVFESWLHPSQYRTRLC---KEGAACARRI-CFFAHDEDEL 336
Score = 39.7 bits (91), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 45/123 (36%), Gaps = 30/123 (24%)
Query: 163 FRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTGL 222
F+V C H T+ C H RRR RK + P C + G
Sbjct: 240 FKVRPCSRAYSHDWTE-----CPFVHPGENARRRDPRKH--PYTAVP---CPNFRRPGG- 288
Query: 223 CPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCA-----FAHGNP 277
CP GD C F H G E H Y+T +C K GA CA FAH
Sbjct: 289 CPSGDSCEFSH---GVFESWLHPSQYRTRLC-----------KEGAACARRICFFAHDED 334
Query: 278 DLR 280
+LR
Sbjct: 335 ELR 337
>sp|Q93ZS9|C3H47_ARATH Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis
thaliana GN=At3g55980 PE=2 SV=1
Length = 580
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 57/130 (43%), Gaps = 28/130 (21%)
Query: 359 KRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDV 418
+RR PR + Y PCP + G +C GD C+Y H E HP YK+ C D
Sbjct: 243 RRRDPRKYPYTCVPCPEFRKG-------SCPKGDSCEYAHGVFESWLHPAQYKTRLCKD- 294
Query: 419 QQAGYCPRGVFCAFAHVDTEMA---------------NAREMAGGLGPLDGTPGSGLSDI 463
+ G C R V C FAH EM ++ EM GL PL + G +
Sbjct: 295 -ETG-CARKV-CFFAHKREEMRPVNASTGSAVAQSPFSSLEMMPGLSPLAYSSGVSTPPV 351
Query: 464 --LAGGLPNS 471
+A G+P+S
Sbjct: 352 SPMANGVPSS 361
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 25/121 (20%)
Query: 163 FRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDE-TTG 221
F+V+ C H T+ C H RRR RK + Y+ C E G
Sbjct: 217 FKVKPCSRAYSHDWTE-----CAFVHPGENARRRDPRK----YPYT----CVPCPEFRKG 263
Query: 222 LCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTD-ARGLCVKNGAHCAFAHGNPDLR 280
CP GD C + H G E H YKT +C +T AR +C FAH ++R
Sbjct: 264 SCPKGDSCEYAH---GVFESWLHPAQYKTRLCKDETGCARKVCF-------FAHKREEMR 313
Query: 281 P 281
P
Sbjct: 314 P 314
>sp|Q94JI5|C3H10_ORYSJ Zinc finger CCCH domain-containing protein 10 OS=Oryza sativa
subsp. japonica GN=Os01g0738400 PE=2 SV=1
Length = 225
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 20/172 (11%)
Query: 320 PKW-----QDTNYVLSNYKTEQCKRPPRLCRQGYACPQFH-NSRDKRRSPRTFKYRSTPC 373
P W D ++++ +K +C P + +CP H +RR P Y PC
Sbjct: 33 PTWGGRCAYDEDFMMYEFKVRRC--PRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPC 90
Query: 374 PNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFA 433
P+ + A C G C + H E HP Y++ C + C R V C FA
Sbjct: 91 PDFRVAAR----AACPRGSGCPFAHGTFETWLHPSRYRTRPC---RSGMLCARPV-CFFA 142
Query: 434 HVDTEMANAREMAGGLGPLDGTPGSGLSDILAGGLPNSNLDEALLLMQQQQL 485
H D E+ + A P +P + D P S +D +++ QQ+
Sbjct: 143 HNDKELRIVGDDAAAATPSPRSPFTTSED----SPPPSPMDMKQIVLAMQQM 190
Score = 42.0 bits (97), Expect = 0.018, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 50/128 (39%), Gaps = 19/128 (14%)
Query: 153 FDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTY 212
+D FM + EF+V +CP H+ T +C + H RRR + PD
Sbjct: 41 YDEDFM-MYEFKVRRCPRSRAHEWT-----SCPYAHPGEAARRRDPSHVTYTGEPCPDFR 94
Query: 213 CTKYDETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAF 272
CP G CPF H G E H Y+T C LC + C F
Sbjct: 95 VA----ARAACPRGSGCPFAH---GTFETWLHPSRYRTRPCRSGM----LCAR--PVCFF 141
Query: 273 AHGNPDLR 280
AH + +LR
Sbjct: 142 AHNDKELR 149
>sp|Q10EL1|C3H24_ORYSJ Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa
subsp. japonica GN=Os03g0698800 PE=2 SV=1
Length = 764
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 58/143 (40%), Gaps = 22/143 (15%)
Query: 306 PNALDKEGKLLTEDPKWQDTN---YVLSNYKTEQCKRPPRLCRQGYA-----CPQFHNSR 357
P + E K DP D Y ++ K R C + Y+ CP H
Sbjct: 253 PRVVTSEKKEYPVDPSLPDIKNSIYASDEFRMYSFKI--RPCSRAYSHDWTECPFVHPGE 310
Query: 358 D-KRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIYKSTKCN 416
+ +RR PR + Y PCP+ + G C GD+C+Y H E HP Y++ C
Sbjct: 311 NARRRDPRKYHYSCVPCPDFRKG-------VCRRGDMCEYAHGVFECWLHPAQYRTRLCK 363
Query: 417 DVQQAGYCPRGVFCAFAHVDTEM 439
D C R V C FAH E+
Sbjct: 364 D---GTSCNRRV-CFFAHTTDEL 382
Score = 37.0 bits (84), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 51/135 (37%), Gaps = 23/135 (17%)
Query: 148 IIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNY 207
I + I+ + F++ C H T+ C H RRR RK ++Y
Sbjct: 272 IKNSIYASDEFRMYSFKIRPCSRAYSHDWTE-----CPFVHPGENARRRDPRK----YHY 322
Query: 208 SPDTYCTK-YDETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKN 266
S C D G+C GD C + H G E H Y+T +C T N
Sbjct: 323 S----CVPCPDFRKGVCRRGDMCEYAH---GVFECWLHPAQYRTRLCKDGTSC------N 369
Query: 267 GAHCAFAHGNPDLRP 281
C FAH +LRP
Sbjct: 370 RRVCFFAHTTDELRP 384
>sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa
subsp. japonica GN=Os05g0128200 PE=2 SV=1
Length = 601
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 326 NYVLSNYKTEQCKRPPRLCRQGYACPQFHNSRD-KRRSPRTFKYRSTPCPNVKHGDEWGE 384
+ + ++K + C R CP H + +RR PR + Y PCP + G
Sbjct: 212 EFRMYSFKVKPCSR--AYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKG----- 264
Query: 385 PANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEM--ANA 442
+C GD C+Y H E HP Y++ C D + G C R + C FAH E+ N
Sbjct: 265 -GSCRKGDACEYAHGVFECWLHPAQYRTRLCKD--EVG-CARRI-CFFAHKPDELRAVNP 319
Query: 443 REMAGGLGPLDGTPGS 458
++ G+ P +P S
Sbjct: 320 SAVSVGMQPTVSSPRS 335
>sp|Q9XEE6|C3H29_ARATH Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis
thaliana GN=At2g40140 PE=2 SV=1
Length = 597
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 326 NYVLSNYKTEQCKRPPRLCRQGYACPQFHNSRD-KRRSPRTFKYRSTPCPNVKHGDEWGE 384
++ + ++K + C R CP H + +RR PR + Y PCP + G
Sbjct: 214 DFRMFSFKVKPCSRA--YSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKG----- 266
Query: 385 PANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANARE 444
+C GD C+Y H E HP Y++ C D + G C R V C FAH E
Sbjct: 267 --SCPKGDSCEYAHGVFESWLHPAQYRTRLCKD--ETG-CARRV-CFFAHRRDE------ 314
Query: 445 MAGGLGPLDGTPGSGL 460
L P++ + GS +
Sbjct: 315 ----LRPVNASTGSAM 326
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 25/121 (20%)
Query: 163 FRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDE-TTG 221
F+V+ C H T+ C H RRR RK + Y+ C E G
Sbjct: 220 FKVKPCSRAYSHDWTE-----CPFVHPGENARRRDPRK----YPYT----CVPCPEFRKG 266
Query: 222 LCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTD-ARGLCVKNGAHCAFAHGNPDLR 280
CP GD C + H G E H Y+T +C +T AR +C FAH +LR
Sbjct: 267 SCPKGDSCEYAH---GVFESWLHPAQYRTRLCKDETGCARRVCF-------FAHRRDELR 316
Query: 281 P 281
P
Sbjct: 317 P 317
>sp|Q9LUZ4|C3H66_ARATH Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis
thaliana GN=At5g58620 PE=2 SV=1
Length = 607
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 344 CRQGYA-----CPQFHNSRD-KRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYC 397
C + Y+ CP H + +RR PR + Y PCP + G +C GD C+Y
Sbjct: 220 CSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKG-------SCSRGDTCEYA 272
Query: 398 HTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEM 439
H E HP Y++ C D C R V C FAH E+
Sbjct: 273 HGIFECWLHPAQYRTRLCKDETN---CSRRV-CFFAHKPEEL 310
>sp|Q9FU27|C3H2_ORYSJ Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp.
japonica GN=Os01g0192000 PE=2 SV=1
Length = 386
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 342 RLCRQGYA-----CPQFH-NSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQ 395
R C +G + CP H + +RR PR + Y T CP+ + G C+ GD C+
Sbjct: 85 RRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKG-------GCKRGDACE 137
Query: 396 YCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEM 439
Y H E HP Y++ C D G R C FAH ++
Sbjct: 138 YAHGVFECWLHPARYRTQPCKD----GTACRRRVCFFAHTPDQL 177
>sp|Q9M0G2|C3H49_ARATH Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis
thaliana GN=At4g29190 PE=2 SV=1
Length = 356
Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 326 NYVLSNYKTEQCKRPPRLCRQGYACPQFH-NSRDKRRSPRTFKYRSTPCPNVKHGDEWGE 384
++ + ++K +C R CP H + +RR PR + Y T CP+ + G
Sbjct: 79 HFRMYDFKVRRCAR--GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKG----- 131
Query: 385 PANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEM 439
C+ GD C++ H E HP Y++ C D G C R + C FAH ++
Sbjct: 132 --GCKKGDSCEFAHGVFECWLHPARYRTQPCKD---GGNCLRKI-CFFAHSPDQL 180
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 160 LKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDET 219
+ +F+V +C H T+ C + H + RRR RK ++YS T C + +
Sbjct: 82 MYDFKVRRCARGRSHDWTE-----CPYAHPGEKARRRDPRK----YHYS-GTACPDFRK- 130
Query: 220 TGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDL 279
G C GD C F H G E H Y+T C G C++ C FAH L
Sbjct: 131 -GGCKKGDSCEFAH---GVFECWLHPARYRTQPCKDG----GNCLRK--ICFFAHSPDQL 180
Query: 280 R 280
R
Sbjct: 181 R 181
>sp|O82199|C3H20_ARATH Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis
thaliana GN=At2g19810 PE=2 SV=1
Length = 359
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 14/110 (12%)
Query: 326 NYVLSNYKTEQCKRPPRLCRQGYACPQFH-NSRDKRRSPRTFKYRSTPCPNVKHGDEWGE 384
++ + +K +C R CP H + +RR PR F Y T CP + G
Sbjct: 78 HFRMYEFKVRRCAR--GRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKG----- 130
Query: 385 PANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAH 434
C+ GD C++ H E HP Y++ C D G C R V C FAH
Sbjct: 131 --CCKRGDACEFSHGVFECWLHPARYRTQPCKD---GGNCRRRV-CFFAH 174
Score = 36.6 bits (83), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 22/119 (18%)
Query: 160 LKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDET 219
+ EF+V +C H T+ C + H + RRR RK F+YS T C ++
Sbjct: 81 MYEFKVRRCARGRSHDWTE-----CPYAHPGEKARRRDPRK----FHYS-GTACPEF--R 128
Query: 220 TGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPD 278
G C GD C F H G E H Y+T C + R C FAH +PD
Sbjct: 129 KGCCKRGDACEFSH---GVFECWLHPARYRTQPCKDGGNCRRRV------CFFAH-SPD 177
>sp|O82307|C3H23_ARATH Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis
thaliana GN=At2g25900 PE=2 SV=1
Length = 315
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 17/104 (16%)
Query: 342 RLCRQGYA-----CPQFH-NSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQ 395
R C +G + CP H + +RR PR F Y T CP + G +C GD C+
Sbjct: 99 RRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKG-------SCRRGDSCE 151
Query: 396 YCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEM 439
+ H E HP Y++ C D G R C FAH ++
Sbjct: 152 FSHGVFECWLHPSRYRTQPCKD----GTSCRRRICFFAHTTEQL 191
Score = 36.6 bits (83), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 162 EFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTG 221
EF++ +C H T+ C H + RRR RK F+YS T C ++ + G
Sbjct: 95 EFKIRRCARGRSHDWTE-----CPFAHPGEKARRRDPRK----FHYS-GTACPEFRK--G 142
Query: 222 LCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLR 280
C GD C F H G E H Y+T C T R C FAH LR
Sbjct: 143 SCRRGDSCEFSH---GVFECWLHPSRYRTQPCKDGTSCRRRI------CFFAHTTEQLR 192
>sp|Q65X92|C3H37_ORYSJ Zinc finger CCCH domain-containing protein 37 OS=Oryza sativa
subsp. japonica GN=Os05g0525900 PE=2 SV=1
Length = 255
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 16/140 (11%)
Query: 327 YVLSNYKTEQCKRPPRLCRQGYACPQFH-NSRDKRRSPRTFKYRSTPCPNVKHGDEWGEP 385
+++ +K +C R ACP H +RR PR Y PCP+ +
Sbjct: 59 FMMYEFKVRRCAR--ARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPG---- 112
Query: 386 ANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEM-ANARE 444
A C G C + H E HP Y++ C +AG R C FAH E+ A ++E
Sbjct: 113 AACPRGSTCPFAHGTFELWLHPSRYRTRPC----RAGVACRRRVCFFAHTAGELRAGSKE 168
Query: 445 MAGGLGPLDGTPGSGLSDIL 464
+ PL +P S L+ +
Sbjct: 169 DS----PLSLSPKSTLASLW 184
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 21/125 (16%)
Query: 157 FMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKY 216
FM + EF+V +C H T C + H RRR R+ ++ P C +
Sbjct: 59 FM-MYEFKVRRCARARSHDWT-----ACPYAHPGEAARRRDPRR--VAYTGEP---CPDF 107
Query: 217 DETTGL-CPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHG 275
G CP G CPF H G E H Y+T C R C FAH
Sbjct: 108 RRRPGAACPRGSTCPFAH---GTFELWLHPSRYRTRPCRAGVACRRRV------CFFAHT 158
Query: 276 NPDLR 280
+LR
Sbjct: 159 AGELR 163
>sp|Q6L4N4|C3H35_ORYSJ Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa
subsp. japonica GN=Os05g0195200 PE=2 SV=1
Length = 402
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 342 RLCRQGYA-----CPQFH-NSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQ 395
R C +G + CP H + +RR PR + Y T CP+ + G C+ GD C+
Sbjct: 86 RRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKG-------GCKRGDACE 138
Query: 396 YCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEM 439
+ H E HP Y++ C D G R C FAH ++
Sbjct: 139 FAHGVFECWLHPARYRTQPCKD----GTACRRRVCFFAHTPDQL 178
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 49/125 (39%), Gaps = 23/125 (18%)
Query: 160 LKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDET 219
+ EF+V +C H T+ C H + RRR R+ + YS T C + +
Sbjct: 80 MYEFKVRRCARGRSHDWTE-----CPFAHPGEKARRRDPRR----YCYS-GTACPDFRK- 128
Query: 220 TGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDL 279
G C GD C F H G E H Y+T C T R C FAH L
Sbjct: 129 -GGCKRGDACEFAH---GVFECWLHPARYRTQPCKDGTACRRRV------CFFAHTPDQL 178
Query: 280 R--PP 282
R PP
Sbjct: 179 RVLPP 183
>sp|Q9ZWA1|C3H2_ARATH Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis
thaliana GN=At1g03790 PE=2 SV=1
Length = 393
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 14/124 (11%)
Query: 317 TEDPKWQDTNYVLSNYKTEQCKRPPRLCRQGYACPQFH-NSRDKRRSPRTFKYRSTPCPN 375
++DP D ++ + +K +C R CP H + +RR PR F+Y CP
Sbjct: 74 SDDPYASD-HFRMFEFKIRRCTR--SRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPE 130
Query: 376 VKHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHV 435
+ G +C GD C++ H E HP Y++ C D +C R V C FAH
Sbjct: 131 FRRG------GDCSRGDDCEFAHGVFECWLHPIRYRTEACKD---GKHCKRKV-CFFAHS 180
Query: 436 DTEM 439
++
Sbjct: 181 PRQL 184
>sp|Q9FKW2|C3H61_ARATH Zinc finger CCCH domain-containing protein 61 OS=Arabidopsis
thaliana GN=At5g44260 PE=2 SV=1
Length = 381
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 317 TEDPKWQDTNYVLSNYKTEQCKRPPRLCRQGYACPQFH-NSRDKRRSPRTFKYRSTPCPN 375
+EDP D ++ + +K +C R CP H + +RR PR F Y CP
Sbjct: 52 SEDPYAGD-HFRMYEFKIRRCTR--SRSHDWTDCPFSHPGEKARRRDPRRFHYTGEVCPE 108
Query: 376 V-KHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAH 434
+HGD C GD C + H E HP Y++ C D +C R V C FAH
Sbjct: 109 FSRHGD-------CSRGDECGFAHGVFECWLHPSRYRTEACKD---GKHCKRKV-CFFAH 157
Query: 435 VDTEM 439
++
Sbjct: 158 SPRQL 162
>sp|O65036|C3H54_ARATH Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis
thaliana GN=PEI1 PE=1 SV=1
Length = 245
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 318 EDPKWQDTNYVLSNYKTEQCKRPPRLCRQGYA-CPQFHN-SRDKRRSPRTFKYRSTPCPN 375
+D + + + YK ++C PR + CP H + RR PR + Y + CP
Sbjct: 44 DDAIYGSDEFRMYAYKIKRC---PRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPA 100
Query: 376 VKHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHV 435
++G C GD C++ H E HP Y++ CN C R V C FAH
Sbjct: 101 FRNG-------ACHRGDSCEFAHGVFEYWLHPARYRTRACN---AGNLCQRKV-CFFAHA 149
Query: 436 DTEM 439
++
Sbjct: 150 PEQL 153
>sp|Q6NUC6|RC3H1_XENLA Probable E3 ubiquitin-protein ligase Roquin OS=Xenopus laevis
GN=rc3h1 PE=2 SV=1
Length = 1114
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 21/91 (23%)
Query: 401 TEQQFHPE--IYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANAREM----------AGG 448
T+QQ P+ YK+ C D++Q G CPRG C FAH E+ R+M +
Sbjct: 405 TDQQQPPQHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSAS 464
Query: 449 LGPLD------GTPGSGLSDI---LAGGLPN 470
LG L+ G P G D+ GLPN
Sbjct: 465 LGQLNEVGLPIGAPDEGPMDLPPRKPSGLPN 495
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 368 YRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQ---FHPEIYKSTKCNDVQQAGYC 424
Y++ PC N W C G CQ+ H E + HP+ YKS +C GYC
Sbjct: 327 YKTEPCKN------WQISGTCRYGSKCQFAHGNQELKEPPRHPK-YKSERCRSFMMYGYC 379
Query: 425 PRGVFCAFAHVDTEMANAREMA 446
P G+ C F H + +NA++ A
Sbjct: 380 PYGLRCCFLH---DESNAQKSA 398
>sp|Q4VGL6|RC3H1_MOUSE Probable E3 ubiquitin-protein ligase Roquin OS=Mus musculus
GN=Rc3h1 PE=1 SV=1
Length = 1130
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 401 TEQQFHPE--IYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANAREMAGGLGPLDGTPGS 458
+QQ P+ YK+ C D++Q G CPRG C FAH E+ R+M L P S
Sbjct: 403 ADQQQPPQHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSAS 462
Query: 459 GLSDILAGGLPNSNL--DEALLLMQQQQLMNPRDELLCNG 496
L + GLP++ + DE+ + L N + L NG
Sbjct: 463 -LGQLNEVGLPSAPILSDESAV-----DLSNRKPPALPNG 496
>sp|Q5TC82|RC3H1_HUMAN Probable E3 ubiquitin-protein ligase Roquin OS=Homo sapiens
GN=RC3H1 PE=1 SV=1
Length = 1133
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 401 TEQQFHPE--IYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANAREMAGGLGP 451
+QQ P+ YK+ C D++Q G CPRG C FAH E+ R+M L P
Sbjct: 403 ADQQQPPQHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVP 455
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 22/106 (20%)
Query: 382 WGEPANCESGDLCQYCHTRTEQQF---HPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTE 438
+ E C+ G+ CQ+ H E + HP+ YK+ C G+CP G C F H E
Sbjct: 140 FEESGACKYGEKCQFAHGFHELRSLTRHPK-YKTELCRTFHTIGFCPYGPRCHFIHNAEE 198
Query: 439 MANAREMAGGLGPLDGTPGSGLSDILA-----GGLPNSNLDEALLL 479
A PG+G L G PN +LD A LL
Sbjct: 199 RRQA-------------PGAGERPKLHHSLSFSGFPNHSLDSAPLL 231
>sp|Q9HBD1|RC3H2_HUMAN RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Homo sapiens GN=RC3H2 PE=1 SV=2
Length = 1191
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 410 YKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANAR 443
YK++ C D++Q G CPRG C FAH E+ R
Sbjct: 411 YKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKYR 444
>sp|P0C090|RC3H2_MOUSE RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Mus musculus GN=Rc3h2 PE=2 SV=1
Length = 1187
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 410 YKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANAR 443
YK++ C D++Q G CPRG C FAH E+ R
Sbjct: 411 YKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKYR 444
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 388 CESGDLCQYCHTRTEQQFHPEI--YKSTKCNDVQQAGYCPRGVFCAFAHVD 436
C+ G+ CQ+ H E +F + Y++ C + + GYCP G C F H D
Sbjct: 219 CKYGNKCQFAHGLNELKFKKKSNNYRTKPCINWSKLGYCPYGKRCCFKHGD 269
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 380 DEWGEPANCESGDLCQYCHTRTEQQ---FHPEIYKSTKCNDVQQAGYCPRGVFCAFAH 434
++W E +C GD CQ+ H TE + HP YK+ C V CP G C F H
Sbjct: 265 NKWEETGDCPYGDQCQFAHGVTELRPVIRHPR-YKTAVCRMVLAGDVCPYGHRCHFRH 321
Score = 36.2 bits (82), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 213 CTKYDETTGLCPDGDECPFLHRTAGDTERRYHLRY--YKTCMC 253
C K++ET G CP GD+C F H G TE R +R+ YKT +C
Sbjct: 264 CNKWEET-GDCPYGDQCQFAH---GVTELRPVIRHPRYKTAVC 302
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 361 RSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPE-IYKSTKCNDVQ 419
R PRT + P PN + + G+ + + Q + E + + + ++K+ CN +
Sbjct: 213 RKPRTSSNPTNP-PNSQRAYDGGKKGDEQKA---QPADSGAELEVYNQGMFKTELCNKWE 268
Query: 420 QAGYCPRGVFCAFAHVDTEM 439
+ G CP G C FAH TE+
Sbjct: 269 ETGDCPYGDQCQFAHGVTEL 288
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 382 WGEPANCESGDLCQYCHTRTEQQF---HPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTE 438
+ E C+ G+ CQ+ H E + HP+ YK+ C G+CP G C F H
Sbjct: 142 FEENGACKYGEKCQFAHGFHELRSLTRHPK-YKTELCRTFHTIGFCPYGPRCHFIH---- 196
Query: 439 MANAREMAGGLGPLDGTPGSGLSDILAGGLPNSNLDEALL 478
A R A G G S + G PN +LD LL
Sbjct: 197 NAEERRQAPGAGERPKLHHS----LSFSGFPNHSLDSPLL 232
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 41.2 bits (95), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 380 DEWGEPANCESGDLCQYCHTRTEQQ---FHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVD 436
++W E C GD CQ+ H E + HP YK+ C V G CP G C F H
Sbjct: 275 NKWEETGACPYGDQCQFAHGVAELRPVIRHPR-YKTQVCRMVLAGGVCPYGHRCHFRHSI 333
Query: 437 T 437
T
Sbjct: 334 T 334
Score = 36.6 bits (83), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 213 CTKYDETTGLCPDGDECPFLHRTAGDTERRYHLRY--YKTCMCVHDTDARGLCVKNGAHC 270
C K++ET G CP GD+C F H G E R +R+ YKT +C A G+C G C
Sbjct: 274 CNKWEET-GACPYGDQCQFAH---GVAELRPVIRHPRYKTQVC-RMVLAGGVC-PYGHRC 327
Query: 271 AFAH 274
F H
Sbjct: 328 HFRH 331
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 40.8 bits (94), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 382 WGEPANCESGDLCQYCHTRTEQQF---HPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTE 438
+ E C+ GD CQ+ H E + HP+ YK+ C G+CP G C F H E
Sbjct: 123 FEENGACKYGDKCQFAHGIHELRSLTRHPK-YKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
Query: 439 MANAREMAGG 448
R +AGG
Sbjct: 182 R---RALAGG 188
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 40.8 bits (94), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 382 WGEPANCESGDLCQYCHTRTEQQF---HPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTE 438
+ E C+ GD CQ+ H E + HP+ YK+ C G+CP G C F H E
Sbjct: 123 FEENGACKYGDKCQFAHGIHELRSLTRHPK-YKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
Query: 439 MANAREMAGG 448
R +AGG
Sbjct: 182 R---RALAGG 188
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 40.4 bits (93), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 380 DEWGEPANCESGDLCQYCHTRTEQQ---FHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVD 436
++W E C GD CQ+ H E + HP YK+ C V CP G C F H
Sbjct: 229 NKWQETGTCPYGDHCQFAHGIKELRPVIRHPR-YKTEVCRMVLAGDNCPYGHRCHFRHSL 287
Query: 437 TEMANAREMAGGLGP 451
+E +A G P
Sbjct: 288 SEQEKL--VAAGFKP 300
Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 14/64 (21%)
Query: 213 CTKYDETTGLCPDGDECPFLHRTAGDTERRYHLRY--YKTCMCVHDTDARGLCVKNGAHC 270
C K+ ET G CP GD C F H G E R +R+ YKT +C V G +C
Sbjct: 228 CNKWQET-GTCPYGDHCQFAH---GIKELRPVIRHPRYKTEVC--------RMVLAGDNC 275
Query: 271 AFAH 274
+ H
Sbjct: 276 PYGH 279
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 40.4 bits (93), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 365 TFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQ---FHPEIYKSTKCNDVQQA 421
T +Y++ C + +E GE C+ G+ CQ+ H E + HP+ YK+ C
Sbjct: 133 TSRYKTELC---RPFEEAGE---CKYGEKCQFAHGSHELRNVHRHPK-YKTEYCRTFHSV 185
Query: 422 GYCPRGVFCAFAH 434
G+CP G C F H
Sbjct: 186 GFCPYGPRCHFVH 198
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 40.4 bits (93), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 382 WGEPANCESGDLCQYCHTRTEQQF---HPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTE 438
+ E C+ GD CQ+ H E + HP+ YK+ C G+CP G C F H E
Sbjct: 123 FEENGACKYGDKCQFAHGIHELRSLTRHPK-YKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
Query: 439 ---MANAREMA 446
+A AR+++
Sbjct: 182 RRALAGARDLS 192
>sp|Q38X91|AROD_LACSS 3-dehydroquinate dehydratase OS=Lactobacillus sakei subsp. sakei
(strain 23K) GN=aroD PE=3 SV=1
Length = 240
Score = 40.0 bits (92), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 600 DVIRKQLLAIESDPLIDIHEKLQRKQALLQT--VLNSTNSGSHHFGGPLESIVGGTSALS 657
D +R QLLA+++DP D+ + Q+ T +L +T S +H F PL ++ ++
Sbjct: 141 DTLRTQLLAMQADPDADLLKLATTAQSPADTTRLLAATQSFTHQFDKPLTTMAMSEFGVA 200
Query: 658 SNNFSPTTSSPLSHFLSSRPPAPG 681
S F S +S P APG
Sbjct: 201 SRIFGGQFGSAISFGYLETPSAPG 224
>sp|Q9VM92|TTL3B_DROME Tubulin glycylase 3B OS=Drosophila melanogaster GN=TTLL3B PE=1 SV=2
Length = 756
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 16/72 (22%)
Query: 625 QALLQTVLNSTNSGSHHF------GGPLESIVGGTSALSSNNFSPTT----------SSP 668
Q L ++ NST+ GSH GG +GG+S++ SNNFSP + S+P
Sbjct: 46 QKPLTSLNNSTSLGSHFSNFGALGGGSGSKTMGGSSSMGSNNFSPDSIGNLLARVRASTP 105
Query: 669 LSHFLSSRPPAP 680
L ++S P AP
Sbjct: 106 LPRTVTSSPTAP 117
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 22/105 (20%)
Query: 382 WGEPANCESGDLCQYCHTRTEQQF---HPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTE 438
+ E C+ G+ CQ+ H E + HP+ YK+ C G+CP G C H E
Sbjct: 110 FEESGACKYGEKCQFAHGFHELRSLTRHPK-YKTELCRTFHTIGFCPYGPRCHLIHNAEE 168
Query: 439 MANAREMAGGLGPLDGTPGSGLSDILA-----GGLPNSNLDEALL 478
A PG+G L G PN +LD LL
Sbjct: 169 RRQA-------------PGAGERPKLHHSLSFSGFPNHSLDSPLL 200
>sp|A7TQ73|DUS3_VANPO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=DUS3 PE=3
SV=1
Length = 664
Score = 37.4 bits (85), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 324 DTNYVLSNYKTEQCKRPPRLCRQGYACPQFHNSR----DKRRSPRTFKYRSTPCPNVKHG 379
D + Y E+ R+ +G + H + +K R R K CP G
Sbjct: 41 DNSQFQQAYNDEEIADADRIGAEGGKNSRKHKKKQRGQNKSRDNRQVKEEKVLCPKYIQG 100
Query: 380 DEWGEPANCESGDLCQYCHTRTEQQFH--PEIY--KSTKCNDVQQAGYCPRGVFCAF--A 433
+ C+ GD C++ H E H PEI + C G+CP G C F +
Sbjct: 101 YSEDGESLCQFGDKCRFVHDIKEYLSHKKPEIELDQFKICPVFDALGFCPMGFKCRFMSS 160
Query: 434 HVDTE 438
H D E
Sbjct: 161 HFDKE 165
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 20/86 (23%)
Query: 403 QQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANAREMAGGLGPLDGTPG----- 457
Q P +K+ CN + GYCP G C FAH E+ GGL +G G
Sbjct: 254 QILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL---HRFGGGLVEEEGKDGVSPNP 310
Query: 458 ---------SGLSD---ILAGGLPNS 471
GLSD +L+ G+P++
Sbjct: 311 DTKQTVQNPKGLSDTTTLLSPGVPHN 336
>sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream virus (isolate Blicca
bjoerkna L./Germany/DF24/00) GN=rep PE=1 SV=1
Length = 6872
Score = 37.0 bits (84), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 544 VNNAFNNNHAGGGGTGLSEAASLTQARLTLVENHVNNAFNNNHAGGGGTGLSEAASDVIR 603
+NN F +N G + ++T + N N NN G G TG AA D
Sbjct: 1640 INNPFASNE--GVTFAVHNIGAITTTEGEFIVNAANKQLNN---GTGVTGAIFAAHDKEL 1694
Query: 604 KQLLAIESDPLIDIHEKLQRKQALLQTVLNSTNS 637
K AI++ P +KL+ Q ++QT++ + NS
Sbjct: 1695 KLTQAIKALPTYGASDKLESHQHVVQTIIKNNNS 1728
>sp|Q008X5|R1A_WBV24 Replicase polyprotein 1a OS=White bream virus (isolate Blicca
bjoerkna L./Germany/DF24/00) GN=1a PE=1 SV=1
Length = 4555
Score = 37.0 bits (84), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 544 VNNAFNNNHAGGGGTGLSEAASLTQARLTLVENHVNNAFNNNHAGGGGTGLSEAASDVIR 603
+NN F +N G + ++T + N N NN G G TG AA D
Sbjct: 1640 INNPFASNE--GVTFAVHNIGAITTTEGEFIVNAANKQLNN---GTGVTGAIFAAHDKEL 1694
Query: 604 KQLLAIESDPLIDIHEKLQRKQALLQTVLNSTNS 637
K AI++ P +KL+ Q ++QT++ + NS
Sbjct: 1695 KLTQAIKALPTYGASDKLESHQHVVQTIIKNNNS 1728
>sp|A6NMK7|CPS4L_HUMAN Putative cleavage and polyadenylation specificity factor subunit
4-like protein OS=Homo sapiens GN=CPSF4L PE=2 SV=3
Length = 179
Score = 36.6 bits (83), Expect = 0.62, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 14/64 (21%)
Query: 219 TTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPD 278
T GLC G CPF H R K +C H RGLC K G HC F H
Sbjct: 45 TKGLCEKGKLCPFRHD-----------RGEKMVVCKHWL--RGLC-KKGDHCKFLHQYDL 90
Query: 279 LRPP 282
R P
Sbjct: 91 TRMP 94
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 36.6 bits (83), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 78/232 (33%), Gaps = 39/232 (16%)
Query: 247 YYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLRPPVYDIKEIQALENPEGD-------P 299
++KT +C V N C FAHG +LR P + +EI A + P
Sbjct: 87 FFKTKLCCKFRAGTCPYVTN---CNFAHGMEELRKPPPNWQEIVAAHEEATEAREEHQIP 143
Query: 300 NSNSNGPNALDKEGKLLTEDPKWQDTNYVLSNYKTEQCKR--PPRLCRQGYACPQFHNSR 357
S+GP A G YK CK+ C G AC H+ +
Sbjct: 144 IMTSSGPTAGGDAGCGGGG------GGGSGRAYKGRHCKKFYTDEGCPYGDACTFLHDEQ 197
Query: 358 DKRR-------SPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIY 410
K R SP N A +G + + P +
Sbjct: 198 SKARESVAISLSPSVGGGGGGGSYNSAAAAAASASAAAGNGPMQK-----------PSNW 246
Query: 411 KSTKCNDVQQAGYCPRGVFCAFAHVDTEMANAREMAGGLGPLDGTPGSGLSD 462
K+ CN + GYCP G C FAH E+ + GGL +D + D
Sbjct: 247 KTRICNKWEMTGYCPFGSKCHFAHGAAEL---HKYGGGLVDIDSRDAAATPD 295
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 267,836,226
Number of Sequences: 539616
Number of extensions: 11969411
Number of successful extensions: 57290
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 53849
Number of HSP's gapped (non-prelim): 2018
length of query: 711
length of database: 191,569,459
effective HSP length: 125
effective length of query: 586
effective length of database: 124,117,459
effective search space: 72732830974
effective search space used: 72732830974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)