Query psy3120
Match_columns 711
No_of_seqs 312 out of 811
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 16:58:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.4 3.9E-14 1.3E-18 118.8 2.8 66 367-438 9-76 (77)
2 1m9o_A Tristetraproline; Cys3H 99.2 2.2E-12 7.4E-17 108.2 2.8 67 330-402 8-76 (77)
3 2cqe_A KIAA1064 protein; CCCH 98.7 6.3E-09 2.1E-13 92.6 3.2 52 368-438 11-62 (98)
4 3d2q_A Muscleblind-like protei 98.7 3.1E-09 1.1E-13 88.9 0.8 63 370-441 6-69 (70)
5 3d2q_A Muscleblind-like protei 98.6 4.7E-09 1.6E-13 87.9 0.4 61 211-280 7-68 (70)
6 2d9n_A Cleavage and polyadenyl 98.6 2.5E-08 8.5E-13 84.8 4.3 69 161-258 6-74 (77)
7 2d9n_A Cleavage and polyadenyl 98.5 1.8E-08 6.1E-13 85.7 2.0 64 363-441 3-66 (77)
8 2cqe_A KIAA1064 protein; CCCH 98.5 6.1E-08 2.1E-12 86.2 4.4 55 207-281 11-65 (98)
9 2rhk_C Cleavage and polyadenyl 98.3 9E-08 3.1E-12 80.8 0.1 58 368-440 14-71 (72)
10 2e5s_A Otthump00000018578; ZF- 98.3 7.5E-08 2.6E-12 85.9 -1.0 64 369-441 19-83 (98)
11 2d9m_A Zinc finger CCCH-type d 98.2 1.9E-07 6.6E-12 78.9 1.0 32 410-442 18-49 (69)
12 2rhk_C Cleavage and polyadenyl 98.2 4.3E-07 1.5E-11 76.6 2.1 55 211-280 17-71 (72)
13 2e5s_A Otthump00000018578; ZF- 98.1 1.6E-07 5.6E-12 83.7 -2.3 62 211-281 21-83 (98)
14 2d9m_A Zinc finger CCCH-type d 97.8 4.1E-06 1.4E-10 70.9 1.7 42 211-257 21-65 (69)
15 3d2n_A Muscleblind-like protei 97.7 1.6E-05 5.5E-10 69.1 2.5 63 369-442 8-71 (83)
16 3d2n_A Muscleblind-like protei 97.5 4.2E-05 1.5E-09 66.4 3.5 60 161-234 5-64 (83)
17 2rpp_A Muscleblind-like protei 97.4 3.4E-05 1.2E-09 67.9 1.4 59 162-234 14-72 (89)
18 2rpp_A Muscleblind-like protei 97.3 6.6E-05 2.2E-09 66.1 1.9 62 370-442 17-79 (89)
19 3u9g_A Zinc finger CCCH-type a 96.0 0.0049 1.7E-07 62.5 4.7 80 336-438 91-199 (229)
20 3u9g_A Zinc finger CCCH-type a 95.7 0.0077 2.6E-07 61.1 4.5 89 167-278 91-199 (229)
21 2lhn_A Nuclear polyadenylated 92.2 0.017 6E-07 50.0 0.0 65 334-437 9-73 (80)
22 2fc6_A Nuclear, target of EGR1 92.2 0.046 1.6E-06 43.7 1.3 28 248-277 18-45 (50)
23 2fc6_A Nuclear, target of EGR1 92.1 0.027 9.2E-07 45.1 -0.0 28 410-437 18-45 (50)
24 2lhn_A Nuclear polyadenylated 89.6 0.055 1.9E-06 46.9 0.0 64 166-277 10-73 (80)
25 3u1l_A PRE-mRNA-splicing facto 80.7 0.35 1.2E-05 49.0 0.3 25 211-237 71-95 (240)
26 3hd7_A Vesicle-associated memb 55.8 2.7 9.4E-05 36.7 0.4 8 56-63 51-58 (91)
27 3u1l_A PRE-mRNA-splicing facto 52.4 2.9 9.9E-05 42.3 -0.1 25 370-401 70-94 (240)
28 1l8d_A DNA double-strand break 38.8 25 0.00085 30.7 3.8 39 35-73 19-59 (112)
29 2rh3_A Protein VIRC2; ribbon-h 34.1 7.3 0.00025 35.7 -0.4 20 671-690 3-22 (121)
30 3v33_A Ribonuclease ZC3H12A; r 31.4 12 0.00041 37.9 0.6 32 359-399 181-212 (223)
31 2kog_A Vesicle-associated memb 24.9 25 0.00086 32.1 1.4 25 36-60 33-61 (119)
32 3v33_A Ribonuclease ZC3H12A; r 22.7 18 0.00062 36.6 0.0 25 411-438 191-215 (223)
33 2kog_A Vesicle-associated memb 20.3 72 0.0025 29.1 3.5 11 16-26 58-68 (119)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.42 E-value=3.9e-14 Score=118.78 Aligned_cols=66 Identities=30% Similarity=0.656 Sum_probs=28.8
Q ss_pred ccCCCCCCCCcCCCCCCCCCCCCCCCCcccccCccccccc--cccccccccccCccccCCCCCCCCCCCCcchh
Q psy3120 367 KYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFH--PEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTE 438 (711)
Q Consensus 367 kYkT~LCP~fkkG~~w~~~G~Cp~GdsC~FAHg~~El~yH--P~~YKTklC~~fq~tG~Cp~G~~C~FAHgeaE 438 (711)
+|++++|+.|.. .|.|++|++|+|+|+..|++.. ...|||++|.+|...|.|++|.+|+|+|+..|
T Consensus 9 ~~kt~~C~~f~~------~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 9 RYKTELCRTYSE------SGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp CCCSCCCSGGGG------TSCCTTTTTCSSCSSSCCGGGTC---------------------------------
T ss_pred CccchhCHHhhh------CCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 588999999852 2699999999999999998842 23599999999988999999999999999876
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.24 E-value=2.2e-12 Score=108.18 Aligned_cols=67 Identities=34% Similarity=0.649 Sum_probs=29.8
Q ss_pred ccccccccCCC--CCCCCCCCCCCCCCCCcCccCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCcccccCccc
Q psy3120 330 SNYKTEQCKRP--PRLCRQGYACPQFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTE 402 (711)
Q Consensus 330 ~~YKTklC~~~--~G~C~~G~~CpFAHn~kDlRR~P~~~kYkT~LCP~fkkG~~w~~~G~Cp~GdsC~FAHg~~E 402 (711)
..|||++|++| .|.|.+|++|.|+|+..++|..+..-.|++.+|+.|.. .|.|++|++|+|+|+..|
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~------~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKL------QGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhh------CcCCCCcCcCCCCCCCCC
Confidence 35899999988 48999999999999999988654444678999998753 479999999999999876
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.69 E-value=6.3e-09 Score=92.59 Aligned_cols=52 Identities=23% Similarity=0.478 Sum_probs=45.7
Q ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCCcccccCccccccccccccccccccCccccCCCCCCCCCCCCcchh
Q psy3120 368 YRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTE 438 (711)
Q Consensus 368 YkT~LCP~fkkG~~w~~~G~Cp~GdsC~FAHg~~El~yHP~~YKTklC~~fq~tG~Cp~G~~C~FAHgeaE 438 (711)
+++.+|+.|.. |.|.+|++|+|+|. +.+|..|...|.|++|+.|+|+|....
T Consensus 11 ~k~~lC~~f~~-------G~C~~G~~C~f~H~------------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 11 KKRELCKFYIT-------GFCARAENCPYMHG------------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp CCCSBCTTTTT-------TCCSCSTTCSSBSS------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCCccCccccc-------CcCCCCCCCCCCCC------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 56899999865 59999999999998 568999977899999999999998643
No 4
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.67 E-value=3.1e-09 Score=88.90 Aligned_cols=63 Identities=24% Similarity=0.574 Sum_probs=56.1
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCC-cccccCccccccccccccccccccCccccCCCCCCCCCCCCcchhhhc
Q psy3120 370 STPCPNVKHGDEWGEPANCESGDL-CQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMAN 441 (711)
Q Consensus 370 T~LCP~fkkG~~w~~~G~Cp~Gds-C~FAHg~~El~yHP~~YKTklC~~fq~tG~Cp~G~~C~FAHgeaELR~ 441 (711)
.+.|+.|.+| .|.+|++ |+|+|..++....+..+++..|.+|.+ |.|.+| .|+|.|...+|+.
T Consensus 6 ~~vC~~f~~G-------~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 6 LEVCREYQRG-------NCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAHLQA 69 (70)
T ss_dssp EEBCHHHHTT-------CCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHHHHC
T ss_pred chhCHHHhcC-------CCCCCCCCCCCccCcccccccccCCcceeccccCc-CCCCCC-CcCeeCCHHHHhc
Confidence 5689999765 8999994 999999988877888899999999985 999998 9999999998874
No 5
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.62 E-value=4.7e-09 Score=87.87 Aligned_cols=61 Identities=23% Similarity=0.609 Sum_probs=51.5
Q ss_pred ccccccccccCCCCCCC-CCCCCccCCCcccccccccccccccccccccccccccccccccCCCCCCCCCC
Q psy3120 211 TYCTKYDETTGLCPDGD-ECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLR 280 (711)
Q Consensus 211 ~lCpkf~e~tG~Cp~GD-~C~FAHs~~G~~E~~yHP~~YKTklCk~~~~~kG~C~K~G~~C~FAHg~~ELR 280 (711)
.+|+.| ..|.|.+|| .|+|+|. ..+.+.++...++.+|.+|. +|.|. +| .|+|+|.+.+|+
T Consensus 7 ~vC~~f--~~G~C~rg~~~C~f~H~---~~~~~~~~~~~~~~vC~~fl--kG~C~-r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 7 EVCREY--QRGNCNRGENDCRFAHP---ADSTMIDTNDNTVTVCMDYI--KGRCS-RE-KCKYFHPPAHLQ 68 (70)
T ss_dssp EBCHHH--HTTCCSSCTTTCSSBCC---CTTSCCBTTTTEEEBCHHHH--TTCCC-CT-TCCSBCCCHHHH
T ss_pred hhCHHH--hcCCCCCCCCCCCCccC---cccccccccCCcceeccccC--cCCCC-CC-CcCeeCCHHHHh
Confidence 689999 579999999 5999996 35566677889999999997 59996 77 999999887665
No 6
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.5e-08 Score=84.78 Aligned_cols=69 Identities=25% Similarity=0.454 Sum_probs=55.2
Q ss_pred cccccccccccccCcccCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCccCCCccc
Q psy3120 161 KEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTGLCPDGDECPFLHRTAGDTE 240 (711)
Q Consensus 161 ~~FKTk~C~~f~qg~C~~g~p~~C~FAH~~ed~RR~P~~r~dGt~nYst~~lCpkf~e~tG~Cp~GD~C~FAHs~~G~~E 240 (711)
...|+..|.+|++|.|.+|+ +|.|+|.....| +.+|..|. ..|.|+ |++|+|+|.. .
T Consensus 6 ~~~k~~~C~~fl~G~C~~G~--~C~fsH~~~~~~---------------~~~C~~f~-~~G~C~-~~~C~f~H~~---~- 62 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCKKGD--QCEFLHEYDMTK---------------MPECYFYS-KFGECS-NKECPFLHID---P- 62 (77)
T ss_dssp SCCTTSBCHHHHTTCCSCTT--SSSSBCSCCTTT---------------SCBCHHHH-HTCCCC-CSSCSSBCCC---T-
T ss_pred CCCcceeCHhHccCcCCCCC--CCCCccccccCc---------------CCCCcccC-CCCccC-CCCeeccCCC---c-
Confidence 35799999999999999997 899999976432 24799884 349999 8999999962 1
Q ss_pred cccccccccccccccccc
Q psy3120 241 RRYHLRYYKTCMCVHDTD 258 (711)
Q Consensus 241 ~~yHP~~YKTklCk~~~~ 258 (711)
..++..|.+|..
T Consensus 63 ------~~~~~~C~~f~~ 74 (77)
T 2d9n_A 63 ------ESKIKDCPWSGP 74 (77)
T ss_dssp ------TSSCSSSSCCTT
T ss_pred ------cccCCCCccccc
Confidence 247889999874
No 7
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=1.8e-08 Score=85.68 Aligned_cols=64 Identities=25% Similarity=0.500 Sum_probs=52.0
Q ss_pred CCccccCCCCCCCCcCCCCCCCCCCCCCCCCcccccCccccccccccccccccccCccccCCCCCCCCCCCCcchhhhc
Q psy3120 363 PRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMAN 441 (711)
Q Consensus 363 P~~~kYkT~LCP~fkkG~~w~~~G~Cp~GdsC~FAHg~~El~yHP~~YKTklC~~fq~tG~Cp~G~~C~FAHgeaELR~ 441 (711)
|....+++++|+.|..| .|.+|++|+|+|...+ -|+..|.+|.+.|.|. |+.|+|+|...+.+.
T Consensus 3 p~~~~~k~~~C~~fl~G-------~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~~ 66 (77)
T 2d9n_A 3 SGSSGEKTVVCKHWLRG-------LCKKGDQCEFLHEYDM-------TKMPECYFYSKFGECS-NKECPFLHIDPESKI 66 (77)
T ss_dssp CCCSCCTTSBCHHHHTT-------CCSCTTSSSSBCSCCT-------TTSCBCHHHHHTCCCC-CSSCSSBCCCTTSSC
T ss_pred CCCCCCcceeCHhHccC-------cCCCCCCCCCcccccc-------CcCCCCcccCCCCccC-CCCeeccCCCccccC
Confidence 33345678999999765 8999999999998764 2566899999779999 899999999876543
No 8
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.51 E-value=6.1e-08 Score=86.24 Aligned_cols=55 Identities=29% Similarity=0.732 Sum_probs=45.1
Q ss_pred ccccccccccccccCCCCCCCCCCCCccCCCcccccccccccccccccccccccccccccccccCCCCCCCCCCC
Q psy3120 207 YSPDTYCTKYDETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLRP 281 (711)
Q Consensus 207 Yst~~lCpkf~e~tG~Cp~GD~C~FAHs~~G~~E~~yHP~~YKTklCk~~~~~kG~C~K~G~~C~FAHg~~ELR~ 281 (711)
+++ .+|+.| ..|.|.+||+|+|+|+ +.+|++|.. +|.|+ +|+.|+|+|.....+.
T Consensus 11 ~k~-~lC~~f--~~G~C~~G~~C~f~H~---------------~~~C~~f~~-~G~C~-~G~~C~f~H~~~~~~~ 65 (98)
T 2cqe_A 11 KKR-ELCKFY--ITGFCARAENCPYMHG---------------DFPCKLYHT-TGNCI-NGDDCMFSHDPLTEET 65 (98)
T ss_dssp CCC-SBCTTT--TTTCCSCSTTCSSBSS---------------SSBCSHHHH-TSCCS-SCTTCSSBCCCCCHHH
T ss_pred CCC-ccCccc--ccCcCCCCCCCCCCCC---------------CCcCcCccc-CCcCC-CCCCCcccCCCCcccc
Confidence 344 799988 5899999999999994 678999853 59996 9999999998764443
No 9
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.29 E-value=9e-08 Score=80.79 Aligned_cols=58 Identities=28% Similarity=0.592 Sum_probs=47.6
Q ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCCcccccCccccccccccccccccccCccccCCCCCCCCCCCCcchhhh
Q psy3120 368 YRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMA 440 (711)
Q Consensus 368 YkT~LCP~fkkG~~w~~~G~Cp~GdsC~FAHg~~El~yHP~~YKTklC~~fq~tG~Cp~G~~C~FAHgeaELR 440 (711)
+++++|+.|..| .|.+|++|+|+|.... -++..|.+|.+.|.|.+ +.|+|.|...+.+
T Consensus 14 ~k~~vCk~fl~G-------~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~k 71 (72)
T 2rhk_C 14 EKTVVCKHWLRG-------LCKKGDQCEFLHEYDM-------TKMSECYFYSKFGECSN-KECPFLHIDPESK 71 (72)
T ss_dssp CCCSBCHHHHTT-------CCCCGGGSSSBCSCCT-------TSCCBCHHHHHHSCCSB-TTCCSBCCCCC--
T ss_pred CcCeeCHHHhcC-------CCCCCCCCCCcccccc-------ccCCcccccCCCCCCCC-CCeeccCCCcccc
Confidence 457899999765 8999999999998542 36778999997699999 9999999876543
No 10
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=7.5e-08 Score=85.86 Aligned_cols=64 Identities=23% Similarity=0.557 Sum_probs=55.2
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCC-CcccccCccccccccccccccccccCccccCCCCCCCCCCCCcchhhhc
Q psy3120 369 RSTPCPNVKHGDEWGEPANCESGD-LCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMAN 441 (711)
Q Consensus 369 kT~LCP~fkkG~~w~~~G~Cp~Gd-sC~FAHg~~El~yHP~~YKTklC~~fq~tG~Cp~G~~C~FAHgeaELR~ 441 (711)
+.+.|+.|..| .|.+|+ .|+|+|...+....+...++..|.+|.+ |.|.++ .|+|.|...+++.
T Consensus 19 k~~VCr~FlrG-------~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 19 KLEVCREFQRG-------NCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAHLQA 83 (98)
T ss_dssp EEEBCSHHHHT-------CCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHHHHH
T ss_pred hhhhhHHHhcC-------cCCCCCCCCCCcCCchhccccccCCccccchhhcc-CCCCCC-CcCccCChHHHHH
Confidence 35789999865 899999 7999999887766666788999999985 999998 9999999988765
No 11
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.9e-07 Score=78.90 Aligned_cols=32 Identities=31% Similarity=0.586 Sum_probs=29.3
Q ss_pred ccccccccCccccCCCCCCCCCCCCcchhhhcc
Q psy3120 410 YKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANA 442 (711)
Q Consensus 410 YKTklC~~fq~tG~Cp~G~~C~FAHgeaELR~~ 442 (711)
.|+++|++| .+|.|++|+.|+||||++||+..
T Consensus 18 ~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~~ 49 (69)
T 2d9m_A 18 GYFSICDRY-MNGTCPEGNSCKFAHGNAELHEW 49 (69)
T ss_dssp SCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHHH
T ss_pred CCcccCccc-CcCCCCCCCccCCcCCHHHHhhH
Confidence 577999999 57999999999999999999984
No 12
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.19 E-value=4.3e-07 Score=76.64 Aligned_cols=55 Identities=36% Similarity=0.802 Sum_probs=43.2
Q ss_pred ccccccccccCCCCCCCCCCCCccCCCcccccccccccccccccccccccccccccccccCCCCCCCCCC
Q psy3120 211 TYCTKYDETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLR 280 (711)
Q Consensus 211 ~lCpkf~e~tG~Cp~GD~C~FAHs~~G~~E~~yHP~~YKTklCk~~~~~kG~C~K~G~~C~FAHg~~ELR 280 (711)
.+|..|. .|.|.+||+|+|+|+. + ..++.+|++|.. .|.|. + +.|+|.|...+.|
T Consensus 17 ~vCk~fl--~G~C~~G~~C~fsH~~--~--------~~~~~~C~~f~~-~G~C~-~-~~C~y~H~~p~~k 71 (72)
T 2rhk_C 17 VVCKHWL--RGLCKKGDQCEFLHEY--D--------MTKMSECYFYSK-FGECS-N-KECPFLHIDPESK 71 (72)
T ss_dssp SBCHHHH--TTCCCCGGGSSSBCSC--C--------TTSCCBCHHHHH-HSCCS-B-TTCCSBCCCCC--
T ss_pred eeCHHHh--cCCCCCCCCCCCcccc--c--------cccCCcccccCC-CCCCC-C-CCeeccCCCcccc
Confidence 6999884 5999999999999963 1 236788999973 38996 7 9999999876544
No 13
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.6e-07 Score=83.67 Aligned_cols=62 Identities=21% Similarity=0.614 Sum_probs=50.1
Q ss_pred ccccccccccCCCCCCC-CCCCCccCCCcccccccccccccccccccccccccccccccccCCCCCCCCCCC
Q psy3120 211 TYCTKYDETTGLCPDGD-ECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLRP 281 (711)
Q Consensus 211 ~lCpkf~e~tG~Cp~GD-~C~FAHs~~G~~E~~yHP~~YKTklCk~~~~~kG~C~K~G~~C~FAHg~~ELR~ 281 (711)
.+|+.|. .|.|.+|| .|+|+|.. .+.+..+...++.+|.+|. +|.|. ++ .|+|.|.+.+|+.
T Consensus 21 ~VCr~Fl--rG~C~rgd~~C~FsH~~---~~~~~~~~~~~~~vC~~fl--kG~C~-r~-~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 21 EVCREFQ--RGNCARGETDCRFAHPA---DSTMIDTSDNTVTVCMDYI--KGRCM-RE-KCKYFHPPAHLQA 83 (98)
T ss_dssp EBCSHHH--HTCCSSHHHHCSSBCCS---SCCSCCTTTCEEEBCHHHH--HTCCC-CT-TCCSBCCCHHHHH
T ss_pred hhhHHHh--cCcCCCCCCCCCCcCCc---hhccccccCCccccchhhc--cCCCC-CC-CcCccCChHHHHH
Confidence 6899995 69999999 79999963 3344445668899999997 59996 77 9999998877664
No 14
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=4.1e-06 Score=70.90 Aligned_cols=42 Identities=26% Similarity=0.605 Sum_probs=35.0
Q ss_pred ccccccccccCCCCCCCCCCCCccCCCcccccc---cccccccccccccc
Q psy3120 211 TYCTKYDETTGLCPDGDECPFLHRTAGDTERRY---HLRYYKTCMCVHDT 257 (711)
Q Consensus 211 ~lCpkf~e~tG~Cp~GD~C~FAHs~~G~~E~~y---HP~~YKTklCk~~~ 257 (711)
++|..| .+|.||+|+.|.|||+ ..|++- .+.+.|+++++-+.
T Consensus 21 ~LC~~~--~~G~C~~G~~C~FAHG---~~ELr~~~~R~~~~k~k~~~Ar~ 65 (69)
T 2d9m_A 21 SICDRY--MNGTCPEGNSCKFAHG---NAELHEWEERRDALKMKLNKASG 65 (69)
T ss_dssp SBCHHH--HHSCCSSCSSCSSBSS---HHHHHHHHHHHHHHTTTCCSCCC
T ss_pred ccCccc--CcCCCCCCCccCCcCC---HHHHhhHHHHHHHHHHHHHHHhc
Confidence 699999 4789999999999995 678764 67888999988654
No 15
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.66 E-value=1.6e-05 Score=69.05 Aligned_cols=63 Identities=24% Similarity=0.532 Sum_probs=49.6
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCC-CcccccCccccccccccccccccccCccccCCCCCCCCCCCCcchhhhcc
Q psy3120 369 RSTPCPNVKHGDEWGEPANCESGD-LCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANA 442 (711)
Q Consensus 369 kT~LCP~fkkG~~w~~~G~Cp~Gd-sC~FAHg~~El~yHP~~YKTklC~~fq~tG~Cp~G~~C~FAHgeaELR~~ 442 (711)
+.+.|+.|..| .|.+|| .|+|+|....+.. ..-+...|.+|. .|.|.++ .|+|.|...++...
T Consensus 8 ~~~VCr~FlrG-------~C~r~d~~C~f~H~~~~~~~--~~~~~~vC~dfl-kG~C~r~-~C~y~H~~~~l~~~ 71 (83)
T 3d2n_A 8 TLEVCREFQRG-------TCSRPDTECKFAHPSKSCQV--ENGRVIACFDSL-KGRCSRE-NCKYLHPPPHLKTQ 71 (83)
T ss_dssp EEEBCTTGGGT-------CCCSCTTTCSSBCCCTTCCE--ETTEEECCHHHH-TTCCCCS-SCSSCCCCHHHHHH
T ss_pred cchhcHHHhcC-------CCCCCCCCCCCcCCCccccc--cCCceeehhHhh-hccccCC-CcceeCChHHHHHH
Confidence 35789999865 899997 8999998754221 124567899998 4999997 99999999887653
No 16
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.54 E-value=4.2e-05 Score=66.39 Aligned_cols=60 Identities=23% Similarity=0.448 Sum_probs=46.3
Q ss_pred cccccccccccccCcccCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCcc
Q psy3120 161 KEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTGLCPDGDECPFLHR 234 (711)
Q Consensus 161 ~~FKTk~C~~f~qg~C~~g~p~~C~FAH~~ed~RR~P~~r~dGt~nYst~~lCpkf~e~tG~Cp~GD~C~FAHs 234 (711)
...|+..|..|.+|.|..++ ..|.|+|......-.+ + + ...|..| ..|.|.++ .|+|.|.
T Consensus 5 ~~~~~~VCr~FlrG~C~r~d-~~C~f~H~~~~~~~~~-----~----~-~~vC~df--lkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 5 KWLTLEVCREFQRGTCSRPD-TECKFAHPSKSCQVEN-----G----R-VIACFDS--LKGRCSRE-NCKYLHP 64 (83)
T ss_dssp GGGEEEBCTTGGGTCCCSCT-TTCSSBCCCTTCCEET-----T----E-EECCHHH--HTTCCCCS-SCSSCCC
T ss_pred ccccchhcHHHhcCCCCCCC-CCCCCcCCCccccccC-----C----c-eeehhHh--hhccccCC-CcceeCC
Confidence 45688999999999999984 4699999976432111 1 1 2589988 57999998 9999995
No 17
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.42 E-value=3.4e-05 Score=67.89 Aligned_cols=59 Identities=22% Similarity=0.452 Sum_probs=45.7
Q ss_pred ccccccccccccCcccCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCcc
Q psy3120 162 EFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTGLCPDGDECPFLHR 234 (711)
Q Consensus 162 ~FKTk~C~~f~qg~C~~g~p~~C~FAH~~ed~RR~P~~r~dGt~nYst~~lCpkf~e~tG~Cp~GD~C~FAHs 234 (711)
..|+..|..|.+|.|..++ ..|.|+|......-. ++. ...|..| .+|.|.++ .|+|.|.
T Consensus 14 ~~~~~VCrdFlrG~C~r~d-~~CrfsH~~~~~~v~-----~~~-----~~vC~df--lkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 14 WLTLEVCRQFQRGTCSRSD-EECKFAHPPKSCQVE-----NGR-----VIACFDS--LKGRCSRE-NCKYLHP 72 (89)
T ss_dssp SSEECBCHHHHHTCCCCCT-TTSSSBCCCSSSCCB-----TTB-----EEBCHHH--HHTCCCCT-TCCSBCC
T ss_pred cchhhhchHHhcCCCCCCC-CCCCCcCCCcccccc-----CCc-----eeeehhh--hhCcCCCC-CcceecC
Confidence 4578899999999999984 469999997753221 121 2579888 58999997 9999995
No 18
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.32 E-value=6.6e-05 Score=66.12 Aligned_cols=62 Identities=24% Similarity=0.543 Sum_probs=49.1
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCC-CcccccCccccccccccccccccccCccccCCCCCCCCCCCCcchhhhcc
Q psy3120 370 STPCPNVKHGDEWGEPANCESGD-LCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANA 442 (711)
Q Consensus 370 T~LCP~fkkG~~w~~~G~Cp~Gd-sC~FAHg~~El~yHP~~YKTklC~~fq~tG~Cp~G~~C~FAHgeaELR~~ 442 (711)
.+.|+.|..| .|.+|+ .|+|+|-......- .-+...|.+|. .|.|.++ .|+|.|....+...
T Consensus 17 ~~VCrdFlrG-------~C~r~d~~CrfsH~~~~~~v~--~~~~~vC~dfl-kG~C~r~-~Cky~H~~~hl~~~ 79 (89)
T 2rpp_A 17 LEVCRQFQRG-------TCSRSDEECKFAHPPKSCQVE--NGRVIACFDSL-KGRCSRE-NCKYLHPPTHLKTQ 79 (89)
T ss_dssp ECBCHHHHHT-------CCCCCTTTSSSBCCCSSSCCB--TTBEEBCHHHH-HTCCCCT-TCCSBCCCHHHHHH
T ss_pred hhhchHHhcC-------CCCCCCCCCCCcCCCcccccc--CCceeeehhhh-hCcCCCC-CcceecCHHHHHHH
Confidence 4689999865 899998 99999986643221 23577899998 5999996 99999998877653
No 19
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.01 E-value=0.0049 Score=62.48 Aligned_cols=80 Identities=23% Similarity=0.510 Sum_probs=60.1
Q ss_pred ccCCC-CCCCC----CCCCCCCCCCCcCc------c------------------CCCCccccCCCCCCCCcCCCCCCCCC
Q psy3120 336 QCKRP-PRLCR----QGYACPQFHNSRDK------R------------------RSPRTFKYRSTPCPNVKHGDEWGEPA 386 (711)
Q Consensus 336 lC~~~-~G~C~----~G~~CpFAHn~kDl------R------------------R~P~~~kYkT~LCP~fkkG~~w~~~G 386 (711)
+|+++ .|.|+ .|..|.|+|+.... | -||. .-|++|..+ +|+ +..|
T Consensus 91 LCK~~l~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~---lLPeiC~~Y-kG~--g~~g 164 (229)
T 3u9g_A 91 LCKLNLLGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPF---FLPEICKSY-KGE--GRKQ 164 (229)
T ss_dssp CCHHHHTTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGG---GSCCBCTTC-CCS--SSCC
T ss_pred echhhhcCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCc---cCchHHHHh-CCC--CCCC
Confidence 45555 57883 46889999987321 0 1222 248999999 774 4678
Q ss_pred CCCCCCCcccccCccccccccccccccccccCccccCCCCCCCCCCCCcchh
Q psy3120 387 NCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTE 438 (711)
Q Consensus 387 ~Cp~GdsC~FAHg~~El~yHP~~YKTklC~~fq~tG~Cp~G~~C~FAHgeaE 438 (711)
.|.++++|..-| .|.+|. .|.|.+ ..|.-.|.-.+
T Consensus 165 ~C~~~~~C~kLH---------------IC~~Fl-~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 165 TCGQPQPCERLH---------------ICEHFT-RGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp SCSSSSCCCSBC---------------SCHHHH-TTCCCC-SSCSSCCCTTS
T ss_pred cCCCCCCCccee---------------ccchhh-cCCcCC-CCccCccCccC
Confidence 999999999988 699998 589999 79999998744
No 20
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=95.67 E-value=0.0077 Score=61.09 Aligned_cols=89 Identities=26% Similarity=0.474 Sum_probs=58.8
Q ss_pred cccccccCcccCC--CCCcccCCCCCCCCCCCCCCCCCC--Cc--------------ccccccccccccc--ccCCCCCC
Q psy3120 167 QCPLFLQHKCTQH--RPFTCFHWHFMNQRRRRPVRKRDG--SF--------------NYSPDTYCTKYDE--TTGLCPDG 226 (711)
Q Consensus 167 ~C~~f~qg~C~~g--~p~~C~FAH~~ed~RR~P~~r~dG--t~--------------nYst~~lCpkf~e--~tG~Cp~G 226 (711)
.|++|..|+|+++ ....|-|.|.....--....+..| .+ ..-| ++|..|.. ..|.|.++
T Consensus 91 LCK~~l~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLP-eiC~~YkG~g~~g~C~~~ 169 (229)
T 3u9g_A 91 LCKLNLLGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLP-EICKSYKGEGRKQTCGQP 169 (229)
T ss_dssp CCHHHHTTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSC-CBCTTCCCSSSCCSCSSS
T ss_pred echhhhcCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCc-hHHHHhCCCCCCCcCCCC
Confidence 4667788899543 236799999875432111000000 01 1245 69999931 23689999
Q ss_pred CCCCCCccCCCcccccccccccccccccccccccccccccccccCCCCCCCC
Q psy3120 227 DECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPD 278 (711)
Q Consensus 227 D~C~FAHs~~G~~E~~yHP~~YKTklCk~~~~~kG~C~K~G~~C~FAHg~~E 278 (711)
+.|...| +|.+|. +|.| |+ ..|.-+|...+
T Consensus 170 ~~C~kLH------------------IC~~Fl--~G~C-~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 170 QPCERLH------------------ICEHFT--RGNC-SY-LNCLRSHNLMD 199 (229)
T ss_dssp SCCCSBC------------------SCHHHH--TTCC-CC-SSCSSCCCTTS
T ss_pred CCCccee------------------ccchhh--cCCc-CC-CCccCccCccC
Confidence 9999999 499998 5899 58 89999997643
No 21
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=92.17 E-value=0.017 Score=50.05 Aligned_cols=65 Identities=28% Similarity=0.544 Sum_probs=45.9
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCcCccCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCcccccCcccccccccccccc
Q psy3120 334 TEQCKRPPRLCRQGYACPQFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIYKST 413 (711)
Q Consensus 334 TklC~~~~G~C~~G~~CpFAHn~kDlRR~P~~~kYkT~LCP~fkkG~~w~~~G~Cp~GdsC~FAHg~~El~yHP~~YKTk 413 (711)
.+.|+++. .|.+ .+|+|.|... ..+|++. ..|.. .+|.|+|-. .+
T Consensus 9 ~e~CKf~~-~Ctn-~~C~f~Hp~~------------~~~Cr~g---------~~C~~-~~C~f~HP~-----------~~ 53 (80)
T 2lhn_A 9 LEQCKFGT-HCTN-KRCKYRHARS------------HIMCREG---------ANCTR-IDCLFGHPI-----------NE 53 (80)
Confidence 35685543 5777 8999999641 2468865 37877 679999942 35
Q ss_pred ccccCccccCCCCCCCCCCCCcch
Q psy3120 414 KCNDVQQAGYCPRGVFCAFAHVDT 437 (711)
Q Consensus 414 lC~~fq~tG~Cp~G~~C~FAHgea 437 (711)
.|+++. .|.. ..|.|.|.+.
T Consensus 54 ~Crf~~---~C~n-~~C~F~Hp~g 73 (80)
T 2lhn_A 54 DCRFGV---NCKN-IYCLFRHPPG 73 (80)
Confidence 697775 5887 7999999643
No 22
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=92.16 E-value=0.046 Score=43.74 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=24.9
Q ss_pred cccccccccccccccccccccccCCCCCCC
Q psy3120 248 YKTCMCVHDTDARGLCVKNGAHCAFAHGNP 277 (711)
Q Consensus 248 YKTklCk~~~~~kG~C~K~G~~C~FAHg~~ 277 (711)
.+|.+|+.|.. .|+|+ +|..|+|.|..+
T Consensus 18 ~~~~iC~~FSa-yGwCp-~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSA-YGWCP-LGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHH-TCCCT-TGGGCSSBCCCC
T ss_pred cccchhhhccc-cccCC-CCCCCCccccCC
Confidence 68999999985 79997 999999999764
No 23
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=92.10 E-value=0.027 Score=45.05 Aligned_cols=28 Identities=25% Similarity=0.629 Sum_probs=25.7
Q ss_pred ccccccccCccccCCCCCCCCCCCCcch
Q psy3120 410 YKSTKCNDVQQAGYCPRGVFCAFAHVDT 437 (711)
Q Consensus 410 YKTklC~~fq~tG~Cp~G~~C~FAHgea 437 (711)
.+|.+|..|...|+||+|..|+|.|..+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 6789999999999999999999999854
No 24
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=89.62 E-value=0.055 Score=46.93 Aligned_cols=64 Identities=28% Similarity=0.496 Sum_probs=44.6
Q ss_pred ccccccccCcccCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCccCCCcccccccc
Q psy3120 166 EQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTGLCPDGDECPFLHRTAGDTERRYHL 245 (711)
Q Consensus 166 k~C~~f~qg~C~~g~p~~C~FAH~~ed~RR~P~~r~dGt~nYst~~lCpkf~e~tG~Cp~GD~C~FAHs~~G~~E~~yHP 245 (711)
++|.++. .|++- +|+|.|... . .+|+.+ ..|.+ .+|.|+|-
T Consensus 10 e~CKf~~--~Ctn~---~C~f~Hp~~-----------------~-~~Cr~g----~~C~~-~~C~f~HP----------- 50 (80)
T 2lhn_A 10 EQCKFGT--HCTNK---RCKYRHARS-----------------H-IMCREG----ANCTR-IDCLFGHP----------- 50 (80)
Confidence 5685543 68883 699999531 1 378755 57998 77999993
Q ss_pred cccccccccccccccccccccccccCCCCCCC
Q psy3120 246 RYYKTCMCVHDTDARGLCVKNGAHCAFAHGNP 277 (711)
Q Consensus 246 ~~YKTklCk~~~~~kG~C~K~G~~C~FAHg~~ 277 (711)
-.+.|+++. .|. + ..|.|.|-..
T Consensus 51 ---~~~~Crf~~----~C~-n-~~C~F~Hp~g 73 (80)
T 2lhn_A 51 ---INEDCRFGV----NCK-N-IYCLFRHPPG 73 (80)
Confidence 135698764 495 5 8999999543
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=80.71 E-value=0.35 Score=49.02 Aligned_cols=25 Identities=28% Similarity=0.840 Sum_probs=21.5
Q ss_pred ccccccccccCCCCCCCCCCCCccCCC
Q psy3120 211 TYCTKYDETTGLCPDGDECPFLHRTAG 237 (711)
Q Consensus 211 ~lCpkf~e~tG~Cp~GD~C~FAHs~~G 237 (711)
..|..| ..|.|++|++|+|.|..+.
T Consensus 71 ~~C~ff--akG~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 71 FFCLFF--AKGMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp SBCHHH--HTTCCSCGGGCSSBBSCCC
T ss_pred eEcCcc--ccCCCCCCCCCCccCCCCC
Confidence 489988 4699999999999998653
No 26
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=55.85 E-value=2.7 Score=36.66 Aligned_cols=8 Identities=25% Similarity=0.351 Sum_probs=4.3
Q ss_pred Hhhhhccc
Q psy3120 56 LYLQTATK 63 (711)
Q Consensus 56 iy~~~a~k 63 (711)
-|+.+|++
T Consensus 51 ~F~~~A~~ 58 (91)
T 3hd7_A 51 QFETSAAK 58 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 46656544
No 27
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=52.35 E-value=2.9 Score=42.34 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.0
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCcccccCcc
Q psy3120 370 STPCPNVKHGDEWGEPANCESGDLCQYCHTRT 401 (711)
Q Consensus 370 T~LCP~fkkG~~w~~~G~Cp~GdsC~FAHg~~ 401 (711)
+..|.+|.+| .|.+|++|+|.|...
T Consensus 70 ~~~C~ffakG-------~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 70 LFFCLFFAKG-------MCCLGPKCEYLHHIP 94 (240)
T ss_dssp CSBCHHHHTT-------CCSCGGGCSSBBSCC
T ss_pred CeEcCccccC-------CCCCCCCCCccCCCC
Confidence 4579999765 999999999999753
No 28
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=38.85 E-value=25 Score=30.75 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhhhhc--cccccccccccc
Q psy3120 35 ISALKCIQSQLRGDLEKVDKILYLQTA--TKCMVCEFVRKR 73 (711)
Q Consensus 35 L~~L~slQsQLr~dLE~VdkViy~~~a--~kC~~C~e~~~~ 73 (711)
|..|.+.++.+++.++.+++++-.+.. ..|.+|+-.-+.
T Consensus 19 l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 19 RNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTD 59 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCH
Confidence 566788899999999999998877764 569999765443
No 29
>2rh3_A Protein VIRC2; ribbon-helix-helix, crown GALL tumor, DNA binding P; 1.70A {Agrobacterium tumefaciens} SCOP: a.43.1.10
Probab=34.13 E-value=7.3 Score=35.72 Aligned_cols=20 Identities=55% Similarity=0.815 Sum_probs=18.3
Q ss_pred ccccCCCCCCCCCccccccc
Q psy3120 671 HFLSSRPPAPGFGTTADNLN 690 (711)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~ 690 (711)
-|||.||||||...+-|||-
T Consensus 3 vflSarpPap~VS~~yD~Li 22 (121)
T 2rh3_A 3 VFLSARPPAPEVSKIYDNLI 22 (121)
T ss_dssp EEEEECCCCTTSCHHHHHHT
T ss_pred eEeeCCCCCCcccHHHHHHH
Confidence 59999999999999999985
No 30
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=31.36 E-value=12 Score=37.90 Aligned_cols=32 Identities=34% Similarity=0.780 Sum_probs=2.3
Q ss_pred ccCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCcccccC
Q psy3120 359 KRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHT 399 (711)
Q Consensus 359 lRR~P~~~kYkT~LCP~fkkG~~w~~~G~Cp~GdsC~FAHg 399 (711)
+|..|..-.-+..+||.- ..|.+|.+|+|-|-
T Consensus 181 L~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 212 (223)
T 3v33_A 181 LRKKPLTLEHRKQPCPYG---------RKCTYGIKCRFFHP 212 (223)
T ss_dssp TBSCC------------------------------------
T ss_pred hccCCCCcccCCCCCCCC---------cccccCCcceecCC
Confidence 444443222235678853 36888888888553
No 31
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=24.90 E-value=25 Score=32.14 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhh----HHHHHHHHhhhh
Q psy3120 36 SALKCIQSQLRGD----LEKVDKILYLQT 60 (711)
Q Consensus 36 ~~L~slQsQLr~d----LE~VdkViy~~~ 60 (711)
.+|..+|+||-.= .+.||+|+-+..
T Consensus 33 d~l~~vq~evdeVk~IM~~NIdkvLeRGE 61 (119)
T 2kog_A 33 RRLQQTQAQVDEVVDIMRVNVDKVLERDQ 61 (119)
T ss_dssp SHHHHSSHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4555555554321 244566665543
No 32
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=22.69 E-value=18 Score=36.64 Aligned_cols=25 Identities=24% Similarity=0.588 Sum_probs=0.0
Q ss_pred cccccccCccccCCCCCCCCCCCCcchh
Q psy3120 411 KSTKCNDVQQAGYCPRGVFCAFAHVDTE 438 (711)
Q Consensus 411 KTklC~~fq~tG~Cp~G~~C~FAHgeaE 438 (711)
|..+|.+.. .|-||.+|.|.|.+..
T Consensus 191 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPYGR---KCTYGIKCRFFHPERP 215 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCCCc---ccccCCcceecCCccC
Confidence 455688776 5999999999998653
No 33
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=20.25 E-value=72 Score=29.13 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=5.0
Q ss_pred cCCCCCcccCc
Q psy3120 16 SGTPSIVCLSS 26 (711)
Q Consensus 16 ~~~~~~~~L~~ 26 (711)
..|..+..|..
T Consensus 58 eRGEkLd~L~~ 68 (119)
T 2kog_A 58 ERDQKLSELDD 68 (119)
T ss_dssp CCCCSSCCCCS
T ss_pred HcccHHHHHHH
Confidence 34555554433
Done!