RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3120
(711 letters)
>gnl|CDD|222059 pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 206
Score = 75.0 bits (185), Expect = 2e-15
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----- 128
SKY+ +I+ +I III +I I+ +I I I +++I++I +II +I I++
Sbjct: 81 SKYLFSLILGLIGIIISFLIAFIVSLIFGNITISELLLILLIGLIIALIFGAILLPLYYK 140
Query: 129 -------IIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
II+IIII +II II I I++LI
Sbjct: 141 FGYEKGRIILIIIIFLIIFIIFAIFKILNLILSLINNS 178
Score = 64.6 bits (158), Expect = 8e-12
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIII 117
+ + +++I++I +II +I I++ + II+IIII +II I
Sbjct: 101 AFIVSLIFGNITISELLLILLIGLIIALIFGAILLPLYYKFGYEKGRIILIIIIFLIIFI 160
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I I I+ +I+ +I +++III+++IIII I
Sbjct: 161 IFAIFKILNLILSLINNSSLLLIIILLVIIIILYII 196
Score = 60.0 bits (146), Expect = 3e-10
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 76 YIIIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+I +II +I I++ II+IIII +II II I I+ +I+ +I
Sbjct: 120 LLIGLIIALIFGAILLPLYYKFGYEKGRIILIIIIFLIIFIIFAIFKILNLILSLINNSS 179
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIII 149
+++III+++IIII+ II I + I
Sbjct: 180 LLLIIILLVIIIILYIISYFISLKIY 205
Score = 58.0 bits (141), Expect = 1e-09
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 32/118 (27%)
Query: 75 KYIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIII--------------- 114
KY+ I++II ++++I+I I I II++I+I+I++++
Sbjct: 12 KYLKILLIIFLLLLIVIFIFLNEDGSIFFIILLILILIMLVLTTFSYDEKSKWNKYLLTL 71
Query: 115 ------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ +I+ +I III +I I+ +I I I +++ L+ +
Sbjct: 72 PVSRKEIVLSKYLFSLILGLIGIIISFLIAFIVSLIFGNITISELLLILLIGLIIALI 129
Score = 57.6 bits (140), Expect = 2e-09
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 40/131 (30%)
Query: 70 VRKRSKYIIIIIIIIIIIIII-------IIIIIIIIIIIIIIII---------------- 106
++K K ++II ++++I+I I I II++I+I+I++++
Sbjct: 10 IKKYLKILLIIFLLLLIVIFIFLNEDGSIFFIILLILILIMLVLTTFSYDEKSKWNKYLL 69
Query: 107 -----------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+I+ +I III +I I+ +I I I +++I++I +II +I
Sbjct: 70 TLPVSRKEIVLSKYLFSLILGLIGIIISFLIAFIVSLIFGNITISELLLILLIGLIIALI 129
Query: 150 DLIFDFTFMYL 160
Y
Sbjct: 130 FGAILLPLYYK 140
Score = 54.9 bits (133), Expect = 2e-08
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 24/117 (20%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIII---------------------III---IIIII 104
F+ I II++I+I+I++++ I++ + +I
Sbjct: 29 FIFLNEDGSIFFIILLILILIMLVLTTFSYDEKSKWNKYLLTLPVSRKEIVLSKYLFSLI 88
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
+ +I III +I I+ +I I I +++I++I +II +I I L + F Y K
Sbjct: 89 LGLIGIIISFLIAFIVSLIFGNITISELLLILLIGLIIALIFGAILLPLYYKFGYEK 145
Score = 54.9 bits (133), Expect = 2e-08
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
K II+IIII +II II I I+ +I+ +I +++III+++IIII+ II I + I
Sbjct: 145 KGRIILIIIIFLIIFIIFAIFKILNLILSLINNSSLLLIIILLVIIIILYIISYFISLKI 204
Query: 135 I 135
Sbjct: 205 Y 205
Score = 54.6 bits (132), Expect = 2e-08
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
F ++ + I+IIII +II II I I+ +I+ +I +++III+++IIII+ II I
Sbjct: 141 FGYEKGRIILIIIIFLIIFIIFAIFKILNLILSLINNSSLLLIIILLVIIIILYIISYFI 200
Query: 129 IIIII 133
+ I
Sbjct: 201 SLKIY 205
Score = 53.0 bits (128), Expect = 6e-08
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
Y II+IIII +II II I I+ +I+ +I +++III+++IIII+ II I
Sbjct: 142 GYEKGRIILIIIIFLIIFIIFAIFKILNLILSLINNSSLLLIIILLVIIIILYIISYFIS 201
Query: 135 IIII 138
+ I
Sbjct: 202 LKIY 205
Score = 52.3 bits (126), Expect = 1e-07
Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 31/108 (28%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------- 128
+I + I++II ++++I+I I + I II++I+I+I+++
Sbjct: 7 FYLIKKYLKILLIIFLLLLIVIFIFLNEDGSIFFIILLILILIMLVLTTFSYDEKSKWNK 66
Query: 129 -----------------IIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+ +I+ +I III +I I+ LIF +
Sbjct: 67 YLLTLPVSRKEIVLSKYLFSLILGLIGIIISFLIAFIVSLIFGNITIS 114
Score = 33.4 bits (77), Expect = 0.24
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 111
+ + K I+ +I +++III+++IIII+ II I + I
Sbjct: 158 IFIIFAIFKILNLILSLINNSSLLLIIILLVIIIILYIISYFISLKIY 205
Score = 28.8 bits (65), Expect = 8.9
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 120 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+I + I++II ++++I+I I + + F + +
Sbjct: 7 FYLIKKYLKILLIIFLLLLIVIFIFLNEDGSIFFIILLILI 47
>gnl|CDD|221739 pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 230
Score = 59.3 bits (144), Expect = 9e-10
Identities = 11/102 (10%), Positives = 64/102 (62%), Gaps = 15/102 (14%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIIII 121
+K ++++I+ ++ ++++++ +I +++ +++++++ ++ +++I++I+
Sbjct: 94 AKLLVLLILSLLASLLLLLLSLIAGLLLGGSGFSLSLLLGALLLLLLLSLLALLLILLIL 153
Query: 122 IIIIII---IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ +++ + I I +++I++ +++ + + L+F ++++ L
Sbjct: 154 FLSLLLRNSAVAIGIGLLLILLGLLLGSLPLWLLFPWSYLPL 195
Score = 54.3 bits (131), Expect = 4e-08
Identities = 11/123 (8%), Positives = 56/123 (45%), Gaps = 33/123 (26%)
Query: 67 CEFVR-KRSKYIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIII 119
E ++ KR+K +I++I+ +++ ++ +++ + +++ + + + ++I
Sbjct: 2 AELLKLKRTKIFLILLILPLLLALLALLLFGVNGDTGLSPGSLLLSSFSFLSALFLPLLI 61
Query: 120 IIIIIIII--------------------------IIIIIIIIIIIIIIIIIIIIIIDLIF 153
I+ +++ +++++I+ ++ ++++++ +I L+
Sbjct: 62 AILASLLVSREFKNGTIKLLLSLPISRGKIFLAKLLVLLILSLLASLLLLLLSLIAGLLL 121
Query: 154 DFT 156
+
Sbjct: 122 GGS 124
Score = 45.4 bits (108), Expect = 3e-05
Identities = 6/100 (6%), Positives = 51/100 (51%), Gaps = 26/100 (26%)
Query: 76 YIIIIIIIIIIIIIII--------------------------IIIIIIIIIIIIIIIIII 109
+ + ++I I+ +++ +++++I+ ++ ++++++
Sbjct: 54 ALFLPLLIAILASLLVSREFKNGTIKLLLSLPISRGKIFLAKLLVLLILSLLASLLLLLL 113
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+I +++ + +++ +++++++ ++ +++I++I+
Sbjct: 114 SLIAGLLLGGSGFSLSLLLGALLLLLLLSLLALLLILLIL 153
Score = 44.3 bits (105), Expect = 9e-05
Identities = 14/98 (14%), Positives = 52/98 (53%), Gaps = 23/98 (23%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIIIIIIIIII-- 129
+++++++ ++ +++I++I+ + +++ + I I +++I++ +++ + + ++
Sbjct: 133 GALLLLLLLSLLALLLILLILFLSLLLRNSAVAIGIGLLLILLGLLLGSLPLWLLFPWSY 192
Query: 130 ------------------IIIIIIIIIIIIIIIIIIII 149
+ III +I+I+I+ II +I
Sbjct: 193 LPLIVLLSLSLNGTLLSSGLSIIIALIVILILFIIFLI 230
Score = 41.2 bits (97), Expect = 9e-04
Identities = 14/75 (18%), Positives = 44/75 (58%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ R+ + I I +++I++ +++ + + ++ + +I+++ + + ++ + II
Sbjct: 156 SLLLRNSAVAIGIGLLLILLGLLLGSLPLWLLFPWSYLPLIVLLSLSLNGTLLSSGLSII 215
Query: 129 IIIIIIIIIIIIIII 143
I +I+I+I+ II +I
Sbjct: 216 IALIVILILFIIFLI 230
>gnl|CDD|224196 COG1277, NosY, ABC-type transport system involved in multi-copper
enzyme maturation, permease component [General function
prediction only].
Length = 278
Score = 58.2 bits (141), Expect = 3e-09
Identities = 18/98 (18%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIIIIIIIIIII 123
K++ +++I+III+I I ++ +++ I +++ + ++ ++++ I ++
Sbjct: 108 GKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLVLLSISLL 167
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
I + + +++ II++++ II LI F + L
Sbjct: 168 ISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLI 205
Score = 46.7 bits (111), Expect = 2e-05
Identities = 9/70 (12%), Positives = 36/70 (51%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
RSK I++ I ++ I++++ + ++I+ ++ +++ + + ++ + ++
Sbjct: 15 YLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFLSSVSLVFSFFLPLL 74
Query: 131 IIIIIIIIII 140
I++ +I
Sbjct: 75 AILLGADLIS 84
Score = 46.7 bits (111), Expect = 2e-05
Identities = 11/110 (10%), Positives = 42/110 (38%), Gaps = 23/110 (20%)
Query: 76 YIIIIIIIIIIIIIIIIII---------------------III--IIIIIIIIIIIIIII 112
+ + ++ I++ +I I++ + +++I+III+I
Sbjct: 65 LVFSFFLPLLAILLGADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILIS 124
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
I ++ ++++ + I +++ + ++ +++ I
Sbjct: 125 FISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLVLLSISLLISSLFSS 174
Score = 46.3 bits (110), Expect = 3e-05
Identities = 13/85 (15%), Positives = 45/85 (52%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ I +++ + ++ ++++ I ++I + + +++ II++++ II +I+
Sbjct: 138 PGNVSSISRLLLFLGSSLLYGLVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLIL 197
Query: 136 IIIIIIIIIIIIIIDLIFDFTFMYL 160
+ I +++I I ++ + +YL
Sbjct: 198 LFISVLLIGIAPTLNTLSLLLPLYL 222
Score = 44.8 bits (106), Expect = 7e-05
Identities = 14/93 (15%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
F S +++ + ++ ++++ I ++I + + +++ II++++ II +I
Sbjct: 137 FPGNVSSISRLLLFLGSSLLYGLVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLI 196
Query: 129 IIIIIIIIIIIII---IIIIIIIIDLIFDFTFM 158
++ I +++I I + +++ + L+ + F
Sbjct: 197 LLFISVLLIGIAPTLNTLSLLLPLYLLAELAFT 229
Score = 44.8 bits (106), Expect = 8e-05
Identities = 7/81 (8%), Positives = 38/81 (46%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+K + + I++ I ++ I++++ + ++I+ ++ +++ + + ++
Sbjct: 8 AQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFLSSVSLVF 67
Query: 130 IIIIIIIIIIIIIIIIIIIID 150
+ ++ I++ +I +
Sbjct: 68 SFFLPLLAILLGADLISSEFE 88
Score = 44.4 bits (105), Expect = 1e-04
Identities = 16/135 (11%), Positives = 53/135 (39%), Gaps = 42/135 (31%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIII-------------------IIIIIIII 108
+++R + YI++ I ++ I++++ + ++I+ + + +
Sbjct: 14 KYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFLSSVSLVFSFFLPL 73
Query: 109 IIIIIIIIII---------------------III--IIIIIIIIIIIIIIIIIIIIIIII 145
+ I++ +I I++ + +++I+III+I I ++ +++
Sbjct: 74 LAILLGADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLL 133
Query: 146 IIIIDLIFDFTFMYL 160
+ L
Sbjct: 134 LFGFPGNVSSISRLL 148
Score = 43.6 bits (103), Expect = 2e-04
Identities = 15/85 (17%), Positives = 46/85 (54%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
Y ++++ I ++I + + +++ II++++ II +I++ I +++I I + + +
Sbjct: 157 YGLVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSL 216
Query: 136 IIIIIIIIIIIIIIDLIFDFTFMYL 160
++ + ++ + I L F+ L
Sbjct: 217 LLPLYLLAELAFTILLQSGFSDSIL 241
Score = 39.4 bits (92), Expect = 0.004
Identities = 20/106 (18%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
++ S +++ II++++ II +I++ I +++I I + + +++ + ++ +
Sbjct: 167 LISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYLLAEL 226
Query: 125 IIII-----------------IIIIIIIIIIIIIIIIIIIIIDLIF 153
I ++ I+I+II I+I + I LIF
Sbjct: 227 AFTILLQSGFSDSILTLNESLLLAWFNILILIIYILIFLSIAYLIF 272
Score = 39.4 bits (92), Expect = 0.004
Identities = 12/83 (14%), Positives = 42/83 (50%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++ I ++I + + +++ II++++ II +I++ I +++I I + + +++
Sbjct: 160 VLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLP 219
Query: 136 IIIIIIIIIIIIIIDLIFDFTFM 158
+ ++ + I++ D
Sbjct: 220 LYLLAELAFTILLQSGFSDSILT 242
Score = 38.2 bits (89), Expect = 0.009
Identities = 11/84 (13%), Positives = 41/84 (48%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ I ++I + + +++ II++++ II +I++ I +++I I + + +++ +
Sbjct: 161 LLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPL 220
Query: 136 IIIIIIIIIIIIIIDLIFDFTFMY 159
++ + I++ +
Sbjct: 221 YLLAELAFTILLQSGFSDSILTLN 244
Score = 36.7 bits (85), Expect = 0.030
Identities = 10/83 (12%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------I 129
+ I++I + I++ I ++ I++++ + ++I+ ++ +
Sbjct: 1 LSNILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFL 60
Query: 130 IIIIIIIIIIIIIIIIIIIIDLI 152
+ ++ + ++ I++ DLI
Sbjct: 61 SSVSLVFSFFLPLLAILLGADLI 83
Score = 36.7 bits (85), Expect = 0.032
Identities = 12/80 (15%), Positives = 40/80 (50%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
++I + + +++ II++++ II +I++ I +++I I + + +++ + ++
Sbjct: 166 LLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYLLAE 225
Query: 138 IIIIIIIIIIIIDLIFDFTF 157
+ I++ D I
Sbjct: 226 LAFTILLQSGFSDSILTLNE 245
Score = 35.5 bits (82), Expect = 0.081
Identities = 11/68 (16%), Positives = 37/68 (54%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S ++I + + +++ II++++ II +I++ I +++I I + + +++ + +
Sbjct: 163 SISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYL 222
Query: 134 IIIIIIII 141
+ + I
Sbjct: 223 LAELAFTI 230
Score = 35.1 bits (81), Expect = 0.094
Identities = 11/85 (12%), Positives = 41/85 (48%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+I + + +++ II++++ II +I++ I +++I I + + +++ + ++
Sbjct: 166 LLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYLLAE 225
Query: 136 IIIIIIIIIIIIIIDLIFDFTFMYL 160
+ I++ L + + +
Sbjct: 226 LAFTILLQSGFSDSILTLNESLLLA 250
Score = 34.0 bits (78), Expect = 0.25
Identities = 11/82 (13%), Positives = 39/82 (47%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ + +++ II++++ II +I++ I +++I I + + +++ + ++ +
Sbjct: 170 SLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYLLAELAFT 229
Query: 138 IIIIIIIIIIIIDLIFDFTFMY 159
I++ I+ L +
Sbjct: 230 ILLQSGFSDSILTLNESLLLAW 251
>gnl|CDD|221975 pfam13197, DUF4013, Protein of unknown function (DUF4013). This is
a family of uncharacterized proteins that is found in
archaea and bacteria.
Length = 167
Score = 55.3 bits (134), Expect = 6e-09
Identities = 15/116 (12%), Positives = 51/116 (43%), Gaps = 41/116 (35%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIIIIIII 122
K +I ++ +II III+ ++ +++ + +++I+++I+ I+I +++
Sbjct: 52 KAFVIGLVYLIIPIIILALLALLVGFAASASPGAAGLGVFGLLLILLLILAILIALLLPA 111
Query: 123 III-----------------------------IIIIIIIIIIIIIIIIIIIIIIII 149
+ ++ +++I+I +++ ++ +I+ I
Sbjct: 112 ALARYARTGSFGAAFDFGEIFKMISRIGWLAYLLAFLVVIVIGLVVGLLGALIVGI 167
Score = 53.0 bits (128), Expect = 4e-08
Identities = 10/65 (15%), Positives = 35/65 (53%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ +I ++ +II III+ ++ +++ + + +++I+++I+ I+I +++
Sbjct: 51 LKAFVIGLVYLIIPIIILALLALLVGFAASASPGAAGLGVFGLLLILLLILAILIALLLP 110
Query: 137 IIIII 141
+
Sbjct: 111 AALAR 115
Score = 53.0 bits (128), Expect = 4e-08
Identities = 10/65 (15%), Positives = 35/65 (53%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ +I ++ +II III+ ++ +++ + + +++I+++I+ I+I +++
Sbjct: 51 LKAFVIGLVYLIIPIIILALLALLVGFAASASPGAAGLGVFGLLLILLLILAILIALLLP 110
Query: 138 IIIII 142
+
Sbjct: 111 AALAR 115
Score = 53.0 bits (128), Expect = 4e-08
Identities = 10/65 (15%), Positives = 35/65 (53%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ +I ++ +II III+ ++ +++ + + +++I+++I+ I+I +++
Sbjct: 51 LKAFVIGLVYLIIPIIILALLALLVGFAASASPGAAGLGVFGLLLILLLILAILIALLLP 110
Query: 139 IIIII 143
+
Sbjct: 111 AALAR 115
Score = 53.0 bits (128), Expect = 4e-08
Identities = 10/65 (15%), Positives = 35/65 (53%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ +I ++ +II III+ ++ +++ + + +++I+++I+ I+I +++
Sbjct: 51 LKAFVIGLVYLIIPIIILALLALLVGFAASASPGAAGLGVFGLLLILLLILAILIALLLP 110
Query: 140 IIIII 144
+
Sbjct: 111 AALAR 115
Score = 53.0 bits (128), Expect = 4e-08
Identities = 10/65 (15%), Positives = 35/65 (53%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ +I ++ +II III+ ++ +++ + + +++I+++I+ I+I +++
Sbjct: 51 LKAFVIGLVYLIIPIIILALLALLVGFAASASPGAAGLGVFGLLLILLLILAILIALLLP 110
Query: 141 IIIII 145
+
Sbjct: 111 AALAR 115
Score = 53.0 bits (128), Expect = 4e-08
Identities = 10/65 (15%), Positives = 35/65 (53%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ +I ++ +II III+ ++ +++ + + +++I+++I+ I+I +++
Sbjct: 51 LKAFVIGLVYLIIPIIILALLALLVGFAASASPGAAGLGVFGLLLILLLILAILIALLLP 110
Query: 142 IIIII 146
+
Sbjct: 111 AALAR 115
Score = 53.0 bits (128), Expect = 4e-08
Identities = 10/65 (15%), Positives = 35/65 (53%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ +I ++ +II III+ ++ +++ + + +++I+++I+ I+I +++
Sbjct: 51 LKAFVIGLVYLIIPIIILALLALLVGFAASASPGAAGLGVFGLLLILLLILAILIALLLP 110
Query: 143 IIIII 147
+
Sbjct: 111 AALAR 115
Score = 53.0 bits (128), Expect = 4e-08
Identities = 10/65 (15%), Positives = 35/65 (53%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ +I ++ +II III+ ++ +++ + + +++I+++I+ I+I +++
Sbjct: 51 LKAFVIGLVYLIIPIIILALLALLVGFAASASPGAAGLGVFGLLLILLLILAILIALLLP 110
Query: 144 IIIII 148
+
Sbjct: 111 AALAR 115
Score = 53.0 bits (128), Expect = 4e-08
Identities = 10/65 (15%), Positives = 35/65 (53%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ +I ++ +II III+ ++ +++ + + +++I+++I+ I+I +++
Sbjct: 51 LKAFVIGLVYLIIPIIILALLALLVGFAASASPGAAGLGVFGLLLILLLILAILIALLLP 110
Query: 145 IIIII 149
+
Sbjct: 111 AALAR 115
Score = 52.6 bits (127), Expect = 6e-08
Identities = 14/109 (12%), Positives = 47/109 (43%), Gaps = 32/109 (29%)
Query: 77 IIIIIIIIIIIIIIIIII--------------------------------IIIIIIIIII 104
++I ++++I I+ ++++ + +I ++
Sbjct: 1 LLIGGLLLLIPIVGLLLLLGYIVRVLRNTARGNSDPLPEWDDWGDLLVDGLKAFVIGLVY 60
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+II III+ ++ +++ + + +++I+++I+ I+I L+
Sbjct: 61 LIIPIIILALLALLVGFAASASPGAAGLGVFGLLLILLLILAILIALLL 109
Score = 49.2 bits (118), Expect = 9e-07
Identities = 11/110 (10%), Positives = 45/110 (40%), Gaps = 31/110 (28%)
Query: 80 IIIIIIIIIIIIIIIIIII-------------------------------IIIIIIIIII 108
++I ++++I I+ +++++ + +I ++
Sbjct: 1 LLIGGLLLLIPIVGLLLLLGYIVRVLRNTARGNSDPLPEWDDWGDLLVDGLKAFVIGLVY 60
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+II III+ ++ +++ + + +++I+++I+ ++
Sbjct: 61 LIIPIIILALLALLVGFAASASPGAAGLGVFGLLLILLLILAILIALLLP 110
Score = 47.6 bits (114), Expect = 3e-06
Identities = 13/108 (12%), Positives = 42/108 (38%), Gaps = 31/108 (28%)
Query: 84 IIIIIIIIIIIIIIIIIII-------------------------------IIIIIIIIII 112
++I ++++I I+ +++++ + +I ++
Sbjct: 1 LLIGGLLLLIPIVGLLLLLGYIVRVLRNTARGNSDPLPEWDDWGDLLVDGLKAFVIGLVY 60
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+II III+ ++ +++ + + +++I+ LI L
Sbjct: 61 LIIPIIILALLALLVGFAASASPGAAGLGVFGLLLILLLILAILIALL 108
Score = 34.5 bits (80), Expect = 0.081
Identities = 4/32 (12%), Positives = 18/32 (56%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIII 104
+ ++ +++I+I +++ ++ +I+ I
Sbjct: 136 SRIGWLAYLLAFLVVIVIGLVVGLLGALIVGI 167
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 58.3 bits (141), Expect = 7e-09
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------III 128
Y+I + I I + + ++ I ++II+I + +I ++ ++ + I
Sbjct: 102 YVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINS 161
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
II I+ III++I II+ + F
Sbjct: 162 IITILKIIILLIFIILGLFAFGFSNGNLFA 191
Score = 55.2 bits (133), Expect = 7e-08
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---- 131
++ ++ +I + I I + + ++ I ++II+I + +I ++ ++ +
Sbjct: 96 WLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKA 155
Query: 132 ---IIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
I II I+ III++I II +F F F F
Sbjct: 156 SAKINSIITILKIIILLIFIILGLFAFGFSNGNLF 190
Score = 54.4 bits (131), Expect = 1e-07
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 74 SKYIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+II+I + +I ++ ++ + I II I+ III++I II+ + +
Sbjct: 130 GPLLIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNL 189
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDFT 156
I+ I+ F FT
Sbjct: 190 FAPFNPGGGSFGGILAAILLAFFAFT 215
Score = 50.9 bits (122), Expect = 2e-06
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++ I ++II+I + +I ++ ++ + I I II I+ III++I II+ +
Sbjct: 126 LLSIGPLLIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFS 185
Query: 139 IIIIIIIIIIIDLIFDFTFM 158
+ F
Sbjct: 186 NGNLFAPFNPGGGSFGGILA 205
Score = 49.8 bits (119), Expect = 4e-06
Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 26/109 (23%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-- 129
K S I II I+ III++I II+ + + I+ I++
Sbjct: 154 KASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFA 213
Query: 130 ------------------------IIIIIIIIIIIIIIIIIIIIDLIFD 154
II+ ++I++I+ I+ ++I+ ++
Sbjct: 214 FTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPA 262
Score = 49.8 bits (119), Expect = 4e-06
Identities = 13/111 (11%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------------I 121
II +I++++ + I ++ + + +I +++ + ++++ +
Sbjct: 345 IISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPL 404
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFL 172
I I+ I+ +++++ + + +++ + LI +YL + L
Sbjct: 405 IPILGIVAVLLLLYALYASGLPPLLLGVILIAGGIIIYLLVYLGLGRLLSA 455
Score = 44.8 bits (106), Expect = 1e-04
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 21/109 (19%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
R I II I+ III++I II+ + + I+ I++
Sbjct: 151 RGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLA 210
Query: 133 II---------------------IIIIIIIIIIIIIIIDLIFDFTFMYL 160
I II+ ++I++I+ ++ + +
Sbjct: 211 FFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGV 259
Score = 42.8 bits (101), Expect = 5e-04
Identities = 13/77 (16%), Positives = 37/77 (48%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
KR+ II+ ++I++I+ I+ ++I+ ++ + + + + III
Sbjct: 231 KRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIII 290
Query: 132 IIIIIIIIIIIIIIIII 148
I+ ++ + ++ I+
Sbjct: 291 AILALLSLFGSLLAWIL 307
Score = 42.5 bits (100), Expect = 7e-04
Identities = 13/80 (16%), Positives = 37/80 (46%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
V+ + I II+ ++I++I+ I+ ++I+ ++ + + + +
Sbjct: 227 VKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWG 286
Query: 130 IIIIIIIIIIIIIIIIIIII 149
III I+ ++ + ++ I
Sbjct: 287 AIIIAILALLSLFGSLLAWI 306
Score = 41.3 bits (97), Expect = 0.001
Identities = 11/72 (15%), Positives = 34/72 (47%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
II+ ++I++I+ I+ ++I+ ++ + + + + III I+ +
Sbjct: 236 RAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILAL 295
Query: 138 IIIIIIIIIIII 149
+ + ++ I+
Sbjct: 296 LSLFGSLLAWIL 307
Score = 40.9 bits (96), Expect = 0.002
Identities = 11/75 (14%), Positives = 34/75 (45%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
II+ ++I++I+ I+ ++I+ ++ + + + + III I+ +
Sbjct: 236 RAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILAL 295
Query: 142 IIIIIIIIDLIFDFT 156
+ + ++ I +
Sbjct: 296 LSLFGSLLAWILAVS 310
Score = 40.9 bits (96), Expect = 0.002
Identities = 11/77 (14%), Positives = 38/77 (49%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
II+ ++I++I+ I+ ++I+ ++ + + + + III I+ ++
Sbjct: 238 IILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLS 297
Query: 137 IIIIIIIIIIIIIDLIF 153
+ ++ I+ + +++
Sbjct: 298 LFGSLLAWILAVSRVLY 314
Score = 36.7 bits (85), Expect = 0.040
Identities = 16/128 (12%), Positives = 46/128 (35%), Gaps = 29/128 (22%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIII-----------------------------II 104
III I+ ++ + ++ I+ +I
Sbjct: 279 LFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVI 338
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
+I+ II +I++++ + I ++ + + +I +++ + + ++ + FR
Sbjct: 339 ALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFR 398
Query: 165 VEQCPLFL 172
+ PL
Sbjct: 399 LPLAPLIP 406
Score = 33.6 bits (77), Expect = 0.36
Identities = 15/115 (13%), Positives = 37/115 (32%), Gaps = 25/115 (21%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIII-------------------------IIIIIIIIIII 108
I+ +I III+ + + + + ++
Sbjct: 42 GLAPAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLLA 101
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+I + I I + + ++ I ++II+I + +I L+ +K
Sbjct: 102 YVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKAS 156
Score = 32.8 bits (75), Expect = 0.64
Identities = 9/62 (14%), Positives = 24/62 (38%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+K+ ++ + + +I I + + I+ +I III+ + + +
Sbjct: 11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSS 70
Query: 131 II 132
I
Sbjct: 71 AI 72
Score = 32.8 bits (75), Expect = 0.66
Identities = 11/70 (15%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIIIIII 116
F + I I+ I+ +++++ + +I+I III +++ + + ++
Sbjct: 396 PFRLPLAPLIPILGIVAVLLLLYALYASGLPPLLLGVILIAGGIIIYLLVYLGLGRLLSA 455
Query: 117 IIIIIIIIII 126
I+I +
Sbjct: 456 ILIAEAKAGL 465
Score = 32.1 bits (73), Expect = 1.1
Identities = 9/65 (13%), Positives = 25/65 (38%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ K + + ++ + + +I I + + I+ +I III+ + +
Sbjct: 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAE 67
Query: 131 IIIII 135
+ I
Sbjct: 68 LSSAI 72
Score = 31.3 bits (71), Expect = 1.7
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ + + +I I + + I+ +I III+ + L +
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSY 65
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
Score = 31.3 bits (71), Expect = 2.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ + + +I I + + I+ +I III+ + + + I
Sbjct: 20 LTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAI 72
>gnl|CDD|218678 pfam05656, DUF805, Protein of unknown function (DUF805). This
family consists of several bacterial proteins of unknown
function.
Length = 112
Score = 53.8 bits (130), Expect = 7e-09
Identities = 12/88 (13%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----- 127
RS+Y ++ I+I ++++I+ ++ ++ +++ +I + I I + + +
Sbjct: 11 RSEYWWFVLFNILITLVLLILAALLSGSSSLLSGGGLLLGLISLAIFIPSLAVTVRRLHD 70
Query: 128 -----IIIIIIIIIIIIIIIIIIIIIID 150
+++++I +I I++++++++
Sbjct: 71 TGRSGWWLLLLLIPLIGFIVLLVLLLLP 98
Score = 48.0 bits (115), Expect = 7e-07
Identities = 10/81 (12%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------I 133
++ I+I ++++I+ ++ ++ +++ +I + I I + + +
Sbjct: 18 VLFNILITLVLLILAALLSGSSSLLSGGGLLLGLISLAIFIPSLAVTVRRLHDTGRSGWW 77
Query: 134 IIIIIIIIIIIIIIIIDLIFD 154
+++++I +I I++++ L+
Sbjct: 78 LLLLLIPLIGFIVLLVLLLLP 98
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 57.5 bits (140), Expect = 1e-08
Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 61 ATKCMVCEFVRKR--SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
+ E + +R SK + I+ IIIII +I + +I II+ ++ I II
Sbjct: 95 LGVKTIPETLLERYYSKGVRILSAIIIIIFLIGYLAAQLIGGGIILSTLLGIPYWTGAII 154
Query: 119 IIIIIIIIIII----------IIIIIIIIIIIIIIIIIIIIDL 151
+ +I+I+ + +I ++++I +I++ + +
Sbjct: 155 LAVIVILYTVFGGLRAVAWTDVIQGVLMLIGVILLAFFALSKV 197
Score = 39.8 bits (94), Expect = 0.004
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 21/94 (22%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIII------------------IIIIIIIIIIIIIIII 118
I +I + ++++ + + + I+ IIIII +I
Sbjct: 68 ISAGWYVIGAALGLLLLALFFAPRLRRLGVKTIPETLLERYYSKGVRILSAIIIIIFLIG 127
Query: 119 IIIIIII---IIIIIIIIIIIIIIIIIIIIIIII 149
+ +I II+ ++ I II+ +I+I+
Sbjct: 128 YLAAQLIGGGIILSTLLGIPYWTGAIILAVIVIL 161
Score = 39.1 bits (92), Expect = 0.007
Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIII 126
Y+I + ++++ + + + + I ++ I+ IIIII +I +
Sbjct: 73 YVIGAALGLLLLALFFAPRLRRLGVKTIPETLLERYYSKGVRILSAIIIIIFLIGYLAAQ 132
Query: 127 IIIIIIII----------IIIIIIIIIIIIIII 149
+I II+ II+ +I+I+ +
Sbjct: 133 LIGGGIILSTLLGIPYWTGAIILAVIVILYTVF 165
Score = 37.1 bits (87), Expect = 0.029
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIII 136
I +I + ++++ + + + + I ++ + I+ IIIII +I
Sbjct: 68 ISAGWYVIGAALGLLLLALFFAPRLRRLGVKTIPETLLERYYSKGVRILSAIIIIIFLIG 127
Query: 137 IIIIIIIIIIIIIDLIFDFTFMY 159
+ +I II+ + +
Sbjct: 128 YLAAQLIGGGIILSTLLGIPYWT 150
Score = 37.1 bits (87), Expect = 0.030
Identities = 6/96 (6%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------------ 115
+ +++ ++ +++ + II+++ + ++ + ++
Sbjct: 358 GRIATVVVGVLALLLALFPPSIILLLSLAAGLLAAALFPPLLLGLFWKRATKAGAIASLI 417
Query: 116 --IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+I+ ++ +++ + I I +++ +I+ ++
Sbjct: 418 VGLIVTLVWLLLGLASPFGIDPAIPGLLVSLIVFVV 453
Score = 35.6 bits (83), Expect = 0.081
Identities = 12/148 (8%), Positives = 43/148 (29%), Gaps = 64/148 (43%)
Query: 76 YIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIIII-------------- 107
II+ +I+I+ + ++++I +I++ +
Sbjct: 150 TGAIILAVIVILYTVFGGLRAVAWTDVIQGVLMLIGVILLAFFALSKVGGGGLSALAAAL 209
Query: 108 ----------------IIIIIIIIIIIIIII--------------------IIIIIIIII 131
I+ + ++ ++ +++ ++I+
Sbjct: 210 PALLLSLGPGGGPGWGTILGLFLLGGFGVLANPQIVQRFLAAKDEKTARRGLLLAGLLIL 269
Query: 132 IIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+I + +I + + DL +
Sbjct: 270 LIGFLAALIGLAARALFPDLEGNPDLAL 297
Score = 33.3 bits (77), Expect = 0.45
Identities = 9/101 (8%), Positives = 42/101 (41%), Gaps = 15/101 (14%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------ 122
K + + I +++ ++ +++ + II+++ + ++ + +++
Sbjct: 353 KLLRVGRIATVVVGVLALLLALFPPSIILLLSLAAGLLAAALFPPLLLGLFWKRATKAGA 412
Query: 123 ---IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+I+ +I+ ++ +++ + I I L+ +
Sbjct: 413 IASLIVGLIVTLVWLLLGLASPFGIDPAIPGLLVSLIVFVV 453
>gnl|CDD|217187 pfam02687, FtsX, FtsX-like permease family. This is a family of
predicted permeases and hypothetical transmembrane
proteins. Buchnera aphidicola lolC has been shown to
transport lipids targeted to the outer membrane across
the inner membrane. Both lolC and Streptococcus
cristatus tptD have been shown to require ATP. This
region contains three transmembrane helices.
Length = 121
Score = 53.4 bits (129), Expect = 1e-08
Identities = 9/76 (11%), Positives = 41/76 (53%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
K I ++++ +++ +I ++ +++ ++ ++ I + + + I I+I++ +
Sbjct: 39 SKKQIFKLLLLEALLLGLIGSLLGLLLGFLLAYLLSSAIASFLGFSLPLSIDPIVILLSL 98
Query: 133 IIIIIIIIIIIIIIII 148
++I++I ++ ++
Sbjct: 99 LLILLIALLASLLPAR 114
Score = 51.5 bits (124), Expect = 6e-08
Identities = 8/72 (11%), Positives = 40/72 (55%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I ++++ +++ +I ++ +++ ++ ++ I + + + I I+I++ +++I+
Sbjct: 43 IFKLLLLEALLLGLIGSLLGLLLGFLLAYLLSSAIASFLGFSLPLSIDPIVILLSLLLIL 102
Query: 138 IIIIIIIIIIII 149
+I ++ ++
Sbjct: 103 LIALLASLLPAR 114
Score = 51.1 bits (123), Expect = 7e-08
Identities = 10/77 (12%), Positives = 42/77 (54%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
K +++ +++ +I ++ +++ ++ ++ I + + + I I+I++ +++I++I
Sbjct: 45 KLLLLEALLLGLIGSLLGLLLGFLLAYLLSSAIASFLGFSLPLSIDPIVILLSLLLILLI 104
Query: 135 IIIIIIIIIIIIIIIDL 151
++ ++ I+ I
Sbjct: 105 ALLASLLPARRILKISP 121
Score = 50.7 bits (122), Expect = 1e-07
Identities = 9/80 (11%), Positives = 44/80 (55%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
K+ + ++++ +++ +I ++ +++ ++ ++ I + + + I I+I++
Sbjct: 38 ASKKQIFKLLLLEALLLGLIGSLLGLLLGFLLAYLLSSAIASFLGFSLPLSIDPIVILLS 97
Query: 130 IIIIIIIIIIIIIIIIIIII 149
+++I++I ++ ++ I+
Sbjct: 98 LLLILLIALLASLLPARRIL 117
Score = 45.3 bits (108), Expect = 8e-06
Identities = 11/106 (10%), Positives = 51/106 (48%), Gaps = 32/106 (30%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIII-------------------IIIIIIIIIIIIIIIIII 116
++ ++I+++ ++I++ ++ I I I ++++ +++ +I +
Sbjct: 1 LLLSVLILLLALLILLNLLSISISERRREIGILKALGASKKQIFKLLLLEALLLGLIGSL 60
Query: 117 IIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIII 149
+ +++ ++ ++ + I I+I++ +++I++I +
Sbjct: 61 LGLLLGFLLAYLLSSAIASFLGFSLPLSIDPIVILLSLLLILLIAL 106
Score = 44.5 bits (106), Expect = 1e-05
Identities = 11/105 (10%), Positives = 51/105 (48%), Gaps = 32/105 (30%)
Query: 77 IIIIIIIIIIIIIIIIIIIII-------------------IIIIIIIIIIIIIIIIIIII 117
+ ++I+++ ++I++ ++ I I I ++++ +++ +I ++
Sbjct: 3 LSVLILLLALLILLNLLSISISERRREIGILKALGASKKQIFKLLLLEALLLGLIGSLLG 62
Query: 118 IIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIII 149
+++ ++ ++ + I I+I++ +++I++I ++
Sbjct: 63 LLLGFLLAYLLSSAIASFLGFSLPLSIDPIVILLSLLLILLIALL 107
Score = 44.2 bits (105), Expect = 2e-05
Identities = 11/108 (10%), Positives = 50/108 (46%), Gaps = 35/108 (32%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIII------------------IIIIIIIIIIIIIIIIII 118
+++ ++I+++ ++I++ ++ I I I ++++ +++ +I +
Sbjct: 1 LLLSVLILLLALLILLNLLSISISERRREIGILKALGASKKQIFKLLLLEALLLGLIGSL 60
Query: 119 IIIII-----------------IIIIIIIIIIIIIIIIIIIIIIIIII 149
+ +++ + + I I+I++ +++I++I ++
Sbjct: 61 LGLLLGFLLAYLLSSAIASFLGFSLPLSIDPIVILLSLLLILLIALLA 108
Score = 43.8 bits (104), Expect = 3e-05
Identities = 10/94 (10%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIII-----IIIIIII------IIIIIIIIIIIIIIIIII 126
+++ ++I+++ ++I++ ++ I I I I+ + I ++++ +++ +I +
Sbjct: 1 LLLSVLILLLALLILLNLLSISISERRREIGILKALGASKKQIFKLLLLEALLLGLIGSL 60
Query: 127 IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ +++ ++ ++ I + L + +
Sbjct: 61 LGLLLGFLLAYLLSSAIASFLGFSLPLSIDPIVI 94
Score = 40.7 bits (96), Expect = 3e-04
Identities = 9/94 (9%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIII-----IIIIIII------IIIIIIIIIIIIIIIIII 129
+++ ++I+++ ++I++ ++ I I I I+ + I ++++ +++ +I +
Sbjct: 1 LLLSVLILLLALLILLNLLSISISERRREIGILKALGASKKQIFKLLLLEALLLGLIGSL 60
Query: 130 IIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+ +++ ++ ++ I +
Sbjct: 61 LGLLLGFLLAYLLSSAIASFLGFSLPLSIDPIVI 94
Score = 35.3 bits (82), Expect = 0.026
Identities = 8/52 (15%), Positives = 26/52 (50%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ + I + + + I I+I++ +++I++I ++ ++ I+ I
Sbjct: 70 AYLLSSAIASFLGFSLPLSIDPIVILLSLLLILLIALLASLLPARRILKISP 121
>gnl|CDD|149146 pfam07907, YibE_F, YibE/F-like protein. The sequences featured in
this family are similar to two proteins expressed by
Lactococcus lactis, YibE and YibF. Most of the members
of this family are annotated as being putative membrane
proteins, and in fact the sequences contain a high
proportion of hydrophobic residues.
Length = 244
Score = 55.1 bits (134), Expect = 2e-08
Identities = 15/100 (15%), Positives = 53/100 (53%), Gaps = 23/100 (23%)
Query: 75 KYIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIII-----IIIIIIIIIII 121
++I+ I+ I++++++ ++ +++ +++ +++I II I++ II+ II
Sbjct: 1 NVLVILAILFILLMLLVGGKKGLRSLLSLVLNFVLLFLVLIPIILAGFNPILVTIILAII 60
Query: 122 IIIIIIIII----------IIIIIIIIIIIIIIIIIIIDL 151
I + + ++ + ++ +++ I+ +++I L
Sbjct: 61 ITAVTLFLVNGFNKKTLAAFLGTLLGVLLAGILALLVIKL 100
Score = 47.8 bits (115), Expect = 6e-06
Identities = 12/82 (14%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------- 121
K+ ++ +++ +++ +++I II+ I++ II+ III + + ++
Sbjct: 17 VGGKKGLRSLLSLVLNFVLLFLVLIPIILAGFNPILVTIILAIIITAVTLFLVNGFNKKT 76
Query: 122 IIIIIIIIIIIIIIIIIIIIII 143
+ + ++ +++ I+ +++I
Sbjct: 77 LAAFLGTLLGVLLAGILALLVI 98
Score = 45.9 bits (110), Expect = 2e-05
Identities = 14/72 (19%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 90 IIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+++I+ I+ I++++++ + ++ +++ +++ +++I II+ I++ II+ III
Sbjct: 2 VLVILAILFILLMLLVGGKKGLRSLLSLVLNFVLLFLVLIPIILAGFNPILVTIILAIII 61
Query: 145 IIIIIDLIFDFT 156
+ + L+ F
Sbjct: 62 TAVTLFLVNGFN 73
Score = 36.3 bits (85), Expect = 0.034
Identities = 11/67 (16%), Positives = 41/67 (61%), Gaps = 9/67 (13%)
Query: 103 IIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIDLIF 153
+++I+ I+ I++++++ + ++ +++ +++ +++I II+ I++ II+ +I
Sbjct: 2 VLVILAILFILLMLLVGGKKGLRSLLSLVLNFVLLFLVLIPIILAGFNPILVTIILAIII 61
Query: 154 DFTFMYL 160
++L
Sbjct: 62 TAVTLFL 68
>gnl|CDD|147012 pfam04647, AgrB, Accessory gene regulator B. The arg locus
consists of two transcripts: RNAII and RNAIII. RNAII
encodes four genes (agrA, B, C, and D) whose gene
products assemble a quorum sensing system. AgrB and AgrD
are essential for the production of the autoinducing
peptide which functions as a signal for quorum sensing.
AgrB is a transmembrane protein.
Length = 185
Score = 53.7 bits (130), Expect = 3e-08
Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 21/98 (21%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------------------I 114
+II +I+ ++I ++I +I + I II+ II +III I
Sbjct: 80 FIISLILFVLIPLLIKLISLNNYIAIILFIISLIIIYKYAPADTPKKPITNEELRKKLKI 139
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
II+++I+++I +I+ I+++I++ I++ I L+
Sbjct: 140 KSIIVLLILLVISLILSENYFILLLIVLGILLQSITLL 177
Score = 50.3 bits (121), Expect = 5e-07
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------------- 116
+ II +I+ ++I ++I +I + I II+ II +III
Sbjct: 74 KSSLRCFIISLILFVLIPLLIKLISLNNYIAIILFIISLIIIYKYAPADTPKKPITNEEL 133
Query: 117 -----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I II+++I+++I +I+ I+++I++ I++ I
Sbjct: 134 RKKLKIKSIIVLLILLVISLILSENYFILLLIVLGILLQSI 174
Score = 49.1 bits (118), Expect = 1e-06
Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 24/99 (24%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------------------IIIII 111
+++I ++I +I + I II+ II +III II+++
Sbjct: 87 FVLIPLLIKLISLNNYIAIILFIISLIIIYKYAPADTPKKPITNEELRKKLKIKSIIVLL 146
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
I+++I +I+ I+++I++ I++ I ++ I ++
Sbjct: 147 ILLVISLILSENYFILLLIVLGILLQSITLLPIGYKLLK 185
Score = 48.3 bits (116), Expect = 2e-06
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 15/94 (15%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------------IIIII 119
KY + +I+ + +I+I+II +++ + +II++ ++ II +
Sbjct: 25 KYGLEVILGNLFKLILILIIALLLGVFPETLIILLSFSLLRRFAGGYHAKSSLRCFIISL 84
Query: 120 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I+ ++I ++I +I + I II+ II +II +
Sbjct: 85 ILFVLIPLLIKLISLNNYIAIILFIISLIIIYKY 118
Score = 46.8 bits (112), Expect = 7e-06
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 21/91 (23%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------------------II 122
II +I+ ++I ++I +I + I II+ II +III I
Sbjct: 81 IISLILFVLIPLLIKLISLNNYIAIILFIISLIIIYKYAPADTPKKPITNEELRKKLKIK 140
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
II+++I+++I +I+ I+++I++ ++
Sbjct: 141 SIIVLLILLVISLILSENYFILLLIVLGILL 171
Score = 45.3 bits (108), Expect = 2e-05
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 23/98 (23%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIII--------------- 112
+ I + +I+ + +I+I+II +II++ ++
Sbjct: 20 ELEKIKYGLEVILGNLFKLILILIIALLLGVFPETLIILLSFSLLRRFAGGYHAKSSLRC 79
Query: 113 -IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
II +I+ ++I ++I +I + I II+ II +III
Sbjct: 80 FIISLILFVLIPLLIKLISLNNYIAIILFIISLIIIYK 117
Score = 45.3 bits (108), Expect = 3e-05
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 45/132 (34%)
Query: 74 SKYIIIIII-----IIIIIIIIIIIIIII-------------------IIIIIIIIIIII 109
K I+I+II + +II++ ++ +I+ ++I ++I
Sbjct: 36 FKLILILIIALLLGVFPETLIILLSFSLLRRFAGGYHAKSSLRCFIISLILFVLIPLLIK 95
Query: 110 IIIIIIIIIIIIIIIIIIIIII---------------------IIIIIIIIIIIIIIIII 148
+I + I II+ II +III I II+++I+++I +I+
Sbjct: 96 LISLNNYIAIILFIISLIIIYKYAPADTPKKPITNEELRKKLKIKSIIVLLILLVISLIL 155
Query: 149 IDLIFDFTFMYL 160
+ F + L
Sbjct: 156 SENYFILLLIVL 167
Score = 39.5 bits (93), Expect = 0.002
Identities = 13/51 (25%), Positives = 33/51 (64%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
RK+ K II+++I+++I +I+ I+++I++ I++ I ++ I ++
Sbjct: 134 RKKLKIKSIIVLLILLVISLILSENYFILLLIVLGILLQSITLLPIGYKLL 184
Score = 38.7 bits (91), Expect = 0.004
Identities = 11/52 (21%), Positives = 32/52 (61%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
++ I II+++I+++I +I+ I+++I++ I++ I ++ I ++
Sbjct: 133 LRKKLKIKSIIVLLILLVISLILSENYFILLLIVLGILLQSITLLPIGYKLL 184
Score = 36.4 bits (85), Expect = 0.019
Identities = 11/51 (21%), Positives = 31/51 (60%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
+K II+++I+++I +I+ I+++I++ I++ I ++ I ++
Sbjct: 134 RKKLKIKSIIVLLILLVISLILSENYFILLLIVLGILLQSITLLPIGYKLL 184
Score = 36.0 bits (84), Expect = 0.028
Identities = 13/53 (24%), Positives = 32/53 (60%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
R K I II+++I+++I +I+ I+++I++ I++ I ++ I ++
Sbjct: 132 ELRKKLKIKSIIVLLILLVISLILSENYFILLLIVLGILLQSITLLPIGYKLL 184
Score = 35.2 bits (82), Expect = 0.061
Identities = 12/54 (22%), Positives = 33/54 (61%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+ K + I II+++I+++I +I+ I+++I++ I++ I ++ I ++
Sbjct: 131 EELRKKLKIKSIIVLLILLVISLILSENYFILLLIVLGILLQSITLLPIGYKLL 184
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 55.0 bits (133), Expect = 4e-08
Identities = 15/126 (11%), Positives = 54/126 (42%), Gaps = 22/126 (17%)
Query: 50 EKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIII---------I 100
EK +I + KY++ I+ +++ +I ++II++++ +
Sbjct: 120 EKESRIKERLLVSGV-------SPLKYLLGKILGDLLVGLIQLLIILLLLFGLGIPFGNL 172
Query: 101 IIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
++++++ ++ + I + ++ I++I I+I+++ + + +
Sbjct: 173 LLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQ 232
Query: 155 FTFMYL 160
+ F +
Sbjct: 233 WIFSII 238
Score = 48.9 bits (117), Expect = 4e-06
Identities = 13/110 (11%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIII------------------IIIIIIIIIIII 113
S Y ++ +++ ++I+I +II + I+ + ++ I+ +
Sbjct: 89 PNSGYAYYLLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDL 148
Query: 114 IIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIIIDLIFD 154
++ +I ++II++++ +++++++ ++ + I + ++ +F
Sbjct: 149 LVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFK 198
Score = 47.3 bits (113), Expect = 1e-05
Identities = 13/108 (12%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIII 118
V ++ I +++ + + ++ I+ +++ +I ++II++++ ++++
Sbjct: 116 SIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVGLIQLLIILLLLFGLGIPFGNLLLL 175
Query: 119 IIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIDLIFDFTFMYL 160
+++ ++ + I + ++ I++I I+I+ L F ++
Sbjct: 176 LLLFLLYGLAYIALGALLGSLFKNSEAAILVISILILLLSGFFGGLFP 223
Score = 43.5 bits (103), Expect = 2e-04
Identities = 13/83 (15%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIII--IIIIIIIIIIIIIIIIIIIIIIIIII 126
+ I++I I+I+++ + + + + I II I ++ II +
Sbjct: 196 LFKNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYGDL 255
Query: 127 IIIIIIIIIIIIIIIIIIIIIII 149
I++ +II+++ ++++++ ++
Sbjct: 256 AEILLSLIILLLFGVVLLLLALL 278
Score = 43.5 bits (103), Expect = 2e-04
Identities = 15/85 (17%), Positives = 43/85 (50%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+ + K S+ I++I I+I+++ + + + + I II I ++ I
Sbjct: 191 ALLGSLFKNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRI 250
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIII 149
I + I++ +II+++ ++++++
Sbjct: 251 IYGDLAEILLSLIILLLFGVVLLLL 275
>gnl|CDD|223650 COG0577, SalY, ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms].
Length = 419
Score = 55.5 bits (133), Expect = 4e-08
Identities = 9/77 (11%), Positives = 47/77 (61%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ I++ ++ +I+ +I ++ I++ + + +++ +++I + ++ + I++ ++I++
Sbjct: 328 TRREILLQFLLEALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLILL 387
Query: 133 IIIIIIIIIIIIIIIII 149
+I+ +++ +I ++
Sbjct: 388 ALIVALLVGVIAGLLPA 404
Score = 54.0 bits (129), Expect = 1e-07
Identities = 9/78 (11%), Positives = 46/78 (58%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+R + ++ +I+ +I ++ I++ + + +++ +++I + ++ + I++ ++I++
Sbjct: 328 TRREILLQFLLEALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLILL 387
Query: 131 IIIIIIIIIIIIIIIIII 148
+I+ +++ +I ++
Sbjct: 388 ALIVALLVGVIAGLLPAR 405
Score = 53.6 bits (128), Expect = 2e-07
Identities = 10/83 (12%), Positives = 47/83 (56%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I++ ++ +I+ +I ++ I++ + + +++ +++I + ++ + I++ ++I++ +I+
Sbjct: 332 ILLQFLLEALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLILLALIV 391
Query: 140 IIIIIIIIIIDLIFDFTFMYLKE 162
+++ +I + + E
Sbjct: 392 ALLVGVIAGLLPARKAAKLDPIE 414
Score = 53.6 bits (128), Expect = 2e-07
Identities = 9/81 (11%), Positives = 45/81 (55%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
R+ ++ +I+ +I ++ I++ + + +++ +++I + ++ + I++ ++I+
Sbjct: 327 ATRREILLQFLLEALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLIL 386
Query: 129 IIIIIIIIIIIIIIIIIIIII 149
+ +I+ +++ +I ++
Sbjct: 387 LALIVALLVGVIAGLLPARKA 407
Score = 52.4 bits (125), Expect = 4e-07
Identities = 9/76 (11%), Positives = 45/76 (59%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I+ +I ++ I++ + + +++ +++I + ++ + I++ ++I++ +I+ +++ +I
Sbjct: 341 LILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLILLALIVALLVGVIAG 400
Query: 137 IIIIIIIIIIIIIDLI 152
++ + I+ +
Sbjct: 401 LLPARKAAKLDPIEAL 416
Score = 52.4 bits (125), Expect = 5e-07
Identities = 9/78 (11%), Positives = 44/78 (56%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++ +I+ +I ++ I++ + + +++ +++I + ++ + I++ ++I++ +I+
Sbjct: 333 LLQFLLEALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLILLALIVA 392
Query: 134 IIIIIIIIIIIIIIIIDL 151
+++ +I ++ L
Sbjct: 393 LLVGVIAGLLPARKAAKL 410
Score = 51.3 bits (122), Expect = 1e-06
Identities = 10/79 (12%), Positives = 46/79 (58%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ K I++ ++ +I+ +I ++ I++ + + +++ +++I + ++ + I++
Sbjct: 321 ILKALGATRREILLQFLLEALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILL 380
Query: 130 IIIIIIIIIIIIIIIIIII 148
++I++ +I+ +++ +I
Sbjct: 381 SPLLILLALIVALLVGVIA 399
Score = 50.1 bits (119), Expect = 2e-06
Identities = 9/74 (12%), Positives = 42/74 (56%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I+ +I ++ I++ + + +++ +++I + ++ + I++ ++I++ +I+ +++ +I
Sbjct: 341 LILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLILLALIVALLVGVIAG 400
Query: 136 IIIIIIIIIIIIII 149
++ + I
Sbjct: 401 LLPARKAAKLDPIE 414
Score = 49.3 bits (117), Expect = 4e-06
Identities = 9/75 (12%), Positives = 45/75 (60%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
K + I++ ++ +I+ +I ++ I++ + + +++ +++I + ++ + I++
Sbjct: 323 KALGATRREILLQFLLEALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILLSP 382
Query: 135 IIIIIIIIIIIIIII 149
++I++ +I+ +++ +
Sbjct: 383 LLILLALIVALLVGV 397
Score = 48.2 bits (114), Expect = 1e-05
Identities = 13/104 (12%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------IIIII 119
++ + + I +I +I+ I I I+++ ++ I I+ I++
Sbjct: 277 SILKSIQLLLGVDKAIAVISLIVGAIGIYNILLVSVLERTREIGILKALGATRREILLQF 336
Query: 120 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
++ +I+ +I ++ I++ + + +++ +++ F
Sbjct: 337 LLEALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILL 380
Score = 46.6 bits (110), Expect = 3e-05
Identities = 14/107 (13%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIII-------------------IIIIIIIIIIIIIIII 113
K I +I +I+ I I I+++ + I++ ++ +I+ +I
Sbjct: 288 VDKAIAVISLIVGAIGIYNILLVSVLERTREIGILKALGATRREILLQFLLEALILGLIG 347
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
++ I++ + + +++ +++I + ++ + I++ + ++ L
Sbjct: 348 GLLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLILLALIVALL 394
Score = 46.3 bits (109), Expect = 4e-05
Identities = 20/120 (16%), Positives = 49/120 (40%)
Query: 41 IQSQLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIII 100
+ L L + V E ++ K I +++ + I +I +I+ I I
Sbjct: 246 VAELLAERLSNKKESKDYDVKDIQKVLENLKSILKSIQLLLGVDKAIAVISLIVGAIGIY 305
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I+++ ++ I I+ + I++ ++ +I+ +I ++ I++ L L
Sbjct: 306 NILLVSVLERTREIGILKALGATRREILLQFLLEALILGLIGGLLGILLGLGLSLLLALL 365
Score = 42.0 bits (98), Expect = 8e-04
Identities = 6/65 (9%), Positives = 36/65 (55%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++ + + +++ +++I + ++ + I++ ++I++ +I+ +++ +I ++ +
Sbjct: 352 ILLGLGLSLLLALLLIASLFFLLALPILLSPLLILLALIVALLVGVIAGLLPARKAAKLD 411
Query: 136 IIIII 140
I +
Sbjct: 412 PIEAL 416
Score = 42.0 bits (98), Expect = 8e-04
Identities = 16/97 (16%), Positives = 42/97 (43%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I +++ + I +I +I+ I I I+++ ++ I I+ + I++ ++
Sbjct: 280 KSIQLLLGVDKAIAVISLIVGAIGIYNILLVSVLERTREIGILKALGATRREILLQFLLE 339
Query: 136 IIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFL 172
+I+ +I ++ I+ + + L L L
Sbjct: 340 ALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLAL 376
Score = 37.4 bits (86), Expect = 0.027
Identities = 7/58 (12%), Positives = 31/58 (53%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
S + +++I + ++ + I++ ++I++ +I+ +++ +I ++ + I +
Sbjct: 359 SLLLALLLIASLFFLLALPILLSPLLILLALIVALLVGVIAGLLPARKAAKLDPIEAL 416
Score = 32.4 bits (73), Expect = 0.90
Identities = 10/93 (10%), Positives = 36/93 (38%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K+ + + I I + ++ +I I+ + + + +I+I + +++
Sbjct: 159 KKGPLLDGLGYTISINGLGLLFKVIGILKLFGSSLSASFSKLNNLILIPLSAFRLLLNAR 218
Query: 132 IIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
I+ + + + I + + I + + +
Sbjct: 219 ILFTVSSLSAVTITVAGVASIQEVSKKVAELLA 251
Score = 32.0 bits (72), Expect = 1.0
Identities = 6/53 (11%), Positives = 27/53 (50%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
+ S + ++ + I++ ++I++ +I+ +++ +I ++ + I +
Sbjct: 364 LLLIASLFFLLALPILLSPLLILLALIVALLVGVIAGLLPARKAAKLDPIEAL 416
Score = 30.9 bits (69), Expect = 2.5
Identities = 10/88 (11%), Positives = 34/88 (38%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
E + K ++ + I I + ++ +I I+ + + + +I+I +
Sbjct: 152 ELAEELFKKGPLLDGLGYTISINGLGLLFKVIGILKLFGSSLSASFSKLNNLILIPLSAF 211
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
+++ I+ + + + I + +
Sbjct: 212 RLLLNARILFTVSSLSAVTITVAGVASI 239
Score = 30.5 bits (68), Expect = 3.3
Identities = 9/79 (11%), Positives = 36/79 (45%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++ I+ III + +++ ++ + + + ++ + + I+++ I +
Sbjct: 5 LLTILGIIIGVALVVALLALGLGFRLTVLASLSDLGANTILVLPKKNNAIFTPNPLSTET 64
Query: 144 IIIIIIDLIFDFTFMYLKE 162
++ + D+I F+++
Sbjct: 65 LLGLAEDVIKILAFIFIVY 83
Score = 30.5 bits (68), Expect = 3.4
Identities = 10/87 (11%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--IIIIIIIIIIIIIIIIII 130
+ + ++ I+ III + +++ ++ + + + ++ + + I+++ I +
Sbjct: 1 KLRTLLTILGIIIGVALVVALLALGLGFRLTVLASLSDLGANTILVLPKKNNAIFTPNPL 60
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDFTF 157
++ + +I I+ I +++ +F
Sbjct: 61 STETLLGLAEDVIKILAFIFIVYSVSF 87
Score = 29.3 bits (65), Expect = 7.2
Identities = 13/95 (13%), Positives = 38/95 (40%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ ++ + + I ++ + I+ I +++ + I +I +I+ I I
Sbjct: 245 KVAELLAERLSNKKESKDYDVKDIQKVLENLKSILKSIQLLLGVDKAIAVISLIVGAIGI 304
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
I+++ ++ I I+ + + +L E
Sbjct: 305 YNILLVSVLERTREIGILKALGATRREILLQFLLE 339
Score = 29.3 bits (65), Expect = 8.9
Identities = 7/55 (12%), Positives = 23/55 (41%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 109
+ L A+ + S +I++ +I+ +++ +I ++ + I +
Sbjct: 362 LALLLIASLFFLLALPILLSPLLILLALIVALLVGVIAGLLPARKAAKLDPIEAL 416
>gnl|CDD|219503 pfam07666, MpPF26, M penetrans paralogue family 26. These proteins
include those ascribed to M penetrans paralogue family
26 in.
Length = 133
Score = 52.0 bits (125), Expect = 5e-08
Identities = 19/81 (23%), Positives = 41/81 (50%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
++K S III+ I+ +++ + +II I+I + + ++I +++I+
Sbjct: 7 KIKKISWTIIILYILATLLLFVSLIIYIVISSKSNSTSSDYYLESSPLEANLLIGVLLIL 66
Query: 129 IIIIIIIIIIIIIIIIIIIII 149
+ II+ I I+ II+ I
Sbjct: 67 LDDIIVFFYIANFILEIILTI 87
Score = 49.3 bits (118), Expect = 4e-07
Identities = 19/82 (23%), Positives = 39/82 (47%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K+ K I III+ I+ +++ + +II I+I + + ++I +++I
Sbjct: 6 KKIKKISWTIIILYILATLLLFVSLIIYIVISSKSNSTSSDYYLESSPLEANLLIGVLLI 65
Query: 132 IIIIIIIIIIIIIIIIIIDLIF 153
++ II+ I I+ I L
Sbjct: 66 LLDDIIVFFYIANFILEIILTI 87
Score = 46.6 bits (111), Expect = 3e-06
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
++K K III+ I+ +++ + +II I+I + + ++I +++
Sbjct: 5 IKKIKKISWTIIILYILATLLLFVSLIIYIVISSKSNSTSSDYYLESSPLEANLLIGVLL 64
Query: 130 IIIIIIIIIIIIIIIIIIII 149
I++ II+ I I+ II
Sbjct: 65 ILLDDIIVFFYIANFILEII 84
Score = 44.3 bits (105), Expect = 2e-05
Identities = 19/82 (23%), Positives = 37/82 (45%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K K I I III+ I+ +++ + +II I+I + + ++I +
Sbjct: 3 KLIKKIKKISWTIIILYILATLLLFVSLIIYIVISSKSNSTSSDYYLESSPLEANLLIGV 62
Query: 132 IIIIIIIIIIIIIIIIIIDLIF 153
++I++ II+ I I I
Sbjct: 63 LLILLDDIIVFFYIANFILEII 84
Score = 41.6 bits (98), Expect = 2e-04
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------II 121
S + + ++I +++I++ II+ I I+ II+ I I +
Sbjct: 44 SSDYYLESSPLEANLLIGVLLILLDDIIVFFYIANFILEIILTIKISLLKGKHPEFKKVS 103
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ I++II I I+ I II I++ I
Sbjct: 104 LHKILLIIGIFILPIFSIIDCFILVSKI 131
Score = 41.2 bits (97), Expect = 3e-04
Identities = 15/72 (20%), Positives = 34/72 (47%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I III+ I+ +++ + +II I+I + + ++I +++I++ I
Sbjct: 11 ISWTIIILYILATLLLFVSLIIYIVISSKSNSTSSDYYLESSPLEANLLIGVLLILLDDI 70
Query: 147 IIIDLIFDFTFM 158
I+ I +F
Sbjct: 71 IVFFYIANFILE 82
Score = 41.2 bits (97), Expect = 3e-04
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------IIII 115
++ + S ++I +++I++ II+ I I+ II+ I I + +
Sbjct: 46 DYYLESSPLEANLLIGVLLILLDDIIVFFYIANFILEIILTIKISLLKGKHPEFKKVSLH 105
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIII 141
I++II I I+ I II I++ I
Sbjct: 106 KILLIIGIFILPIFSIIDCFILVSKI 131
Score = 40.8 bits (96), Expect = 4e-04
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------- 122
K + + + ++I +++I++ II+ I I+ II+ I I
Sbjct: 39 KSNSTSSDYYLESSPLEANLLIGVLLILLDDIIVFFYIANFILEIILTIKISLLKGKHPE 98
Query: 123 ---IIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ + I++II I I+ I II I++ I
Sbjct: 99 FKKVSLHKILLIIGIFILPIFSIIDCFILVSKI 131
Score = 38.9 bits (91), Expect = 0.002
Identities = 14/69 (20%), Positives = 32/69 (46%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
I III+ I+ +++ + +II I+I + + ++I +++I++ D+
Sbjct: 11 ISWTIIILYILATLLLFVSLIIYIVISSKSNSTSSDYYLESSPLEANLLIGVLLILLDDI 70
Query: 152 IFDFTFMYL 160
I F
Sbjct: 71 IVFFYIANF 79
Score = 38.5 bits (90), Expect = 0.002
Identities = 14/71 (19%), Positives = 33/71 (46%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
I III+ I+ +++ + +II I+I + + ++I +++I++ I
Sbjct: 11 ISWTIIILYILATLLLFVSLIIYIVISSKSNSTSSDYYLESSPLEANLLIGVLLILLDDI 70
Query: 149 IDLIFDFTFMY 159
I + F+
Sbjct: 71 IVFFYIANFIL 81
>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease
component [Defense mechanisms].
Length = 286
Score = 54.6 bits (131), Expect = 5e-08
Identities = 6/88 (6%), Positives = 47/88 (53%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ + K Y+++ +I +++++I ++ + + +++++++++++++ + + +++
Sbjct: 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLS 190
Query: 126 IIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ + ++I+ + + +F
Sbjct: 191 TFAKSQLQCASAVGNLLILPLGFLSGVF 218
Score = 51.9 bits (124), Expect = 4e-07
Identities = 7/104 (6%), Positives = 50/104 (48%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
+ L + R+R + +++ + + I++ I+ +++ +I +++++I
Sbjct: 97 MSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVI 156
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
++ + + +++++++++++++ + + +++
Sbjct: 157 AFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCA 200
Score = 47.6 bits (113), Expect = 9e-06
Identities = 9/99 (9%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIIIIIIIIII 121
+I+ +I++ ++ I + + + I++ I+ +++ +I
Sbjct: 89 FIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLI 148
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+++++I ++ + + +++++++++ L+ + L
Sbjct: 149 AGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGL 187
Score = 43.8 bits (103), Expect = 2e-04
Identities = 10/111 (9%), Positives = 39/111 (35%), Gaps = 18/111 (16%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------- 113
S + + + I+ +I++ ++ I +
Sbjct: 67 GLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVS 126
Query: 114 ----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ I++ I+ +++ +I +++++I ++ + + L+ + L
Sbjct: 127 PVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLL 177
Score = 38.8 bits (90), Expect = 0.008
Identities = 10/87 (11%), Positives = 35/87 (40%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S+++ ++ +++ +II I+ +II ++ + + + + + I+
Sbjct: 33 SRFLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVP 92
Query: 134 IIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+I++ ++ I +F
Sbjct: 93 GVILMSVLFSGIFSFSSALFREREFGT 119
Score = 38.0 bits (88), Expect = 0.012
Identities = 9/96 (9%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ S + + I+ +I++ ++ I + + +++ + + I
Sbjct: 74 GRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFI 133
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
++ I+ +++ +I +++++ + F +L
Sbjct: 134 LLGKIVPYLVVASLIAGLVLLV-IAFLLGVPFLGSL 168
Score = 36.1 bits (83), Expect = 0.048
Identities = 11/100 (11%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIII 120
++++ I+ + ++ +++ +II I+ +II ++
Sbjct: 24 FLFLLLRILSRFLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPS 83
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ + I+ +I++ ++ I + T L
Sbjct: 84 LDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERL 123
Score = 35.3 bits (81), Expect = 0.093
Identities = 4/84 (4%), Positives = 40/84 (47%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+++ + + +++++++++++++ + + +++ + + ++I+ + +
Sbjct: 157 AFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSG 216
Query: 135 IIIIIIIIIIIIIIIDLIFDFTFM 158
+ + ++ + I I T+
Sbjct: 217 VFFPLELLPAWLQGISYINPLTYA 240
Score = 32.2 bits (73), Expect = 0.85
Identities = 11/88 (12%), Positives = 35/88 (39%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I+ + ++ +++ +II I+ +II ++ + + + + + I
Sbjct: 31 ILSRFLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFI 90
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
+ +I++ ++ F +EF
Sbjct: 91 VPGVILMSVLFSGIFSFSSALFREREFG 118
>gnl|CDD|181988 PRK09609, PRK09609, hypothetical protein; Provisional.
Length = 312
Score = 54.7 bits (132), Expect = 6e-08
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 53 DKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 112
KI+ L+ K + K ++ I +II++III+ I ++ + I
Sbjct: 145 QKIILLEKKKKKLEK---TNEEKSLLNFSWIAALIILVIIILFIYFVVGFLDPDFFIQSF 201
Query: 113 IIIIIIIIIIIIIII--IIIIIIIII----------IIIIIIIIIIIIIDLI 152
I ++I+II I++II +I + I I+I +++ I
Sbjct: 202 SFIKNKRSLMILIISGFILMIIFVIWARFFIKPKRFLTIAPIVIFSALLEPI 253
Score = 48.1 bits (115), Expect = 7e-06
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Query: 53 DKILYLQTATKCMVC----EFVRKRSKYIII----IIIIIIIIIIIIIIIIIIIIIIIII 104
+KI + + E ++K + II+ + ++ I +II+
Sbjct: 119 NKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKKLEKTNEEKSLLNFSWIAALIIL 178
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+III+ I ++ + I I ++I+II I++II +I+ F+ K F
Sbjct: 179 VIIILFIYFVVGFLDPDFFIQSFSFIKNKRSLMILIISGFILMIIFVIWARFFIKPKRF 237
Score = 43.1 bits (102), Expect = 3e-04
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----III 131
II+ I ++ + I I ++I+II I++II +I I + I
Sbjct: 181 IILFIYFVVGFLDPDFFIQSFSFIKNKRSLMILIISGFILMIIFVIWARFFIKPKRFLTI 240
Query: 132 IIIIIIIIIIIIIIIIIIDLI 152
I+I ++ I +I++
Sbjct: 241 APIVIFSALLEPINVILLSSA 261
Score = 38.1 bits (89), Expect = 0.014
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----- 123
F++ + +I+II I++II +I I + I I+I ++ I +I+
Sbjct: 203 FIKNKRSLMILIISGFILMIIFVIWARFFIKPKRFLTIAPIVIFSALLEPINVILLSSAD 262
Query: 124 ------------IIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I II I I + II II L+
Sbjct: 263 AQSLGLDFDTWLFIHIITSPIKIWFNLSIIYFTYKIIAPLV 303
Score = 37.3 bits (87), Expect = 0.019
Identities = 16/79 (20%), Positives = 32/79 (40%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+ F K +++ I I+I ++ I +I++ + + + I II I
Sbjct: 225 VIWARFFIKPKRFLTIAPIVIFSALLEPINVILLSSADAQSLGLDFDTWLFIHIITSPIK 284
Query: 124 IIIIIIIIIIIIIIIIIII 142
I + II II ++
Sbjct: 285 IWFNLSIIYFTYKIIAPLV 303
Score = 29.6 bits (67), Expect = 5.1
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
++ I +II++III+ I + F +++ F
Sbjct: 166 LLNFSWIAALIILVIIILFIYFVVGFLDPDFFIQSFSF 203
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen
and teichoic acid [General function prediction only].
Length = 480
Score = 54.8 bits (132), Expect = 9e-08
Identities = 9/105 (8%), Positives = 57/105 (54%), Gaps = 15/105 (14%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-- 128
R++ +Y+++I++ +++++++ +I+++++++I ++ I ++ +++ I+ + ++++ +
Sbjct: 75 REKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALLLRILSLALLLLPLSS 134
Query: 129 -------------IIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ + I+ I ++ + ++ + + +
Sbjct: 135 VLRGLFQGFGRFGPLALSIVSSIFLLAAVFALLFAALGLAVWALV 179
Score = 53.6 bits (129), Expect = 2e-07
Identities = 12/99 (12%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
R K +++I++ +++++++ +I+++++++I ++ I ++ +++ I+ + ++++ +
Sbjct: 73 EYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALLLRILSLALLLLPL 132
Query: 131 IIII---------IIIIIIIIIIIIIIIDLIFDFTFMYL 160
++ + + I+ I ++ +F F L
Sbjct: 133 SSVLRGLFQGFGRFGPLALSIVSSIFLLAAVFALLFAAL 171
Score = 51.3 bits (123), Expect = 1e-06
Identities = 13/100 (13%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIII 120
F K + I+ ++ + + + ++ + + ++++I +I ++ +I+ +++I
Sbjct: 323 FGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLI 382
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+I I +I + +++ I+ + + F++ L
Sbjct: 383 PRFGLIGAAIATASVIALALLLFYILRLRLVRTKFSYFLL 422
Score = 46.7 bits (111), Expect = 3e-05
Identities = 12/105 (11%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIIIIIIIII 120
Y + + II + I+ + I +I++ +++++++ +I++++++
Sbjct: 44 LYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLL 103
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
+I ++ I ++ +++ I+ + ++++ + + F F
Sbjct: 104 LIAYLLAPIDPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGP 148
Score = 44.4 bits (105), Expect = 2e-04
Identities = 9/102 (8%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIII 115
+ + + + ++ + ++++I I ++ ++++ II ++ I+
Sbjct: 276 ALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPILQ 335
Query: 116 IIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIDLIF 153
++ + + + ++ + ++ + ++++I +I +++LI
Sbjct: 336 LLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLIL 377
Score = 39.4 bits (92), Expect = 0.006
Identities = 14/123 (11%), Positives = 51/123 (41%), Gaps = 33/123 (26%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIII--- 117
+ K I + +++ +I ++ +I I ++ + + + II + I+
Sbjct: 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFG 62
Query: 118 --------------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+I++ +++++++ +I+++++++I ++ I L
Sbjct: 63 LPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALLLRI 122
Query: 158 MYL 160
+ L
Sbjct: 123 LSL 125
>gnl|CDD|218916 pfam06157, DUF973, Protein of unknown function (DUF973). This
family consists of several hypothetical archaeal
proteins of unknown function.
Length = 283
Score = 53.9 bits (130), Expect = 9e-08
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 21/112 (18%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-- 127
+R S Y+II I+ I III+I + I +I+ +I+ I ++II ++++II I +
Sbjct: 9 LRNGSLYLIIAEILGFIGIIIVISVSSSIASVILNGLIVSIFLLIIGLVLLIIGFIRLRS 68
Query: 128 -------------------IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I+II+ +IIII ++ I+ ++ L+ +++
Sbjct: 69 GFNILSSTGRDVGIGITGIILIIVGYVIIIIGALLTIVGLLSLVGGVIILFI 120
Score = 45.5 bits (108), Expect = 4e-05
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
R I I II+II+ +IIII ++ I+ ++ ++ +II+ I I+ +I I+I + I
Sbjct: 77 GRDVGIGITGIILIIVGYVIIIIGALLTIVGLLSLVGGVIILFIGGILGLIGYILIGLGI 136
Query: 132 ----------------IIIIIIIIIIIIIIIIIIDL 151
I+III II I I+ + L
Sbjct: 137 YRIGEIYNENLVKIGGILIIIPIISFIGFILTYVGL 172
Score = 42.8 bits (101), Expect = 4e-04
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 42/118 (35%)
Query: 77 IIIIIIIIIIIIIIII----------------------IIIIIIIIIIIIIIIIIIIIII 114
I ++II ++++II I II+II+ +IIII ++ I+ +
Sbjct: 49 IFLLIIGLVLLIIGFIRLRSGFNILSSTGRDVGIGITGIILIIVGYVIIIIGALLTIVGL 108
Query: 115 IIIIIIIIIIIIIIIIIIIIIIII--------------------IIIIIIIIIIIDLI 152
+ ++ +II+ I I+ +I I+I I+III II I I
Sbjct: 109 LSLVGGVIILFIGGILGLIGYILIGLGIYRIGEIYNENLVKIGGILIIIPIISFIGFI 166
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 20/95 (21%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII- 132
S + I I II+II+ +IIII ++ I+ ++ ++ +II+ I I+ +I I+I
Sbjct: 74 SSTGRDVGIGITGIILIIVGYVIIIIGALLTIVGLLSLVGGVIILFIGGILGLIGYILIG 133
Query: 133 -------------------IIIIIIIIIIIIIIII 148
I+III II I I+
Sbjct: 134 LGIYRIGEIYNENLVKIGGILIIIPIISFIGFILT 168
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 54.6 bits (131), Expect = 9e-08
Identities = 13/98 (13%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
R S Y I+++ +++ +++ ++ ++ II +++I++ ++ +++ +I+ ++I+
Sbjct: 297 LFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLLANVILAAFLLIL 356
Query: 129 IIIIIIIIII---IIIIIIIIIIIDLIFDFTFMYLKEF 163
+I ++ + + + ++ + LI L
Sbjct: 357 LIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVIL 394
Score = 53.4 bits (128), Expect = 2e-07
Identities = 10/95 (10%), Positives = 50/95 (52%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
R +++ +++ ++ ++ II +++I++ ++ +++ +I+ ++I++I ++ +
Sbjct: 305 RFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLLANVILAAFLLILLIPPLLAL 364
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
++ + + ++ + +I + + + L F
Sbjct: 365 FALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLP 399
Score = 48.4 bits (115), Expect = 8e-06
Identities = 9/93 (9%), Positives = 48/93 (51%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+ + + + I+++ +++ +++ ++ ++ II +++I++ ++ +++
Sbjct: 285 LQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLL 344
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+I+ ++I++I ++ + ++ +F T
Sbjct: 345 ANVILAAFLLILLIPPLLALFALLQLGVFLVTT 377
Score = 47.2 bits (112), Expect = 2e-05
Identities = 9/95 (9%), Positives = 49/95 (51%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ I+++ +++ +++ ++ ++ II +++I++ ++ +++ +I+ +
Sbjct: 294 LPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLLANVILAAFL 353
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
+I++I ++ + ++ + + L+ + + V
Sbjct: 354 LILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVV 388
Score = 46.1 bits (109), Expect = 4e-05
Identities = 10/79 (12%), Positives = 44/79 (55%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I+++ +++ +++ ++ ++ II +++I++ ++ +++ +I+ ++I++I ++ +
Sbjct: 305 RFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLLANVILAAFLLILLIPPLLAL 364
Query: 148 IIDLIFDFTFMYLKEFRVE 166
L + K R+
Sbjct: 365 FALLQLGVFLVTTKGLRLI 383
Score = 46.1 bits (109), Expect = 5e-05
Identities = 15/81 (18%), Positives = 46/81 (56%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
I+++ +++ +++ ++ ++ II +++I++ ++ +++ +I+ ++I++I L+
Sbjct: 305 RFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLLANVILAAFLLILLIPPLLAL 364
Query: 155 FTFMYLKEFRVEQCPLFLQHK 175
F + L F V L L K
Sbjct: 365 FALLQLGVFLVTTKGLRLIAK 385
>gnl|CDD|219521 pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling.
This entry represents the transmembrane region of the
7TM-DISM (7TM Receptors with Diverse Intracellular
Signalling Modules).
Length = 207
Score = 52.6 bits (127), Expect = 9e-08
Identities = 13/120 (10%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 55 ILYLQTATKCMVCEFVR---------KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIII 105
L+L F R R +++ + +++++++++ + + + +
Sbjct: 70 YLFLALLVIFFALLFARSFLELKKYLPRLDRLLLGLALLLLLLLLLAPLFPYTLSLRLAQ 129
Query: 106 IIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
++ ++ I+ ++++ II ++ +I++I +I I+ ++ ++ F ++
Sbjct: 130 LLALLFILFLLVLGIIAWRKGYKPARYFLLAWLILLIGALIDILSLLGLLPSNFFTLYLL 189
>gnl|CDD|149215 pfam08006, DUF1700, Protein of unknown function (DUF1700). This
family contains many hypothetical bacterial proteins and
two putative membrane proteins.
Length = 181
Score = 52.2 bits (126), Expect = 1e-07
Identities = 19/81 (23%), Positives = 46/81 (56%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
III+I II+I++++ + II +++++ +I+++ I II + I + + ++
Sbjct: 93 FIIILIPFIILILLVLSLWIIGLVLLLSPLILLVKGIFGGFFFIIFNVFFSIGLFGLGLL 152
Query: 141 IIIIIIIIIDLIFDFTFMYLK 161
+ I++ + L++ YLK
Sbjct: 153 LAIVMYYLTKLLYRLLVKYLK 173
Score = 47.2 bits (113), Expect = 5e-06
Identities = 16/76 (21%), Positives = 44/76 (57%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
III+I II+I++++ + II +++++ +I+++ I II + I + + ++
Sbjct: 93 FIIILIPFIILILLVLSLWIIGLVLLLSPLILLVKGIFGGFFFIIFNVFFSIGLFGLGLL 152
Query: 137 IIIIIIIIIIIIIDLI 152
+ I++ + ++ L+
Sbjct: 153 LAIVMYYLTKLLYRLL 168
Score = 41.8 bits (99), Expect = 3e-04
Identities = 15/61 (24%), Positives = 36/61 (59%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
I I+ ++ + + III+I II+I++++ + II +++++ +I+++ I F
Sbjct: 78 IFRAILAVLGLGLFNFIIILIPFIILILLVLSLWIIGLVLLLSPLILLVKGIFGGFFFII 137
Query: 157 F 157
F
Sbjct: 138 F 138
Score = 41.8 bits (99), Expect = 4e-04
Identities = 15/70 (21%), Positives = 37/70 (52%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
I I+ ++ + + III+I II+I++++ + II +++++ +I+++ I I
Sbjct: 78 IFRAILAVLGLGLFNFIIILIPFIILILLVLSLWIIGLVLLLSPLILLVKGIFGGFFFII 137
Query: 151 LIFDFTFMYL 160
F+
Sbjct: 138 FNVFFSIGLF 147
Score = 41.4 bits (98), Expect = 4e-04
Identities = 16/69 (23%), Positives = 39/69 (56%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
I I+ ++ + + III+I II+I++++ + II +++++ +I+++ I II
Sbjct: 78 IFRAILAVLGLGLFNFIIILIPFIILILLVLSLWIIGLVLLLSPLILLVKGIFGGFFFII 137
Query: 149 IDLIFDFTF 157
++ F
Sbjct: 138 FNVFFSIGL 146
Score = 39.1 bits (92), Expect = 0.002
Identities = 12/73 (16%), Positives = 42/73 (57%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I II+I++++ + II +++++ +I+++ I II + I + + +++ I+
Sbjct: 97 LIPFIILILLVLSLWIIGLVLLLSPLILLVKGIFGGFFFIIFNVFFSIGLFGLGLLLAIV 156
Query: 137 IIIIIIIIIIIII 149
+ + ++ +++
Sbjct: 157 MYYLTKLLYRLLV 169
Score = 35.7 bits (83), Expect = 0.040
Identities = 11/70 (15%), Positives = 41/70 (58%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+II+I++++ + II +++++ +I+++ I II + I + + +++ I++
Sbjct: 100 FIILILLVLSLWIIGLVLLLSPLILLVKGIFGGFFFIIFNVFFSIGLFGLGLLLAIVMYY 159
Query: 136 IIIIIIIIII 145
+ ++ +++
Sbjct: 160 LTKLLYRLLV 169
Score = 31.0 bits (71), Expect = 1.2
Identities = 10/76 (13%), Positives = 41/76 (53%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I++++ + II +++++ +I+++ I II + I + + +++ I++ + +
Sbjct: 104 ILLVLSLWIIGLVLLLSPLILLVKGIFGGFFFIIFNVFFSIGLFGLGLLLAIVMYYLTKL 163
Query: 137 IIIIIIIIIIIIIDLI 152
+ +++ + I ++
Sbjct: 164 LYRLLVKYLKWNIKIV 179
>gnl|CDD|223692 COG0619, CbiQ, ABC-type cobalt transport system, permease component
CbiQ and related transporters [Inorganic ion transport
and metabolism].
Length = 252
Score = 52.8 bits (127), Expect = 1e-07
Identities = 10/85 (11%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
R+K +++ ++II++ ++ +++++II+++ ++++++ I + +++++ +++ +++I
Sbjct: 19 RTKLLLLFLLIILVFLLNDLVLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAF 78
Query: 133 III----IIIIIIIIIIIIIIDLIF 153
+ + + + I L+
Sbjct: 79 TNGFSLGPAVGLFGLGPVTIGSLVL 103
Score = 50.1 bits (120), Expect = 1e-06
Identities = 8/77 (10%), Positives = 45/77 (58%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++++ ++II++ ++ +++++II+++ ++++++ I + +++++ +++ +++I
Sbjct: 22 LLLLFLLIILVFLLNDLVLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAFTNG 81
Query: 149 IDLIFDFTFMYLKEFRV 165
L L +
Sbjct: 82 FSLGPAVGLFGLGPVTI 98
Score = 50.1 bits (120), Expect = 1e-06
Identities = 7/72 (9%), Positives = 45/72 (62%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++++ ++II++ ++ +++++II+++ ++++++ I + +++++ +++ +++I
Sbjct: 22 LLLLFLLIILVFLLNDLVLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAFTNG 81
Query: 144 IIIIIIDLIFDF 155
+ +F
Sbjct: 82 FSLGPAVGLFGL 93
Score = 49.3 bits (118), Expect = 2e-06
Identities = 6/77 (7%), Positives = 47/77 (61%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
++++ ++II++ ++ +++++II+++ ++++++ I + +++++ +++ +++I
Sbjct: 22 LLLLFLLIILVFLLNDLVLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAFTNG 81
Query: 138 IIIIIIIIIIIIDLIFD 154
+ + + + +
Sbjct: 82 FSLGPAVGLFGLGPVTI 98
Score = 48.9 bits (117), Expect = 3e-06
Identities = 7/83 (8%), Positives = 46/83 (55%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+++++II+++ ++++++ I + +++++ +++ +++I + + + + +
Sbjct: 38 LVLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAFTNGFSLGPAVGLFGLGPVT 97
Query: 138 IIIIIIIIIIIIDLIFDFTFMYL 160
I +++ ++I + ++ L
Sbjct: 98 IGSLVLGLLIALRVLLILLAALL 120
Score = 47.7 bits (114), Expect = 7e-06
Identities = 7/72 (9%), Positives = 45/72 (62%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++++ ++II++ ++ +++++II+++ ++++++ I + +++++ +++ +++I
Sbjct: 22 LLLLFLLIILVFLLNDLVLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAFTNG 81
Query: 146 IIIIDLIFDFTF 157
+ + F
Sbjct: 82 FSLGPAVGLFGL 93
Score = 47.4 bits (113), Expect = 1e-05
Identities = 8/90 (8%), Positives = 49/90 (54%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
++ F+ ++II+++ ++++++ I + +++++ +++ +++I +
Sbjct: 28 LIILVFLLNDLVLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAFTNGFSLGPA 87
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ + + + I +++ ++I + +++ L+
Sbjct: 88 VGLFGLGPVTIGSLVLGLLIALRVLLILLA 117
Score = 46.2 bits (110), Expect = 2e-05
Identities = 7/85 (8%), Positives = 47/85 (55%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+++II+++ ++++++ I + +++++ +++ +++I + + + + + I
Sbjct: 39 VLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAFTNGFSLGPAVGLFGLGPVTI 98
Query: 136 IIIIIIIIIIIIIIDLIFDFTFMYL 160
+++ ++I + ++ ++ + L
Sbjct: 99 GSLVLGLLIALRVLLILLAALLLTL 123
Score = 45.8 bits (109), Expect = 3e-05
Identities = 7/76 (9%), Positives = 45/76 (59%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
++++ ++II++ ++ +++++II+++ ++++++ I + +++++ +++ +++I +
Sbjct: 22 LLLLFLLIILVFLLNDLVLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAFTNG 81
Query: 152 IFDFTFMYLKEFRVEQ 167
+ L
Sbjct: 82 FSLGPAVGLFGLGPVT 97
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins. Escherichia
coli Wzx and related proteins from other gram-negative
bacteria are thought to act as flippases, assisting in
the membrane translocation of lipopolysaccharides
including those containing O-antigens. Proteins from the
MATE family are involved in exporting metabolites across
the cell membrane and are often responsible for
multidrug resistance (MDR).
Length = 402
Score = 53.7 bits (130), Expect = 2e-07
Identities = 12/104 (11%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ +++ + II +++ +I+ I+ ++++ + +I +++++ I+ + + +
Sbjct: 66 RYRKEKIREIISTSLVLKLILGILALLLLFLFAFLIAFYDPELVLLLYILALSLPFSALN 125
Query: 128 IIII-----------IIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ I+I II ++ +I+ +I ++ +
Sbjct: 126 SLFRGIFQGFEKMKYIVIARIIESVLSLILALILVLLGGGLIGF 169
Score = 51.0 bits (123), Expect = 1e-06
Identities = 16/104 (15%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIII 125
K + I +++ +I+ I+ ++++ + +I +++++ I+ + + + +
Sbjct: 71 KIREIISTSLVLKLILGILALLLLFLFAFLIAFYDPELVLLLYILALSLPFSALNSLFRG 130
Query: 126 I---------IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I I+I II ++ +I+ +I++++ + F YL
Sbjct: 131 IFQGFEKMKYIVIARIIESVLSLILALILVLLGGGLIGFALAYL 174
Score = 48.7 bits (117), Expect = 7e-06
Identities = 15/96 (15%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIII----III 121
++ I+ + + + + I I+I II ++ +I+ +I+++ +I
Sbjct: 109 VLLLYILALSLPFSALNSLFRGIFQGFEKMKYIVIARIIESVLSLILALILVLLGGGLIG 168
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+ +I ++ I+++ I I++ FD
Sbjct: 169 FALAYLIASVLSAILLLYIYRKKILLPKFFSFDLKL 204
Score = 45.2 bits (108), Expect = 7e-05
Identities = 18/96 (18%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ KYI+I II ++ +I+ +I+++ +I + +I ++ I+++ I I++
Sbjct: 137 KMKYIVIARIIESVLSLILALILVLLGGGLIGFALAYLIASVLSAILLLYIYRKKILLPK 196
Query: 129 IIII-------III----IIIIIIIIIIIIIIDLIF 153
++ + + I +I ID I
Sbjct: 197 FFSFDLKLAKELLRFSIPLALSGIFSLIYTRIDTIM 232
Score = 43.3 bits (103), Expect = 4e-04
Identities = 14/100 (14%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIII---IIIIII--------IIIIIIIIIII 117
+ + + ++ + +I + I I + + II ++ +++ I+
Sbjct: 274 YKNDKDELKKLLKKSFKYLFLISLPIAIGLFLFAEPIITLLFGEEYLPAALVLQILAWGF 333
Query: 118 IIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIDLIF 153
+ I + I I+ I + + I++I ++ +I++L+
Sbjct: 334 LFIFLNGIFGSILQAIGKQKLTLKILLIGALLNVILNLLL 373
Score = 39.4 bits (93), Expect = 0.005
Identities = 13/104 (12%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIII---IIIIII--------IIIIIII 117
+ ++ + +I + I I + + II ++ +++ I+
Sbjct: 270 ISELYKNDKDELKKLLKKSFKYLFLISLPIAIGLFLFAEPIITLLFGEEYLPAALVLQIL 329
Query: 118 IIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIDLIFDFTF 157
+ I + I I+ I + + I++I ++++I +
Sbjct: 330 AWGFLFIFLNGIFGSILQAIGKQKLTLKILLIGALLNVILNLLL 373
Score = 30.6 bits (70), Expect = 2.7
Identities = 10/68 (14%), Positives = 29/68 (42%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I + +I ++ I+++ I I++ + + ++ I + + I +I
Sbjct: 166 LIGFALAYLIASVLSAILLLYIYRKKILLPKFFSFDLKLAKELLRFSIPLALSGIFSLIY 225
Query: 137 IIIIIIII 144
I I++
Sbjct: 226 TRIDTIML 233
Score = 30.6 bits (70), Expect = 2.7
Identities = 10/68 (14%), Positives = 29/68 (42%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+I + +I ++ I+++ I I++ + + ++ I + + I +I
Sbjct: 166 LIGFALAYLIASVLSAILLLYIYRKKILLPKFFSFDLKLAKELLRFSIPLALSGIFSLIY 225
Query: 138 IIIIIIII 145
I I++
Sbjct: 226 TRIDTIML 233
Score = 30.6 bits (70), Expect = 2.7
Identities = 10/68 (14%), Positives = 29/68 (42%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+I + +I ++ I+++ I I++ + + ++ I + + I +I
Sbjct: 166 LIGFALAYLIASVLSAILLLYIYRKKILLPKFFSFDLKLAKELLRFSIPLALSGIFSLIY 225
Query: 139 IIIIIIII 146
I I++
Sbjct: 226 TRIDTIML 233
Score = 30.6 bits (70), Expect = 2.7
Identities = 10/68 (14%), Positives = 29/68 (42%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+I + +I ++ I+++ I I++ + + ++ I + + I +I
Sbjct: 166 LIGFALAYLIASVLSAILLLYIYRKKILLPKFFSFDLKLAKELLRFSIPLALSGIFSLIY 225
Query: 140 IIIIIIII 147
I I++
Sbjct: 226 TRIDTIML 233
>gnl|CDD|223701 COG0628, yhhT, Predicted permease, member of the PurR regulon
[General function prediction only].
Length = 355
Score = 53.0 bits (128), Expect = 2e-07
Identities = 9/96 (9%), Positives = 60/96 (62%), Gaps = 9/96 (9%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------- 122
+R + +++ + I+++++++++++ I+ I++ +++ +++ ++ ++
Sbjct: 3 MRWLPRTLLLGLRILLLLLLLLLLLAILYFFQPILLPLLLALVLAYLLNPLVRRLEKRGI 62
Query: 123 --IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
++ +++++++I+++I+++ +++I +I+ I +
Sbjct: 63 PRLLAVLLVLLLILLLIVLLGLLVIPSLIEQIQNLI 98
Score = 44.2 bits (105), Expect = 2e-04
Identities = 16/85 (18%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
S Y+ +++ +I+ I+ I ++I +++ ++ ++ +I I +I +I +II +
Sbjct: 206 SGYLRGQVLVALIVGILTGIGLLILGVPYALLLGLLAGLLSLIPYIGPVIGLIPAVIIAL 265
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLI 152
+ ++++I+ ++I I I
Sbjct: 266 LQGGPWGALLVLIVFLVIQQIEGNI 290
Score = 42.2 bits (100), Expect = 6e-04
Identities = 6/77 (7%), Positives = 43/77 (55%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
++ ++ +++++++I+++I+++ +++I +I I +I + + ++ + ++
Sbjct: 57 LEKRGIPRLLAVLLVLLLILLLIVLLGLLVIPSLIEQIQNLIKNLPGLDLLQARLAKLLE 116
Query: 129 IIIIIIIIIIIIIIIII 145
+ ++ + + + ++
Sbjct: 117 SLPLLGERLPVSVDALL 133
Score = 41.9 bits (99), Expect = 8e-04
Identities = 10/87 (11%), Positives = 47/87 (54%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
VR+ K I ++ +++++++I+++I+++ +++I +I I +I + + ++ +
Sbjct: 53 LVRRLEKRGIPRLLAVLLVLLLILLLIVLLGLLVIPSLIEQIQNLIKNLPGLDLLQARLA 112
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDF 155
++ + ++ + + + ++ +
Sbjct: 113 KLLESLPLLGERLPVSVDALLSALLSI 139
Score = 41.1 bits (97), Expect = 0.001
Identities = 8/79 (10%), Positives = 43/79 (54%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
++ +++++++I+++I+++ +++I +I I +I + + ++ + ++ + ++
Sbjct: 65 LLAVLLVLLLILLLIVLLGLLVIPSLIEQIQNLIKNLPGLDLLQARLAKLLESLPLLGER 124
Query: 145 IIIIIDLIFDFTFMYLKEF 163
+ + +D + L+
Sbjct: 125 LPVSVDALLSALLSILQSI 143
Score = 39.2 bits (92), Expect = 0.006
Identities = 9/90 (10%), Positives = 46/90 (51%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ R +++++++I+++I+++ +++I +I I +I + + ++ + ++ +
Sbjct: 59 KRGIPRLLAVLLVLLLILLLIVLLGLLVIPSLIEQIQNLIKNLPGLDLLQARLAKLLESL 118
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
++ + + + ++ ++ I+ I
Sbjct: 119 PLLGERLPVSVDALLSALLSILQSILGSLL 148
Score = 38.8 bits (91), Expect = 0.008
Identities = 17/106 (16%), Positives = 54/106 (50%), Gaps = 14/106 (13%)
Query: 65 MVCEFVRKRSKYII-----IIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIII 114
++ +RKR++ I+ + + +++ +I+ I+ I ++I+ +++ ++ +
Sbjct: 185 LLPRKLRKRARRILSEVNATLSGYLRGQVLVALIVGILTGIGLLILGVPYALLLGLLAGL 244
Query: 115 IIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIDLIFDFT 156
+ +I I +I +I +II ++ ++++I+ ++I I
Sbjct: 245 LSLIPYIGPVIGLIPAVIIALLQGGPWGALLVLIVFLVIQQIEGNI 290
Score = 34.1 bits (79), Expect = 0.24
Identities = 10/103 (9%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+++I+++I+++ +++I +I I +I + + ++ + ++ + ++ + + +
Sbjct: 72 LLLILLLIVLLGLLVIPSLIEQIQNLIKNLPGLDLLQARLAKLLESLPLLGERLPVSVDA 131
Query: 137 II-----------------IIIIIIIIIIIDLIFDFTFMYLKE 162
++ + ++ +I+ + L+ F L +
Sbjct: 132 LLSALLSILQSILGSLLSLLSSLLSLIVSLLLVLVLLFFLLLD 174
Score = 33.0 bits (76), Expect = 0.48
Identities = 4/57 (7%), Positives = 34/57 (59%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
+ +++ + I+++++++++++ I+ I++ +++ +++ + + L++ +
Sbjct: 6 LPRTLLLGLRILLLLLLLLLLLAILYFFQPILLPLLLALVLAYLLNPLVRRLEKRGI 62
>gnl|CDD|222381 pfam13789, DUF4181, Domain of unknown function (DUF4181).
Length = 109
Score = 48.8 bits (117), Expect = 3e-07
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------- 121
V K K II++II +II+II I I I + + +I + +I++ +
Sbjct: 26 VNKLHKKGEIILLIIFLIILIIFIYIFITEYLYMYYLIFLFLILLFAFRAFMEWKYDRES 85
Query: 122 ---IIIIIIIIIIIIIIIIIIII 141
I+ + + I ++I I+I
Sbjct: 86 KEYILSLAGLAIFLLITGIMIYF 108
Score = 45.0 bits (107), Expect = 8e-06
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------III 135
II++II +II+II I I I + + +I + +I++ + I+
Sbjct: 32 KGEIILLIIFLIILIIFIYIFITEYLYMYYLIFLFLILLFAFRAFMEWKYDRESKEYILS 91
Query: 136 IIIIIIIIIIIIIIDLIF 153
+ + I ++I I+ F
Sbjct: 92 LAGLAIFLLITGIMIYFF 109
Score = 42.3 bits (100), Expect = 8e-05
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------III 137
II++II +II+II I I I + + +I + +I++ + I+
Sbjct: 32 KGEIILLIIFLIILIIFIYIFITEYLYMYYLIFLFLILLFAFRAFMEWKYDRESKEYILS 91
Query: 138 IIIIIIIIIIIIDLIFDF 155
+ + I ++I +I+ F
Sbjct: 92 LAGLAIFLLITGIMIYFF 109
Score = 31.5 bits (72), Expect = 0.46
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 122 IIIIIIIIIIIIIIIIIIIII--------IIIIIIIDLIFDF-TFM---YLKE 162
II++II +II+II I I +I + + L+F F FM Y +E
Sbjct: 32 KGEIILLIIFLIILIIFIYIFITEYLYMYYLIFLFLILLFAFRAFMEWKYDRE 84
Score = 29.2 bits (66), Expect = 2.7
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIII 96
+ R+ +YI+ + + I ++I I+I
Sbjct: 81 YDRESKEYILSLAGLAIFLLITGIMIYF 108
>gnl|CDD|214445 MTH00166, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 160
Score = 50.2 bits (121), Expect = 3e-07
Identities = 8/73 (10%), Positives = 33/73 (45%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
++I+ ++++++++ I + + + ++I + +II +
Sbjct: 79 SLKLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYL 138
Query: 135 IIIIIIIIIIIII 147
++ +I+++ I I
Sbjct: 139 LLTLIVVVKITNI 151
Score = 50.2 bits (121), Expect = 4e-07
Identities = 9/73 (12%), Positives = 34/73 (46%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S ++I+ ++++++++ I + + + ++I + +II +
Sbjct: 79 SLKLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYL 138
Query: 134 IIIIIIIIIIIII 146
++ +I+++ I I
Sbjct: 139 LLTLIVVVKITNI 151
Score = 49.4 bits (119), Expect = 7e-07
Identities = 16/114 (14%), Positives = 56/114 (49%), Gaps = 25/114 (21%)
Query: 75 KYIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIII-------IIIIIII--- 119
K +++++++I+ II + + + +I+II I+I +++ +++ I+ +I +
Sbjct: 1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGM 60
Query: 120 -IIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
++ I I + ++I+ ++++++++ I + +F +
Sbjct: 61 LVLFIYITSLASNEKFKFSLKLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFE 114
Score = 49.0 bits (118), Expect = 9e-07
Identities = 8/75 (10%), Positives = 34/75 (45%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ ++I+ ++++++++ I + + + ++I + +II
Sbjct: 77 KFSLKLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMII 136
Query: 134 IIIIIIIIIIIIIII 148
+++ +I+++ I I
Sbjct: 137 YLLLTLIVVVKITNI 151
Score = 48.6 bits (117), Expect = 1e-06
Identities = 9/75 (12%), Positives = 36/75 (48%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
K+ + ++I+ ++++++++ I + + + ++I + +II
Sbjct: 77 KFSLKLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMII 136
Query: 135 IIIIIIIIIIIIIII 149
+++ +I+++ I I
Sbjct: 137 YLLLTLIVVVKITNI 151
Score = 47.9 bits (115), Expect = 2e-06
Identities = 8/75 (10%), Positives = 35/75 (46%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
K+ + ++I+ ++++++++ I + + + ++I + +
Sbjct: 75 KFKFSLKLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFM 134
Query: 135 IIIIIIIIIIIIIII 149
II +++ +I+++ I
Sbjct: 135 IIYLLLTLIVVVKIT 149
Score = 47.9 bits (115), Expect = 2e-06
Identities = 7/75 (9%), Positives = 34/75 (45%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ ++I+ ++++++++ I + + + ++I + +II
Sbjct: 78 FSLKLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIY 137
Query: 141 IIIIIIIIIDLIFDF 155
+++ +I+++ + F
Sbjct: 138 LLLTLIVVVKITNIF 152
Score = 44.0 bits (105), Expect = 4e-05
Identities = 13/106 (12%), Positives = 43/106 (40%), Gaps = 22/106 (20%)
Query: 77 IIIIIIIIIIIIIII----------IIIIIIII----IIIIIIIIII--------IIIII 114
+I+II I+I +++ I+ +I + ++ I I + + ++I
Sbjct: 25 GLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLI 84
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ ++++++++ I + + +++F M +
Sbjct: 85 LFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLI 130
>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family.
Length = 221
Score = 51.3 bits (123), Expect = 4e-07
Identities = 16/95 (16%), Positives = 48/95 (50%), Gaps = 19/95 (20%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII- 132
KY++ ++ ++ +++ + ++ + I +++I + I + I + I+II++ +II+++
Sbjct: 2 LKYLLFLLNLLFLLLGLALLAVGIWLLVIAKDYLAIALNDSIRALYILIIVLGVIILLVG 61
Query: 133 ------------------IIIIIIIIIIIIIIIII 149
I+++I+ I+ I I+
Sbjct: 62 FLGCCGAIKESRCLLLTYFILLLILFILEIAAGIL 96
Score = 38.2 bits (89), Expect = 0.009
Identities = 14/74 (18%), Positives = 38/74 (51%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
++ +K + I + I + I+II++ +II+++ + I +++ I+++I
Sbjct: 26 WLLVIAKDYLAIALNDSIRALYILIIVLGVIILLVGFLGCCGAIKESRCLLLTYFILLLI 85
Query: 129 IIIIIIIIIIIIII 142
+ I+ I I+ +
Sbjct: 86 LFILEIAAGILAFV 99
Score = 32.0 bits (73), Expect = 0.83
Identities = 13/63 (20%), Positives = 33/63 (52%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ R+ YI+II++ +II+++ + I +++ I+++I+ I+ I I+
Sbjct: 37 IALNDSIRALYILIIVLGVIILLVGFLGCCGAIKESRCLLLTYFILLLILFILEIAAGIL 96
Query: 126 III 128
+
Sbjct: 97 AFV 99
>gnl|CDD|216594 pfam01594, UPF0118, Domain of unknown function DUF20. This
transmembrane region is found in putative permeases and
predicted transmembrane proteins it has no known
function. It is not clear what source suggested that
these proteins may be permeases and this information
should be treated with caution.
Length = 327
Score = 52.2 bits (126), Expect = 4e-07
Identities = 10/83 (12%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIII 129
+++I+I +++++ I +++ ++I +++ ++ ++ + + I++++++
Sbjct: 1 LLLILIFLLLLLAFYWFIPDLLVPLLIALVLAYLLNPVVRFLKRRGIPRSLAILLVLLLF 60
Query: 130 IIIIIIIIIIIIIIIIIIIIDLI 152
++ ++++ +++I ++II + LI
Sbjct: 61 LVALVLLGLLLIPLLIIQLTQLI 83
Score = 50.7 bits (122), Expect = 1e-06
Identities = 9/84 (10%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIII 128
+I+I +++++ I +++ ++I +++ ++ ++ + + I++++++ ++
Sbjct: 3 LILIFLLLLLAFYWFIPDLLVPLLIALVLAYLLNPVVRFLKRRGIPRSLAILLVLLLFLV 62
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLI 152
++++ +++I ++II + +I +
Sbjct: 63 ALVLLGLLLIPLLIIQLTQLIKSL 86
Score = 49.5 bits (119), Expect = 3e-06
Identities = 11/108 (10%), Positives = 55/108 (50%), Gaps = 18/108 (16%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIII 123
+++I+I +++++ I +++ ++I +++ ++ + I++++++
Sbjct: 1 LLLILIFLLLLLAFYWFIPDLLVPLLIALVLAYLLNPVVRFLKRRGIPRSLAILLVLLLF 60
Query: 124 IIIIIIIIIIIIIIIIIIIIIIII----IIDLIFDFTFMYLKEFRVEQ 167
++ ++++ +++I ++II + +I ID + ++ + +
Sbjct: 61 LVALVLLGLLLIPLLIIQLTQLIKSLPQYIDSLLNWLNELPELLPFLE 108
Score = 46.4 bits (111), Expect = 3e-05
Identities = 18/92 (19%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIII--IIIII 124
+ + ++ +I+ +II ++ I ++I+ +++ +++ + +I I +II+I
Sbjct: 185 REINDTLGGYLLGQVIVALIIGVLTFIGLLILGVPYALLLALLVGLANLIPYIGPVIILI 244
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
I I ++ I +I++I +++I I D
Sbjct: 245 PIAIYALLTGGIWAGLIVLIGVLLIQQIEDNI 276
Score = 39.1 bits (92), Expect = 0.005
Identities = 16/85 (18%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------IIIIIIIIIIII 125
II+I I I ++ I +I++I +++I I I+ + ++I++ +I
Sbjct: 240 VIILIPIAIYALLTGGIWAGLIVLIGVLLIQQIEDNILRPKLMGKRLGLHPLVILLSLIG 299
Query: 126 IIIIIIIIIIIIIIIIIIIIIIIID 150
+ ++ +I+ + ++ I+D
Sbjct: 300 GGSLFGLVGLILAPPLTAVLKAILD 324
Score = 38.7 bits (91), Expect = 0.008
Identities = 11/92 (11%), Positives = 44/92 (47%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
R+ + I++++++ ++ ++++ +++I ++II + +I + I ++ + +
Sbjct: 42 LKRRGIPRSLAILLVLLLFLVALVLLGLLLIPLLIIQLTQLIKSLPQYIDSLLNWLNELP 101
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
++ + +I + + I+ I L
Sbjct: 102 ELLPFLENVIQQLDSSLSDILSNILSSILNSL 133
Score = 37.6 bits (88), Expect = 0.016
Identities = 15/88 (17%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIII 124
+II+I I I ++ I +I++I +++I I I+ ++I++ +I
Sbjct: 240 VIILIPIAIYALLTGGIWAGLIVLIGVLLIQQIEDNILRPKLMGKRLGLHPLVILLSLIG 299
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ ++ +I+ + ++ I+
Sbjct: 300 GGSLFGLVGLILAPPLTAVLKAILDAYR 327
Score = 35.3 bits (82), Expect = 0.087
Identities = 17/81 (20%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
Y +++ +++ + +I I +II+I I I ++ I +I++I +++I I I+
Sbjct: 219 PYALLLALLVGLANLIPYIGPVIILIPIAIYALLTGGIWAGLIVLIGVLLIQQIEDNILR 278
Query: 135 IIII--IIIIIIIIIIIDLIF 153
++ + + ++I++ LI
Sbjct: 279 PKLMGKRLGLHPLVILLSLIG 299
Score = 34.9 bits (81), Expect = 0.12
Identities = 16/120 (13%), Positives = 55/120 (45%), Gaps = 26/120 (21%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------------- 112
F+++R + I++++++ ++ ++++ +++I ++II + +I
Sbjct: 41 FLKRRGIPRSLAILLVLLLFLVALVLLGLLLIPLLIIQLTQLIKSLPQYIDSLLNWLNEL 100
Query: 113 --------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD--FTFMYLKE 162
+I + + I+ I+ I+ ++ ++ + +++ LI TF +L +
Sbjct: 101 PELLPFLENVIQQLDSSLSDILSNILSSILNSLLSLLASLPGLLLQLILVLVLTFFFLLD 160
>gnl|CDD|218918 pfam06161, DUF975, Protein of unknown function (DUF975). Family of
uncharacterized bacterial proteins.
Length = 251
Score = 50.9 bits (122), Expect = 6e-07
Identities = 18/78 (23%), Positives = 42/78 (53%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+++++I+ I + + +I I ++IIII + + I +++ I I+I +++I++I
Sbjct: 106 LLLLLILKGIFLFLWSLIATIGLLIIIISSHLALSSSEIEDNLMVFGIGILISLLLILLI 165
Query: 145 IIIIIDLIFDFTFMYLKE 162
III + L +
Sbjct: 166 PGIIIGYAYSQVEYILYD 183
Score = 48.2 bits (115), Expect = 5e-06
Identities = 20/73 (27%), Positives = 42/73 (57%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
F KR +++++I+ I + + +I I ++IIII + + I +++ I I+I
Sbjct: 98 FKDKRFGKLLLLLILKGIFLFLWSLIATIGLLIIIISSHLALSSSEIEDNLMVFGIGILI 157
Query: 129 IIIIIIIIIIIII 141
+++I++I III
Sbjct: 158 SLLLILLIPGIII 170
Score = 46.7 bits (111), Expect = 2e-05
Identities = 17/65 (26%), Positives = 39/65 (60%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+++++I+ I + + +I I ++IIII + + I +++ I I+I +++I++I
Sbjct: 106 LLLLLILKGIFLFLWSLIATIGLLIIIISSHLALSSSEIEDNLMVFGIGILISLLLILLI 165
Query: 138 IIIII 142
III
Sbjct: 166 PGIII 170
Score = 46.7 bits (111), Expect = 2e-05
Identities = 17/65 (26%), Positives = 39/65 (60%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+++++I+ I + + +I I ++IIII + + I +++ I I+I +++I++I
Sbjct: 106 LLLLLILKGIFLFLWSLIATIGLLIIIISSHLALSSSEIEDNLMVFGIGILISLLLILLI 165
Query: 139 IIIII 143
III
Sbjct: 166 PGIII 170
Score = 46.7 bits (111), Expect = 2e-05
Identities = 17/65 (26%), Positives = 39/65 (60%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+++++I+ I + + +I I ++IIII + + I +++ I I+I +++I++I
Sbjct: 106 LLLLLILKGIFLFLWSLIATIGLLIIIISSHLALSSSEIEDNLMVFGIGILISLLLILLI 165
Query: 140 IIIII 144
III
Sbjct: 166 PGIII 170
Score = 46.7 bits (111), Expect = 2e-05
Identities = 17/65 (26%), Positives = 39/65 (60%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+++++I+ I + + +I I ++IIII + + I +++ I I+I +++I++I
Sbjct: 106 LLLLLILKGIFLFLWSLIATIGLLIIIISSHLALSSSEIEDNLMVFGIGILISLLLILLI 165
Query: 141 IIIII 145
III
Sbjct: 166 PGIII 170
Score = 46.7 bits (111), Expect = 2e-05
Identities = 17/65 (26%), Positives = 39/65 (60%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+++++I+ I + + +I I ++IIII + + I +++ I I+I +++I++I
Sbjct: 106 LLLLLILKGIFLFLWSLIATIGLLIIIISSHLALSSSEIEDNLMVFGIGILISLLLILLI 165
Query: 142 IIIII 146
III
Sbjct: 166 PGIII 170
Score = 46.7 bits (111), Expect = 2e-05
Identities = 17/65 (26%), Positives = 39/65 (60%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+++++I+ I + + +I I ++IIII + + I +++ I I+I +++I++I
Sbjct: 106 LLLLLILKGIFLFLWSLIATIGLLIIIISSHLALSSSEIEDNLMVFGIGILISLLLILLI 165
Query: 143 IIIII 147
III
Sbjct: 166 PGIII 170
Score = 45.1 bits (107), Expect = 4e-05
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I+ I + + +I I ++IIII + + I +++ I I+I +++I++I III
Sbjct: 111 ILKGIFLFLWSLIATIGLLIIIISSHLALSSSEIEDNLMVFGIGILISLLLILLIPGIII 170
Query: 138 IIIIIIIIIIIID 150
+ I+ D
Sbjct: 171 GYAYSQVEYILYD 183
Score = 31.3 bits (71), Expect = 1.7
Identities = 11/63 (17%), Positives = 30/63 (47%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++++++I++I + +I I I + I ++ I +++ +I + I I
Sbjct: 20 NAVLLLLLILLIEFSLSFLISNIGSIGESSFLSITLLAYIFPLLVFLIGTALTISAIFYY 79
Query: 149 IDL 151
+ L
Sbjct: 80 LKL 82
>gnl|CDD|148697 pfam07242, DUF1430, Protein of unknown function (DUF1430). This
family represents the C-terminus (approximately 120
residues) of a number of hypothetical bacterial proteins
of unknown function. These are possibly membrane
proteins involved in immunity.
Length = 100
Score = 48.0 bits (115), Expect = 6e-07
Identities = 18/95 (18%), Positives = 49/95 (51%), Gaps = 19/95 (20%)
Query: 83 IIIIIIIIIIIIIIIII-------IIIIIII------------IIIIIIIIIIIIIIIII 123
II++II +++ ++++ I+I I +II +I+ + +I+ I
Sbjct: 1 IILLIISLLLFYQMVLLYFEQNKKKILIKRIHGYSFFKRHKTYLIIQLIVWVFGLILAFI 60
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+ II++ ++++++I +++I++I F+
Sbjct: 61 LTKSNIILLFVLVLLLIELLLILLIQMKKEKKKFI 95
Score = 45.7 bits (109), Expect = 3e-06
Identities = 13/63 (20%), Positives = 38/63 (60%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
F ++ Y+II +I+ + +I+ I+ II++ ++++++I +++I++I + I
Sbjct: 36 FFKRHKTYLIIQLIVWVFGLILAFILTKSNIILLFVLVLLLIELLLILLIQMKKEKKKFI 95
Query: 129 III 131
++
Sbjct: 96 SVL 98
Score = 45.3 bits (108), Expect = 4e-06
Identities = 18/98 (18%), Positives = 47/98 (47%), Gaps = 25/98 (25%)
Query: 77 IIIIIIIIIIII-------------IIIIII------------IIIIIIIIIIIIIIIII 111
II++II +++ I+I I +II +I+ + +I+ I
Sbjct: 1 IILLIISLLLFYQMVLLYFEQNKKKILIKRIHGYSFFKRHKTYLIIQLIVWVFGLILAFI 60
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ II++ ++++++I +++I++I + I ++
Sbjct: 61 LTKSNIILLFVLVLLLIELLLILLIQMKKEKKKFISVL 98
Score = 41.0 bits (97), Expect = 2e-04
Identities = 18/90 (20%), Positives = 45/90 (50%), Gaps = 19/90 (21%)
Query: 92 IIIIIIIIIIIIIIIII-------IIIIIII------------IIIIIIIIIIIIIIIII 132
II++II +++ ++++ I+I I +II +I+ + +I+ I
Sbjct: 1 IILLIISLLLFYQMVLLYFEQNKKKILIKRIHGYSFFKRHKTYLIIQLIVWVFGLILAFI 60
Query: 133 IIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
+ II++ ++++++I+L+ KE
Sbjct: 61 LTKSNIILLFVLVLLLIELLLILLIQMKKE 90
>gnl|CDD|177217 MTH00161, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 113
Score = 47.8 bits (115), Expect = 8e-07
Identities = 22/112 (19%), Positives = 52/112 (46%), Gaps = 27/112 (24%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIII---------------------------IIII 109
+I+II++II++I II++I+ ++ I+ +I I
Sbjct: 1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAI 60
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
I +I + I +++ +I I ++ +I I+I+++ L +++ L+
Sbjct: 61 IFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQGALE 112
Score = 34.8 bits (81), Expect = 0.026
Identities = 10/48 (20%), Positives = 26/48 (54%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
++I II +I + I +++ +I I ++ +I I+I+++ +
Sbjct: 56 FLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLY 103
Score = 29.4 bits (67), Expect = 2.4
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+I+II++II++I II++I+ + + +E
Sbjct: 1 MILIILLIILLISIILMILASLLSKKSIMDREK 33
>gnl|CDD|205807 pfam13630, SdpI, SdpI/YhfL protein family. This family of proteins
includes the SdpI and YhfL proteins from B. subtilis.
The SdpI protein is a multipass integral membrane
protein that protects toxin-producing cells from being
killed. Killing is mediated by the exported toxic
protein SdpC an extracellular protein that induces the
synthesis of an immunity protein.
Length = 72
Score = 45.6 bits (109), Expect = 2e-06
Identities = 12/41 (29%), Positives = 29/41 (70%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
K II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 31 GKLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.5 bits (106), Expect = 5e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 115
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 117
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 119
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 44.1 bits (105), Expect = 6e-06
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ II +I++++ ++I+ I+ +I++++I++ +II II
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIYS 71
Score = 39.9 bits (94), Expect = 2e-04
Identities = 10/39 (25%), Positives = 30/39 (76%)
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ II +I++++ ++I+ I+ +I++++I++ +II +I+
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIY 70
Score = 31.0 bits (71), Expect = 0.32
Identities = 8/39 (20%), Positives = 25/39 (64%)
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+ II +I++++ ++I+ I+ +I++++I + +Y
Sbjct: 32 KLFIIGGLILLLLGLLILDILFLILLLLILVAVIIPIIY 70
>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 316
Score = 49.9 bits (119), Expect = 2e-06
Identities = 10/85 (11%), Positives = 52/85 (61%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
F+ K +++ ++ +++I++ ++++++I++I ++I ++ +++ ++++ +I +
Sbjct: 18 FLLKLLLRLLLYVLNGLLLILLRKLLLLLLILLIAFLLIAYLVKLLLRSLLLLKALIRRL 77
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIF 153
+ + + ++ I+I+++ L+
Sbjct: 78 ARETTLSVFLSNLLRILILVVALLI 102
Score = 49.9 bits (119), Expect = 2e-06
Identities = 8/78 (10%), Positives = 49/78 (62%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+++I++ ++++++I++I ++I ++ +++ ++++ +I + + + +
Sbjct: 30 VLNGLLLILLRKLLLLLLILLIAFLLIAYLVKLLLRSLLLLKALIRRLARETTLSVFLSN 89
Query: 135 IIIIIIIIIIIIIIIDLI 152
++ I+I+++ ++I++ ++
Sbjct: 90 LLRILILVVALLIVLSVL 107
Score = 49.9 bits (119), Expect = 2e-06
Identities = 8/84 (9%), Positives = 51/84 (60%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ + ++I++ ++++++I++I ++I ++ +++ ++++ +I + + +
Sbjct: 27 LLYVLNGLLLILLRKLLLLLLILLIAFLLIAYLVKLLLRSLLLLKALIRRLARETTLSVF 86
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLI 152
+ ++ I+I+++ ++I++ ++ +
Sbjct: 87 LSNLLRILILVVALLIVLSVLGVQ 110
Score = 49.5 bits (118), Expect = 3e-06
Identities = 8/79 (10%), Positives = 48/79 (60%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
I++ ++++++I++I ++I ++ +++ ++++ +I + + + + ++
Sbjct: 33 GLLLILLRKLLLLLLILLIAFLLIAYLVKLLLRSLLLLKALIRRLARETTLSVFLSNLLR 92
Query: 133 IIIIIIIIIIIIIIIIIDL 151
I+I+++ ++I++ ++ + +
Sbjct: 93 ILILVVALLIVLSVLGVQV 111
Score = 49.1 bits (117), Expect = 4e-06
Identities = 10/87 (11%), Positives = 50/87 (57%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+++I++ ++++++I++I ++I ++ +++ ++++ +I + + + +
Sbjct: 28 LYVLNGLLLILLRKLLLLLLILLIAFLLIAYLVKLLLRSLLLLKALIRRLARETTLSVFL 87
Query: 132 IIIIIIIIIIIIIIIIIIDLIFDFTFM 158
++ I+I+++ ++I++ L T +
Sbjct: 88 SNLLRILILVVALLIVLSVLGVQVTSL 114
Score = 48.8 bits (116), Expect = 5e-06
Identities = 10/71 (14%), Positives = 48/71 (67%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I ++I +II+ +++I ++ +++ +++ ++ +++I++ ++++++I++I ++I ++ +
Sbjct: 3 IAVVINLIILELLLIFLLKLLLRLLLYVLNGLLLILLRKLLLLLLILLIAFLLIAYLVKL 62
Query: 147 IIIDLIFDFTF 157
++ L+
Sbjct: 63 LLRSLLLLKAL 73
Score = 48.8 bits (116), Expect = 5e-06
Identities = 7/81 (8%), Positives = 46/81 (56%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ ++++++I++I ++I ++ +++ ++++ +I + + + + +
Sbjct: 31 LNGLLLILLRKLLLLLLILLIAFLLIAYLVKLLLRSLLLLKALIRRLARETTLSVFLSNL 90
Query: 129 IIIIIIIIIIIIIIIIIIIII 149
+ I+I+++ ++I++ ++ + +
Sbjct: 91 LRILILVVALLIVLSVLGVQV 111
Score = 47.2 bits (112), Expect = 1e-05
Identities = 10/75 (13%), Positives = 50/75 (66%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I ++I +II+ +++I ++ +++ +++ ++ +++I++ ++++++I++I ++I ++ +
Sbjct: 3 IAVVINLIILELLLIFLLKLLLRLLLYVLNGLLLILLRKLLLLLLILLIAFLLIAYLVKL 62
Query: 144 IIIIIIDLIFDFTFM 158
++ ++ L +
Sbjct: 63 LLRSLLLLKALIRRL 77
Score = 47.2 bits (112), Expect = 1e-05
Identities = 11/79 (13%), Positives = 54/79 (68%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I ++I +II+ +++I ++ +++ +++ ++ +++I++ ++++++I++I ++I ++ +
Sbjct: 3 IAVVINLIILELLLIFLLKLLLRLLLYVLNGLLLILLRKLLLLLLILLIAFLLIAYLVKL 62
Query: 138 IIIIIIIIIIIIDLIFDFT 156
++ ++++ +I + T
Sbjct: 63 LLRSLLLLKALIRRLARET 81
Score = 46.8 bits (111), Expect = 2e-05
Identities = 11/84 (13%), Positives = 53/84 (63%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I ++I +II+ +++I ++ +++ +++ ++ +++I++ ++++++I++I ++I ++ +
Sbjct: 3 IAVVINLIILELLLIFLLKLLLRLLLYVLNGLLLILLRKLLLLLLILLIAFLLIAYLVKL 62
Query: 140 IIIIIIIIIIDLIFDFTFMYLKEF 163
++ ++++ + L F
Sbjct: 63 LLRSLLLLKALIRRLARETTLSVF 86
Score = 46.1 bits (109), Expect = 3e-05
Identities = 11/76 (14%), Positives = 53/76 (69%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I ++I +II+ +++I ++ +++ +++ ++ +++I++ ++++++I++I ++I ++ +
Sbjct: 3 IAVVINLIILELLLIFLLKLLLRLLLYVLNGLLLILLRKLLLLLLILLIAFLLIAYLVKL 62
Query: 137 IIIIIIIIIIIIIDLI 152
++ ++++ +I L
Sbjct: 63 LLRSLLLLKALIRRLA 78
Score = 45.7 bits (108), Expect = 5e-05
Identities = 9/77 (11%), Positives = 51/77 (66%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+I +II+ +++I ++ +++ +++ ++ +++I++ ++++++I++I ++I ++ +++
Sbjct: 5 VVINLIILELLLIFLLKLLLRLLLYVLNGLLLILLRKLLLLLLILLIAFLLIAYLVKLLL 64
Query: 136 IIIIIIIIIIIIIIDLI 152
++++ +I +
Sbjct: 65 RSLLLLKALIRRLARET 81
Score = 44.9 bits (106), Expect = 9e-05
Identities = 12/128 (9%), Positives = 60/128 (46%), Gaps = 32/128 (25%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------------III 113
+ + Y++ +++I++ ++++++I++I ++I ++ ++
Sbjct: 23 LLRLLLYVLNGLLLILLRKLLLLLLILLIAFLLIAYLVKLLLRSLLLLKALIRRLARETT 82
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------------IIIDLIFDFTF 157
+ + + ++ I+I+++ ++I++ ++ + + ++ ++ +LI
Sbjct: 83 LSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFL 142
Query: 158 MYLKEFRV 165
+ + F+V
Sbjct: 143 LLERPFKV 150
Score = 44.9 bits (106), Expect = 1e-04
Identities = 11/72 (15%), Positives = 47/72 (65%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I ++I +II+ +++I ++ +++ +++ ++ +++I++ ++++++I++I ++I + +
Sbjct: 3 IAVVINLIILELLLIFLLKLLLRLLLYVLNGLLLILLRKLLLLLLILLIAFLLIAYLVKL 62
Query: 153 FDFTFMYLKEFR 164
+ + LK
Sbjct: 63 LLRSLLLLKALI 74
Score = 43.8 bits (103), Expect = 2e-04
Identities = 11/77 (14%), Positives = 49/77 (63%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
I ++I +II+ +++I ++ +++ +++ ++ +++I++ ++++++I++I ++I ++
Sbjct: 3 IAVVINLIILELLLIFLLKLLLRLLLYVLNGLLLILLRKLLLLLLILLIAFLLIAYLVKL 62
Query: 151 LIFDFTFMYLKEFRVEQ 167
L+ + R+ +
Sbjct: 63 LLRSLLLLKALIRRLAR 79
Score = 33.0 bits (75), Expect = 0.56
Identities = 7/73 (9%), Positives = 41/73 (56%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+R+ ++ + + + ++ I+I+++ ++I++ ++ + + ++ + + + I + +
Sbjct: 72 ALIRRLARETTLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQD 131
Query: 128 IIIIIIIIIIIII 140
++ +I I +++
Sbjct: 132 LLSNLIAGIFLLL 144
Score = 31.0 bits (70), Expect = 1.9
Identities = 7/85 (8%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ + + + +I + + + + ++ I+I+++ ++I++ ++ + + ++ +
Sbjct: 61 KLLLRSLLLLKALIRRLARETTLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGA 120
Query: 128 IIIIIIIII--IIIIIIIIIIIIID 150
+ + I + + ++ +I I ++++
Sbjct: 121 LGLAIGLALQDLLSNLIAGIFLLLE 145
Score = 30.3 bits (68), Expect = 3.6
Identities = 9/84 (10%), Positives = 40/84 (47%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
R + + + ++ I+I+++ ++I++ ++ + + ++ + + + I + +
Sbjct: 71 KALIRRLARETTLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQ 130
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLI 152
++ +I I +++ + D I
Sbjct: 131 DLLSNLIAGIFLLLERPFKVGDWI 154
Score = 29.5 bits (66), Expect = 5.4
Identities = 8/90 (8%), Positives = 44/90 (48%)
Query: 52 VDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 111
+ L ++ + + +R + + + ++ I+I+++ ++I++ ++ + + +
Sbjct: 55 LIAYLVKLLLRSLLLLKALIRRLARETTLSVFLSNLLRILILVVALLIVLSVLGVQVTSL 114
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ + + + I + + ++ +I I +++
Sbjct: 115 LAGLGALGLAIGLALQDLLSNLIAGIFLLL 144
>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel. The
family carries eight putative transmembrane domains,
and, although it has no similarity to other known
channel proteins, it is clearly a calcium-activated
ionic channel. It is expressed in various secretory
epithelia, the retina and sensory neurons, and mediates
receptor-activated chloride currents in diverse
physiological processes.
Length = 449
Score = 50.3 bits (121), Expect = 2e-06
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 43 SQLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII 102
+ +GD ++D I T + E K ++ ++ I ++++ I ++I III I
Sbjct: 92 PEFKGDEIEIDPI------TGEL--EPYYPPWKRLLRQLLSIPVVLLFIGLVIGIIIGIF 143
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I+ I + + + + I+ +II+I+ I
Sbjct: 144 ILRIFLSEVYSGPSFKQSLESFLPAILNSVIILILNFI 181
Score = 49.9 bits (120), Expect = 3e-06
Identities = 14/66 (21%), Positives = 36/66 (54%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++ ++ I ++++ I ++I III I I+ I + + + + I+ +II+I
Sbjct: 118 LLRQLLSIPVVLLFIGLVIGIIIGIFILRIFLSEVYSGPSFKQSLESFLPAILNSVIILI 177
Query: 149 IDLIFD 154
++ I++
Sbjct: 178 LNFIYE 183
Score = 45.7 bits (109), Expect = 6e-05
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
++ ++ I ++++ I ++I III I I+ I + + + + I+ +II+I
Sbjct: 118 LLRQLLSIPVVLLFIGLVIGIIIGIFILRIFLSEVYSGPSFKQSLESFLPAILNSVIILI 177
Query: 141 IIII 144
+ I
Sbjct: 178 LNFI 181
Score = 45.7 bits (109), Expect = 6e-05
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
++ ++ I ++++ I ++I III I I+ I + + + + I+ +II+I
Sbjct: 118 LLRQLLSIPVVLLFIGLVIGIIIGIFILRIFLSEVYSGPSFKQSLESFLPAILNSVIILI 177
Query: 142 IIII 145
+ I
Sbjct: 178 LNFI 181
Score = 45.7 bits (109), Expect = 6e-05
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++ ++ I ++++ I ++I III I I+ I + + + + I+ +II+I
Sbjct: 118 LLRQLLSIPVVLLFIGLVIGIIIGIFILRIFLSEVYSGPSFKQSLESFLPAILNSVIILI 177
Query: 143 IIII 146
+ I
Sbjct: 178 LNFI 181
Score = 45.7 bits (109), Expect = 6e-05
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++ ++ I ++++ I ++I III I I+ I + + + + I+ +II+I
Sbjct: 118 LLRQLLSIPVVLLFIGLVIGIIIGIFILRIFLSEVYSGPSFKQSLESFLPAILNSVIILI 177
Query: 144 IIII 147
+ I
Sbjct: 178 LNFI 181
Score = 45.7 bits (109), Expect = 6e-05
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
++ ++ I ++++ I ++I III I I+ I + + + + I+ +II+I
Sbjct: 118 LLRQLLSIPVVLLFIGLVIGIIIGIFILRIFLSEVYSGPSFKQSLESFLPAILNSVIILI 177
Query: 145 IIII 148
+ I
Sbjct: 178 LNFI 181
Score = 45.7 bits (109), Expect = 6e-05
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++ ++ I ++++ I ++I III I I+ I + + + + I+ +II+I
Sbjct: 118 LLRQLLSIPVVLLFIGLVIGIIIGIFILRIFLSEVYSGPSFKQSLESFLPAILNSVIILI 177
Query: 146 IIII 149
+ I
Sbjct: 178 LNFI 181
Score = 34.5 bits (80), Expect = 0.18
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
++ ++ I ++++ I ++I III I I+ I + + F +
Sbjct: 118 LLRQLLSIPVVLLFIGLVIGIIIGIFILRIFLSEVYSGPSFKQSLE 163
Score = 34.1 bits (79), Expect = 0.27
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
++ ++ I ++++ I ++I III I I+ I + L+ F
Sbjct: 118 LLRQLLSIPVVLLFIGLVIGIIIGIFILRIFLSEVYSGPSFKQSLESF 165
Score = 33.0 bits (76), Expect = 0.58
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
++ ++ I ++++ I ++I III I I+ I + + F
Sbjct: 118 LLRQLLSIPVVLLFIGLVIGIIIGIFILRIFLSEVYSGPSFKQSLES 164
>gnl|CDD|227725 COG5438, COG5438, Predicted multitransmembrane protein [Function
unknown].
Length = 385
Score = 50.1 bits (120), Expect = 2e-06
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 26 SNADLNSMSISALKCIQSQLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIII 85
+ L SI K + + +G+L K++ + A R +I I
Sbjct: 64 NRQVLQKQSIKV-KILNGEYKGELVKINNTVNESQAHN----INTRVGDVVLIEISGNTP 118
Query: 86 IIIII-----IIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I + I++I+ I+++II+ + +I +++ + IIII+I +II
Sbjct: 119 SYYIYDLKRDNALFILLILFIVLMIIVGGKRGLKSLIGLVVNLFAIIIILIPLIINGFNP 178
Query: 136 IIIIIIIIIIIIIIDLIF 153
I++ II+ +II I L
Sbjct: 179 ILVFIILCVIITAITLFM 196
Score = 48.9 bits (117), Expect = 6e-06
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIII 121
+ KR +I +++ + IIII+I +II I++ II+ +II I + ++ I
Sbjct: 142 MIIVGGKRGLKSLIGLVVNLFAIIIILIPLIINGFNPILVFIILCVIITAITLFMVNGIN 201
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
+ I I+ ++ II+ I I + +L
Sbjct: 202 KKTLAAFIGTILGTLLSIILAYISIYMTNL 231
Score = 31.2 bits (71), Expect = 2.1
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 115 IIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ I++I+ I+++II+ + +I +++ + IIII+I +I F + +
Sbjct: 131 LFILLILFIVLMIIVGGKRGLKSLIGLVVNLFAIIIILIPLIINGFNPILV 181
>gnl|CDD|221569 pfam12420, DUF3671, Protein of unknown function. This domain
family is found in eukaryotes, and is typically between
96 and 116 amino acids in length.
Length = 106
Score = 46.5 bits (111), Expect = 2e-06
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
KY +I I+ ++ +I +II I+ + I I+ + I II+ I++++II I+I +I
Sbjct: 44 KYGLIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLLVIIYILIKVI 103
Score = 46.1 bits (110), Expect = 3e-06
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 71 RKRSKYIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+K+ K II +I I+ ++ +I +II I+ + I I+ + I II+ I+++
Sbjct: 34 KKKFKKIIFKKYGLIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLL 93
Query: 127 IIIIIIIIII 136
+II I+I +I
Sbjct: 94 VIIYILIKVI 103
Score = 45.0 bits (107), Expect = 7e-06
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 72 KRSKYIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ K+ II +I I+ ++ +I +II I+ + I I+ + I II+ I++
Sbjct: 33 DKKKFKKIIFKKYGLIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVL 92
Query: 128 IIIIIIIIIII 138
++II I+I +I
Sbjct: 93 LVIIYILIKVI 103
Score = 44.2 bits (105), Expect = 1e-05
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 74 SKYIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
K II +I I+ ++ +I +II I+ + I I+ + I II+ I+++
Sbjct: 34 KKKFKKIIFKKYGLIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLL 93
Query: 130 IIIIIIIIII 139
+II I+I +I
Sbjct: 94 VIIYILIKVI 103
Score = 43.1 bits (102), Expect = 3e-05
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+I I+ ++ +I +II I+ + I I+ + I II+ I++++II I+I +I
Sbjct: 47 LIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLLVIIYILIKVI 103
Score = 43.1 bits (102), Expect = 3e-05
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+I I+ ++ +I +II I+ + I I+ + I II+ I++++II I+I +I
Sbjct: 47 LIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLLVIIYILIKVI 103
Score = 43.1 bits (102), Expect = 3e-05
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+I I+ ++ +I +II I+ + I I+ + I II+ I++++II I+I +I
Sbjct: 47 LIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLLVIIYILIKVI 103
Score = 43.1 bits (102), Expect = 3e-05
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+I I+ ++ +I +II I+ + I I+ + I II+ I++++II I+I +I
Sbjct: 47 LIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLLVIIYILIKVI 103
Score = 43.1 bits (102), Expect = 3e-05
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+I I+ ++ +I +II I+ + I I+ + I II+ I++++II I+I +I
Sbjct: 47 LIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLLVIIYILIKVI 103
Score = 43.1 bits (102), Expect = 3e-05
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+I I+ ++ +I +II I+ + I I+ + I II+ I++++II I+I +I
Sbjct: 47 LIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLLVIIYILIKVI 103
Score = 43.1 bits (102), Expect = 3e-05
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+I I+ ++ +I +II I+ + I I+ + I II+ I++++II I+I +I
Sbjct: 47 LIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLLVIIYILIKVI 103
Score = 43.1 bits (102), Expect = 4e-05
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+I I+ ++ +I +II I+ + I I+ + I II+ I++++II I+I +I
Sbjct: 47 LIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLLVIIYILIKVI 103
Score = 36.9 bits (86), Expect = 0.005
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+I I+ ++ +I +II I+ + I I+ + I II+ I++++I I
Sbjct: 47 LIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLLVIIYIL 99
Score = 35.4 bits (82), Expect = 0.018
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+I I+ ++ +I +II I+ + I I+ + I II+ I+++ +I+
Sbjct: 47 LIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLLVIIYILI 100
Score = 28.0 bits (63), Expect = 5.3
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 117 IIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIDLIFDFTFMYL 160
+I I+ ++ +I +II I+ I+ + I II+ I +Y+
Sbjct: 47 LIFILPSLVPLIGLIIPILFSANVKIPYILPGLNGIFFIILATIVLLVIIYI 98
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and
metabolism / General function prediction only].
Length = 493
Score = 50.4 bits (121), Expect = 2e-06
Identities = 22/109 (20%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+F+ R I+ I+ +III+ I I + ++ +++ ++ I + I+I +I+ +
Sbjct: 109 DFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVTGILIGALIVAL 168
Query: 128 IIIII-------------IIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+ +I++I +I+I I+++I+ F F L
Sbjct: 169 YTFLGGLRAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASL 217
Score = 33.8 bits (78), Expect = 0.37
Identities = 9/95 (9%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------- 124
K I +++++I ++ +++ ++ I+ ++ + + + +++ +
Sbjct: 369 KELVRIGRVVVLVIALLALLLALLPPSSILGLVSLALAGFGAQFLPALLLGLFWKRATKR 428
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
I +I +I++++ ++ + F +Y
Sbjct: 429 GAIAGMIAGLIVVLLTWLLFLKSFPYGAFALGGLY 463
>gnl|CDD|222582 pfam14184, YrvL, Regulatory protein YrvL. YrvL prevents expression
and activity of the YrvI sigma factor. It may function
as an anti-sigma factor.
Length = 134
Score = 46.5 bits (111), Expect = 4e-06
Identities = 16/96 (16%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIII 124
K II III + +II+ II + + I ++ +++ +I +I+ + + +
Sbjct: 1 LKEKFIIFIIIALALIIVFAIIFFVGVGIFSLLGFEYESIGALLLFFLIFLILGLPLELF 60
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+++ ++ + I + ++ I+++I + ++
Sbjct: 61 EKVLLKPLLKLRISKWLYKLLAFILEIILTWLAIHT 96
>gnl|CDD|220693 pfam10325, 7TM_GPCR_Srz, Serpentine type 7TM GPCR chemoreceptor
Srz. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srz is a solo families
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srz appear to be under
strong adaptive evolutionary pressure.
Length = 266
Score = 48.4 bits (116), Expect = 4e-06
Identities = 17/94 (18%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------- 127
Y + I +II +I+I II + ++++ +I+ I+ II + ++I ++
Sbjct: 51 YFLFIFLIIFLILIFFFTKNSIIGFLFLLLLFLILYILYIITQVFHLLIFLLAIQRFLIY 110
Query: 128 --------IIIIIIIIIIIIIIIIIIIIIIDLIF 153
++I + I + ++ ++ D+I
Sbjct: 111 FFPSTEKYVLISQKSLHKYIWYLYLVFVLKDIIL 144
Score = 48.0 bits (115), Expect = 6e-06
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 25/109 (22%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------------- 105
V F + S I+ + +I I + I++ + ++ I I+I
Sbjct: 149 VLSFSKDLSTEILELFYLITFIFLNILLFLSALLYIPIMISIRKLSHLASAQLNKPQKYI 208
Query: 106 ---IIIIII--IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
I ++I I I III I +I + ++ +III I+ II +II
Sbjct: 209 FWQTITVLIFKSIYIPIIIFIFLIGFLSEFVLTLIIISILDIITTPLII 257
Score = 45.7 bits (109), Expect = 3e-05
Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 27/117 (23%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----I 123
+ K Y+ ++ ++ II+ ++ ++ + I+ + +I I + I++ + I
Sbjct: 125 SLHKYIWYLYLVFVLKDIILFLLYVLSFSKDLSTEILELFYLITFIFLNILLFLSALLYI 184
Query: 124 IIIIII----------------------IIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
I+I I I ++I I I III I +I + +F
Sbjct: 185 PIMISIRKLSHLASAQLNKPQKYIFWQTITVLIFKSIYIPIIIFIFLIGFLSEFVLT 241
Score = 44.5 bits (106), Expect = 8e-05
Identities = 13/72 (18%), Positives = 37/72 (51%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
KY++I + I + ++ ++ II+ ++ ++ + I+ + +I I + I++
Sbjct: 117 KYVLISQKSLHKYIWYLYLVFVLKDIILFLLYVLSFSKDLSTEILELFYLITFIFLNILL 176
Query: 135 IIIIIIIIIIII 146
+ ++ I I+I
Sbjct: 177 FLSALLYIPIMI 188
Score = 44.5 bits (106), Expect = 9e-05
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 28/114 (24%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----III 128
KYI + ++ ++ II+ ++ ++ + I+ + +I I + I++ + I I
Sbjct: 127 HKYIWYLYLVFVLKDIILFLLYVLSFSKDLSTEILELFYLITFIFLNILLFLSALLYIPI 186
Query: 129 II-----------------------IIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+I I ++I I I III I + F F+
Sbjct: 187 MISIRKLSHLASAQLNKPQKYIFWQTITVLIFKSIYIPIIIFIFLIGFLSEFVL 240
Score = 43.3 bits (103), Expect = 2e-04
Identities = 18/96 (18%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 76 YIIIIIIIIIIIIIIIIIIII-----------IIIIIII-----IIIIIIIIIIIIIIII 119
+++++I+++II ++I + ++ I ++ I + I +II +
Sbjct: 2 FLLLLIVLLIIYLLIFPFYVYVFKLNRERDKKTLLFPITNHFYKMVKITYFLFIFLIIFL 61
Query: 120 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
I+I II + ++++ +I+ I+ II +F
Sbjct: 62 ILIFFFTKNSIIGFLFLLLLFLILYILYIITQVFHL 97
Score = 43.0 bits (102), Expect = 3e-04
Identities = 18/98 (18%), Positives = 45/98 (45%), Gaps = 22/98 (22%)
Query: 77 IIIIIIIIIIIIIIII-----------------IIIIIII-----IIIIIIIIIIIIIII 114
++++I+++II ++I ++ I ++ I + I +II
Sbjct: 1 SFLLLLIVLLIIYLLIFPFYVYVFKLNRERDKKTLLFPITNHFYKMVKITYFLFIFLIIF 60
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+I+I II + ++++ +I+ I+ II + L+
Sbjct: 61 LILIFFFTKNSIIGFLFLLLLFLILYILYIITQVFHLL 98
Score = 42.6 bits (101), Expect = 4e-04
Identities = 12/71 (16%), Positives = 35/71 (49%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+V K + I + ++ ++ II+ ++ ++ + I+ + +I I + I++
Sbjct: 118 YVLISQKSLHKYIWYLYLVFVLKDIILFLLYVLSFSKDLSTEILELFYLITFIFLNILLF 177
Query: 129 IIIIIIIIIII 139
+ ++ I I+I
Sbjct: 178 LSALLYIPIMI 188
Score = 41.4 bits (98), Expect = 8e-04
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++ I + I +II +I+I II + ++++ +I+ I+ II + ++I ++ I
Sbjct: 46 MVKITYFLFIFLIIFLILIFFFTKNSIIGFLFLLLLFLILYILYIITQVFHLLIFLLAI 104
Score = 41.4 bits (98), Expect = 8e-04
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
++ I + I +II +I+I II + ++++ +I+ I+ II + ++I ++ I
Sbjct: 46 MVKITYFLFIFLIIFLILIFFFTKNSIIGFLFLLLLFLILYILYIITQVFHLLIFLLAI 104
Score = 41.4 bits (98), Expect = 8e-04
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++ I + I +II +I+I II + ++++ +I+ I+ II + ++I ++ I
Sbjct: 46 MVKITYFLFIFLIIFLILIFFFTKNSIIGFLFLLLLFLILYILYIITQVFHLLIFLLAI 104
Score = 41.4 bits (98), Expect = 8e-04
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
++ I + I +II +I+I II + ++++ +I+ I+ II + ++I ++ I
Sbjct: 46 MVKITYFLFIFLIIFLILIFFFTKNSIIGFLFLLLLFLILYILYIITQVFHLLIFLLAI 104
Score = 41.4 bits (98), Expect = 8e-04
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
++ I + I +II +I+I II + ++++ +I+ I+ II + ++I ++ I
Sbjct: 46 MVKITYFLFIFLIIFLILIFFFTKNSIIGFLFLLLLFLILYILYIITQVFHLLIFLLAI 104
Score = 41.4 bits (98), Expect = 8e-04
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++ I + I +II +I+I II + ++++ +I+ I+ II + ++I ++ I
Sbjct: 46 MVKITYFLFIFLIIFLILIFFFTKNSIIGFLFLLLLFLILYILYIITQVFHLLIFLLAI 104
Score = 41.0 bits (97), Expect = 0.001
Identities = 15/111 (13%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------------I 107
++ F ++ I + ++++ +I+ I+ II + ++I ++ +
Sbjct: 60 FLILIFFFTKNSIIGFLFLLLLFLILYILYIITQVFHLLIFLLAIQRFLIYFFPSTEKYV 119
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+I + I + ++ ++ II+ ++ ++ + I++L + TF+
Sbjct: 120 LISQKSLHKYIWYLYLVFVLKDIILFLLYVLSFSKDLSTEILELFYLITFI 170
>gnl|CDD|222119 pfam13425, O-antigen_lig, O-antigen ligase like membrane protein.
Length = 136
Score = 46.2 bits (110), Expect = 6e-06
Identities = 11/89 (12%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 90 IIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+++++ +++++I +++ ++ ++I +++++++ ++I++ I+ +I ++++
Sbjct: 2 LLLLLALLLLLIALLLSGSRTALLALLIALLLLLLLKKRRKLLILLAILGVIALLVLSGR 61
Query: 146 IIIIDLIFDFTFMYLKEFRVEQCPLFLQH 174
I D L R+E L+
Sbjct: 62 FSRIIAGSDERDSSL-SGRLELWEEALEA 89
Score = 36.6 bits (85), Expect = 0.010
Identities = 7/49 (14%), Positives = 28/49 (57%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
R+ + ++I +++++++ ++I++ I+ +I ++++ II
Sbjct: 21 RTALLALLIALLLLLLLKKRRKLLILLAILGVIALLVLSGRFSRIIAGS 69
Score = 36.6 bits (85), Expect = 0.011
Identities = 10/96 (10%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 73 RSKYIIIIIIIIIIII-------IIIIIIIIIIIII--------IIIIIIIIIIIIIIII 117
R ++ +++++I ++ ++ ++I ++++++ I++ I+ +I ++++
Sbjct: 1 RLLLLLALLLLLIALLLSGSRTALLALLIALLLLLLLKKRRKLLILLAILGVIALLVLSG 60
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
II + + + + I+ +F
Sbjct: 61 RFSRIIAGSDERDSSLSGRLELWEEALEAILESPLF 96
Score = 30.8 bits (70), Expect = 1.1
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII 102
++KR K +I++ I+ +I ++++ II
Sbjct: 36 LLKKRRKLLILLAILGVIALLVLSGRFSRIIAGS 69
>gnl|CDD|233317 TIGR01218, Gpos_tandem_5TM, tandem five-transmembrane protein.
Members of this family of proteins, with average length
of 210, have no invariant residues but five predicted
transmembrane segments. Strangely, most members occur in
groups of consecutive paralogous genes. A striking
example is a set of eleven encoded consecutively,
head-to-tail, in Staphylococcus aureus strain COL.
Length = 208
Score = 46.8 bits (112), Expect = 8e-06
Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 23/103 (22%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIII-------------------IIIIIIIIIIIIIIIII 114
S +I II+ +I I+++ ++ I I I I I I+ +
Sbjct: 94 SIFIKIILFLISILLVYLLRIYINKKNKKKLYNRLPNNNKRYKIKIRPTSFKYRIFILFL 153
Query: 115 IIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIDLIF 153
I + + I + + I II++I II + ++I+++
Sbjct: 154 YIFFLGLSIFLFYLFINNGGENIILVINGIIFLFFFLLINMLP 196
Score = 42.2 bits (100), Expect = 4e-04
Identities = 18/94 (19%), Positives = 36/94 (38%)
Query: 54 KILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 113
+I + K + +Y I I I I+ + I + + I + + I
Sbjct: 113 RIYINKKNKKKLYNRLPNNNKRYKIKIRPTSFKYRIFILFLYIFFLGLSIFLFYLFINNG 172
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
II++I II + ++I ++ I + I
Sbjct: 173 GENIILVINGIIFLFFFLLINMLPISYKKYKVKI 206
Score = 37.2 bits (87), Expect = 0.017
Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 21/111 (18%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIII--IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII- 127
K+ K + I+ I +++ ++ + I I I II+ +I I+++ ++ I I
Sbjct: 59 TKKKKNSGLGILGQGISVLLYRLLRPLFDYFDISQSIFIKIILFLISILLVYLLRIYINK 118
Query: 128 ------------------IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I I I I+ + I + L ++++
Sbjct: 119 KNKKKLYNRLPNNNKRYKIKIRPTSFKYRIFILFLYIFFLGLSIFLFYLFI 169
>gnl|CDD|220342 pfam09685, Tic20, Tic20-like protein. Chloroplast function
requires the import of nuclear encoded proteins from the
cytoplasm across the chloroplast double membrane. This
is accomplished by two protein complexes, the Toc
complex located at the outer membrane and the Tic
complex located at the inner membrane. The Toc complex
recognises specific proteins by a cleavable N-terminal
sequence and is primarily responsible for translocation
through the outer membrane, while the Tic complex
translocates the protein through the inner membrane.
This entry represents Tic20, a core member of the Tic
complex. This protein is deeply embedded in the inner
envelope membrane and is thought to function as a
protein- conducting component of the Tic complex. This
family also includes many proteins of unknown function
from non-synthetic organisms.
Length = 104
Score = 44.5 bits (106), Expect = 1e-05
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
FVR K + I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 33 PFVRFHGKEALNFQISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
I ++I +I+ I+ I+ I +++I++ I+ ++ II I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTIIAAI 87
Score = 36.7 bits (86), Expect = 0.006
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I ++I +I+ I+ I+ I +++I++ I+ L+F
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVF 81
Score = 34.4 bits (80), Expect = 0.034
Identities = 9/38 (23%), Positives = 23/38 (60%)
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I ++I +I+ I+ I+ I +++I++ I+ ++ I
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFTII 84
Score = 32.1 bits (74), Expect = 0.22
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
I ++I +I+ I+ I+ I +++I+ I F
Sbjct: 47 ISLLIYTVILGILSFILGFIGFLLLILLWILSLVFT 82
>gnl|CDD|216774 pfam01901, DUF70, Protein of unknown function DUF70.
Archaebacterial proteins of unknown function. Members of
this family may be transmembrane proteins.
Length = 331
Score = 47.7 bits (114), Expect = 1e-05
Identities = 19/77 (24%), Positives = 37/77 (48%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
II+I++ + + + I +IIII++ I + + I+ I I
Sbjct: 2 LIIVIVLFLFLSLSSIPFSASLIIIILLGFFSIFFGSGYLKGSKLGKILKKIKYKKSEKI 61
Query: 136 IIIIIIIIIIIIIIDLI 152
+I++II I+ II+L+
Sbjct: 62 GLILLIIGILFFIINLL 78
Score = 42.7 bits (101), Expect = 5e-04
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIII 134
+II+I++ + + + I +IIII++ I + + I+ I I
Sbjct: 2 LIIVIVLFLFLSLSSIPFSASLIIIILLGFFSIFFGSGYLKGSKLGKILKKIKYKKSEKI 61
Query: 135 IIIIIIIIIIIIIIIDLI 152
+I++II I+ II LI
Sbjct: 62 GLILLIIGILFFIINLLI 79
Score = 39.6 bits (93), Expect = 0.004
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
S III++ I + + I+ I I +I++II I+ II ++I+
Sbjct: 22 SLIIIILLGFFSIFFGSGYLKGSKLGKILKKIKYKKSEKIGLILLIIGILFFIINLLIV 80
Score = 39.6 bits (93), Expect = 0.004
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S +IIII++ I + + I+ I I +I++II I+ II ++I
Sbjct: 20 SASLIIIILLGFFSIFFGSGYLKGSKLGKILKKIKYKKSEKIGLILLIIGILFFIINLLI 79
Query: 134 I 134
+
Sbjct: 80 V 80
Score = 39.6 bits (93), Expect = 0.004
Identities = 17/75 (22%), Positives = 35/75 (46%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+II+I++ + + + I +IIII++ I + + I+ I I
Sbjct: 2 LIIVIVLFLFLSLSSIPFSASLIIIILLGFFSIFFGSGYLKGSKLGKILKKIKYKKSEKI 61
Query: 140 IIIIIIIIIIDLIFD 154
+I++II I+ I +
Sbjct: 62 GLILLIIGILFFIIN 76
Score = 39.6 bits (93), Expect = 0.004
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ + IIII++ I + + I+ I I +I++II I+ II
Sbjct: 16 SIPFSASLIIIILLGFFSIFFGSGYLKGSKLGKILKKIKYKKSEKIGLILLIIGILFFII 75
Query: 129 IIIII 133
++I+
Sbjct: 76 NLLIV 80
Score = 38.8 bits (91), Expect = 0.006
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+IIII++ I + + I+ I I +I++II I+ II ++I+
Sbjct: 22 SLIIIILLGFFSIFFGSGYLKGSKLGKILKKIKYKKSEKIGLILLIIGILFFIINLLIV 80
Score = 36.1 bits (84), Expect = 0.049
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 72 KRSKYIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
++ KY I II I+I ++ ++++++ +I + I I++ I + II++
Sbjct: 118 QKKKYFIPSIIFSILIALLGYRTPVLVLLLAYLIYLYYSNKIKNKEILLSGIGLFIILLG 177
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I + I+ + + ++ FT L
Sbjct: 178 ISYLRILSSSGQTWTLNPLELLLYRAYFTLSVL 210
Score = 35.7 bits (83), Expect = 0.066
Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 40/126 (31%)
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIII-------------------------IIIII 101
+ K+S+ I +I++II I+ II ++I+ ++
Sbjct: 51 KKIKYKKSEKIGLILLIIGILFFIINLLIVGGIPLFDPYLRMFLNPKLTALSYLLLLGSA 110
Query: 102 IIII-------IIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I++ I II I+I ++++++ +I + I I++ I
Sbjct: 111 ILLAAKLQKKKYFIPSIIFSILIALLGYRTPVLVLLLAYLIYLYYSNKIKNKEILLSGIG 170
Query: 147 IIIDLI 152
+ I L+
Sbjct: 171 LFIILL 176
Score = 35.7 bits (83), Expect = 0.076
Identities = 17/100 (17%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 76 YIIIIIIIIIII-----IIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIII 124
Y++++ I++ I II I+I + ++++++ +I + I
Sbjct: 103 YLLLLGSAILLAAKLQKKKYFIPSIIFSILIALLGYRTPVLVLLLAYLIYLYYSNKIKNK 162
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
I++ I + II++ I + I+ + + L +R
Sbjct: 163 EILLSGIGLFIILLGISYLRILSSSGQTWTLNPLELLLYR 202
Score = 33.8 bits (78), Expect = 0.25
Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 40/133 (30%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIII-------------------------III 102
+ + K I +I++II I+ II ++I+ ++
Sbjct: 49 ILKKIKYKKSEKIGLILLIIGILFFIINLLIVGGIPLFDPYLRMFLNPKLTALSYLLLLG 108
Query: 103 IIIIII-------IIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIII 147
I++ I II I+I ++++++ +I + I I++
Sbjct: 109 SAILLAAKLQKKKYFIPSIIFSILIALLGYRTPVLVLLLAYLIYLYYSNKIKNKEILLSG 168
Query: 148 IIDLIFDFTFMYL 160
I I YL
Sbjct: 169 IGLFIILLGISYL 181
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 397
Score = 48.0 bits (115), Expect = 1e-05
Identities = 8/100 (8%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
E +++ +I+ ++ I I+++ I+ + + I+ +++ I+ + +++
Sbjct: 141 ELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLL 200
Query: 128 IIIIIII--II----------IIIIIIIIIIIIIDLIFDF 155
++ ++ + + I+ ++++++ + +
Sbjct: 201 LLGRYLLPPLFRRVAKTESSELFILFVLLLVLGAAYLAEL 240
Score = 43.0 bits (102), Expect = 4e-04
Identities = 7/70 (10%), Positives = 32/70 (45%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+I+ ++ I I+++ I+ + + I+ +++ I+ + +++++ + F
Sbjct: 152 LILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLF 211
Query: 158 MYLKEFRVEQ 167
+ + +
Sbjct: 212 RRVAKTESSE 221
Score = 37.6 bits (88), Expect = 0.022
Identities = 11/96 (11%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+++I++++ + I+ I+ + ++ + + I +++ ++ I + I
Sbjct: 298 NLLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALGSAI 357
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVE 166
++ ++I+ +I I+ L+ L + +
Sbjct: 358 SEALLTAVVILSMITTPILPLLTPILLKRLLKKSED 393
Score = 30.7 bits (70), Expect = 3.1
Identities = 8/74 (10%), Positives = 30/74 (40%)
Query: 61 ATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
K + + + + + I +++ ++ I + I ++ ++I+ +
Sbjct: 311 LGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALGSAISEALLTAVVILSM 370
Query: 121 IIIIIIIIIIIIII 134
I I+ ++ I++
Sbjct: 371 ITTPILPLLTPILL 384
>gnl|CDD|220496 pfam09972, DUF2207, Predicted membrane protein (DUF2207). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 503
Score = 48.1 bits (115), Expect = 1e-05
Identities = 11/64 (17%), Positives = 34/64 (53%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
R + + ++ + I+ +II+I+ I+I +++ ++++ I+++I +I I+
Sbjct: 381 DRKGLFDNYRYLKMGSLLGLSILTLIILILSFILISLVLAALVLLAIVLVIGSVIAAILP 440
Query: 132 IIII 135
+
Sbjct: 441 RKLF 444
Score = 48.1 bits (115), Expect = 1e-05
Identities = 11/66 (16%), Positives = 35/66 (53%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
K + + + ++ + I+ +II+I+ I+I +++ ++++ I+++I +I I
Sbjct: 379 EADRKGLFDNYRYLKMGSLLGLSILTLIILILSFILISLVLAALVLLAIVLVIGSVIAAI 438
Query: 131 IIIIII 136
+ +
Sbjct: 439 LPRKLF 444
Score = 47.4 bits (113), Expect = 2e-05
Identities = 12/75 (16%), Positives = 36/75 (48%)
Query: 43 SQLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII 102
+ + ++K L + + + S +II+I+ I+I +++ ++++ I++
Sbjct: 370 KKWQKSVKKEADRKGLFDNYRYLKMGSLLGLSILTLIILILSFILISLVLAALVLLAIVL 429
Query: 103 IIIIIIIIIIIIIII 117
+I +I I+ +
Sbjct: 430 VIGSVIAAILPRKLF 444
Score = 45.8 bits (109), Expect = 6e-05
Identities = 10/61 (16%), Positives = 32/61 (52%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ ++ + I+ +II+I+ I+I +++ ++++ I+++I +I I+ +
Sbjct: 384 GLFDNYRYLKMGSLLGLSILTLIILILSFILISLVLAALVLLAIVLVIGSVIAAILPRKL 443
Query: 128 I 128
Sbjct: 444 F 444
Score = 44.7 bits (106), Expect = 1e-04
Identities = 12/64 (18%), Positives = 36/64 (56%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ + + ++ + I+ +II+I+ I+I +++ ++++ I+++I +I I+ L
Sbjct: 385 LFDNYRYLKMGSLLGLSILTLIILILSFILISLVLAALVLLAIVLVIGSVIAAILPRKLF 444
Query: 153 FDFT 156
+T
Sbjct: 445 GRWT 448
Score = 44.3 bits (105), Expect = 2e-04
Identities = 10/61 (16%), Positives = 32/61 (52%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+ + + ++ + I+ +II+I+ I+I +++ ++++ I+++I +I I
Sbjct: 385 LFDNYRYLKMGSLLGLSILTLIILILSFILISLVLAALVLLAIVLVIGSVIAAILPRKLF 444
Query: 159 Y 159
Sbjct: 445 G 445
Score = 44.3 bits (105), Expect = 2e-04
Identities = 12/71 (16%), Positives = 39/71 (54%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ V+K + + + + ++ + I+ +II+I+ I+I +++ ++++ I+++I
Sbjct: 374 KSVKKEADRKGLFDNYRYLKMGSLLGLSILTLIILILSFILISLVLAALVLLAIVLVIGS 433
Query: 128 IIIIIIIIIII 138
+I I+ +
Sbjct: 434 VIAAILPRKLF 444
>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is
a conserved membrane protein. The yfhO gene is
transcribed in Difco sporulation medium and the
transcription is affected by the YvrGHb two-component
system. Some members of this family have been annotated
as glycosyl transferases of the PMT family.
Length = 835
Score = 48.4 bits (116), Expect = 1e-05
Identities = 9/95 (9%), Positives = 53/95 (55%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+ E + + + I+I I++++++ I++ ++ + + +++ ++ +++ ++
Sbjct: 352 LAAEALLHLKQLKKLKILISILLLVLLFILVFLLNLSKHYSFLTQTNLLLTLLFLLLYLL 411
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
++++ + I ++II+++++++++L +
Sbjct: 412 LLLLFLKKQIRKKLVIILLLLVVVLELGLNAYLSL 446
Score = 34.1 bits (79), Expect = 0.32
Identities = 9/88 (10%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ +I+++ ++ + + + I+I I++++++ I++ ++ + + +++ +
Sbjct: 344 LFSFLILLLAAEALLHLKQLKKLKILISILLLVLLFILVFLLNLSKHYSFLTQTNLLLTL 403
Query: 145 IIIIIDLIFDFTFMYLKEFRVEQCPLFL 172
+ +++ L+ K+ R + + L
Sbjct: 404 LFLLLYLLL-LLLFLKKQIRKKLVIILL 430
Score = 33.4 bits (77), Expect = 0.47
Identities = 7/80 (8%), Positives = 41/80 (51%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ +I+++ ++ + + + I+I I++++++ I++ ++ + + +++ +
Sbjct: 344 LFSFLILLLAAEALLHLKQLKKLKILISILLLVLLFILVFLLNLSKHYSFLTQTNLLLTL 403
Query: 142 IIIIIIIIDLIFDFTFMYLK 161
+ +++ ++ L+ K
Sbjct: 404 LFLLLYLLLLLLFLKKQIRK 423
Score = 29.1 bits (66), Expect = 9.8
Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 71 RKRSKYIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+K YII + +++I +I I +++ + +I I + II ++
Sbjct: 166 KKPGLYIIALALLLISNFYFGYMICIFLVLYFLYRLIFKDIKSRWKQFLRFIISSLLSGG 225
Query: 125 IIIIIII 131
I ++++
Sbjct: 226 ISAVVLL 232
>gnl|CDD|218142 pfam04549, CD47, CD47 transmembrane region. This family represents
the transmembrane region of CD47 leukocyte antigen.
Length = 156
Score = 45.4 bits (108), Expect = 1e-05
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
I+I+I +II II++ I + I ++ I + I +I+++ + I
Sbjct: 1 ILIVIFLIIYIILLWGQIGTLTFKYNKVKKKIYLLYAIGLWITLIVLVGQYLFIPTEYSF 60
Query: 130 IIIIIIIIIIIIIIIIIIIIDLIF 153
I II + +I + I I+I + ++F
Sbjct: 61 INIIGLGLIQLSIFILIFLQYIVF 84
Score = 45.4 bits (108), Expect = 2e-05
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I+I +II II++ I + + I ++ I + I +I+++ + I I
Sbjct: 2 LIVIFLIIYIILLWGQIGTLTFKYNKVKKKIYLLYAIGLWITLIVLVGQYLFIPTEYSFI 61
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYLKEF 163
II + +I + I LIF ++ +
Sbjct: 62 NIIGLGLIQLSIFILIFLQYIVFKLKI 88
Score = 41.9 bits (99), Expect = 2e-04
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
K K I ++ I + I +I+++ + I I II + +I + I I+I + I+
Sbjct: 26 NKVKKKIYLLYAIGLWITLIVLVGQYLFIPTEYSFINIIGLGLIQLSIFILIFLQYIVFK 85
Query: 131 IIII----IIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
+ I +I III+ +I I+ + +
Sbjct: 86 LKIKLSYFLIAIIILQVIGYILSVVGLALSLSGCNP 121
Score = 41.1 bits (97), Expect = 4e-04
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
+L+ Q T V+K+ + I + I +I+++ + I I II + +I +
Sbjct: 13 LLWGQIGTLTFKYNKVKKKIYLLYAIGLWITLIVLVGQYLFIPTEYSFINIIGLGLIQLS 72
Query: 115 IIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIDLIF 153
I I+I + I+ + I +I III+ +I I+ ++ + L
Sbjct: 73 IFILIFLQYIVFKLKIKLSYFLIAIIILQVIGYILSVVGLALSL 116
Score = 37.3 bits (87), Expect = 0.009
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 49 LEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIII------IIIIIIIIIIII 102
KV K +YL A I +I+++ + I I II + +I +
Sbjct: 25 YNKVKKKIYLLYAIGL------------WITLIVLVGQYLFIPTEYSFINIIGLGLIQLS 72
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
I I+I + I+ + I + +I III+ +I I+ ++ + + + + ++ + +Y
Sbjct: 73 IFILIFLQYIVFKLKIKLSYFLIAIIILQVIGYILSVVGLALSLSGCNPVYGYLLIY 129
>gnl|CDD|224596 COG1682, TagG, ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 263
Score = 46.8 bits (112), Expect = 2e-05
Identities = 14/88 (15%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 57 YLQTATKCMVCEFVRKRS--KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
+ A V + K I +I+ + + + +I +III+I +II+ +
Sbjct: 81 FFSEAISEGAGSVVANAALIKKINFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP 140
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++++ ++++I+ + + +I+ +
Sbjct: 141 SWHWLLLLPALLLLILFSVGLGLILASL 168
Score = 43.7 bits (104), Expect = 1e-04
Identities = 12/77 (15%), Positives = 38/77 (49%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I +I+ + + + +I +III+I +II+ + ++++ ++++I+ + +
Sbjct: 103 INFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEPSWHWLLLLPALLLLILFSVGLG 162
Query: 143 IIIIIIIDLIFDFTFMY 159
+I+ + D +
Sbjct: 163 LILASLGVRFRDLGQIL 179
Score = 43.0 bits (102), Expect = 3e-04
Identities = 11/66 (16%), Positives = 36/66 (54%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I +I+ + + + +I +III+I +II+ + ++++ ++++I+ + +
Sbjct: 103 INFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEPSWHWLLLLPALLLLILFSVGLG 162
Query: 138 IIIIII 143
+I+ +
Sbjct: 163 LILASL 168
Score = 43.0 bits (102), Expect = 3e-04
Identities = 11/66 (16%), Positives = 36/66 (54%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I +I+ + + + +I +III+I +II+ + ++++ ++++I+ + +
Sbjct: 103 INFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEPSWHWLLLLPALLLLILFSVGLG 162
Query: 140 IIIIII 145
+I+ +
Sbjct: 163 LILASL 168
Score = 43.0 bits (102), Expect = 3e-04
Identities = 11/66 (16%), Positives = 36/66 (54%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I +I+ + + + +I +III+I +II+ + ++++ ++++I+ + +
Sbjct: 103 INFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEPSWHWLLLLPALLLLILFSVGLG 162
Query: 141 IIIIII 146
+I+ +
Sbjct: 163 LILASL 168
Score = 43.0 bits (102), Expect = 3e-04
Identities = 11/66 (16%), Positives = 36/66 (54%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I +I+ + + + +I +III+I +II+ + ++++ ++++I+ + +
Sbjct: 103 INFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEPSWHWLLLLPALLLLILFSVGLG 162
Query: 142 IIIIII 147
+I+ +
Sbjct: 163 LILASL 168
Score = 30.2 bits (69), Expect = 3.1
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I +I+ + + + +I +III+I +II+ + + L+ + L
Sbjct: 103 INFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEPSWHWLLLLPALLLLIL 156
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 47.3 bits (113), Expect = 2e-05
Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIII 128
YI+ + + ++ ++ + I I I+II +I I I I+
Sbjct: 88 YILGLASSSSVAAQYLLSAFFPDLVGNTWLTYGIAIAILIIFALINIRGIKESAKIQNIL 147
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
I+ +++ +I+II++ +++ + F+ F
Sbjct: 148 GIVKLLLPLILIILLGLVLALGGGFNLLPNSWTTF 182
Score = 47.3 bits (113), Expect = 2e-05
Identities = 14/88 (15%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------I 127
+ I+ + + ++ ++ + I I I+II +I I I
Sbjct: 84 NWLAYILGLASSSSVAAQYLLSAFFPDLVGNTWLTYGIAIAILIIFALINIRGIKESAKI 143
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
I+ I+ +++ +I+II++ ++ +
Sbjct: 144 QNILGIVKLLLPLILIILLGLVLALGGG 171
Score = 45.8 bits (109), Expect = 6e-05
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ ++ I I I+II +I I I I I+ I+ +++ +I+II++ +++ +
Sbjct: 114 NTWLTYGIAIAILIIFALINIRGIKESAKIQNILGIVKLLLPLILIILLGLVLAL 168
Score = 45.8 bits (109), Expect = 6e-05
Identities = 16/82 (19%), Positives = 39/82 (47%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
Y++ ++ + I I I+II +I I I I I+ I+ +++ +I+II+
Sbjct: 102 YLLSAFFPDLVGNTWLTYGIAIAILIIFALINIRGIKESAKIQNILGIVKLLLPLILIIL 161
Query: 136 IIIIIIIIIIIIIIDLIFDFTF 157
+ +++ + ++ + F
Sbjct: 162 LGLVLALGGGFNLLPNSWTTFF 183
Score = 45.4 bits (108), Expect = 7e-05
Identities = 13/108 (12%), Positives = 47/108 (43%), Gaps = 16/108 (14%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIII 123
+F K +K+ + +I+ I+ +I++++ ++ ++ + +++ +++II ++
Sbjct: 310 KFFAKVNKFGSPVRALILTAILSLILLLLFLLSGAAYNALLSLSAVGYLLVYLLLIIGLL 369
Query: 124 II------------IIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
I+ + I+ I+ I+ +++ + Y
Sbjct: 370 ILRKKRPDLPRIKGRWPVAILAILFILFLLVALFFPPGGPSTGSNLNY 417
Score = 42.3 bits (100), Expect = 7e-04
Identities = 14/96 (14%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ + + I+ + + ++ ++ + I I I+II +I
Sbjct: 74 KPVAFIAAWFNWLAYILGLASSSSVAAQYLLSAFFPDLVGNTWLTYGIAIAILIIFALIN 133
Query: 131 II----------IIIIIIIIIIIIIIIIIDLIFDFT 156
I I+ I+ +++ +I+II++ L+
Sbjct: 134 IRGIKESAKIQNILGIVKLLLPLILIILLGLVLALG 169
Score = 42.3 bits (100), Expect = 8e-04
Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------- 130
+ I+ + + ++ ++ + I I I+II +I I
Sbjct: 82 WFNWLAYILGLASSSSVAAQYLLSAFFPDLVGNTWLTYGIAIAILIIFALINIRGIKESA 141
Query: 131 ----IIIIIIIIIIIIIIIIIIIDLIFDFTF 157
I+ I+ +++ +I+II++ + L F
Sbjct: 142 KIQNILGIVKLLLPLILIILLGLVLALGGGF 172
Score = 38.1 bits (89), Expect = 0.015
Identities = 11/140 (7%), Positives = 49/140 (35%), Gaps = 48/140 (34%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIII----------------------- 100
+ E ++ + I ++I+ ++ +++ I+ + ++
Sbjct: 209 NVSEEVKKRDVPKALFIGLLIVGVLYLLVNILFLGVVPDDEIAKLSNLPSVAALLFEAVG 268
Query: 101 --IIIIIIIIIIIIIIIIIIIIIIIIII-----------------------IIIIIIIII 135
II++I++ + ++ + I+ + +I+
Sbjct: 269 GPWGAIIVVILLALSLLGAVNTAIVASSRVLEALARDGVLPKFFAKVNKFGSPVRALILT 328
Query: 136 IIIIIIIIIIIIIIDLIFDF 155
I+ +I++++ ++ ++
Sbjct: 329 AILSLILLLLFLLSGAAYNA 348
Score = 31.9 bits (73), Expect = 1.3
Identities = 12/115 (10%), Positives = 50/115 (43%), Gaps = 31/115 (26%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIII 121
+++ +K I+ I+ +++ +I+II++ +++ + ++ + + ++
Sbjct: 136 GIKESAKIQNILGIVKLLLPLILIILLGLVLALGGGFNLLPNSWTTFFPSGWPGVFLGLL 195
Query: 122 III------------------------IIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I++ + I ++I+ ++ +++ I+ + ++ D I
Sbjct: 196 IVLWSFGGFESAANVSEEVKKRDVPKALFIGLLIVGVLYLLVNILFLGVVPDDEI 250
Score = 30.4 bits (69), Expect = 4.1
Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIII 113
R K + I+ I+ I+ +++ + + II++++
Sbjct: 374 KRPDLPRIKGRWPVAILAILFILFLLVALFFPPGGPSTGSNLNYAIILVVVF 425
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 47.2 bits (113), Expect = 2e-05
Identities = 12/103 (11%), Positives = 37/103 (35%), Gaps = 14/103 (13%)
Query: 68 EFVRKR----SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
E R + ++ + I + + I + + I + I+I+ +I +I
Sbjct: 107 ERYGGRFGAPLRQFYAWYFALLSNVGIGAWLYLAAIKVAAVFGPWDITLTILILGLITLI 166
Query: 124 IIII-----IIII-----IIIIIIIIIIIIIIIIIIDLIFDFT 156
+I +++ +I++ I + ++ + +
Sbjct: 167 YSVIGGLWAVVVTDVVQFVILMAASIAVAVLALNAVGGPGGLW 209
Score = 33.3 bits (77), Expect = 0.41
Identities = 9/100 (9%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------------IIII 120
+ ++ ++ I++ + I I++ + + +++ +I
Sbjct: 374 RLATVLFGLLSIVVALASDSIGGAFDIVLALGAGLGGPLLLPWLWWRFNAWGEIWAMIAS 433
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
II+ +++ +++ I + + ++ + +++ L+ L
Sbjct: 434 IIVGLLVSVVLKIGLGELFLLQFPLPVLLSLVVWLAVTLL 473
Score = 30.2 bits (69), Expect = 4.3
Identities = 12/113 (10%), Positives = 45/113 (39%), Gaps = 23/113 (20%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------------II 117
+ ++ ++ I++ + I I++ + + +++ I
Sbjct: 373 GRLATVLFGLLSIVVALASDSIGGAFDIVLALGAGLGGPLLLPWLWWRFNAWGEIWAMIA 432
Query: 118 IIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIDLIFDFTFMY-LKEF 163
II+ +++ +++ I + + +++ +++ + + L+ T LK F
Sbjct: 433 SIIVGLLVSVVLKIGLGELFLLQFPLPVLLSLVVWLAVTLLTPPTDEETLKAF 485
>gnl|CDD|226227 COG3704, VirB6, Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion].
Length = 406
Score = 47.1 bits (112), Expect = 2e-05
Identities = 17/63 (26%), Positives = 37/63 (58%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I ++I ++ + I++ I+ +I+I +I II+ I+ I I++++ I + I ++F
Sbjct: 179 ISLLIPLLGVGNGGILVAILAFWVIVISLIGYAIILYIMAFIAIVVLLGIGPLFIPLMLF 238
Query: 154 DFT 156
D T
Sbjct: 239 DRT 241
Score = 45.9 bits (109), Expect = 5e-05
Identities = 18/116 (15%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+I ++I ++ + I++ I+ +I+I +I II+ I+ I I++++ I
Sbjct: 170 ILATSARPFISLLIPLLGVGNGGILVAILAFWVIVISLIGYAIILYIMAFIAIVVLLGIG 229
Query: 128 IIIIIIII------------------IIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
+ I +++ + ++++ I ++ I D + + V
Sbjct: 230 PLFIPLMLFDRTRRLFDNWLGQLISYALQPMLLVAFIALLITILDTYLTAVLGYSV 285
>gnl|CDD|219520 pfam07694, 5TM-5TMR_LYT, 5TMR of 5TMR-LYT. This entry represents
the transmembrane region of the 5TM-LYT (5TM Receptors
of the LytS-YhcK type).
Length = 169
Score = 44.9 bits (107), Expect = 3e-05
Identities = 11/82 (13%), Positives = 41/82 (50%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I I I+ ++ +I + I ++ ++I ++ I+ +++I+++ + + +
Sbjct: 84 IACGISTILAGLLAGLIHRRLKRRKKISWLVALLIGLLAEILQMLLILLLAKPFDLALEL 143
Query: 139 IIIIIIIIIIIDLIFDFTFMYL 160
+ I + +I+++ + F+ +
Sbjct: 144 VSTIALPMILVNSLGTALFLLI 165
Score = 44.1 bits (105), Expect = 4e-05
Identities = 12/84 (14%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------III 127
I I+ ++ +I + I ++ ++I ++ I+ +++I+++ ++
Sbjct: 86 CGISTILAGLLAGLIHRRLKRRKKISWLVALLIGLLAEILQMLLILLLAKPFDLALELVS 145
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDL 151
I + +I++ + + ++II D+
Sbjct: 146 TIALPMILVNSLGTALFLLIIRDV 169
Score = 39.5 bits (93), Expect = 0.001
Identities = 11/62 (17%), Positives = 36/62 (58%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
KR K I ++ ++I ++ I+ +++I+++ + + ++ I + +I++ + + ++
Sbjct: 105 KRRKKISWLVALLIGLLAEILQMLLILLLAKPFDLALELVSTIALPMILVNSLGTALFLL 164
Query: 132 II 133
II
Sbjct: 165 II 166
Score = 39.5 bits (93), Expect = 0.002
Identities = 9/64 (14%), Positives = 36/64 (56%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
R + + I ++ ++I ++ I+ +++I+++ + + ++ I + +I++ + +
Sbjct: 103 RLKRRKKISWLVALLIGLLAEILQMLLILLLAKPFDLALELVSTIALPMILVNSLGTALF 162
Query: 131 IIII 134
++II
Sbjct: 163 LLII 166
Score = 38.0 bits (89), Expect = 0.006
Identities = 9/68 (13%), Positives = 39/68 (57%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
++ +++R K ++ ++I ++ I+ +++I+++ + + ++ I + +I++ +
Sbjct: 99 LIHRRLKRRKKISWLVALLIGLLAEILQMLLILLLAKPFDLALELVSTIALPMILVNSLG 158
Query: 125 IIIIIIII 132
+ ++II
Sbjct: 159 TALFLLII 166
Score = 37.2 bits (87), Expect = 0.009
Identities = 10/68 (14%), Positives = 37/68 (54%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ +R K I ++ ++I ++ I+ +++I+++ + + ++ I + +I++ +
Sbjct: 99 LIHRRLKRRKKISWLVALLIGLLAEILQMLLILLLAKPFDLALELVSTIALPMILVNSLG 158
Query: 129 IIIIIIII 136
+ ++II
Sbjct: 159 TALFLLII 166
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 44.8 bits (106), Expect = 3e-05
Identities = 9/72 (12%), Positives = 41/72 (56%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
KY ++ ++ + + +I+++++ ++ +I I + +I+ + II++++ + ++ +
Sbjct: 85 KYFLLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLS 144
Query: 135 IIIIIIIIIIII 146
++ + +I+
Sbjct: 145 FLLFFHLYLILK 156
Score = 42.9 bits (101), Expect = 1e-04
Identities = 7/71 (9%), Positives = 41/71 (57%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
++ ++ + + +I+++++ ++ +I I + +I+ + II++++ + ++ + ++
Sbjct: 88 LLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLL 147
Query: 141 IIIIIIIIIDL 151
+ +I+ ++
Sbjct: 148 FFHLYLILKNI 158
Score = 42.1 bits (99), Expect = 2e-04
Identities = 10/69 (14%), Positives = 40/69 (57%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
++ ++ + + +I+++++ ++ +I I + +I+ + II++++ + ++ + L+
Sbjct: 88 LLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLL 147
Query: 153 FDFTFMYLK 161
F ++ LK
Sbjct: 148 FFHLYLILK 156
Score = 42.1 bits (99), Expect = 2e-04
Identities = 7/69 (10%), Positives = 39/69 (56%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++ ++ + + +I+++++ ++ +I I + +I+ + II++++ + ++ + ++
Sbjct: 88 LLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLL 147
Query: 139 IIIIIIIII 147
+ +I+
Sbjct: 148 FFHLYLILK 156
Score = 42.1 bits (99), Expect = 2e-04
Identities = 7/69 (10%), Positives = 39/69 (56%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
++ ++ + + +I+++++ ++ +I I + +I+ + II++++ + ++ + ++
Sbjct: 88 LLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLL 147
Query: 140 IIIIIIIII 148
+ +I+
Sbjct: 148 FFHLYLILK 156
Score = 41.7 bits (98), Expect = 3e-04
Identities = 8/68 (11%), Positives = 38/68 (55%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++ ++ + + +I+++++ ++ +I I + +I+ + II++++ + ++ + ++
Sbjct: 88 LLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLL 147
Query: 146 IIIIDLIF 153
+ LI
Sbjct: 148 FFHLYLIL 155
Score = 28.6 bits (64), Expect = 7.1
Identities = 6/59 (10%), Positives = 28/59 (47%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 113
++ L + + +R + +I+ + II++++ + ++ + ++ + +I+
Sbjct: 98 LILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFFHLYLILK 156
>gnl|CDD|218173 pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein.
Length = 223
Score = 45.6 bits (109), Expect = 3e-05
Identities = 7/52 (13%), Positives = 27/52 (51%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
I + ++ + ++++ + +++++ I + +++ + I I L+F T
Sbjct: 98 GIGAALAGLLAWLGVLLLFFVAAVVLLVAKIELALLLALGPIFIAFLLFPAT 149
Score = 43.7 bits (104), Expect = 1e-04
Identities = 8/96 (8%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---- 127
+ S I + ++ + ++++ + +++++ I + +++ + I I ++
Sbjct: 90 EASSLNGPGIGAALAGLLAWLGVLLLFFVAAVVLLVAKIELALLLALGPIFIAFLLFPAT 149
Query: 128 -------IIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+ ++ ++++++ +I+ I L +
Sbjct: 150 RDMFENWLGQVLSYALLLLLLALIVGIGSGLFDSYL 185
Score = 42.2 bits (100), Expect = 4e-04
Identities = 8/98 (8%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------- 123
S I + ++ + ++++ + +++++ I + +++ + I I
Sbjct: 93 SLNGPGIGAALAGLLAWLGVLLLFFVAAVVLLVAKIELALLLALGPIFIAFLLFPATRDM 152
Query: 124 -------IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
++ ++++++ +I+ I + + + D
Sbjct: 153 FENWLGQVLSYALLLLLLALIVGIGSGLFDSYLAALGD 190
Score = 39.8 bits (94), Expect = 0.002
Identities = 6/116 (5%), Positives = 44/116 (37%), Gaps = 42/116 (36%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------------------ 111
+ ++ + ++++ + +++++ I + +++ +
Sbjct: 101 AALAGLLAWLGVLLLFFVAAVVLLVAKIELALLLALGPIFIAFLLFPATRDMFENWLGQV 160
Query: 112 ---IIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIII 149
++++++ +I+ I + + I+++ ++++ ++I I
Sbjct: 161 LSYALLLLLLALIVGIGSGLFDSYLAALGDAADPTLGTALAILLLSLVLLFLVIQI 216
>gnl|CDD|217759 pfam03845, Spore_permease, Spore germination protein.
Length = 320
Score = 46.1 bits (110), Expect = 4e-05
Identities = 20/131 (15%), Positives = 51/131 (38%), Gaps = 22/131 (16%)
Query: 76 YIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIII--IIIIIIIIIIIIIII 129
Y + + ++ ++ ++ III+ ++++ I +I I ++ II I+
Sbjct: 87 YFLYLAGRVLRDFSEVLQTFLLPDTPTWIIILTLLLVSIYLISKGIEVLAREFCFIIPIL 146
Query: 130 IIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFH--- 186
+II++ I+I + I + + + + + PF F
Sbjct: 147 LIILLFILIFSLKQAHIKNLRPVLGNGISPV--LKGSKTTSL---------PFGGFEILL 195
Query: 187 --WHFMNQRRR 195
+ FM +++
Sbjct: 196 MLYPFMKDKKK 206
Score = 36.8 bits (86), Expect = 0.027
Identities = 15/124 (12%), Positives = 45/124 (36%), Gaps = 44/124 (35%)
Query: 76 YIIIIIIIIIIIIIIIIIIII--------------------------IIIIIIIIIIIII 109
+I +++ +I ++++++ + + + + +
Sbjct: 35 WIAVLLGGLIGLLLVLLYYKLLKKFPEKTLIEYMKKILGKWLGSLLSFLFALYFLYLAGR 94
Query: 110 IIIIIIIIII--------IIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIDL 151
++ ++ III+ ++++ I +I II I++II++ L
Sbjct: 95 VLRDFSEVLQTFLLPDTPTWIIILTLLLVSIYLISKGIEVLAREFCFIIPILLIILLFIL 154
Query: 152 IFDF 155
IF
Sbjct: 155 IFSL 158
Score = 35.7 bits (83), Expect = 0.069
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
++ F+ + III+ ++++ I +I I ++ II I++II++ I+I +
Sbjct: 102 VLQTFLLPDTPTWIIILTLLLVSIYLISKGIEVLAREFCFIIPILLIILLFILIFSLKQA 161
Query: 125 III 127
I
Sbjct: 162 HIK 164
Score = 35.3 bits (82), Expect = 0.089
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 35/121 (28%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIII--------------------IIII 104
M+ F++ + K ++ + I ++ + I+I I +
Sbjct: 196 MLYPFMKDKKKSKKAALLGVGISGLLYTLTTFIVIGVLGVDQTKTLTWPTLSLLRVIEVP 255
Query: 105 III----IIIIIIIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIII 149
I I + I++I I I + + I ++I+I II II I
Sbjct: 256 EFIERFEYFFISVWILVIFFTIAIYLYAASLGISRLFKKKNKSLLVILIGIIFIISSIPK 315
Query: 150 D 150
+
Sbjct: 316 N 316
Score = 34.5 bits (80), Expect = 0.16
Identities = 24/147 (16%), Positives = 55/147 (37%), Gaps = 48/147 (32%)
Query: 76 YIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------- 121
+III+ ++++ I +I ++ II I++II++ I+I + I
Sbjct: 114 WIIILTLLLVSIYLISKGIEVLAREFCFIIPILLIILLFILIFSLKQAHIKNLRPVLGNG 173
Query: 122 -----------------IIIIIII-----------------IIIIIIIIIIIIIIIIIII 147
I++++ + I ++ + I+I ++
Sbjct: 174 ISPVLKGSKTTSLPFGGFEILLMLYPFMKDKKKSKKAALLGVGISGLLYTLTTFIVIGVL 233
Query: 148 IIDLIFDFTFMYLKEFRVEQCPLFLQH 174
+D T+ L RV + P F++
Sbjct: 234 GVDQTKTLTWPTLSLLRVIEVPEFIER 260
Score = 30.3 bits (69), Expect = 3.8
Identities = 10/99 (10%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 79 IIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
I +++ +I ++++++ + +I + I+ + ++ + + + + +
Sbjct: 36 IAVLLGGLIGLLLVLLYYKLLKKFPEKTLIEYMKKILGKWLGSLLSFLFALYFLYLAGRV 95
Query: 131 IIIIIIIIIIIII----IIIIIIDLIFDFTFMYLKEFRV 165
+ ++ ++ III+ L+ ++ K V
Sbjct: 96 LRDFSEVLQTFLLPDTPTWIIILTLLLVSIYLISKGIEV 134
>gnl|CDD|235682 PRK06041, PRK06041, flagellar assembly protein J; Reviewed.
Length = 553
Score = 46.4 bits (111), Expect = 4e-05
Identities = 11/102 (10%), Positives = 40/102 (39%), Gaps = 18/102 (17%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------ 123
Y+ +++ + + + II I+ + + + + + I + + +I
Sbjct: 193 YVSLLLSVTFVAVFAIISPILTGTDPTTTLSLSLFLFLFIEVGGVYVIKKRVPKDPLWHT 252
Query: 124 ------IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
I ++II + + I++++++++ I +
Sbjct: 253 LEIKTKEQKKIRKLLIISVPLSAILVLLLLLLGFIIGPILID 294
Score = 44.1 bits (105), Expect = 2e-04
Identities = 13/100 (13%), Positives = 38/100 (38%), Gaps = 20/100 (20%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------------------II 117
+ + II I+ + + + + + I + + +I
Sbjct: 203 VAVFAIISPILTGTDPTTTLSLSLFLFLFIEVGGVYVIKKRVPKDPLWHTLEIKTKEQKK 262
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
I ++II + + I++++++++ II I+I +
Sbjct: 263 IRKLLIISVPLSAILVLLLLLLGFIIGPILIDKIPLPILI 302
Score = 40.7 bits (96), Expect = 0.002
Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 20/102 (19%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------------------III 116
+ II I+ + + + + + I + + +I I
Sbjct: 204 AVFAIISPILTGTDPTTTLSLSLFLFLFIEVGGVYVIKKRVPKDPLWHTLEIKTKEQKKI 263
Query: 117 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
++II + + I++++++++ II I+I I L
Sbjct: 264 RKLLIISVPLSAILVLLLLLLGFIIGPILIDKIPLPILIALP 305
Score = 36.8 bits (86), Expect = 0.043
Identities = 14/71 (19%), Positives = 35/71 (49%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
++K I ++II + + I++++++++ II I+I I + I+I + + + I
Sbjct: 254 EIKTKEQKKIRKLLIISVPLSAILVLLLLLLGFIIGPILIDKIPLPILIALPLTPLAIPG 313
Query: 131 IIIIIIIIIII 141
+ I
Sbjct: 314 YVARKEEKKIK 324
Score = 34.5 bits (80), Expect = 0.22
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I ++II + + I++++++++ II I+I I + I+I + + + I +
Sbjct: 261 KKIRKLLIISVPLSAILVLLLLLLGFIIGPILIDKIPLPILIALPLTPLAIPGYVARKEE 320
Query: 146 IIIIDLIFDFT 156
I +F
Sbjct: 321 KKIKRRDENFP 331
Score = 32.6 bits (75), Expect = 0.86
Identities = 13/64 (20%), Positives = 32/64 (50%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I ++II + + I++++++++ II I+I I + I+I + + + I +
Sbjct: 261 KKIRKLLIISVPLSAILVLLLLLLGFIIGPILIDKIPLPILIALPLTPLAIPGYVARKEE 320
Query: 145 IIII 148
I
Sbjct: 321 KKIK 324
Score = 32.2 bits (74), Expect = 1.1
Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIII 123
+ +Y + ++ + + + I + I I+ +I +I II +
Sbjct: 432 KKRYQSASSFVGLLYGLHAAMAFALFISLGIAKIMSDLISSLNIPAETVIGIIHVTPPSG 491
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIID------LIFDFTFM 158
I ++ +++II+II+ ++ + I I+D +F F M
Sbjct: 492 IPLLEYLLVIILIILSLLSALAIKIVDGGHKYNSLFHFVIM 532
Score = 31.0 bits (71), Expect = 2.2
Identities = 8/48 (16%), Positives = 28/48 (58%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
Y++ I++ ++ I++II+ I+ ++++++ I+++ + I
Sbjct: 17 KDYLLKILLPAVVFSILLIILAILYFSLLLLLLPILLLGSAVGYPYIK 64
Score = 29.1 bits (66), Expect = 9.8
Identities = 9/52 (17%), Positives = 30/52 (57%)
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQ 167
++ I++ ++ I++II+ I+ ++++++ I+ L + Y+K ++
Sbjct: 19 YLLKILLPAVVFSILLIILAILYFSLLLLLLPILLLGSAVGYPYIKLDSKKK 70
>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette
(ABC) transporters which generally bind type 2 PBPs.
These types of transporters consist of a PBP, two TMs,
and two cytoplasmic ABC ATPase subunits, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. For these transporters the ABCs and TMs are on
independent polypeptide chains. These systems transport
a diverse range of substrates. Most are specific for a
single substrate or a group of related substrates;
however some transporters are more promiscuous,
transporting structurally diverse substrates such as the
histidine/lysine and arginine transporter in
Enterobacteriaceae. In the latter case, this is achieved
through binding different PBPs with different
specificities to the TMs. For other promiscuous
transporters such as the multiple-sugar transporter Msm
of Streptococcus mutans, the PBP has a wide substrate
specificity. These transporters include the
maltose-maltodextrin, phosphate and sulfate
transporters, among others.
Length = 190
Score = 44.6 bits (106), Expect = 4e-05
Identities = 8/72 (11%), Positives = 37/72 (51%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
R + ++ II +++ + +++ ++++++ +++ I+ + + +I+ +++I
Sbjct: 28 RKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILALLLIAPF 87
Query: 129 IIIIIIIIIIII 140
+I + I
Sbjct: 88 ARLIRRAALESI 99
Score = 43.4 bits (103), Expect = 1e-04
Identities = 8/94 (8%), Positives = 45/94 (47%), Gaps = 17/94 (18%)
Query: 76 YIIIIIIIIIIIIIIII-----------------IIIIIIIIIIIIIIIIIIIIIIIIII 118
+ +I ++ +++ +++ II +++ + +++ ++++++ +++
Sbjct: 6 LLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG 65
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I+ + + +I+ +++I +I ++ I
Sbjct: 66 WGILPGLGLPALILALLLIAPFARLIRRAALESI 99
Score = 43.4 bits (103), Expect = 1e-04
Identities = 9/87 (10%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
Query: 77 IIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIIIIIIIIIIIII 122
+++ +I ++ +++ +++ II II +++ + +++ ++++++ +++
Sbjct: 5 LLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLL 64
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIIIII 149
I+ + + +I+ +++I +I
Sbjct: 65 GWGILPGLGLPALILALLLIAPFARLI 91
Score = 42.7 bits (101), Expect = 2e-04
Identities = 7/65 (10%), Positives = 35/65 (53%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++ II +++ + +++ ++++++ +++ I+ + + +I+ +++I +I
Sbjct: 36 LLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILALLLIAPFARLIRRAA 95
Query: 146 IIIID 150
+ I
Sbjct: 96 LESIP 100
Score = 42.7 bits (101), Expect = 2e-04
Identities = 11/73 (15%), Positives = 39/73 (53%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
RKR K ++ II +++ + +++ ++++++ +++ I+ + + +I+ +++I
Sbjct: 27 ARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILALLLIAP 86
Query: 130 IIIIIIIIIIIII 142
+I + I
Sbjct: 87 FARLIRRAALESI 99
Score = 40.3 bits (95), Expect = 0.001
Identities = 9/78 (11%), Positives = 33/78 (42%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S + I II+ + + I+ +++ + ++ + +++I I+
Sbjct: 113 SPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFP 172
Query: 134 IIIIIIIIIIIIIIIIDL 151
+ + + +I++++ L
Sbjct: 173 GDLGVAAAVALILLLLSL 190
Score = 39.6 bits (93), Expect = 0.002
Identities = 7/88 (7%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 81 IIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+++ +I ++ +++ +++ II+ ++ II +++ + +++ ++++++ +++
Sbjct: 5 LLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLL 64
Query: 132 IIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
I+ + + +I+ ++ + +
Sbjct: 65 GWGILPGLGLPALILALLLIAPFARLIR 92
Score = 39.2 bits (92), Expect = 0.003
Identities = 10/91 (10%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 82 IIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+++ +I ++ +++ +++ II+ ++ II +++ + +++ ++++++ +++
Sbjct: 5 LLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLL 64
Query: 133 IIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
I+ + + +I+ + LI F + +
Sbjct: 65 GWGILPGLGLPALILALLLIAPFARLIRRAA 95
Score = 36.1 bits (84), Expect = 0.033
Identities = 7/78 (8%), Positives = 30/78 (38%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
I II+ + + I+ +++ + ++ + +++I I+
Sbjct: 113 SPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFP 172
Query: 135 IIIIIIIIIIIIIIIDLI 152
+ + + +I+++ +
Sbjct: 173 GDLGVAAAVALILLLLSL 190
Score = 35.3 bits (82), Expect = 0.060
Identities = 8/74 (10%), Positives = 28/74 (37%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I II+ + + I+ +++ + ++ + +++I I+ +
Sbjct: 117 IFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLG 176
Query: 142 IIIIIIIIDLIFDF 155
+ + +I L+
Sbjct: 177 VAAAVALILLLLSL 190
Score = 30.7 bits (70), Expect = 1.6
Identities = 13/115 (11%), Positives = 34/115 (29%), Gaps = 23/115 (20%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII-----------------------III 105
F I+ + + +I+ +++I +I I
Sbjct: 60 FGVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFR 119
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
II+ + + I+ +++ + ++ + + LIF F
Sbjct: 120 RIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGD 174
>gnl|CDD|223833 COG0762, COG0762, Predicted integral membrane protein [Function
unknown].
Length = 96
Score = 42.2 bits (100), Expect = 5e-05
Identities = 11/96 (11%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIII 122
+ +++I+++ +++++I+I + I +++I ++ ++ + ++
Sbjct: 1 VFLMLILLLSLLVLLILIGVYIFLLLIRALLSWFPPAGETNPIGRLLAQLTEPLLRPFRR 60
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+I + I I+ ++I+ + +I L+ +
Sbjct: 61 LIPPLGGIDFSPIVALLILQFLQFFLIRLLGLILAL 96
Score = 35.7 bits (83), Expect = 0.010
Identities = 12/89 (13%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIIIII 124
+++ +++++I+I + I +++I ++ I ++ + ++ +I +
Sbjct: 6 ILLLSLLVLLILIGVYIFLLLIRALLSWFPPAGETNPIGRLLAQLTEPLLRPFRRLIPPL 65
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I I+ ++I+ + +I ++ LI
Sbjct: 66 GGIDFSPIVALLILQFLQFFLIRLLGLIL 94
>gnl|CDD|223469 COG0392, COG0392, Predicted integral membrane protein [Function
unknown].
Length = 322
Score = 45.5 bits (108), Expect = 6e-05
Identities = 7/69 (10%), Positives = 42/69 (60%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
R S+ + + ++ I+ +++ + ++++ ++I++ + + + + ++++ +++ I++
Sbjct: 114 RYRLYSRLGLSVALVSRILAFLLLTFGLGLLLLFLLILLFVPLKLALFLLLLTLLLRILL 173
Query: 129 IIIIIIIII 137
I++++ I
Sbjct: 174 ILLLLAAAI 182
Score = 44.3 bits (105), Expect = 1e-04
Identities = 7/66 (10%), Positives = 41/66 (62%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ + ++ I+ +++ + ++++ ++I++ + + + + ++++ +++ I++I++++
Sbjct: 122 GLSVALVSRILAFLLLTFGLGLLLLFLLILLFVPLKLALFLLLLTLLLRILLILLLLAAA 181
Query: 149 IDLIFD 154
I LI
Sbjct: 182 ILLILT 187
Score = 42.4 bits (100), Expect = 5e-04
Identities = 9/92 (9%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
Y + + + ++ I+ +++ + ++++ ++I++ + + + + ++++ +++ I++I+++
Sbjct: 118 YSRLGLSVALVSRILAFLLLTFGLGLLLLFLLILLFVPLKLALFLLLLTLLLRILLILLL 177
Query: 136 IIIII--IIIIIIIIIDLIFDFTFMYLKEFRV 165
+ I I+ + + + L R
Sbjct: 178 LAAAILLILTAFLRRREFKIGRLRLRLPNRRG 209
Score = 42.0 bits (99), Expect = 7e-04
Identities = 6/68 (8%), Positives = 42/68 (61%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
Y + + + + ++ I+ +++ + ++++ ++I++ + + + + ++++ +++ I++I
Sbjct: 115 YRLYSRLGLSVALVSRILAFLLLTFGLGLLLLFLLILLFVPLKLALFLLLLTLLLRILLI 174
Query: 136 IIIIIIII 143
++++ I
Sbjct: 175 LLLLAAAI 182
Score = 40.8 bits (96), Expect = 0.002
Identities = 7/85 (8%), Positives = 46/85 (54%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ + ++ I+ +++ + ++++ ++I++ + + + + ++++ +++ I++I++
Sbjct: 117 LYSRLGLSVALVSRILAFLLLTFGLGLLLLFLLILLFVPLKLALFLLLLTLLLRILLILL 176
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIF 153
++ I++I+ + I +
Sbjct: 177 LLAAAILLILTAFLRRREFKIGRLR 201
Score = 40.1 bits (94), Expect = 0.003
Identities = 6/80 (7%), Positives = 41/80 (51%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+ + ++ I+ +++ + ++++ ++I++ + + + + ++++ +++ I++I++ L
Sbjct: 122 GLSVALVSRILAFLLLTFGLGLLLLFLLILLFVPLKLALFLLLLTLLLRILLILLLLAAA 181
Query: 155 FTFMYLKEFRVEQCPLFLQH 174
+ R + +
Sbjct: 182 ILLILTAFLRRREFKIGRLR 201
Score = 39.7 bits (93), Expect = 0.003
Identities = 5/70 (7%), Positives = 34/70 (48%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
I I+ ++ +++ I+++ I++ + + + ++ + I + +++ ++ ++
Sbjct: 8 GIRSIIKKILGLLAVLLAIVLLFILLRLFGLDLKEVLAALKGINLTWLLLAFLLYLLSYA 67
Query: 132 IIIIIIIIII 141
++ + +
Sbjct: 68 LLTLYDRTAL 77
Score = 38.5 bits (90), Expect = 0.008
Identities = 9/101 (8%), Positives = 53/101 (52%), Gaps = 17/101 (16%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I+ +++ + ++++ ++I++ + + + + ++++ +++ I++I++++ I++I+
Sbjct: 130 RILAFLLLTFGLGLLLLFLLILLFVPLKLALFLLLLTLLLRILLILLLLAAAILLILTAF 189
Query: 137 II-----------------IIIIIIIIIIIDLIFDFTFMYL 160
+ ++ +++ +++ + D +YL
Sbjct: 190 LRRREFKIGRLRLRLPNRRGLLAQLLLSLVEWLADALILYL 230
Score = 33.1 bits (76), Expect = 0.50
Identities = 6/75 (8%), Positives = 38/75 (50%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ F+R+R I + + + ++ +++ ++ + +I+ ++++ + + + +++
Sbjct: 186 LTAFLRRREFKIGRLRLRLPNRRGLLAQLLLSLVEWLADALILYLLLLALGVNVSFFLVL 245
Query: 126 IIIIIIIIIIIIIII 140
+ ++ ++ +I
Sbjct: 246 LAFLVAVLAGVISPT 260
Score = 31.6 bits (72), Expect = 1.4
Identities = 6/85 (7%), Positives = 34/85 (40%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
K + + + I + I + + + + + + ++ I+ +++
Sbjct: 81 GVKLSLWKVALASFIAYFLNNITPAALGSGPAVRYRLYSRLGLSVALVSRILAFLLLTFG 140
Query: 133 IIIIIIIIIIIIIIIIIDLIFDFTF 157
+ ++++ ++I++ + + +F
Sbjct: 141 LGLLLLFLLILLFVPLKLALFLLLL 165
Score = 30.8 bits (70), Expect = 2.1
Identities = 5/84 (5%), Positives = 35/84 (41%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ + I + I + + + + + + ++ I+ +++ + +
Sbjct: 84 LSLWKVALASFIAYFLNNITPAALGSGPAVRYRLYSRLGLSVALVSRILAFLLLTFGLGL 143
Query: 130 IIIIIIIIIIIIIIIIIIIIDLIF 153
+++ ++I++ + + + + ++ L
Sbjct: 144 LLLFLLILLFVPLKLALFLLLLTL 167
Score = 30.4 bits (69), Expect = 3.5
Identities = 5/92 (5%), Positives = 36/92 (39%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ + + + + I + I + + + + + + ++ I+ +
Sbjct: 76 ALKSLGVKLSLWKVALASFIAYFLNNITPAALGSGPAVRYRLYSRLGLSVALVSRILAFL 135
Query: 126 IIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
++ + ++++ ++I++ + + + + T
Sbjct: 136 LLTFGLGLLLLFLLILLFVPLKLALFLLLLTL 167
>gnl|CDD|181074 PRK07668, PRK07668, hypothetical protein; Validated.
Length = 254
Score = 45.0 bits (107), Expect = 6e-05
Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
F K ++ +II ++I+I +++I+ I+ + ++ + I+ +I +I +II
Sbjct: 133 FKSKLTEKWFLIIYLVILIPMLLIVAIMFLNKWYGTPMLQFTQMQSYILAGLIFLITVII 192
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWH 188
I + ++ +II + I+ F F Y V P+ Q +
Sbjct: 193 NIYFLGWFGLLYLIIPLSIM------FLFKYFNSEDVV--PMIFQIIILYGSLYVLMFIE 244
Query: 189 FMNQRRRR 196
++ +R
Sbjct: 245 IKREKNKR 252
>gnl|CDD|220689 pfam10318, 7TM_GPCR_Srh, Serpentine type 7TM GPCR chemoreceptor
Srh. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srh is part of the Str
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 302
Score = 45.2 bits (108), Expect = 6e-05
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 24/106 (22%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------ 115
EF + +++ +I I+I+I+I+II I+ + + I + +
Sbjct: 169 EFFDEPPVFVLATDSTYFLISIVILILILIIQILFFVFLTIYYLFKSLKSSLSKKTRKLQ 228
Query: 116 ---IIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIII 149
+I +II + I +I+I+I +I + II + III
Sbjct: 229 KKFLIALIIQVSIPLIVILIPLIYFLYSIIFGYYNQALNNLAFIII 274
Score = 40.6 bits (96), Expect = 0.002
Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 50/139 (35%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIII--------------------------IIIIIII 104
K+++ + +I II ++ +I I + I + ++
Sbjct: 123 WKKTRVLYLIFNYIIALLFLIPIYLNIPDQEEAKLKVLKKLPCLPPEFFDEPPVFVLATD 182
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIII------------------------IIIIIIII 140
+I I+I+I+I+II I+ + + I +II + I
Sbjct: 183 STYFLISIVILILILIIQILFFVFLTIYYLFKSLKSSLSKKTRKLQKKFLIALIIQVSIP 242
Query: 141 IIIIIIIIIDLIFDFTFMY 159
+I+I+I +I ++ F Y
Sbjct: 243 LIVILIPLIYFLYSIIFGY 261
Score = 34.8 bits (81), Expect = 0.14
Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 48/135 (35%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIII--------------------IIIIIIIIIII 114
Y+ + I I + + ++ + II++ ++ +I II
Sbjct: 79 SYLGVPTPIQFYIGVTSLALVGVSIILLFENRYSILFTNKFRITWKKTRVLYLIFNYIIA 138
Query: 115 IIIIIIIIIII--------------------------IIIIIIIIIIIIIIIIIIIIIII 148
++ +I I + I + ++ +I I+I+I+I+I
Sbjct: 139 LLFLIPIYLNIPDQEEAKLKVLKKLPCLPPEFFDEPPVFVLATDSTYFLISIVILILILI 198
Query: 149 IDLIFDF--TFMYLK 161
I ++F T YL
Sbjct: 199 IQILFFVFLTIYYLF 213
>gnl|CDD|233180 TIGR00912, 2A0309, spore germination protein (amino acid permease).
This model describes spore germination protein GerKB
and paralogs from Bacillus subtilis, Clostridium tetani,
and other known or predicted endospore-forming members
of the Firmicutes (low-GC Gram positive bacteria).
Members show some similarity to amino acid permeases
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 359
Score = 45.4 bits (108), Expect = 6e-05
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIII---IIIIII 127
++ I+ I+ +I +I I I + II+III+III+ I I+ I +++
Sbjct: 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTPIIVIIILIIIVSIYIVRKGIEVLLR 139
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLI 152
I++II +I+ I+++I++ L
Sbjct: 140 TAEILLIIFLILFILVLILLAPKLG 164
Score = 41.5 bits (98), Expect = 0.001
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 32/132 (24%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII------------------IIII 106
++ + K+ K II III +++ I+ + I + I I
Sbjct: 200 LLFPLLSKKKKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIG 259
Query: 107 III----IIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIDLIF 153
I +I++ + II + I + I + + I+I+ ++++I I
Sbjct: 260 DFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYSILILPVLMVIFSISFFP 319
Query: 154 DFTFMYLKEFRV 165
D + L ++
Sbjct: 320 DSSN-QLFDYLE 330
Score = 41.1 bits (97), Expect = 0.002
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 45/138 (32%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIII-------------------------IIIIIIIIIIII 106
+ +I II+ +III ++ ++I ++ I+ I+ +
Sbjct: 33 GQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGRLLSILFILYFFL 92
Query: 107 IIIIIIIIIIIII---------IIIIIIIIIIIIIIII-----------IIIIIIIIIII 146
I +I I I II+III+III+ I I+ I++II +I+
Sbjct: 93 IAAYLIRIFADFIKTYLLPRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILF 152
Query: 147 IIIDLIFDFTFMYLKEFR 164
I++ ++ +K
Sbjct: 153 ILVLILLAPKLGNIKNLL 170
Score = 40.3 bits (95), Expect = 0.003
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIIIIIIIIII 118
R + I++ + II + I + I I+I+ ++++I I
Sbjct: 264 RFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYSILILPVLMVIFSISFFPDSSN 323
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ + + II I+ +++ +I+ II+ I
Sbjct: 324 QLFDYLEFLPIIAIVFFLLLPLILFIIVKI 353
Score = 39.6 bits (93), Expect = 0.004
Identities = 19/136 (13%), Positives = 53/136 (38%), Gaps = 26/136 (19%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------------IIII 109
+V + + + I++II +I+ I+++I++ + I + +
Sbjct: 128 YIVRKGIEVLLRTAEILLIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPV 187
Query: 110 IIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+ I I ++ II III +++ I+ + I + ++ + +
Sbjct: 188 VTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYW 247
Query: 158 MYLKEFRVEQCPLFLQ 173
L+ ++ F++
Sbjct: 248 PTLELIKLINIGDFIE 263
Score = 38.8 bits (91), Expect = 0.007
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
K S +I +I +I ++ + ++ I II+ +III ++ ++I I+
Sbjct: 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSK 60
Query: 131 ----------------IIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
I+ ++ I+ I+ +I LI F
Sbjct: 61 FPEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADF 104
Score = 38.4 bits (90), Expect = 0.009
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
K+ KY I+I+ ++++I I + + + II I+ +++ +I+ II+ I
Sbjct: 297 KKRKYSILILPVLMVIFSISFFPDSSNQLFDYLEFLPIIAIVFFLLLPLILFIIVKI 353
Score = 38.0 bits (89), Expect = 0.013
Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 46/132 (34%)
Query: 77 IIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIII------------- 112
II+III+III+ I I+ I++II +I+ I+++I++
Sbjct: 115 IIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLILLAPKLGNIKNLLPVLE 174
Query: 113 ---------IIIIIIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIIIDL 151
++ I I ++ II III +++ I+ + +
Sbjct: 175 NGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYILTTFVSI 234
Query: 152 IFDFTFMYLKEF 163
F K
Sbjct: 235 SV-FGGNVTKNL 245
Score = 38.0 bits (89), Expect = 0.014
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+ +KR I+I+ ++++I I + + + II I+ +++ +I+ II+
Sbjct: 293 SKLFKKRKYSILILPVLMVIFSISFFPDSSNQLFDYLEFLPIIAIVFFLLLPLILFIIVK 352
Query: 127 I 127
I
Sbjct: 353 I 353
Score = 38.0 bits (89), Expect = 0.015
Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------- 129
+I++ + II + I + I + + + I+I+ ++++I I
Sbjct: 267 LIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYSILILPVLMVIFSISFFPDSSNQLF 326
Query: 130 -------IIIIIIIIIIIIIIIIIIII 149
II I+ +++ +I+ II+ I
Sbjct: 327 DYLEFLPIIAIVFFLLLPLILFIIVKI 353
Score = 29.9 bits (68), Expect = 4.4
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+I +I +I ++ + ++ I II+ +III ++ ++I I+ + F
Sbjct: 7 QLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNF 66
Query: 158 M-YLKE 162
L +
Sbjct: 67 SEILSK 72
>gnl|CDD|218933 pfam06195, DUF996, Protein of unknown function (DUF996). Family of
uncharacterized bacterial and archaeal proteins.
Length = 139
Score = 42.6 bits (101), Expect = 8e-05
Identities = 17/112 (15%), Positives = 48/112 (42%), Gaps = 33/112 (29%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIII 125
+ Y+ I+ +I ++ I++++ + ++ + + + I+ +II+ ++
Sbjct: 28 NNYLYSFILALIGSVVFIVLLVALAGVLPVKGSLGAAANPYLFISPLGSILAGLIILWVL 87
Query: 126 III-------------------------IIIIIIIIIIIIIIIIIIIIIDLI 152
+II ++ I I++II++ +III++ I
Sbjct: 88 VIISAYFFKKAFEALAEATGVDLFKTAALLYWIGAILLIILVGLIIILVGWI 139
Score = 38.4 bits (90), Expect = 0.002
Identities = 10/64 (15%), Positives = 32/64 (50%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ I+ +I ++ I++++ + ++ + + + I + I+ +II+ +++II
Sbjct: 31 LYSFILALIGSVVFIVLLVALAGVLPVKGSLGAAANPYLFISPLGSILAGLIILWVLVII 90
Query: 150 DLIF 153
F
Sbjct: 91 SAYF 94
Score = 29.9 bits (68), Expect = 2.0
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 25/75 (33%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIII-------------------------IIIIIIIII 107
+ Y+ I + I+ +II+ +++II ++ I I+
Sbjct: 65 ANPYLFISPLGSILAGLIILWVLVIISAYFFKKAFEALAEATGVDLFKTAALLYWIGAIL 124
Query: 108 IIIIIIIIIIIIIII 122
+II++ +III++ I
Sbjct: 125 LIILVGLIIILVGWI 139
>gnl|CDD|225146 COG2237, COG2237, Predicted membrane protein [Function unknown].
Length = 364
Score = 45.0 bits (107), Expect = 8e-05
Identities = 17/79 (21%), Positives = 34/79 (43%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ I +II + I + I +II ++ I+ ++ I + + ++
Sbjct: 276 TMVGIFFDLIIGGKVRIEYLKISFFYLIIAFLVYGAFGYILELLTIYSLSPEQPSALFLV 335
Query: 134 IIIIIIIIIIIIIIIIDLI 152
+II +III+ II L
Sbjct: 336 AGVIISVIIILAIIYFSLK 354
Score = 42.3 bits (100), Expect = 7e-04
Identities = 15/76 (19%), Positives = 34/76 (44%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+II + I + I +II ++ I+ ++ I + + ++ +II +I
Sbjct: 284 LIIGGKVRIEYLKISFFYLIIAFLVYGAFGYILELLTIYSLSPEQPSALFLVAGVIISVI 343
Query: 138 IIIIIIIIIIIIDLIF 153
II+ II + + +
Sbjct: 344 IILAIIYFSLKSEDLV 359
Score = 41.6 bits (98), Expect = 0.001
Identities = 15/72 (20%), Positives = 31/72 (43%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+II + I + I +II ++ I+ ++ I + + ++ +I
Sbjct: 280 IFFDLIIGGKVRIEYLKISFFYLIIAFLVYGAFGYILELLTIYSLSPEQPSALFLVAGVI 339
Query: 133 IIIIIIIIIIII 144
I +III+ II
Sbjct: 340 ISVIIILAIIYF 351
Score = 39.6 bits (93), Expect = 0.004
Identities = 15/73 (20%), Positives = 32/73 (43%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I +II + I + I +II ++ I+ ++ I + + ++ +
Sbjct: 279 GIFFDLIIGGKVRIEYLKISFFYLIIAFLVYGAFGYILELLTIYSLSPEQPSALFLVAGV 338
Query: 141 IIIIIIIIIDLIF 153
II +III+ + F
Sbjct: 339 IISVIIILAIIYF 351
Score = 39.3 bits (92), Expect = 0.005
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ R +Y+ I +II ++ I+ ++ I + + ++ +II +III+ I
Sbjct: 289 KVRIEYLKISFFYLIIAFLVYGAFGYILELLTIYSLSPEQPSALFLVAGVIISVIIILAI 348
Query: 131 III 133
I
Sbjct: 349 IYF 351
Score = 39.3 bits (92), Expect = 0.006
Identities = 11/60 (18%), Positives = 25/60 (41%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ +II ++ I+ ++ I + + ++ +II +III+ II
Sbjct: 292 IEYLKISFFYLIIAFLVYGAFGYILELLTIYSLSPEQPSALFLVAGVIISVIIILAIIYF 351
Score = 38.9 bits (91), Expect = 0.007
Identities = 12/68 (17%), Positives = 29/68 (42%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ + + + I +II ++ I+ ++ I + + ++ +II +I
Sbjct: 284 LIIGGKVRIEYLKISFFYLIIAFLVYGAFGYILELLTIYSLSPEQPSALFLVAGVIISVI 343
Query: 128 IIIIIIII 135
II+ II
Sbjct: 344 IILAIIYF 351
Score = 38.1 bits (89), Expect = 0.015
Identities = 16/74 (21%), Positives = 32/74 (43%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I +II + I + I +II ++ I+ ++ I + + ++ +
Sbjct: 279 GIFFDLIIGGKVRIEYLKISFFYLIIAFLVYGAFGYILELLTIYSLSPEQPSALFLVAGV 338
Query: 143 IIIIIIIDLIFDFT 156
II +III I F+
Sbjct: 339 IISVIIILAIIYFS 352
Score = 30.0 bits (68), Expect = 4.3
Identities = 12/84 (14%), Positives = 28/84 (33%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ I I+ + I+ ++ I +II + I + I +II ++
Sbjct: 253 GALLAISTFILYSTWWFTLAILTTMVGIFFDLIIGGKVRIEYLKISFFYLIIAFLVYGAF 312
Query: 134 IIIIIIIIIIIIIIIIDLIFDFTF 157
I+ ++ I +
Sbjct: 313 GYILELLTIYSLSPEQPSALFLVA 336
Score = 30.0 bits (68), Expect = 4.5
Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIII 110
V E + + + + + I ++ +++I+ I I+
Sbjct: 208 VAELLERVREALYEGRVSFITYVVAGLLLILGGASSLTIALSSSAGALLAISTFILYSTW 267
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT-FMYL 160
+ I+ ++ I +II + I + I +II + F + L
Sbjct: 268 WFTLAILTTMVGIFFDLIIGGKVRIEYLKISFFYLIIAFLVYGAFGYILEL 318
Score = 30.0 bits (68), Expect = 4.7
Identities = 12/118 (10%), Positives = 43/118 (36%), Gaps = 25/118 (21%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------- 119
+++K ++ +++++ I+ + I+ +I I++I+ + ++
Sbjct: 147 RYLKKTDPEYSRTVLGPPGLVLLLYGILALANILYPAGAVIGILLIVGLYMLYKGFGLDD 206
Query: 120 -----------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ I ++ +++I+ + I + L+ TF+
Sbjct: 207 LVAELLERVREALYEGRVSFITYVVAGLLLILGGASSLTIALSSSAGALLAISTFILY 264
>gnl|CDD|227100 COG4758, COG4758, Predicted membrane protein [Function unknown].
Length = 235
Score = 44.3 bits (105), Expect = 9e-05
Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------IIIIIII 120
K+ + II I + ++II I+I + ++ ++ +++ I II + +
Sbjct: 2 TKKKIFGFIIAIFLALMIIQIVIETLFFWPLVFLLALLLFRIYTTRSRASVLKIIALFLF 61
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I+ +I ++ ++ II I I + +II I
Sbjct: 62 FAIVFLIPFTLLGFLLAIIFIFIGLYLIIKYII 94
Score = 29.3 bits (66), Expect = 6.4
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
I II I + ++II I+I + ++ ++ L+ +
Sbjct: 6 IFGFIIAIFLALMIIQIVIETLFFWPLVFLLALLLFRIYTT 46
Score = 28.5 bits (64), Expect = 9.9
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 117 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
I II I + ++II I+I + ++ ++ + L +T
Sbjct: 6 IFGFIIAIFLALMIIQIVIETLFFWPLVFLLALLLFRIYT 45
>gnl|CDD|214819 smart00793, AgrB, Accessory gene regulator B. The accessory gene
regulator (agr) of Staphylococcus aureus is the central
regulatory system that controls the gene expression for
a large set of virulence factors. The arg locus consists
of two transcripts: RNAII and RNAIII. RNAII encodes four
genes (agrA, B, C, and D) whose gene products assemble a
quorum sensing system. At low cell density, the agr
genes are continuously expressed at basal levels. A
signal molecule, autoinducing peptide (AIP), produced
and secreted by the bacteria, accumulates outside of the
cells. When the cell density increases and the AIP
concentration reaches a threshold, it activates the agr
response, i.e. activation of secreted protein gene
expression and subsequent repression of cell
wall-associated protein genes. AgrB and AgrD are
essential for the production of the autoinducing peptide
which functions as a signal for quorum sensing. AgrB is
a transmembrane protein. AgrB is involved in the
proteolytic processing of AgrD and may have both
proteolytic enzyme activity and a transporter
facilitating the export of the processed AgrD peptide.
Length = 184
Score = 43.4 bits (103), Expect = 9e-05
Identities = 17/101 (16%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------------III 116
++ III + I +I + + + I+ + +I +++I I +
Sbjct: 80 TLLSIIIFVGIPFLIKFLDLNLPFILGLFLIGLVLIYIYAPADTEKQPVIPEKLKKKLKK 139
Query: 117 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
II+ +I+I+I +++ +I++ I++ + T+
Sbjct: 140 KSIILSLILILISLLVPNEPYKSLILLGILLQSITLLPITY 180
Score = 40.7 bits (96), Expect = 9e-04
Identities = 18/104 (17%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------------- 117
++ ++ III + I +I + + + I+ + +I +++I I
Sbjct: 74 KSSLLCTLLSIIIFVGIPFLIKFLDLNLPFILGLFLIGLVLIYIYAPADTEKQPVIPEKL 133
Query: 118 --------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
II+ +I+I+I +++ +I++ I++ I L+
Sbjct: 134 KKKLKKKSIILSLILILISLLVPNEPYKSLILLGILLQSITLLP 177
Score = 40.3 bits (95), Expect = 0.001
Identities = 17/93 (18%), Positives = 45/93 (48%), Gaps = 19/93 (20%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------------I 115
KY + +I+I +I +II+ + +++ + + +I+ + + + I
Sbjct: 25 KYGLEVILINLIKLIIVYGVALLLGVFLETLIVHLSFLFLRRFAGGAHAKSSLLCTLLSI 84
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
II + I +I + + + I+ + +I +++I I
Sbjct: 85 IIFVGIPFLIKFLDLNLPFILGLFLIGLVLIYI 117
Score = 40.3 bits (95), Expect = 0.001
Identities = 16/92 (17%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIII 126
III + I +I + + + I+ + +I +++I I +I + + II
Sbjct: 84 IIIFVGIPFLIKFLDLNLPFILGLFLIGLVLIYIYAPADTEKQPVIPEKLKKKLKKKSII 143
Query: 127 IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+ +I+I+I +++ +I++ ++ +
Sbjct: 144 LSLILILISLLVPNEPYKSLILLGILLQSITL 175
Score = 39.5 bits (93), Expect = 0.002
Identities = 16/99 (16%), Positives = 42/99 (42%), Gaps = 24/99 (24%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------------------IIII 111
+ I +I + + + I+ + +I +++I I II+
Sbjct: 86 IFVGIPFLIKFLDLNLPFILGLFLIGLVLIYIYAPADTEKQPVIPEKLKKKLKKKSIILS 145
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+I+I+I +++ +I++ I++ I ++ I + D
Sbjct: 146 LILILISLLVPNEPYKSLILLGILLQSITLLPITYKLED 184
Score = 37.6 bits (88), Expect = 0.008
Identities = 13/56 (23%), Positives = 33/56 (58%)
Query: 60 TATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 115
T + ++ E ++K+ K II+ +I+I+I +++ +I++ I++ I ++ I
Sbjct: 123 TEKQPVIPEKLKKKLKKKSIILSLILILISLLVPNEPYKSLILLGILLQSITLLPI 178
Score = 34.1 bits (79), Expect = 0.14
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
K+ II+ +I+I+I +++ +I++ I++ I ++ I
Sbjct: 133 LKKKLKKKSIILSLILILISLLVPNEPYKSLILLGILLQSITLLPI 178
Score = 30.3 bits (69), Expect = 2.2
Identities = 13/79 (16%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------IIIIIII 141
+ +I+I +I +II+ + +++ + + +I+ + + + ++ III
Sbjct: 28 LEVILINLIKLIIVYGVALLLGVFLETLIVHLSFLFLRRFAGGAHAKSSLLCTLLSIIIF 87
Query: 142 IIIIIIIIDLIFDFTFMYL 160
+ I +I L + F+
Sbjct: 88 VGIPFLIKFLDLNLPFILG 106
>gnl|CDD|225694 COG3152, COG3152, Predicted membrane protein [Function unknown].
Length = 125
Score = 42.3 bits (100), Expect = 9e-05
Identities = 10/88 (11%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------- 125
RS++ +I+ +II +++ ++ I+ + I +++++ + ++ + + + + +
Sbjct: 20 RSEFWYVILFNLIIGVVLFVLAFILGLSIAGVLVLLTALYLLALFLPTLALTVRRLHDRG 79
Query: 126 ---IIIIIIIIIIIIIIIIIIIIIIIID 150
++ +I ++ I+ ++I+ +
Sbjct: 80 RSGWWALLALIPVVGWIVGLLIVFGCLP 107
Score = 38.0 bits (89), Expect = 0.003
Identities = 10/86 (11%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------- 123
R Y+I+ +II +++ ++ I+ + I +++++ + ++ + + + + +
Sbjct: 20 RSEFWYVILFNLIIGVVLFVLAFILGLSIAGVLVLLTALYLLALFLPTLALTVRRLHDRG 79
Query: 124 ---IIIIIIIIIIIIIIIIIIIIIII 146
++ +I ++ I+ ++I+
Sbjct: 80 RSGWWALLALIPVVGWIVGLLIVFGC 105
Score = 30.3 bits (69), Expect = 1.2
Identities = 6/46 (13%), Positives = 26/46 (56%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I+ +II +++ ++ I+ + I +++++ + ++ + + + L
Sbjct: 27 ILFNLIIGVVLFVLAFILGLSIAGVLVLLTALYLLALFLPTLALTV 72
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 43.6 bits (103), Expect = 9e-05
Identities = 11/61 (18%), Positives = 36/61 (59%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
K II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ +
Sbjct: 1 SKKSRIISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCL 60
Query: 133 I 133
+
Sbjct: 61 L 61
Score = 43.6 bits (103), Expect = 9e-05
Identities = 12/61 (19%), Positives = 37/61 (60%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
SK II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ +
Sbjct: 1 SKKSRIISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCL 60
Query: 134 I 134
+
Sbjct: 61 L 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 42.4 bits (100), Expect = 2e-04
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ ++
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 41.3 bits (97), Expect = 5e-04
Identities = 11/56 (19%), Positives = 35/56 (62%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ L+
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
Score = 41.3 bits (97), Expect = 5e-04
Identities = 11/61 (18%), Positives = 38/61 (62%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
K+S+ I II+II+ +++I I ++++ + +I ++ I ++ + ++++ + ++ +
Sbjct: 1 SKKSRIISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCL 60
Query: 131 I 131
+
Sbjct: 61 L 61
Score = 41.3 bits (97), Expect = 6e-04
Identities = 10/56 (17%), Positives = 33/56 (58%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
II II+II+ +++I I ++++ + +I ++ I ++ + ++++ + + +
Sbjct: 6 IISIILIILGLLLIASGIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLL 61
>gnl|CDD|223843 COG0772, FtsW, Bacterial cell division membrane protein [Cell
division and chromosome partitioning].
Length = 381
Score = 44.9 bits (107), Expect = 1e-04
Identities = 18/139 (12%), Positives = 59/139 (42%), Gaps = 53/139 (38%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIII---------------------IIIII---- 102
F+RKRS I++ +II++++++++ + I +I+
Sbjct: 74 RFLRKRSFAILLYVIILLLLVLVLFFGSSVNGAKRWIALGGLSIQPSEFAKIALILYLAA 133
Query: 103 ---------------IIIIIIIIIIIIIIIII-------IIIIIIIIIIIII------II 134
+ +I+++ + ++I++ +++ I++ ++ + I
Sbjct: 134 YLSRKGDEIKSFLRLFLKLILLVALPALLILLQPDLGTALLLFAILLFMLFLAGLRWRWI 193
Query: 135 IIIIIIIIIIIIIIIDLIF 153
+ ++++ + +I+I IF
Sbjct: 194 LALLVLALAGFVILILFIF 212
Score = 43.4 bits (103), Expect = 3e-04
Identities = 8/77 (10%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 91 IIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ +I+++ + ++I++ +++ I++ ++ + + I+ ++++ + +I+I
Sbjct: 149 FLKLILLVALPALLILLQPDLGTALLLFAILLFMLFLAGLRWRWILALLVLALAGFVILI 208
Query: 144 IIIIIIDLIFDFTFMYL 160
+ I + +L
Sbjct: 209 LFIFLKPYQKKRVTSFL 225
Score = 36.1 bits (84), Expect = 0.056
Identities = 12/116 (10%), Positives = 50/116 (43%), Gaps = 31/116 (26%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----- 123
F+ ++ ++++ +I+ +++I+ + + + I++ +II++++++++ +
Sbjct: 49 FLIRQLVWLLLGLILALLVILRLPLRFLRKRSFAILLYVIILLLLVLVLFFGSSVNGAKR 108
Query: 124 ----------------IIIII----------IIIIIIIIIIIIIIIIIIIIIDLIF 153
I +I+ I + + + +I+++ + LI
Sbjct: 109 WIALGGLSIQPSEFAKIALILYLAAYLSRKGDEIKSFLRLFLKLILLVALPALLIL 164
Score = 33.4 bits (77), Expect = 0.37
Identities = 10/94 (10%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIIIIIIIIII 121
MV +++++ +++++++++ I ++++ + +I ++ +++ +I+
Sbjct: 5 MVKKWLKRLIDRLLLLLLLLLAAIGLVMVYSASSAVAERRGPFYFLIRQLVWLLLGLILA 64
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
+++I+ + + + I++ +II+++ ++ F
Sbjct: 65 LLVILRLPLRFLRKRSFAILLYVIILLLLVLVLF 98
>gnl|CDD|216883 pfam02118, Srg, Srg family chemoreceptor.
Length = 275
Score = 44.5 bits (106), Expect = 1e-04
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S+Y +++III II I I+I + + + I + + +I I+I
Sbjct: 121 SRYYKLVLIIIFIIPFSFIWNILISRVYVNPVNGGFSINYEKAVPWASTSLFQLIYFILI 180
Query: 134 IIIIIIIIIIIIIIIIDL 151
++ II I+ + L
Sbjct: 181 LVFTIITSIVTSYKLAKL 198
Score = 38.7 bits (91), Expect = 0.006
Identities = 16/74 (21%), Positives = 30/74 (40%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+++III II I I+I + + + I + + +I I+I++
Sbjct: 123 YYKLVLIIIFIIPFSFIWNILISRVYVNPVNGGFSINYEKAVPWASTSLFQLIYFILILV 182
Query: 139 IIIIIIIIIIIDLI 152
II I+ L
Sbjct: 183 FTIITSIVTSYKLA 196
Score = 35.6 bits (83), Expect = 0.071
Identities = 14/71 (19%), Positives = 28/71 (39%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+++III II I I+I + + + I + + +I I+I++
Sbjct: 123 YYKLVLIIIFIIPFSFIWNILISRVYVNPVNGGFSINYEKAVPWASTSLFQLIYFILILV 182
Query: 149 IDLIFDFTFMY 159
+I Y
Sbjct: 183 FTIITSIVTSY 193
Score = 33.7 bits (78), Expect = 0.28
Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIII 122
F K + + +I I+I++ II I+ + + I + II I
Sbjct: 156 FSINYEKAVPWASTSLFQLIYFILILVFTIITSIVTSYKLAKLSKRIKSVERSLTIITIF 215
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
I ++ +++ ++ + ++ F
Sbjct: 216 ISVVFLLVAAWQVLNSFAFFFNFLPDSKILLTLLF 250
>gnl|CDD|221690 pfam12650, DUF3784, Domain of unknown function (DUF3784). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 96 and 110
amino acids in length.
Length = 96
Score = 41.4 bits (98), Expect = 1e-04
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+ +I II++I ++ + + II II I+++I ++I L
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLAKGNRKR 96
Score = 41.4 bits (98), Expect = 1e-04
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
+K K++ + +I II++I ++ + + II II I+++I ++I +
Sbjct: 39 EKKLCKFMGNFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 40.2 bits (95), Expect = 2e-04
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
++ KY + + + +I II++I ++ + + II II I+++I ++I +
Sbjct: 33 EKEKYDEKKLCKFMGNFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLAKGNRKR 96
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ +I II++I ++ + + II II I+++I ++I +
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 37.2 bits (87), Expect = 0.003
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
+C+F+ I II++I ++ + + II II I+++I ++I +
Sbjct: 42 LCKFMGNFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLA 90
Score = 36.4 bits (85), Expect = 0.006
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
+ +I II++I ++ + + II II I++ + R
Sbjct: 48 NFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLAKGNRKR 96
>gnl|CDD|221791 pfam12822, DUF3816, Protein of unknown function (DUF3816). This
family of proteins is functionally uncharacterized but
are likely to be membrane transporters. This family of
proteins is found in bacteria and archaea. Proteins in
this family are typically between 177 and 208 amino
acids in length. A subset of this family is associated
with the TM1506 proteins. In this context, transport
through the channel is predicted to be regulated by the
TM1506 protein by either regulating redox potential or
modification of substrates.
Length = 168
Score = 43.0 bits (102), Expect = 1e-04
Identities = 12/96 (12%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIII 125
K +++I ++ + I+++ I + I I +++ +I ++ ++ ++
Sbjct: 1 KRLVLIALLSALSIVLMYIPFPPLKIDFSHIPVLLGAFLLGPVAGALIGLLTSLLSFLLF 60
Query: 126 IIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
++ + + I+ +I LI+ K
Sbjct: 61 GGGPFALVGPLANFLPRILFGLIAGLIYKKLRKKTK 96
Score = 39.1 bits (92), Expect = 0.002
Identities = 13/76 (17%), Positives = 39/76 (51%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+K K ++ II+ I+ ++ ++ + +I+ + + + I I+ + +++ ++
Sbjct: 93 KKTKKRAVLAIILGTILGTLVATLLNLGLILPLYAKFLGMPISAIVGALFAAVLLPVLPF 152
Query: 131 IIIIIIIIIIIIIIII 146
+I II II+ ++
Sbjct: 153 NLIKGIIASIIVYLLY 168
Score = 38.7 bits (91), Expect = 0.003
Identities = 14/84 (16%), Positives = 45/84 (53%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
++ + +RK++K ++ II+ I+ ++ ++ + +I+ + + + I I+ +
Sbjct: 85 GLIYKKLRKKTKKRAVLAIILGTILGTLVATLLNLGLILPLYAKFLGMPISAIVGALFAA 144
Query: 124 IIIIIIIIIIIIIIIIIIIIIIII 147
+++ ++ +I II II+ ++
Sbjct: 145 VLLPVLPFNLIKGIIASIIVYLLY 168
Score = 36.1 bits (84), Expect = 0.022
Identities = 12/113 (10%), Positives = 38/113 (33%), Gaps = 25/113 (22%)
Query: 76 YIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
YI + I I +++ +I ++ ++ ++ ++ + +
Sbjct: 18 YIPFPPLKIDFSHIPVLLGAFLLGPVAGALIGLLTSLLSFLLFGGGPFALVGPLANFLPR 77
Query: 126 IIIIII---------------IIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
I+ +I ++ II+ I+ ++ + + +Y K
Sbjct: 78 ILFGLIAGLIYKKLRKKTKKRAVLAIILGTILGTLVATLLNLGLILPLYAKFL 130
Score = 36.1 bits (84), Expect = 0.028
Identities = 13/79 (16%), Positives = 39/79 (49%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+K K ++ II+ I+ ++ ++ + +I+ + + + I I+ + +++
Sbjct: 89 KKLRKKTKKRAVLAIILGTILGTLVATLLNLGLILPLYAKFLGMPISAIVGALFAAVLLP 148
Query: 131 IIIIIIIIIIIIIIIIIII 149
++ +I II II+ ++
Sbjct: 149 VLPFNLIKGIIASIIVYLL 167
Score = 35.7 bits (83), Expect = 0.030
Identities = 13/81 (16%), Positives = 40/81 (49%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ + R K ++ II+ I+ ++ ++ + +I+ + + + I I+ + +++
Sbjct: 88 YKKLRKKTKKRAVLAIILGTILGTLVATLLNLGLILPLYAKFLGMPISAIVGALFAAVLL 147
Query: 129 IIIIIIIIIIIIIIIIIIIII 149
++ +I II II+ ++
Sbjct: 148 PVLPFNLIKGIIASIIVYLLY 168
Score = 33.7 bits (78), Expect = 0.17
Identities = 12/85 (14%), Positives = 41/85 (48%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
++ + K+ + ++ II+ I+ ++ ++ + +I+ + + + I I+ +
Sbjct: 82 LIAGLIYKKLRKKTKKRAVLAIILGTILGTLVATLLNLGLILPLYAKFLGMPISAIVGAL 141
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIII 149
+++ ++ +I II II+ +
Sbjct: 142 FAAVLLPVLPFNLIKGIIASIIVYL 166
Score = 32.6 bits (75), Expect = 0.33
Identities = 10/82 (12%), Positives = 33/82 (40%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++ + + I+ +I +I + ++ II+ I+ ++ ++ + +I+
Sbjct: 64 PFALVGPLANFLPRILFGLIAGLIYKKLRKKTKKRAVLAIILGTILGTLVATLLNLGLIL 123
Query: 139 IIIIIIIIIIIDLIFDFTFMYL 160
+ + + I I F +
Sbjct: 124 PLYAKFLGMPISAIVGALFAAV 145
Score = 32.2 bits (74), Expect = 0.50
Identities = 12/70 (17%), Positives = 37/70 (52%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++ II+ I+ ++ ++ + +I+ + + + I I+ + +++ ++ +I I
Sbjct: 99 AVLAIILGTILGTLVATLLNLGLILPLYAKFLGMPISAIVGALFAAVLLPVLPFNLIKGI 158
Query: 144 IIIIIIDLIF 153
I II+ L++
Sbjct: 159 IASIIVYLLY 168
Score = 32.2 bits (74), Expect = 0.53
Identities = 11/92 (11%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIII 131
+I ++ ++ ++ ++ + + I+ +I +I + ++ II+
Sbjct: 46 ALIGLLTSLLSFLLFGGGPFALVGPLANFLPRILFGLIAGLIYKKLRKKTKKRAVLAIIL 105
Query: 132 IIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
I+ ++ ++ + +I+ L F M +
Sbjct: 106 GTILGTLVATLLNLGLILPLYAKFLGMPISAI 137
Score = 31.8 bits (73), Expect = 0.61
Identities = 11/85 (12%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 77 IIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ + I+ +I +I ++ II+ I+ ++ ++ + +I+ + +
Sbjct: 71 LANFLPRILFGLIAGLIYKKLRKKTKKRAVLAIILGTILGTLVATLLNLGLILPLYAKFL 130
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLI 152
+ I I+ + +++ ++ +LI
Sbjct: 131 GMPISAIVGALFAAVLLPVLPFNLI 155
Score = 31.4 bits (72), Expect = 0.75
Identities = 13/94 (13%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 76 YIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+ I+ +I +I ++ II+ I+ ++ ++ + +I+ + + +
Sbjct: 73 NFLPRILFGLIAGLIYKKLRKKTKKRAVLAIILGTILGTLVATLLNLGLILPLYAKFLGM 132
Query: 127 IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I I+ + +++ ++ +I I +YL
Sbjct: 133 PISAIVGALFAAVLLPVLPFNLIKGIIASIIVYL 166
Score = 31.0 bits (71), Expect = 1.3
Identities = 10/81 (12%), Positives = 34/81 (41%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++ + + I+ +I +I + ++ II+ I+ ++ ++ + +I+ +
Sbjct: 66 ALVGPLANFLPRILFGLIAGLIYKKLRKKTKKRAVLAIILGTILGTLVATLLNLGLILPL 125
Query: 137 IIIIIIIIIIIIIDLIFDFTF 157
+ + I I+ +F
Sbjct: 126 YAKFLGMPISAIVGALFAAVL 146
Score = 29.9 bits (68), Expect = 2.6
Identities = 10/84 (11%), Positives = 34/84 (40%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++ + + I+ +I +I + ++ II+ I+ ++ ++ + +I+
Sbjct: 64 PFALVGPLANFLPRILFGLIAGLIYKKLRKKTKKRAVLAIILGTILGTLVATLLNLGLIL 123
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYL 160
+ + + I + F + L
Sbjct: 124 PLYAKFLGMPISAIVGALFAAVLL 147
>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism].
Length = 265
Score = 44.2 bits (105), Expect = 1e-04
Identities = 10/82 (12%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIII 131
K +I I+++I+ ++ +++ + ++++++ I+ I ++ +I+ + I
Sbjct: 3 KQRVITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPID 62
Query: 132 IIIIIIIIIIIIIIIIIIDLIF 153
+ ++++ ++ L F
Sbjct: 63 LGLVLLDGRRLLGDGKETLLGF 84
Score = 43.8 bits (104), Expect = 2e-04
Identities = 8/82 (9%), Positives = 39/82 (47%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+I I+++I+ ++ +++ + ++++++ I+ I+ ++ +I+ + I
Sbjct: 3 KQRVITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPID 62
Query: 139 IIIIIIIIIIIDLIFDFTFMYL 160
+ ++++ + T +
Sbjct: 63 LGLVLLDGRRLLGDGKETLLGF 84
Score = 43.1 bits (102), Expect = 2e-04
Identities = 9/84 (10%), Positives = 40/84 (47%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I I+++I+ ++ +++ + ++++++ I+ I+ ++ +I+ + I
Sbjct: 3 KQRVITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPID 62
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYL 160
+ ++++ ++ D L
Sbjct: 63 LGLVLLDGRRLLGDGKETLLGFLL 86
Score = 42.3 bits (100), Expect = 5e-04
Identities = 9/90 (10%), Positives = 41/90 (45%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I I+++I+ ++ +++ + ++++++ I+ I+ ++ +I+ + I + +
Sbjct: 6 VITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGL 65
Query: 136 IIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
+++ ++ L+ L +
Sbjct: 66 VLLDGRRLLGDGKETLLGFLLGFLLGLVLL 95
Score = 39.2 bits (92), Expect = 0.005
Identities = 9/124 (7%), Positives = 50/124 (40%), Gaps = 30/124 (24%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------------- 111
+ ++ + + ++ ++ + ++ +I+++++ + +
Sbjct: 102 SDSLFKLFGLLYVGVGLLALLPFRLGVLYSGLILLLLLFLGVWAGDIGAYFVGRRFGKHK 161
Query: 112 --------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
I + +++ +++I ++ +I+ I ++I+ +++++ + D
Sbjct: 162 LAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILGLLLVLTSQLGDLFE 221
Query: 158 MYLK 161
Y+K
Sbjct: 222 SYIK 225
Score = 37.7 bits (88), Expect = 0.015
Identities = 8/94 (8%), Positives = 44/94 (46%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ ++++++ I+ I+ ++ +I+ + I + ++++ ++ ++
Sbjct: 25 LYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLVLLDGRRLLGDGKETLLGF 84
Query: 139 IIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFL 172
++ ++ ++++ +I+ + K F + + L
Sbjct: 85 LLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGL 118
Score = 36.5 bits (85), Expect = 0.032
Identities = 7/78 (8%), Positives = 38/78 (48%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
Y ++++++ I+ I+ ++ +I+ + I + ++++ ++ ++ +
Sbjct: 26 YFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLVLLDGRRLLGDGKETLLGFL 85
Query: 136 IIIIIIIIIIIIIIDLIF 153
+ ++ ++++ +I L
Sbjct: 86 LGFLLGLVLLGVIYYLSD 103
Score = 34.2 bits (79), Expect = 0.18
Identities = 6/56 (10%), Positives = 26/56 (46%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
+I I+++I+ ++ +++ + ++++++ I+ I+ + L
Sbjct: 3 KQRVITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILG 58
Score = 33.1 bits (76), Expect = 0.43
Identities = 7/84 (8%), Positives = 39/84 (46%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++++++ I+ I+ ++ +I+ + I + ++++ ++ ++ ++
Sbjct: 29 LLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLVLLDGRRLLGDGKETLLGFLLGF 88
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYL 160
++ ++++ +I + F L
Sbjct: 89 LLGLVLLGVIYYLSDSLFKLFGLL 112
Score = 30.7 bits (70), Expect = 2.0
Identities = 5/49 (10%), Positives = 23/49 (46%)
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
+I I+++I+ ++ +++ + ++++++ I I +
Sbjct: 3 KQRVITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVL 51
>gnl|CDD|237906 PRK15086, PRK15086, ethanolamine utilization protein EutH;
Provisional.
Length = 372
Score = 44.5 bits (106), Expect = 1e-04
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-- 134
++ II I I +I ++ +I+ +I +II I++ + + I +I +I
Sbjct: 144 VLAGIITIPIGCLIGGLVAGFDFALILRNLIPVIIFAILLALGLKFIPEKMIKGFLIFGK 203
Query: 135 IIIIIIIIIIIIIIIDLIFDFT 156
I+ +I I + I+ + +
Sbjct: 204 FIVALITIGLAAAIVQSLTGWK 225
Score = 42.6 bits (101), Expect = 5e-04
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIII 132
II I I +I ++ +I+ +I +II I++ + + +I +I I+
Sbjct: 148 IITIPIGCLIGGLVAGFDFALILRNLIPVIIFAILLALGLKFIPEKMIKGFLIFGKFIVA 207
Query: 133 IIIIIIIIIIIIIIIIIDLIFDF 155
+I I + I+ + LI F
Sbjct: 208 LITIGLAAAIVQSLTGWKLIPGF 230
Score = 42.2 bits (100), Expect = 7e-04
Identities = 15/76 (19%), Positives = 33/76 (43%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++ +I+ +I +II I++ + + I +I +I I+ +I I + I+
Sbjct: 160 LVAGFDFALILRNLIPVIIFAILLALGLKFIPEKMIKGFLIFGKFIVALITIGLAAAIVQ 219
Query: 139 IIIIIIIIIIIDLIFD 154
+ +I D I
Sbjct: 220 SLTGWKLIPGFDPIKF 235
Score = 36.8 bits (86), Expect = 0.030
Identities = 13/62 (20%), Positives = 30/62 (48%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ +I+ +I +II I++ + + I +I +I I+ +I I + I+ +
Sbjct: 166 FALILRNLIPVIIFAILLALGLKFIPEKMIKGFLIFGKFIVALITIGLAAAIVQSLTGWK 225
Query: 136 II 137
+I
Sbjct: 226 LI 227
Score = 29.5 bits (67), Expect = 6.4
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-IIIIIDLIFDFTFMYLKEFRV 165
++ II I I +I ++ +I+ +I +II I++ + L F +K F +
Sbjct: 144 VLAGIITIPIGCLIGGLVAGFDFALILRNLIPVIIFAILLALGLKF-IPEKMIKGFLI 200
>gnl|CDD|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family
[Inorganic ion transport and metabolism].
Length = 416
Score = 44.6 bits (106), Expect = 1e-04
Identities = 14/105 (13%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
++ F+ R +I I+ + III+ +++ +++ +I+ +I ++
Sbjct: 312 VMEGFLNWRIPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLL 371
Query: 125 III-------------IIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
++ + ++ I++I+I+ + II+++ +
Sbjct: 372 LLTSDKKLMGDYKNPRWLTVLGWIVVILIVALNIILLVGTLGGLL 416
Score = 42.7 bits (101), Expect = 5e-04
Identities = 17/87 (19%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-- 130
R +Y+ + I++ I+ I I I + I I + ++ I +II +I + ++II+
Sbjct: 84 RERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLL 143
Query: 131 ----IIIIIIIIIIIIIIIIIIIDLIF 153
++ +++I+ ++++I+ +
Sbjct: 144 KGYRLLERVVLILGLVLVILFVYVAFV 170
Score = 35.7 bits (83), Expect = 0.074
Identities = 18/100 (18%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIIII 124
Y ++ +I++ ++ I+ + + I+ + + I++ I+ I I
Sbjct: 48 YSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATD 107
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
I + I I + ++ I +II +I + + LK +R
Sbjct: 108 IAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLKGYR 147
Score = 32.6 bits (75), Expect = 0.71
Identities = 9/60 (15%), Positives = 28/60 (46%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+I I+ + III+ +++ +++ +I+ +I ++++ L+ D+
Sbjct: 327 RLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNP 386
>gnl|CDD|216994 pfam02361, CbiQ, Cobalt transport protein. This family consists of
various cobalt transport proteins Most of which are
found in Cobalamin (Vitamin B12) biosynthesis operons.
In Salmonella the cbiN cbiQ (product CbiQ in this
family) and cbiO are likely to form an active cobalt
transport system.
Length = 217
Score = 43.5 bits (103), Expect = 1e-04
Identities = 7/71 (9%), Positives = 43/71 (60%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+I +++++++ ++ + ++III ++++ ++++ + + + + ++ ++ II++
Sbjct: 14 LIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLF 73
Query: 149 IDLIFDFTFMY 159
++ + F++
Sbjct: 74 QNIGTEGQFVF 84
Score = 43.5 bits (103), Expect = 1e-04
Identities = 9/66 (13%), Positives = 39/66 (59%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
R K I +++++++ ++ + ++III ++++ ++++ + + + + ++ ++ II
Sbjct: 11 RVKLIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFII 70
Query: 133 IIIIII 138
++ I
Sbjct: 71 LLFQNI 76
Score = 42.3 bits (100), Expect = 3e-04
Identities = 9/72 (12%), Positives = 40/72 (55%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+I +++++++ ++ + ++III ++++ ++++ + + + + ++ ++ II++
Sbjct: 14 LIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLF 73
Query: 147 IIIDLIFDFTFM 158
I F F
Sbjct: 74 QNIGTEGQFVFS 85
Score = 41.9 bits (99), Expect = 4e-04
Identities = 7/71 (9%), Positives = 38/71 (53%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+I +++++++ ++ + ++III ++++ ++++ + + + + ++ + F +
Sbjct: 14 LIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLF 73
Query: 161 KEFRVEQCPLF 171
+ E +F
Sbjct: 74 QNIGTEGQFVF 84
Score = 41.6 bits (98), Expect = 5e-04
Identities = 7/63 (11%), Positives = 38/63 (60%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I +++++++ ++ + ++III ++++ ++++ + + + + ++ ++ II++
Sbjct: 14 LIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLF 73
Query: 137 III 139
I
Sbjct: 74 QNI 76
Score = 41.6 bits (98), Expect = 5e-04
Identities = 7/63 (11%), Positives = 38/63 (60%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+I +++++++ ++ + ++III ++++ ++++ + + + + ++ ++ II++
Sbjct: 14 LIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLF 73
Query: 138 III 140
I
Sbjct: 74 QNI 76
Score = 41.6 bits (98), Expect = 5e-04
Identities = 7/63 (11%), Positives = 38/63 (60%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+I +++++++ ++ + ++III ++++ ++++ + + + + ++ ++ II++
Sbjct: 14 LIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLF 73
Query: 139 III 141
I
Sbjct: 74 QNI 76
Score = 41.6 bits (98), Expect = 5e-04
Identities = 7/63 (11%), Positives = 38/63 (60%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+I +++++++ ++ + ++III ++++ ++++ + + + + ++ ++ II++
Sbjct: 14 LIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLF 73
Query: 140 III 142
I
Sbjct: 74 QNI 76
Score = 41.6 bits (98), Expect = 5e-04
Identities = 7/63 (11%), Positives = 38/63 (60%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+I +++++++ ++ + ++III ++++ ++++ + + + + ++ ++ II++
Sbjct: 14 LIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLF 73
Query: 141 III 143
I
Sbjct: 74 QNI 76
Score = 41.6 bits (98), Expect = 5e-04
Identities = 7/63 (11%), Positives = 38/63 (60%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+I +++++++ ++ + ++III ++++ ++++ + + + + ++ ++ II++
Sbjct: 14 LIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLF 73
Query: 142 III 144
I
Sbjct: 74 QNI 76
Score = 41.6 bits (98), Expect = 5e-04
Identities = 7/63 (11%), Positives = 38/63 (60%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+I +++++++ ++ + ++III ++++ ++++ + + + + ++ ++ II++
Sbjct: 14 LIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLF 73
Query: 143 III 145
I
Sbjct: 74 QNI 76
Score = 41.6 bits (98), Expect = 5e-04
Identities = 7/63 (11%), Positives = 38/63 (60%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+I +++++++ ++ + ++III ++++ ++++ + + + + ++ ++ II++
Sbjct: 14 LIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLF 73
Query: 144 III 146
I
Sbjct: 74 QNI 76
Score = 41.6 bits (98), Expect = 5e-04
Identities = 7/63 (11%), Positives = 38/63 (60%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+I +++++++ ++ + ++III ++++ ++++ + + + + ++ ++ II++
Sbjct: 14 LIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLF 73
Query: 145 III 147
I
Sbjct: 74 QNI 76
Score = 41.6 bits (98), Expect = 5e-04
Identities = 7/63 (11%), Positives = 38/63 (60%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+I +++++++ ++ + ++III ++++ ++++ + + + + ++ ++ II++
Sbjct: 14 LIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLF 73
Query: 146 III 148
I
Sbjct: 74 QNI 76
Score = 38.5 bits (90), Expect = 0.007
Identities = 8/73 (10%), Positives = 37/73 (50%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+++++ ++ + ++III ++++ ++++ + + + + ++ ++ II++ I
Sbjct: 19 LLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLFQNIGT 78
Query: 137 IIIIIIIIIIIII 149
+ I I
Sbjct: 79 EGQFVFSGGGIGI 91
Score = 37.3 bits (87), Expect = 0.016
Identities = 8/72 (11%), Positives = 35/72 (48%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+++ ++ + ++III ++++ ++++ + + + + ++ ++ II++ I
Sbjct: 20 LVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLFQNIGTE 79
Query: 136 IIIIIIIIIIII 147
+ I I
Sbjct: 80 GQFVFSGGGIGI 91
Score = 28.8 bits (65), Expect = 8.2
Identities = 10/88 (11%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 76 YIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
++III ++++ ++++ + + ++ ++ II++ I + I
Sbjct: 31 VGLLIIIALLLLTLLLVGLPRFLARFLRLPLLFPLLGFIILLFQNIGTEGQFVFSGGGIG 90
Query: 130 I----IIIIIIIIIIIIIIIIIIIDLIF 153
I ++ +++ + I + ++ L
Sbjct: 91 ITSWGLLRGLLLALRISTSLSALLFLAL 118
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and
similar).
Length = 27
Score = 39.1 bits (92), Expect = 1e-04
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 410 YKSTKCNDVQQAGYCPRGVFCAFAHVD 436
YK+ C + G C G C FAH
Sbjct: 1 YKTELCRFFSRTGTCKYGDRCKFAHGQ 27
Score = 31.0 bits (71), Expect = 0.099
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 213 CTKYDETTGLCPDGDECPFLH 233
C + T G C GD C F H
Sbjct: 6 CRFFSRT-GTCKYGDRCKFAH 25
>gnl|CDD|218334 pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial
proteins is involved in the synthesis of O-antigen, a
lipopolysaccharide found in the outer membrane in
gram-negative bacteria. This family includes O-antigen
ligases such as E. coli RfaL.
Length = 152
Score = 42.4 bits (100), Expect = 1e-04
Identities = 9/100 (9%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 85 IIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ ++++++ +++ I+ +++ +++++++ + ++ +++++++++++++ I
Sbjct: 1 LALVLLLLALVLTGSRGAILALLVALLLLLLLRLRRRRKKRLLALLLLVVLLLVVLLAFI 60
Query: 139 IIIIIIIIIIIDLIFDFTFMYLKEFRVEQ----CPLFLQH 174
I + +++ I +F + R+E L +H
Sbjct: 61 IGLSLLLENRILRLFSASADSSSGGRLEIWKSALDLIKEH 100
>gnl|CDD|224735 COG1822, COG1822, Predicted archaeal membrane protein [Function
unknown].
Length = 349
Score = 44.3 bits (105), Expect = 1e-04
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIII 127
S III++I + + +I +I I+ +II + I + + II I
Sbjct: 7 SPKSIIILLIFFLALALIGVITILSLIIGPFALFFIYGFTGPFVAGKGIRLLRFIIDDIF 66
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLI 152
+++ ++ I I+ I ++II I LI
Sbjct: 67 LLLSLLSIFFILGIQLLIIGAIPLI 91
Score = 43.1 bits (102), Expect = 3e-04
Identities = 17/77 (22%), Positives = 41/77 (53%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K + + II I +++ ++ I I+ I ++II I +I + I ++ + + ++I
Sbjct: 53 KGIRLLRFIIDDIFLLLSLLSIFFILGIQLLIIGAIPLIPLAIRPLLNPKLKKLKYVLIF 112
Query: 132 IIIIIIIIIIIIIIIII 148
++ +I I++I +I
Sbjct: 113 SSYLLPLIPIVVISGLI 129
Score = 42.7 bits (101), Expect = 4e-04
Identities = 18/85 (21%), Positives = 44/85 (51%)
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
FV + ++ II I +++ ++ I I+ I ++II I +I + I ++ + +
Sbjct: 47 GPFVAGKGIRLLRFIIDDIFLLLSLLSIFFILGIQLLIIGAIPLIPLAIRPLLNPKLKKL 106
Query: 127 IIIIIIIIIIIIIIIIIIIIIIIDL 151
++I ++ +I I++I +I +
Sbjct: 107 KYVLIFSSYLLPLIPIVVISGLIPI 131
Score = 42.4 bits (100), Expect = 5e-04
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIII 120
+R I +++ ++ I I+ I ++II I +I + I + ++I +
Sbjct: 57 LLRFIIDDIFLLLSLLSIFFILGIQLLIIGAIPLIPLAIRPLLNPKLKKLKYVLIFSSYL 116
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ +I I++I +I I+ + II+ I++ LI
Sbjct: 117 LPLIPIVVISGLIPILNYLTRFIILSILLALI 148
Score = 38.5 bits (90), Expect = 0.009
Identities = 16/90 (17%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 76 YIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-- 128
+I + + II I +++ ++ I I+ I ++II I +I + I +
Sbjct: 41 FIYGFTGPFVAGKGIRLLRFIIDDIFLLLSLLSIFFILGIQLLIIGAIPLIPLAIRPLLN 100
Query: 129 ----IIIIIIIIIIIIIIIIIIIIIDLIFD 154
+ ++I ++ +I I++I +
Sbjct: 101 PKLKKLKYVLIFSSYLLPLIPIVVISGLIP 130
Score = 38.5 bits (90), Expect = 0.010
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIIIIII 130
+I I+ +II + I + + II I +++ ++ I I+ I ++I
Sbjct: 25 GVITILSLIIGPFALFFIYGFTGPFVAGKGIRLLRFIIDDIFLLLSLLSIFFILGIQLLI 84
Query: 131 IIIIIIIIIIIII 143
I I +I + I
Sbjct: 85 IGAIPLIPLAIRP 97
Score = 37.0 bits (86), Expect = 0.029
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+II + I + ++ II I +++ ++ I I+ I ++II I
Sbjct: 30 LSLIIGPFALFFIYGFTGPFVAGKGIRLLRFIIDDIFLLLSLLSIFFILGIQLLIIGAIP 89
Query: 132 IIIIIII----------IIIIIIIIIIIDLI 152
+I + I ++I ++ LI
Sbjct: 90 LIPLAIRPLLNPKLKKLKYVLIFSSYLLPLI 120
Score = 35.8 bits (83), Expect = 0.065
Identities = 15/82 (18%), Positives = 40/82 (48%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++ I+ + III + + + +I+ +II + I+ +I +I +I+ + + II
Sbjct: 152 TPLLASILSGVFIIITYLGLFLGWLILYRLIIALSILPLIYGYRSVIALIVFGLSPVGII 211
Query: 139 IIIIIIIIIIIDLIFDFTFMYL 160
+ + + + +++ T Y
Sbjct: 212 SLRTLRLNGVESILYGATGGYY 233
Score = 34.6 bits (80), Expect = 0.17
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 31/116 (26%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIIII--- 123
I I+ I ++II I +I + I ++I ++ +I I++I +I
Sbjct: 73 SIFFILGIQLLIIGAIPLIPLAIRPLLNPKLKKLKYVLIFSSYLLPLIPIVVISGLIPIL 132
Query: 124 -------------------IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
++ I+ + III + + + +I L
Sbjct: 133 NYLTRFIILSILLALIGYRTPLLASILSGVFIIITYLGLFLGWLILYRLIIALSIL 188
Score = 34.6 bits (80), Expect = 0.18
Identities = 21/83 (25%), Positives = 47/83 (56%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S Y++ +I I++I +I I+ + II+ I++ +I ++ I+ + III + +
Sbjct: 113 SSYLLPLIPIVVISGLIPILNYLTRFIILSILLALIGYRTPLLASILSGVFIIITYLGLF 172
Query: 134 IIIIIIIIIIIIIIIIDLIFDFT 156
+ +I+ +II + I+ LI+ +
Sbjct: 173 LGWLILYRLIIALSILPLIYGYR 195
Score = 34.3 bits (79), Expect = 0.18
Identities = 15/75 (20%), Positives = 38/75 (50%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
R+ + I+ + III + + + +I+ +II + I+ +I +I +I+ + + I
Sbjct: 151 RTPLLASILSGVFIIITYLGLFLGWLILYRLIIALSILPLIYGYRSVIALIVFGLSPVGI 210
Query: 133 IIIIIIIIIIIIIII 147
I + + + + I+
Sbjct: 211 ISLRTLRLNGVESIL 225
Score = 33.9 bits (78), Expect = 0.29
Identities = 16/85 (18%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++ I+ + III + + + +I+ +II + I+ +I +I +I+ + + II +
Sbjct: 154 LLASILSGVFIIITYLGLFLGWLILYRLIIALSILPLIYGYRSVIALIVFGLSPVGIISL 213
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYLK 161
+ + + I+ + +Y K
Sbjct: 214 RTLRLNGVESILYGATGGYY-VYSK 237
Score = 33.1 bits (76), Expect = 0.46
Identities = 15/76 (19%), Positives = 37/76 (48%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
Y ++ I+ + III + + + +I+ +II + I+ +I +I +I+ + +
Sbjct: 150 YRTPLLASILSGVFIIITYLGLFLGWLILYRLIIALSILPLIYGYRSVIALIVFGLSPVG 209
Query: 136 IIIIIIIIIIIIIIDL 151
II + + + + L
Sbjct: 210 IISLRTLRLNGVESIL 225
Score = 31.6 bits (72), Expect = 1.3
Identities = 13/67 (19%), Positives = 33/67 (49%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+III + + + +I+ +II + I+ +I +I +I+ + + II + + +
Sbjct: 159 LSGVFIIITYLGLFLGWLILYRLIIALSILPLIYGYRSVIALIVFGLSPVGIISLRTLRL 218
Query: 132 IIIIIII 138
+ I+
Sbjct: 219 NGVESIL 225
Score = 31.2 bits (71), Expect = 1.9
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
III++I + + +I +I I+ +II + I + I ++ IID IF
Sbjct: 7 SPKSIIILLIFFLALALIGVITILSLIIGPFALFFIYGFTGPFVAGKGIRLLRFIIDDIF 66
Score = 30.4 bits (69), Expect = 3.1
Identities = 16/77 (20%), Positives = 38/77 (49%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
Y+ II+ I++ +I ++ I+ + III + + + +I+ +II + I+ +
Sbjct: 131 ILNYLTRFIILSILLALIGYRTPLLASILSGVFIIITYLGLFLGWLILYRLIIALSILPL 190
Query: 133 IIIIIIIIIIIIIIIII 149
I +I +I+ +
Sbjct: 191 IYGYRSVIALIVFGLSP 207
>gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The
sodium/dicarboxylate cotransporter NaDC-1 has been shown
to translocate Krebs cycle intermediates such as
succinate, citrate, and alpha-ketoglutarate across
plasma membranes rabbit, human, and rat kidney. It is
related to renal and intestinal Na+/sulfate
cotransporters and a few putative bacterial permeases.
The SLC13-type proteins belong to the ArsB/NhaD
superfamily of permeases that translocate sodium and
various anions across biological membranes in all three
kingdoms of life. A typical ArsB/NhaD permease is
composed of 8-13 transmembrane helices.
Length = 382
Score = 44.1 bits (105), Expect = 2e-04
Identities = 11/57 (19%), Positives = 32/57 (56%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ I + ++II ++ + I + ++II I+++ + I ++ + + I I I+++
Sbjct: 170 FTPIGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVF 226
Score = 44.1 bits (105), Expect = 2e-04
Identities = 11/65 (16%), Positives = 35/65 (53%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
I + ++II ++ + I + ++II I+++ + I ++ + + I I I+++ +++
Sbjct: 173 IGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVFGGVLLT 232
Query: 150 DLIFD 154
+
Sbjct: 233 KEDYK 237
Score = 43.7 bits (104), Expect = 2e-04
Identities = 12/64 (18%), Positives = 35/64 (54%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
I + ++II ++ + I + ++II I+++ + I ++ + + I I I+++ ++
Sbjct: 173 IGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVFGGVLLT 232
Query: 152 IFDF 155
D+
Sbjct: 233 KEDY 236
Score = 43.3 bits (103), Expect = 3e-04
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
I + ++II ++ + I + ++II I+++ + I ++ + + I I I+++
Sbjct: 173 IGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVF 226
Score = 43.3 bits (103), Expect = 3e-04
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
I + ++II ++ + I + ++II I+++ + I ++ + + I I I+++
Sbjct: 173 IGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVF 226
Score = 43.3 bits (103), Expect = 3e-04
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I + ++II ++ + I + ++II I+++ + I ++ + + I I I+++
Sbjct: 173 IGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVF 226
Score = 43.3 bits (103), Expect = 3e-04
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I + ++II ++ + I + ++II I+++ + I ++ + + I I I+++
Sbjct: 173 IGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVF 226
Score = 43.3 bits (103), Expect = 3e-04
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I + ++II ++ + I + ++II I+++ + I ++ + + I I I+++
Sbjct: 173 IGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVF 226
Score = 43.3 bits (103), Expect = 3e-04
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I + ++II ++ + I + ++II I+++ + I ++ + + I I I+++
Sbjct: 173 IGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVF 226
Score = 43.3 bits (103), Expect = 3e-04
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I + ++II ++ + I + ++II I+++ + I ++ + + I I I+++
Sbjct: 173 IGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVF 226
Score = 43.3 bits (103), Expect = 3e-04
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I + ++II ++ + I + ++II I+++ + I ++ + + I I I+++
Sbjct: 173 IGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVF 226
Score = 43.3 bits (103), Expect = 3e-04
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I + ++II ++ + I + ++II I+++ + I ++ + + I I I+++
Sbjct: 173 IGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVF 226
Score = 43.3 bits (103), Expect = 3e-04
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I + ++II ++ + I + ++II I+++ + I ++ + + I I I+++
Sbjct: 173 IGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVF 226
Score = 43.3 bits (103), Expect = 3e-04
Identities = 10/55 (18%), Positives = 30/55 (54%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ ++II ++ + I + ++II I+++ + I ++ + + I I I+++
Sbjct: 172 PIGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVF 226
Score = 42.6 bits (101), Expect = 5e-04
Identities = 12/62 (19%), Positives = 32/62 (51%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I + ++II ++ + I + ++II I+++ + I ++ + + I I ++ +
Sbjct: 173 IGLPLLIIGLLYLWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVFGGVLLT 232
Query: 161 KE 162
KE
Sbjct: 233 KE 234
>gnl|CDD|216801 pfam01943, Polysacc_synt, Polysaccharide biosynthesis protein.
Members of this family are integral membrane proteins.
Many members of the family are implicated in production
of polysaccharide. The family includes RfbX part of the
O antigen biosynthesis operon. The family includes SpoVB
from Bacillus subtilis, which is involved in spore
cortex biosynthesis.
Length = 272
Score = 43.8 bits (104), Expect = 2e-04
Identities = 25/133 (18%), Positives = 58/133 (43%), Gaps = 40/133 (30%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIII-------- 113
K SKYI +++ +++ +I ++I++I +I++I+ + I+++ +
Sbjct: 72 KSSKYISNVLLGKLLLSLIFLLILLIAAFLGLPDLAVILLILALAILLLPGVSQFFSWLF 131
Query: 114 -------IIIIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIDL 151
I I +II + +I++ I + + +I II + ++
Sbjct: 132 QGLEKMKYIAISMIIEKLGSLILVFIAVFLGLDLLAAVLILLIASLIGGIIALAVLRKKF 191
Query: 152 IFDFTFMYLKEFR 164
+ F F LK F+
Sbjct: 192 LPRFVFFSLKLFK 204
Score = 33.0 bits (76), Expect = 0.41
Identities = 11/102 (10%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIII 123
+ K + +++ +I ++ + + + ++ + + I+ + +I + + +
Sbjct: 1 LLKNALVLLLAQLISKLLPFVTLPYLARVLGPEGFGLYSFALAIVGLFVIFADLGLNAAL 60
Query: 124 IIII--------IIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+ I I +++ +++ +I ++I LI F
Sbjct: 61 VREIARYRDDEKSSKYISNVLLGKLLLSLIFLLILLIAAFLG 102
Score = 31.5 bits (72), Expect = 1.4
Identities = 12/71 (16%), Positives = 34/71 (47%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ K I I +II + +I++ I + + + ++ ++I++I +I II + ++
Sbjct: 130 LFQGLEKMKYIAISMIIEKLGSLILVFIAVFLGLDLLAAVLILLIASLIGGIIALAVLRK 189
Query: 129 IIIIIIIIIII 139
+ + +
Sbjct: 190 KFLPRFVFFSL 200
>gnl|CDD|224671 COG1757, NhaC, Na+/H+ antiporter [Energy production and
conversion].
Length = 485
Score = 44.2 bits (105), Expect = 2e-04
Identities = 17/101 (16%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------- 126
++ + I+ +I+ + I +++ +I+ + + + +II II+ + I
Sbjct: 9 VPPLLALKPAILTKAVILSLGIGVLVGGLILAFLNLPAHVALIIAIIVALFIARGLGFNY 68
Query: 127 --IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
III+I + ++ + ++I++ I I + + V
Sbjct: 69 KDIIILIFLGLLGALTALLILLGIGAAIAAWAASGIVPALV 109
Score = 37.7 bits (88), Expect = 0.018
Identities = 11/112 (9%), Positives = 42/112 (37%), Gaps = 18/112 (16%)
Query: 70 VRKRSKYIIIIIIIIIIIIII------------------IIIIIIIIIIIIIIIIIIIII 111
++ I I+ +I+ + I+ + +I I+++ +
Sbjct: 200 IKSNFYTTIPAFILALIVYFFLGFGSMLKAENRARTVEGLESILKVSFLINPILLLPYVT 259
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
++++ + + +++ I +II ++ + I+ ++ ++E
Sbjct: 260 VLVLALTGVPAFPVLLAGINTAVIISLLYGGFSFLDAINALYLGFTTSVEEV 311
Score = 35.7 bits (83), Expect = 0.083
Identities = 7/67 (10%), Positives = 30/67 (44%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I I+++ + ++++ + + +++ I +II ++ + I + + +
Sbjct: 249 INPILLLPYVTVLVLALTGVPAFPVLLAGINTAVIISLLYGGFSFLDAINALYLGFTTSV 308
Query: 146 IIIIDLI 152
++ L+
Sbjct: 309 EEVLKLL 315
Score = 31.9 bits (73), Expect = 1.3
Identities = 13/70 (18%), Positives = 28/70 (40%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
Y III+I + ++ + ++I++ I I I+ ++ + +I I
Sbjct: 67 NYKDIIILIFLGLLGALTALLILLGIGAAIAAWAASGIVPALVYYGLKLISPSIFFFDDF 126
Query: 135 IIIIIIIIII 144
I I+
Sbjct: 127 FITAIVSTAT 136
Score = 31.5 bits (72), Expect = 1.6
Identities = 14/82 (17%), Positives = 33/82 (40%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+V F+ + + III+I + ++ + ++I++ I I I+ ++ +
Sbjct: 55 IVALFIARGLGFNYKDIIILIFLGLLGALTALLILLGIGAAIAAWAASGIVPALVYYGLK 114
Query: 125 IIIIIIIIIIIIIIIIIIIIII 146
+I I I I+
Sbjct: 115 LISPSIFFFDDFFITAIVSTAT 136
>gnl|CDD|234471 TIGR04104, cxxc_20_cxxc, cxxc_20_cxxc protein. This small,
uncommon, poorly conserved protein is found primarily in
the Firmicutes. It features are pair of CxxC motifs
separated by about 20 amino acids, followed by a highly
hydrophobic region of about 45 amino acids. It has no
conserved gene neighborhood, and its function is
unknown.
Length = 94
Score = 40.8 bits (96), Expect = 2e-04
Identities = 15/71 (21%), Positives = 38/71 (53%)
Query: 50 EKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 109
E + + L KC C + + ++++ I +++I+ + I + I+II+I
Sbjct: 14 ELLKSLFSLYRPIKCPNCGTKQYLTAKSRKKSVLLVFIPLLLILFLSNIFGLPFILIILI 73
Query: 110 IIIIIIIIIII 120
II++++I+++
Sbjct: 74 YIILLLLIVLL 84
Score = 37.7 bits (88), Expect = 0.002
Identities = 12/49 (24%), Positives = 31/49 (63%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
++++ I +++I+ + I + I+II+I II++++I+++ FT
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLLTPFFVKFT 92
Score = 37.3 bits (87), Expect = 0.003
Identities = 12/51 (23%), Positives = 31/51 (60%)
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
++++ I +++I+ + I + I+II+I II++++I L+ F + +
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLLTPFFVKFTDK 94
Score = 36.2 bits (84), Expect = 0.007
Identities = 11/59 (18%), Positives = 32/59 (54%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+ C + ++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 26 IKCPNCGTKQYLTAKSRKKSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
++++ I +++I+ + I + I+II+I II++++I+++
Sbjct: 44 KSVLLVFIPLLLILFLSNIFGLPFILIILIYIILLLLIVLL 84
>gnl|CDD|219524 pfam07698, 7TM-7TMR_HD, 7TM receptor with intracellular HD
hydrolase. These bacterial 7TM receptor proteins have
an intracellular pfam01966. This entry corresponds to
the 7 helix transmembrane domain. These proteins also
contain an N-terminal extracellular domain.
Length = 189
Score = 42.5 bits (101), Expect = 2e-04
Identities = 10/79 (12%), Positives = 49/79 (62%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+RKR+K ++++ +I+I+ +++ +I +I I ++ + +++ I++ + +++ +++
Sbjct: 29 LRKRNKKLLLLSLILILSLLLAKLISLISIPYLVPLAAAPMLLAILLGSRLALVVSVLLA 88
Query: 130 IIIIIIIIIIIIIIIIIII 148
+++ ++ + ++ ++
Sbjct: 89 LLLGLMFGNNLEFLLYALL 107
Score = 39.8 bits (94), Expect = 0.002
Identities = 8/100 (8%), Positives = 52/100 (52%), Gaps = 15/100 (15%)
Query: 76 YIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
+++++++ ++++ ++++ +I+I+ +++ +I +I I ++ +
Sbjct: 7 LFLLVLLLLGVLLLYLRRFRPELRKRNKKLLLLSLILILSLLLAKLISLISIPYLVPLAA 66
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+++ I++ + +++ +++ +++ ++ +F L
Sbjct: 67 APMLLAILLGSRLALVVSVLLALLLGLMFGNNLEFLLYAL 106
Score = 39.8 bits (94), Expect = 0.002
Identities = 8/81 (9%), Positives = 46/81 (56%)
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
E ++ K +++ +I+I+ +++ +I +I I ++ + +++ I++ + +++ ++
Sbjct: 27 PELRKRNKKLLLLSLILILSLLLAKLISLISIPYLVPLAAAPMLLAILLGSRLALVVSVL 86
Query: 127 IIIIIIIIIIIIIIIIIIIII 147
+ +++ ++ + ++ ++
Sbjct: 87 LALLLGLMFGNNLEFLLYALL 107
>gnl|CDD|222017 pfam13273, DUF4064, Protein of unknown function (DUF4064).
Length = 96
Score = 40.3 bits (95), Expect = 2e-04
Identities = 15/75 (20%), Positives = 34/75 (45%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
KR+ ++ +I I+ I+ ++I I+ ++ I+ + + + I
Sbjct: 1 KRTAEFVLGLIGGILGILFGFFALLIGIMGTAEFKKNEQNSMVETILDALSTLGTGLGIG 60
Query: 132 IIIIIIIIIIIIIII 146
II+ I+ II I++
Sbjct: 61 AIILSILGIIGSILV 75
Score = 39.2 bits (92), Expect = 6e-04
Identities = 13/70 (18%), Positives = 31/70 (44%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
++ +I I+ I+ ++I I+ ++ I+ + + + I II+
Sbjct: 6 FVLGLIGGILGILFGFFALLIGIMGTAEFKKNEQNSMVETILDALSTLGTGLGIGAIILS 65
Query: 138 IIIIIIIIII 147
I+ II I++
Sbjct: 66 ILGIIGSILV 75
Score = 39.2 bits (92), Expect = 6e-04
Identities = 13/70 (18%), Positives = 31/70 (44%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++ +I I+ I+ ++I I+ ++ I+ + + + I II+
Sbjct: 6 FVLGLIGGILGILFGFFALLIGIMGTAEFKKNEQNSMVETILDALSTLGTGLGIGAIILS 65
Query: 139 IIIIIIIIII 148
I+ II I++
Sbjct: 66 ILGIIGSILV 75
Score = 39.2 bits (92), Expect = 6e-04
Identities = 13/70 (18%), Positives = 31/70 (44%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
++ +I I+ I+ ++I I+ ++ I+ + + + I II+
Sbjct: 6 FVLGLIGGILGILFGFFALLIGIMGTAEFKKNEQNSMVETILDALSTLGTGLGIGAIILS 65
Query: 140 IIIIIIIIII 149
I+ II I++
Sbjct: 66 ILGIIGSILV 75
Score = 33.8 bits (78), Expect = 0.045
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 27/91 (29%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIII-------------------IIIIIIIIIIIIIIIII 130
++ +I I+ I+ ++I I+ + + + I II+
Sbjct: 6 FVLGLIGGILGILFGFFALLIGIMGTAEFKKNEQNSMVETILDALSTLGTGLGIGAIILS 65
Query: 131 IIIIIIIIII--------IIIIIIIIIDLIF 153
I+ II I++ I+ II I+ L+
Sbjct: 66 ILGIIGSILVKKKPKLSGILFIIAAILGLLG 96
Score = 32.2 bits (74), Expect = 0.17
Identities = 11/65 (16%), Positives = 28/65 (43%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
++ +I I+ I+ ++I I+ ++ I+ + + + I II+
Sbjct: 6 FVLGLIGGILGILFGFFALLIGIMGTAEFKKNEQNSMVETILDALSTLGTGLGIGAIILS 65
Query: 148 IIDLI 152
I+ +I
Sbjct: 66 ILGII 70
>gnl|CDD|216211 pfam00953, Glycos_transf_4, Glycosyl transferase family 4.
Length = 158
Score = 41.8 bits (99), Expect = 3e-04
Identities = 8/96 (8%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------- 123
+ + ++ + +++I + + + + + + + +++ I++ + I+ +I
Sbjct: 26 KIRLLLQALAALLLIYLGLGLTSLGLPFGGGLELGLVLSILLTLFAIVGVINAVNFMDGL 85
Query: 124 ------IIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ +I + + I+ ++ I + ++ + L+
Sbjct: 86 DGLAGGVALIAALALAILALLAGDIDLALLSLALLG 121
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 43.3 bits (103), Expect = 3e-04
Identities = 10/87 (11%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 76 YIIIIIIIIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIIIIIIIIIII 123
++ +++I++ + + ++ + I +II I+ I II + ++
Sbjct: 80 FLNLLLIVLQLTAGTMFLMWLGELITKYGIGNGISLIIFAGIVASIPWAIINLFSLLSSA 139
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIID 150
++ I+ ++++++ + +I++++ +
Sbjct: 140 GGLLSILYLLLLLLATLAVILLVVYLQ 166
Score = 38.6 bits (91), Expect = 0.008
Identities = 12/94 (12%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIIIIII 119
S I++ + + +++I++ + + ++ I +II I+ I II
Sbjct: 71 SNGIVLGVGFLNLLLIVLQLTAGTMFLMWLGELITKYGIGNGISLIIFAGIVASIPWAII 130
Query: 120 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ ++ ++ I+ ++++++ + +I+ +++
Sbjct: 131 NLFSLLSSAGGLLSILYLLLLLLATLAVILLVVY 164
Score = 38.6 bits (91), Expect = 0.008
Identities = 15/103 (14%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIIIII 123
++ + + +++I++ + + ++ + I +II I+ I II +
Sbjct: 74 IVLGVGFLNLLLIVLQLTAGTMFLMWLGELITKYGIGNGISLIIFAGIVASIPWAIINLF 133
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVE 166
++ ++ I+ ++++++ + +I L+ YL+E R
Sbjct: 134 SLLSSAGGLLSILYLLLLLLATLAVILLVV-----YLQEARRR 171
Score = 33.3 bits (77), Expect = 0.42
Identities = 15/97 (15%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
Query: 73 RSKYIIIIIIIIIIIIII--IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
R K + +++ +I I I++ + I++ + + +++I++ + + +
Sbjct: 38 RKKIQQYTRYLTLVLALIQAIGIVLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFL 97
Query: 131 I--------------IIIIIIIIIIIIIIIIIIDLIF 153
+ I +II I+ I II+L
Sbjct: 98 MWLGELITKYGIGNGISLIIFAGIVASIPWAIINLFS 134
Score = 29.4 bits (67), Expect = 7.1
Identities = 15/123 (12%), Positives = 40/123 (32%), Gaps = 32/123 (26%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIII------III--------------------- 101
I+ ++++++ + +I++++ + I I
Sbjct: 136 LSSAGGLLSILYLLLLLLATLAVILLVVYLQEARRRIPIQYAKRVVGGGRGQSSYLPIKL 195
Query: 102 -----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
I II ++ I + + + + + I + I+ I LI F+
Sbjct: 196 NYAGVIPIIFASSLLANPQTIAQFLGSSFPLWPVSGLAYYLPIGSPVYILFYIVLIIFFS 255
Query: 157 FMY 159
+ Y
Sbjct: 256 YFY 258
Score = 29.0 bits (66), Expect = 7.7
Identities = 2/35 (5%), Positives = 20/35 (57%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 109
++ ++ I+ ++++++ + +I++++ +
Sbjct: 131 NLFSLLSSAGGLLSILYLLLLLLATLAVILLVVYL 165
Score = 29.0 bits (66), Expect = 8.1
Identities = 3/39 (7%), Positives = 22/39 (56%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 112
I + ++ ++ I+ ++++++ + +I++++ +
Sbjct: 127 WAIINLFSLLSSAGGLLSILYLLLLLLATLAVILLVVYL 165
>gnl|CDD|223548 COG0472, Rfe, UDP-N-acetylmuramyl pentapeptide
phosphotransferase/UDP-N- acetylglucosamine-1-phosphate
transferase [Cell envelope biogenesis, outer membrane].
Length = 319
Score = 43.0 bits (102), Expect = 3e-04
Identities = 13/114 (11%), Positives = 43/114 (37%), Gaps = 19/114 (16%)
Query: 66 VCEFVRKRSKY-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--- 115
+ E K K + I++ I++ ++ ++ + ++++ ++ +I +
Sbjct: 35 IPEDGPKSHKKGTPTMGGLAILLSILLASLLAANLLTNPYVWLVLLGLLGFGLIGFLDDR 94
Query: 116 ---------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+I + +++II + + I + I + I + + F
Sbjct: 95 LKLSPKIRGLIQKLKALLLIIALGELPIKFLDIPLGIPFFKLPGPLLFILFAVF 148
Score = 41.1 bits (97), Expect = 0.001
Identities = 12/96 (12%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ + + +I + +++II + + I + I + I + ++ I+ + I+
Sbjct: 97 LSPKIRGLIQKLKALLLIIALGELPIKFLDIPLGIPFFKLPGPLLFILFAVFAIVGASNA 156
Query: 130 IIII-----IIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ + + + I ++ + +I L+ + L
Sbjct: 157 VNLTDGLDGLAAGLSAIALLALALIALLQGLGELAL 192
Score = 39.9 bits (94), Expect = 0.003
Identities = 10/81 (12%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 76 YIIIIIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
Y+ ++++ ++ +I + +I + +++II + + I + I + I
Sbjct: 74 YVWLVLLGLLGFGLIGFLDDRLKLSPKIRGLIQKLKALLLIIALGELPIKFLDIPLGIPF 133
Query: 124 IIIIIIIIIIIIIIIIIIIII 144
+ ++ I+ + I+
Sbjct: 134 FKLPGPLLFILFAVFAIVGAS 154
Score = 38.0 bits (89), Expect = 0.015
Identities = 9/95 (9%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 60 TATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIII 113
+ + +++++ ++ +I + + + +I + +++II +
Sbjct: 60 LLASLLAANLLTNPYVWLVLLGLLGFGLIGFLDDRLKLSPKIRGLIQKLKALLLIIALGE 119
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ I + I + I + ++ I+ + I+
Sbjct: 120 LPIKFLDIPLGIPFFKLPGPLLFILFAVFAIVGAS 154
Score = 37.2 bits (87), Expect = 0.020
Identities = 10/83 (12%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 76 YIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
++ ++ +I + + + +I + +++II + + I + I + I +
Sbjct: 78 VLLGLLGFGLIGFLDDRLKLSPKIRGLIQKLKALLLIIALGELPIKFLDIPLGIPFFKLP 137
Query: 130 IIIIIIIIIIIIIIIIIIIIDLI 152
++ I+ + I+ ++L
Sbjct: 138 GPLLFILFAVFAIVGASNAVNLT 160
Score = 31.5 bits (72), Expect = 1.4
Identities = 15/124 (12%), Positives = 45/124 (36%), Gaps = 43/124 (34%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIII----------------------------IIIIIIII 106
Y+ +II +I +I+ I+I + I++ I+
Sbjct: 1 MYLTFRAALIISFVISLILTPILIKFLRKLGLGDIPEDGPKSHKKGTPTMGGLAILLSIL 60
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIDL 151
+ ++ ++ + ++++ ++ +I +I + +++II + +L
Sbjct: 61 LASLLAANLLTNPYVWLVLLGLLGFGLIGFLDDRLKLSPKIRGLIQKLKALLLIIALGEL 120
Query: 152 IFDF 155
F
Sbjct: 121 PIKF 124
>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane
protein. Models TIGR03110, TIGR03111, and TIGR03112
describe a three-gene system found in several
Gram-positive bacteria, where TIGR03110 (XrtG) is
distantly related to a putative transpeptidase,
exosortase (TIGR02602). This model describes a small
clade that correlates by both gene clustering and
phyletic pattern, although imperfectly, to the three
gene system. Both this narrow clade, and the larger set
of full-length homologous integral membrane proteins,
have an especially well-conserved region near the
C-terminus with an invariant tyrosine. The function is
unknown.
Length = 483
Score = 43.4 bits (103), Expect = 3e-04
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
II I++ I I + + + I +I++++I+II +I+III + ++
Sbjct: 2 NIIFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFLM 61
Query: 133 IIIIIIIIIIIIIIIIIDLIFDFTFM 158
+ II+I I+++I+ LI
Sbjct: 62 RHKGVTIIVIFILLLILQLILVTALH 87
Score = 41.1 bits (97), Expect = 0.002
Identities = 18/91 (19%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 76 YIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+I++ I I + + I++++I+II +I+III + ++
Sbjct: 5 FILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFLMRHK 64
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLI--FDFT 156
+ II+I I+++I+ +I++ + + +D
Sbjct: 65 GVTIIVIFILLLILQLILVTALHPLIGWDAG 95
Score = 31.9 bits (73), Expect = 1.3
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------- 140
I II I++ I I + + + I +I++++I+II +I+III
Sbjct: 1 INIIFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFL 60
Query: 141 -----IIIIIIIIIDLIFDFTFM 158
+ II+I I+ LI +
Sbjct: 61 MRHKGVTIIVIFILLLILQLILV 83
Score = 31.9 bits (73), Expect = 1.3
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
I II I++ I I + + + I +I++++I+II +I+II + K+
Sbjct: 1 INIIFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILII--------IYFWKK 52
Query: 163 FRVEQCPLFLQHKCT 177
+ L T
Sbjct: 53 VKKRYRFLMRHKGVT 67
Score = 31.5 bits (72), Expect = 1.6
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
I II I++ I I + + + I +I++++I+II +I+III + + F
Sbjct: 1 INIIFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRF- 59
Query: 157 FMYLKE 162
M K
Sbjct: 60 LMRHKG 65
Score = 30.7 bits (70), Expect = 2.8
Identities = 14/82 (17%), Positives = 38/82 (46%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+ V + + I + I++ +++ I I II +I I I++ + +++
Sbjct: 203 LFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAIIFVIAIFIVLFLQLLLENQKKK 262
Query: 125 IIIIIIIIIIIIIIIIIIIIII 146
I+ ++++I ++ I I+
Sbjct: 263 ILKFTLVVLIFLLSFGITYSIL 284
Score = 29.9 bits (68), Expect = 4.9
Identities = 13/70 (18%), Positives = 35/70 (50%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I + I++ +++ I I II +I I I++ + +++ I+ ++++I ++
Sbjct: 219 IALSILLGVLLAIAYFIKPSAIIFVIAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSFG 278
Query: 148 IIDLIFDFTF 157
I I ++
Sbjct: 279 ITYSILNYAI 288
Score = 29.6 bits (67), Expect = 6.0
Identities = 19/118 (16%), Positives = 50/118 (42%), Gaps = 26/118 (22%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIII--------I 108
V + K+ ++ + + ++++ + I+I + + + + +I I
Sbjct: 160 VKKVFNKKKAFVALYLFVLLLALSPYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKI 219
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIDLIFDFTF 157
+ I++ +++ I I II +I I I++ + I+ ++ LIF +F
Sbjct: 220 ALSILLGVLLAIAYFIKPSAIIFVIAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSF 277
Score = 29.6 bits (67), Expect = 7.1
Identities = 13/70 (18%), Positives = 35/70 (50%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I + I++ +++ I I II +I I I++ + +++ I+ ++++I ++
Sbjct: 219 IALSILLGVLLAIAYFIKPSAIIFVIAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSFG 278
Query: 144 IIIIIIDLIF 153
I I++
Sbjct: 279 ITYSILNYAI 288
>gnl|CDD|146748 pfam04276, DUF443, Protein of unknown function (DUF443). Family of
uncharacterized proteins.
Length = 197
Score = 41.8 bits (99), Expect = 3e-04
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 27/106 (25%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIII------------------IIII-----IIIIIII 108
+S+ +I III II+I+ ++I+ + I I + I+
Sbjct: 84 IQSEKLINIIICIIVILGVLILRLYINKKLKLKIYNRNKNNKEKIWLRPSFKNFFFILFA 143
Query: 109 IIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIID 150
I I+ + I I III I II + + +I ++ IID
Sbjct: 144 YIFFGGFSILALSGFITIEVQNIIIFIGWIIFLFLFFLINMLSIID 189
Score = 41.8 bits (99), Expect = 4e-04
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 21/110 (19%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------------IIIIIII 112
+R + Y I +I III II+I+ ++I+ + I I +
Sbjct: 75 LRPLTDYFNIQSEKLINIIICIIVILGVLILRLYINKKLKLKIYNRNKNNKEKIWLRPSF 134
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIDLIFDFTFM 158
I+ I I+ + I I III I II +F M
Sbjct: 135 KNFFFILFAYIFFGGFSILALSGFITIEVQNIIIFIGWIIFLFLFFLINM 184
Score = 40.7 bits (96), Expect = 0.001
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 27/104 (25%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIII------------------IIII-----IIIIIIIIII 110
K I III II+I+ ++I+ + I I + I+ I
Sbjct: 87 EKLINIIICIIVILGVLILRLYINKKLKLKIYNRNKNNKEKIWLRPSFKNFFFILFAYIF 146
Query: 111 IIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIID 150
I+ + I I III I II + + +I ++ II
Sbjct: 147 FGGFSILALSGFITIEVQNIIIFIGWIIFLFLFFLINMLSIIDG 190
Score = 33.7 bits (78), Expect = 0.20
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
++R K I+ I I+ + I I + III I II + + +I ++ II
Sbjct: 129 WLRPSFKNFFFILFAYIFFGGFSILALSGFITIEVQNIIIFIGWIIFLFLFFLINMLSII 188
Query: 129 IIIIIIII 136
+ I
Sbjct: 189 DGKTTVKI 196
Score = 31.8 bits (73), Expect = 0.75
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
K +K + +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 53 KPNKNNSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 30.3 bits (69), Expect = 2.5
Identities = 10/53 (18%), Positives = 25/53 (47%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+ +++ ++ + I +I III II+I+ ++I+ + I+
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYIN 110
Score = 29.9 bits (68), Expect = 3.4
Identities = 11/59 (18%), Positives = 26/59 (44%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
V+ + +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 51 IVKPNKNNSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ +++ ++ + I +I III II+I+ ++I+ + I
Sbjct: 58 NSFGWPVAGGGVLLGNLLRPLTDYFNIQSEKLINIIICIIVILGVLILRLYI 109
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 43.2 bits (102), Expect = 4e-04
Identities = 12/100 (12%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIII 123
+R+ KY+ ++++ I+++++ ++ +++ ++I II + ++ ++++++++ +
Sbjct: 4 LRRLLKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLAL 63
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+ ++ + + + I+ + DL + L F
Sbjct: 64 LGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFF 103
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 41.3 bits (97), Expect = 0.002
Identities = 4/51 (7%), Positives = 33/51 (64%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Score = 38.9 bits (91), Expect = 0.009
Identities = 5/52 (9%), Positives = 33/52 (63%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ +++ L+
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173
Score = 36.6 bits (85), Expect = 0.051
Identities = 5/62 (8%), Positives = 32/62 (51%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
+ ++ +++++ I+++I ++++ + + +I+++I+ ++ L+ ++
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSR 181
Query: 166 EQ 167
Sbjct: 182 RV 183
Score = 35.9 bits (83), Expect = 0.071
Identities = 5/78 (6%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIII 142
++ ++ + ++++ I+++++ ++ +++ ++I II + ++ ++++++++
Sbjct: 2 SLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLL 61
Query: 143 IIIIIIIDLIFDFTFMYL 160
++ ++ + + L
Sbjct: 62 ALLGGVLRALQSYLGSRL 79
>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane].
Length = 424
Score = 42.9 bits (101), Expect = 4e-04
Identities = 15/140 (10%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ +++ I+ ++ ++ + ++I +++ + ++ +I+++ + ++++++ ++
Sbjct: 181 LLFPALLLWILGSWLLGTLLAALALLIALLLTGSRSLAALLALILLLALFLVLLLLRRVL 240
Query: 136 IIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHF-MNQRR 194
++ ++ ++ +I+I L+ F L E + R W + +
Sbjct: 241 LLGLLAALLALILIALVGIELFEPL-ELLLA---RLGTDSSLTGRLDI---WEAALEAIK 293
Query: 195 RRPVRKRDGSFNYSPDTYCT 214
RP F Y +
Sbjct: 294 ERP------IFGYGYGAFWR 307
Score = 38.6 bits (90), Expect = 0.009
Identities = 6/80 (7%), Positives = 42/80 (52%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
S + ++ + ++I +++ + ++ +I+++ + ++++++ ++++
Sbjct: 183 FPALLLWILGSWLLGTLLAALALLIALLLTGSRSLAALLALILLLALFLVLLLLRRVLLL 242
Query: 124 IIIIIIIIIIIIIIIIIIII 143
++ ++ +I+I ++ I +
Sbjct: 243 GLLAALLALILIALVGIELF 262
Score = 37.5 bits (87), Expect = 0.024
Identities = 5/76 (6%), Positives = 44/76 (57%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ +++ ++ + ++I +++ + ++ +I+++ + ++++++ ++++ ++
Sbjct: 187 LLWILGSWLLGTLLAALALLIALLLTGSRSLAALLALILLLALFLVLLLLRRVLLLGLLA 246
Query: 129 IIIIIIIIIIIIIIII 144
++ +I+I ++ I +
Sbjct: 247 ALLALILIALVGIELF 262
Score = 34.4 bits (79), Expect = 0.21
Identities = 7/79 (8%), Positives = 48/79 (60%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
++I + + I ++ + I + + + I+I+ +++ +++++++ + + +++ +
Sbjct: 11 SFLIPKLGALWIAALVFLFISLAFLAGLGSTILILAALLLALLLLLLLFLPVAFKLLLSL 70
Query: 135 IIIIIIIIIIIIIIIDLIF 153
+ +++ + +++++++ L+F
Sbjct: 71 LNLLLFLRLLLLLLLWLLF 89
Score = 33.6 bits (77), Expect = 0.32
Identities = 8/83 (9%), Positives = 45/83 (54%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ +I + + I ++ + I + + + I+I+ +++ +++++++ + + +++
Sbjct: 10 LSFLIPKLGALWIAALVFLFISLAFLAGLGSTILILAALLLALLLLLLLFLPVAFKLLLS 69
Query: 138 IIIIIIIIIIIIDLIFDFTFMYL 160
++ +++ + +++ L+ F L
Sbjct: 70 LLNLLLFLRLLLLLLLWLLFSSL 92
Score = 33.6 bits (77), Expect = 0.38
Identities = 6/94 (6%), Positives = 42/94 (44%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
E + + + ++ + ++ ++ +++ I+ ++ ++ + ++I +++
Sbjct: 153 EELALANLWRVLGVYAFKNYAGSLMAAALLFPALLLWILGSWLLGTLLAALALLIALLLT 212
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
+ ++ +I+++ + ++++ L L
Sbjct: 213 GSRSLAALLALILLLALFLVLLLLRRVLLLGLLA 246
Score = 33.2 bits (76), Expect = 0.51
Identities = 8/82 (9%), Positives = 43/82 (52%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I+ + +I + + I ++ + I + + + I+I+ +++ +++++++ + + +
Sbjct: 7 ILALSFLIPKLGALWIAALVFLFISLAFLAGLGSTILILAALLLALLLLLLLFLPVAFKL 66
Query: 139 IIIIIIIIIIIDLIFDFTFMYL 160
++ ++ +++ + L+ L
Sbjct: 67 LLSLLNLLLFLRLLLLLLLWLL 88
Score = 29.4 bits (66), Expect = 8.4
Identities = 6/73 (8%), Positives = 37/73 (50%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ + I++ I+ +++++ ++++I+++ + + ++ ++ + II+ + + +
Sbjct: 334 LYLEILLETGILGLLLLLALLLVILLLFLKRTRKNALAALLGLLFLGIILFVGLFSEVES 393
Query: 148 IIDLIFDFTFMYL 160
+ I ++
Sbjct: 394 LFFAITSSFWVLF 406
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular
trafficking and secretion].
Length = 436
Score = 43.0 bits (102), Expect = 4e-04
Identities = 13/87 (14%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 76 YIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIIIIIIIIIIIIII 121
I ++II+ + + ++ I +II I+ + I II +
Sbjct: 150 GIFFYLLIILQLTAGTMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPT 209
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ + I+ +++++++ + II +++ +
Sbjct: 210 GALFLSILFLLLLVLLTLAIIFLVVYV 236
Score = 42.6 bits (101), Expect = 6e-04
Identities = 13/90 (14%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIIIIIIIIIII 119
I ++II+ + + ++ I +II I+ + I II
Sbjct: 147 GNGGIFFYLLIILQLTAGTMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGA 206
Query: 120 IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ + + I+ +++++++ + II +++ +
Sbjct: 207 LPTGALFLSILFLLLLVLLTLAIIFLVVYV 236
Score = 41.8 bits (99), Expect = 0.001
Identities = 15/103 (14%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIII 110
+V S + I ++II+ + + ++ I +II I
Sbjct: 133 VVLGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFLMWLGEQITKRGIGNGISLIIFAGI 192
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ + I II + + + I+ +++++++ + II +++
Sbjct: 193 VASLPSAIFGIIGALPTGALFLSILFLLLLVLLTLAIIFLVVY 235
Score = 38.4 bits (90), Expect = 0.013
Identities = 14/99 (14%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIIIIIIIII 126
+ I ++II+ + + ++ I +II I+ + I II
Sbjct: 145 DVGNGGIFFYLLIILQLTAGTMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGII 204
Query: 127 IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
+ + + I+ +++++++ + +IF ++ R+
Sbjct: 205 GALPTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRI 243
Score = 36.4 bits (85), Expect = 0.053
Identities = 15/98 (15%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIIIIIIIII 128
+ I ++II+ + + ++ I +II I+ + I II
Sbjct: 145 DVGNGGIFFYLLIILQLTAGTMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGII 204
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVE 166
+ + + I+ +++++++ L F +Y+++ R
Sbjct: 205 GALPTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRR 242
Score = 30.7 bits (70), Expect = 3.0
Identities = 3/32 (9%), Positives = 20/32 (62%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIII 99
+ + ++ I+ +++++++ + II +++ +
Sbjct: 205 GALPTGALFLSILFLLLLVLLTLAIIFLVVYV 236
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 43.1 bits (102), Expect = 4e-04
Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIII----IIIIIIII 121
Y II+I I + + I+ I+II ++ +++ ++ ++ I+
Sbjct: 165 SSLPYFIILIGSFFPIAFCLYLATKPSKKKILFILIIYLLYLLLSLLTGQRGPFVLNILF 224
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
I+ I+ I I + +I I + + L+ Y++
Sbjct: 225 ILWYYILRNYISWIGKKELFLIFISVPVLLVLLSFLSYIRG 265
Score = 36.1 bits (84), Expect = 0.058
Identities = 11/91 (12%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ II + ++ +++ +++I I + + + + + +I + + + +
Sbjct: 4 VLFIIGLFFNDLLFLLVALLLIWIANFVYALKKLKKRSLYFLFLITFFVFLFGRPFLDYL 63
Query: 136 II-------------IIIIIIIIIIIIDLIF 153
II +I++I+ L+F
Sbjct: 64 FGYNDSIFANDFYNEDIIFEALILLILSLLF 94
Score = 32.7 bits (75), Expect = 0.68
Identities = 9/75 (12%), Positives = 30/75 (40%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
++ II + ++ +++ +++I I + + + + + +I + + +
Sbjct: 3 FVLFIIGLFFNDLLFLLVALLLIWIANFVYALKKLKKRSLYFLFLITFFVFLFGRPFLDY 62
Query: 145 IIIIIDLIFDFTFMY 159
+ D IF F
Sbjct: 63 LFGYNDSIFANDFYN 77
Score = 31.9 bits (73), Expect = 1.2
Identities = 7/69 (10%), Positives = 29/69 (42%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
++ II + ++ +++ +++I I + + + + + +I + + +D
Sbjct: 3 FVLFIIGLFFNDLLFLLVALLLIWIANFVYALKKLKKRSLYFLFLITFFVFLFGRPFLDY 62
Query: 152 IFDFTFMYL 160
+F +
Sbjct: 63 LFGYNDSIF 71
Score = 31.1 bits (71), Expect = 2.0
Identities = 9/103 (8%), Positives = 37/103 (35%), Gaps = 15/103 (14%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------- 123
++++ +++I I + + + + + +I + + + +
Sbjct: 15 LLFLLVALLLIWIANFVYALKKLKKRSLYFLFLITFFVFLFGRPFLDYLFGYNDSIFAND 74
Query: 124 -----IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
II +I++I+ ++ + + I+ + L+
Sbjct: 75 FYNEDIIFEALILLILSLLFLFLGYILGRKKKRKKEKKKNQLE 117
Score = 31.1 bits (71), Expect = 2.2
Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 56/135 (41%)
Query: 74 SKYIIIIIIIIIIIIII----------------------------------IIIIIIIII 99
++ II +I++I+ ++ + +I+ I
Sbjct: 77 NEDIIFEALILLILSLLFLFLGYILGRKKKRKKEKKKNQLEYERLLKNLRKLSLILFYIT 136
Query: 100 IIIIIIIIIIIIIII------------------IIIIIIIIIIIIIIIIII----IIIII 137
I +I + ++I+ II+I I + + I+
Sbjct: 137 FIFSLIYLYEKLLIVSSGGYLAYYQSFLSSLPYFIILIGSFFPIAFCLYLATKPSKKKIL 196
Query: 138 IIIIIIIIIIIIDLI 152
I+II ++ +++ L+
Sbjct: 197 FILIIYLLYLLLSLL 211
Score = 30.0 bits (68), Expect = 4.8
Identities = 8/65 (12%), Positives = 27/65 (41%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
++ II + ++ +++ +++I I + + + + + +I +F F +L
Sbjct: 3 FVLFIIGLFFNDLLFLLVALLLIWIANFVYALKKLKKRSLYFLFLITFFVFLFGRPFLDY 62
Query: 163 FRVEQ 167
Sbjct: 63 LFGYN 67
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense
mechanisms].
Length = 455
Score = 43.0 bits (102), Expect = 5e-04
Identities = 8/100 (8%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIII 125
RK++K ++ +++ +++ +++ I+++ ++ ++ ++ + + II++
Sbjct: 89 RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPF 148
Query: 126 IIIIIIIIIII------IIIIIIIIIIIIIDLIFDFTFMY 159
++ ++ I+ + I+++ +++++ ++ ++
Sbjct: 149 ALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIF 188
Score = 41.1 bits (97), Expect = 0.002
Identities = 13/123 (10%), Positives = 45/123 (36%), Gaps = 32/123 (26%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIIIIIIIII 115
R+ ++ + + ++I ++I +++++ +I + +I+++I + I
Sbjct: 316 ARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGI 375
Query: 116 ------------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
II ++ + + ++ + + + I + LI
Sbjct: 376 QFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAIL 435
Query: 158 MYL 160
+ L
Sbjct: 436 LLL 438
Score = 32.2 bits (74), Expect = 0.95
Identities = 8/80 (10%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 93 IIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I +II I I + +++ ++ +++ +++ +++ I+++
Sbjct: 61 IFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEP 120
Query: 142 IIIIIIIIDLIFDFTFMYLK 161
++ ++ + + YL+
Sbjct: 121 LLRLLGAPAEVLELAAEYLR 140
>gnl|CDD|225965 COG3431, COG3431, Predicted membrane protein [Function unknown].
Length = 142
Score = 40.7 bits (96), Expect = 5e-04
Identities = 19/103 (18%), Positives = 54/103 (52%), Gaps = 18/103 (17%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------- 112
+ + +R K ++ ++I II I++ ++II + II++I + + ++
Sbjct: 3 IMDALRLFEKLVVKVLIFIIDILLFVLIIGLFIIMLIELFTMFFSLLNPLDFYLVVEDVL 62
Query: 113 -IIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIID 150
++I++ + ++I + I + +++ II ++ II+++D
Sbjct: 63 FVLILLELFELLIDYLEEHRISLRLVVEAGIIAVLREIIVVLD 105
Score = 37.6 bits (88), Expect = 0.005
Identities = 19/128 (14%), Positives = 55/128 (42%), Gaps = 38/128 (29%)
Query: 68 EFVRKR-SKYIIIIIIIIIIIIIIIIIIIIIIIIIIII------------------IIII 108
K K +I II I++ ++II + II++I + + ++I+
Sbjct: 8 RLFEKLVVKVLIFIIDILLFVLIIGLFIIMLIELFTMFFSLLNPLDFYLVVEDVLFVLIL 67
Query: 109 IIIIIIIII--------IIIIIIIIIIIII--IIIII---------IIIIIIIIIIIIII 149
+ + ++I + +++ II ++ II+++ +I + ++++ + +I
Sbjct: 68 LELFELLIDYLEEHRISLRLVVEAGIIAVLREIIVVLDIGKFEILSLIALALVLLALGVI 127
Query: 150 DLIFDFTF 157
++
Sbjct: 128 RVLLSIKE 135
Score = 33.7 bits (78), Expect = 0.13
Identities = 15/73 (20%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIDLI 152
+++ ++I II I++ ++II + II++I + + ++ ++ ++I+++L
Sbjct: 12 KLVVKVLIFIIDILLFVLIIGLFIIMLIELFTMFFSLLNPLDFYLVVEDVLFVLILLELF 71
Query: 153 FDFTFMYLKEFRV 165
YL+E R+
Sbjct: 72 ELLI-DYLEEHRI 83
>gnl|CDD|204766 pfam11877, DUF3397, Protein of unknown function (DUF3397). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 114 to 128 amino acids in
length.
Length = 116
Score = 39.9 bits (94), Expect = 5e-04
Identities = 11/93 (11%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
++ I ++++ +++ I++ + + + + +II + I ++ ++
Sbjct: 1 LLTAAIAFLVLVPLLLFILVKFFRLKRRGWAFLAAVDLATPFLIIAVHFISKVLFTHSLL 60
Query: 133 IIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
+++ + ++ III + Y K F++
Sbjct: 61 PYLLLFLSLLAIIITLFQARKKKEIYYRKFFKL 93
Score = 28.4 bits (64), Expect = 4.6
Identities = 7/53 (13%), Positives = 26/53 (49%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
+++R + + + +II + I ++ ++ +++ + ++ III +
Sbjct: 25 LKRRGWAFLAAVDLATPFLIIAVHFISKVLFTHSLLPYLLLFLSLLAIIITLF 77
>gnl|CDD|222537 pfam14093, DUF4271, Domain of unknown function (DUF4271). This
family of integral membrane proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
221 and 326 amino acids in length.
Length = 207
Score = 41.4 bits (98), Expect = 6e-04
Identities = 21/138 (15%), Positives = 57/138 (41%), Gaps = 32/138 (23%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----- 109
L+LQT + ++ R + + + +I+ +I + + I++ I+ +I
Sbjct: 54 FLFLQTCLLLSLFIYLYLRDFGLELFFSVQLIVFGLIFGGVFLFILLKYILYRLIGWLFF 113
Query: 110 --------------------IIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIII 144
+++ ++++++ I +II++II+++ I+++
Sbjct: 114 DKKKIDQWLFSKLSLSSYFGLLLFPLVLLLVYFDSLSFYIAVIILLIILLLGKILLLYKY 173
Query: 145 IIIIIDLIFDFT--FMYL 160
I +F F +YL
Sbjct: 174 YKIFFRKLFSFLYFILYL 191
Score = 32.6 bits (75), Expect = 0.49
Identities = 7/62 (11%), Positives = 29/62 (46%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ + + +++ + I + + + + + +I+ +I + + I++ I+ +I +F
Sbjct: 53 LFLFLQTCLLLSLFIYLYLRDFGLELFFSVQLIVFGLIFGGVFLFILLKYILYRLIGWLF 112
Query: 154 DF 155
Sbjct: 113 FD 114
Score = 32.2 bits (74), Expect = 0.63
Identities = 16/140 (11%), Positives = 50/140 (35%), Gaps = 49/140 (35%)
Query: 69 FVRKRSKYIII----------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
++ R KY II + + + +++ + I + + + + + +I+ +I
Sbjct: 32 LLKFRDKYFIIETGKENRPFQLFLFLQTCLLLSLFIYLYLRDFGLELFFSVQLIVFGLIF 91
Query: 119 IIIIIIIII---------------------------------IIIIIIIIII------II 139
+ + I++ +++ +++++
Sbjct: 92 GGVFLFILLKYILYRLIGWLFFDKKKIDQWLFSKLSLSSYFGLLLFPLVLLLVYFDSLSF 151
Query: 140 IIIIIIIIIIDLIFDFTFMY 159
I +II++II L+ +Y
Sbjct: 152 YIAVIILLIILLLGKILLLY 171
>gnl|CDD|222420 pfam13858, DUF4199, Protein of unknown function (DUF4199). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 167 and 182 amino
acids in length.
Length = 162
Score = 40.7 bits (96), Expect = 7e-04
Identities = 16/93 (17%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------- 123
KY +I +I+I++ ++ ++ + + I + ++ +++++I I +I I
Sbjct: 1 KYGLIFGLILILLWLLSYLLGLHDLHIPTLPLLGLLLLVITIALIYYAIKRYRKKANGGF 60
Query: 124 ------IIIIIIIIIIIIIIIIIIIIIIIIIID 150
++I +I +I + I ID
Sbjct: 61 ISFGQAFKFGLLISLIAALISTVFQYIYFNFID 93
Score = 28.8 bits (65), Expect = 5.9
Identities = 9/57 (15%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
+I +I+I++ ++ ++ + + I ++ +++++I I +I + +K +R
Sbjct: 4 LIFGLILILLWLLSYLLGLHDLHIPTLPLLGLLLLVITIALI-------YYAIKRYR 53
>gnl|CDD|165276 PHA02972, PHA02972, hypothetical protein; Provisional.
Length = 109
Score = 39.5 bits (92), Expect = 7e-04
Identities = 32/86 (37%), Positives = 46/86 (53%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I+++ I + II I +I+ I II+ I II +I+I I I I+ + I I I I
Sbjct: 7 ILLMTSITLAIISSFIAVIMNNINIILAAIFIITLIVIHIRIAFNILFLYIFSCIFDINI 66
Query: 139 IIIIIIIIIIIDLIFDFTFMYLKEFR 164
IIII + II I F Y++E R
Sbjct: 67 IIIIFLGIIFIRKTGKFIINYIREVR 92
Score = 35.3 bits (81), Expect = 0.017
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S + II I +I+ I II+ I II +I+I I I I+ + I I I IIIII
Sbjct: 12 SITLAIISSFIAVIMNNINIILAAIFIITLIVIHIRIAFNILFLYIFSCIFDINIIIIIF 71
Query: 134 IIIIII 139
+ II I
Sbjct: 72 LGIIFI 77
Score = 34.1 bits (78), Expect = 0.042
Identities = 30/76 (39%), Positives = 40/76 (52%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I + II I +I+ I II+ I II +I+I I I I+ + I I I IIIII +
Sbjct: 13 ITLAIISSFIAVIMNNINIILAAIFIITLIVIHIRIAFNILFLYIFSCIFDINIIIIIFL 72
Query: 137 IIIIIIIIIIIIIDLI 152
II I II+ I
Sbjct: 73 GIIFIRKTGKFIINYI 88
Score = 29.1 bits (65), Expect = 3.0
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
IL + + T ++ F+ I II+ I II +I+I I I I+ + I I I I
Sbjct: 7 ILLMTSITLAIISSFIAVIMNNINIILAAIFIITLIVIHIRIAFNILFLYIFSCIFDINI 66
Query: 115 IIIIIIIIIII 125
IIII + II I
Sbjct: 67 IIIIFLGIIFI 77
Score = 27.6 bits (61), Expect = 9.2
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+I + I+++ I + II I +I+ I II+ I II +I+I I + F+ F+Y+
Sbjct: 1 MIDLPSILLMTSITLAIISSFIAVIMNNINIILAAIFIITLIVIHIRIAFNILFLYI 57
>gnl|CDD|224214 COG1295, Rbn, Ribonuclease BN family enzyme [Replication,
recombination, and repair].
Length = 303
Score = 41.9 bits (99), Expect = 7e-04
Identities = 6/72 (8%), Positives = 37/72 (51%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I ++ + + ++ ++ +++ ++ I + +++ + ++++I++ + +++
Sbjct: 137 FIRRRLLSLFWTLGTLLPLLFALLLSVVGPIALQALLLRFGLPFFDVLVLILLRLRLLVS 196
Query: 148 IIDLIFDFTFMY 159
++ L F +Y
Sbjct: 197 LLLLTLGFFLLY 208
Score = 31.9 bits (73), Expect = 1.1
Identities = 13/152 (8%), Positives = 54/152 (35%), Gaps = 59/152 (38%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------IIIIIIIIIII 116
F+R+R + + ++ ++ +++ ++ I + ++ +I++ + +++
Sbjct: 137 FIRRRLLSLFWTLGTLLPLLFALLLSVVGPIALQALLLRFGLPFFDVLVLILLRLRLLVS 196
Query: 117 IIIIIIIIIII-----------------------IIIII--------------------- 132
++++ + ++ I+ +
Sbjct: 197 LLLLTLGFFLLYRFLPNVRVLKWRDVLPGALLAAILFELGKYLFGYYLSNFANYSSTYGA 256
Query: 133 ---IIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
+II+++ + I +II++ + T K
Sbjct: 257 LGSVIILLLWLYISALIILLGAELNATLSEYK 288
>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system
inner membrane component. The alignments cover the most
conserved region of the proteins, which is thought to be
located in a cytoplasmic loop between two transmembrane
domains. The members of this family have a variable
number of transmembrane helices.
Length = 183
Score = 40.7 bits (96), Expect = 7e-04
Identities = 11/73 (15%), Positives = 34/73 (46%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
++ R R ++ +I ++ + ++ I++++I I+ I+ I+ II+ ++
Sbjct: 6 IIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAG 65
Query: 125 IIIIIIIIIIIII 137
+I + +
Sbjct: 66 YARLIRRAALRSL 78
Score = 40.0 bits (94), Expect = 0.001
Identities = 9/80 (11%), Positives = 36/80 (45%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
K I+ + I+ + + + +++ + + +++I I+ I ++
Sbjct: 99 KIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLA 158
Query: 135 IIIIIIIIIIIIIIIDLIFD 154
+I++++ +++ I+ + D
Sbjct: 159 AALILLLLNLLVDILQRLLD 178
Score = 39.6 bits (93), Expect = 0.002
Identities = 8/77 (10%), Positives = 35/77 (45%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
II+ + I+ + + + +++ + + +++I I+ I ++
Sbjct: 100 IILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAA 159
Query: 139 IIIIIIIIIIIDLIFDF 155
+I++++ +++D++
Sbjct: 160 ALILLLLNLLVDILQRL 176
Score = 38.0 bits (89), Expect = 0.006
Identities = 9/61 (14%), Positives = 30/61 (49%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +I + +
Sbjct: 19 LLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78
Query: 150 D 150
Sbjct: 79 P 79
Score = 38.0 bits (89), Expect = 0.007
Identities = 10/69 (14%), Positives = 34/69 (49%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+R + + ++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +
Sbjct: 10 LRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARL 69
Query: 131 IIIIIIIII 139
I + +
Sbjct: 70 IRRAALRSL 78
Score = 37.3 bits (87), Expect = 0.010
Identities = 9/60 (15%), Positives = 30/60 (50%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +I + +
Sbjct: 19 LLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78
Score = 36.9 bits (86), Expect = 0.014
Identities = 13/87 (14%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I II+ + I+ + + + +++ + + +++I I+ I
Sbjct: 96 IFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGP 155
Query: 139 IIIIIIIIIIIDLIFDFTFMYLKEFRV 165
++ +I+++++L+ D L + RV
Sbjct: 156 VLAAALILLLLNLLVDI-LQRLLDPRV 181
Score = 36.9 bits (86), Expect = 0.014
Identities = 10/69 (14%), Positives = 34/69 (49%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+R+ + ++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +
Sbjct: 10 LRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARL 69
Query: 130 IIIIIIIII 138
I + +
Sbjct: 70 IRRAALRSL 78
Score = 36.9 bits (86), Expect = 0.016
Identities = 9/60 (15%), Positives = 30/60 (50%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +I + +
Sbjct: 19 LLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78
Score = 36.9 bits (86), Expect = 0.016
Identities = 9/60 (15%), Positives = 30/60 (50%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +I + +
Sbjct: 19 LLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78
Score = 36.9 bits (86), Expect = 0.016
Identities = 9/60 (15%), Positives = 30/60 (50%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +I + +
Sbjct: 19 LLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78
Score = 36.9 bits (86), Expect = 0.016
Identities = 9/60 (15%), Positives = 30/60 (50%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +I + +
Sbjct: 19 LLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78
Score = 36.9 bits (86), Expect = 0.016
Identities = 9/60 (15%), Positives = 30/60 (50%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +I + +
Sbjct: 19 LLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78
Score = 36.9 bits (86), Expect = 0.016
Identities = 9/60 (15%), Positives = 30/60 (50%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +I + +
Sbjct: 19 LLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78
Score = 36.9 bits (86), Expect = 0.016
Identities = 9/60 (15%), Positives = 30/60 (50%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +I + +
Sbjct: 19 LLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78
Score = 36.9 bits (86), Expect = 0.016
Identities = 9/60 (15%), Positives = 30/60 (50%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +I + +
Sbjct: 19 LLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78
Score = 36.9 bits (86), Expect = 0.016
Identities = 9/60 (15%), Positives = 30/60 (50%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +I + +
Sbjct: 19 LLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78
Score = 36.9 bits (86), Expect = 0.016
Identities = 8/79 (10%), Positives = 35/79 (44%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ + II+ + I+ + + + +++ + + +++I I+ I
Sbjct: 94 WQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQ 153
Query: 131 IIIIIIIIIIIIIIIIIII 149
++ +I++++ +++ I
Sbjct: 154 GPVLAAALILLLLNLLVDI 172
Score = 30.7 bits (70), Expect = 1.6
Identities = 10/53 (18%), Positives = 28/53 (52%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ LI
Sbjct: 19 LLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIR 71
Score = 30.3 bits (69), Expect = 2.5
Identities = 8/54 (14%), Positives = 27/54 (50%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
++ +I ++ + ++ I++++I I+ I+ I+ II+ ++ +
Sbjct: 19 LLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRR 72
>gnl|CDD|150710 pfam10066, DUF2304, Uncharacterized conserved protein (DUF2304).
Members of this family of hypothetical archaeal proteins
have no known function.
Length = 115
Score = 39.5 bits (93), Expect = 8e-04
Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 76 YIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
I II I++++ I++II+ I + I ++ + I++++ + I I ++
Sbjct: 2 EPIQIIAIVVLVAAILVIIVRIRKSRLSISDLLFWLFFWIVVLLFALFPKISGRIANLLG 61
Query: 133 IIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
I + + + I ++ L+F K
Sbjct: 62 IGRGLDALFYLGIGLLFYLLFKLYLKIDK 90
Score = 30.3 bits (69), Expect = 1.3
Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 110 IIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
I II I++++ I++II+ I + I ++ + I++++ +F +
Sbjct: 2 EPIQIIAIVVLVAAILVIIVRIRKSRLSISDLLFWLFFWIVVLLFALFPKISGRIANL 59
Score = 29.1 bits (66), Expect = 2.5
Identities = 9/63 (14%), Positives = 27/63 (42%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
VR R + I ++ + I++++ + I I ++ I + + + I ++
Sbjct: 19 IIVRIRKSRLSISDLLFWLFFWIVVLLFALFPKISGRIANLLGIGRGLDALFYLGIGLLF 78
Query: 128 III 130
++
Sbjct: 79 YLL 81
>gnl|CDD|222964 PHA03042, PHA03042, CD47-like protein; Provisional.
Length = 286
Score = 41.6 bits (98), Expect = 8e-04
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------II 125
I I I +I+++ +I + I + I II+I + I I + II+ II
Sbjct: 150 AISIWITLIMLVGQYMIGLNTNYIFVKIQGIILIQVSIFSSIFLQIILYKKIKNSYLLII 209
Query: 126 IIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+II+ +I II I+II+ I + I+ + F+Y
Sbjct: 210 VIILKVISYIISFIVIILSFIGCYNSIYGYLFIY 243
Score = 38.2 bits (89), Expect = 0.012
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ YI + I II+I + I I + II+ I ++II+II+ +I II I+II+
Sbjct: 170 TNYIFVKIQGIILIQVSIFSSIFLQIILYKKIKNSYLLIIVIILKVISYIISFIVIILSF 229
Query: 134 I---------IIIIIIIIIIIIIIIDLIFDFTF 157
I + I ++ I I+ + L+ F
Sbjct: 230 IGCYNSIYGYLFIYKLLFINILELSSLVILFIL 262
Score = 35.5 bits (82), Expect = 0.073
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I +I+ ++ I III+ II + II + I I I +I+++ +I + I
Sbjct: 114 INVILSLLSIYIIILWGTIITLTFKINKLKKIIYLYAISIWITLIMLVGQYMIGLNTNYI 173
Query: 139 IIIIIIIIIIIDLIFDFTFM 158
+ I II+I IF F+
Sbjct: 174 FVKIQGIILIQVSIFSSIFL 193
Score = 33.2 bits (76), Expect = 0.38
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIII--IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
I +I+ ++ I III+ II + I + II + I I I +I+++ +I L ++
Sbjct: 114 INVILSLLSIYIIILWGTIITLTFKINKLKKIIYLYAISIWITLIMLVGQYMIGLNTNYI 173
Query: 157 FMYL 160
F+ +
Sbjct: 174 FVKI 177
Score = 32.0 bits (73), Expect = 0.91
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K S +II+II+ +I II I+II+ I I + I ++ I I+ + ++I+ I
Sbjct: 202 KNSYLLIIVIILKVISYIISFIVIILSFIGCYNSIYGYLFIYKLLFINILELSSLVILFI 261
Query: 132 I 132
+
Sbjct: 262 L 262
Score = 28.9 bits (65), Expect = 8.8
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K+ K ++II+II+ +I II I+II+ I I + I ++ I I+ + ++I
Sbjct: 199 KKIKNSYLLIIVIILKVISYIISFIVIILSFIGCYNSIYGYLFIYKLLFINILELSSLVI 258
Query: 132 IIII 135
+ I+
Sbjct: 259 LFIL 262
>gnl|CDD|224975 COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 320
Score = 41.8 bits (98), Expect = 8e-04
Identities = 10/93 (10%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
E + + + + + ++ ++ + + + ++ + + + + I I
Sbjct: 228 EALIRLAVRLGSDEVKRVVSLLTQALESGGSLADALRVLSMELSRETRLKLGEIRAGKIG 287
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+ I++ +I++II +++ ++I+ I+ + F
Sbjct: 288 VGILLPLILVIIPVLLFVVILPAILGIASSGGF 320
Score = 40.2 bits (94), Expect = 0.003
Identities = 8/81 (9%), Positives = 35/81 (43%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ + ++ ++ + + + ++ + + + + I I + I++ +I+
Sbjct: 237 LGSDEVKRVVSLLTQALESGGSLADALRVLSMELSRETRLKLGEIRAGKIGVGILLPLIL 296
Query: 138 IIIIIIIIIIIIDLIFDFTFM 158
+II +++ ++I+ I
Sbjct: 297 VIIPVLLFVVILPAILGIASS 317
>gnl|CDD|217911 pfam04123, DUF373, Domain of unknown function (DUF373). Archaeal
domain of unknown function. Predicted to be an integral
membrane protein with six transmembrane regions.
Length = 344
Score = 41.8 bits (99), Expect = 9e-04
Identities = 10/80 (12%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 76 YIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ + + +I + +I + I ++ I +++ + + I + +
Sbjct: 265 GAVPWLALAALIAFLGKLIDEYLNGRFRLWRYINAPFFVLAIGLVVYGLSGYFLSIELAL 324
Query: 129 IIIIIIIIIIIIIIIIIIII 148
I + I I++ I+I ++
Sbjct: 325 TSISYLAISIVVGILISLVG 344
Score = 40.3 bits (95), Expect = 0.003
Identities = 9/54 (16%), Positives = 26/54 (48%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+ +YI ++ I +++ + + I + + I + I I++ I+I ++
Sbjct: 291 FRLWRYINAPFFVLAIGLVVYGLSGYFLSIELALTSISYLAISIVVGILISLVG 344
Score = 39.9 bits (94), Expect = 0.003
Identities = 10/74 (13%), Positives = 32/74 (43%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++ + +I + +I + + I ++ I +++ + + I + + I
Sbjct: 269 WLALAALIAFLGKLIDEYLNGRFRLWRYINAPFFVLAIGLVVYGLSGYFLSIELALTSIS 328
Query: 136 IIIIIIIIIIIIII 149
+ I I++ I+I +
Sbjct: 329 YLAISIVVGILISL 342
Score = 39.9 bits (94), Expect = 0.003
Identities = 15/108 (13%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 57 YLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
+L+ K + R +I ++ II+I+I II + + + I + +
Sbjct: 207 FLRELLKRVRESLYEGRITFITYVVSIILILIGIIYGYLSLEKLSAISAGGVAATFLNGA 266
Query: 117 IIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIDLIFDFT 156
+ + + +I + +I + I ++ I +++ +
Sbjct: 267 VPWLALAALIAFLGKLIDEYLNGRFRLWRYINAPFFVLAIGLVVYGLS 314
Score = 39.5 bits (93), Expect = 0.004
Identities = 10/74 (13%), Positives = 31/74 (41%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ +I + +I + + I ++ I +++ + + I + + I
Sbjct: 270 LALAALIAFLGKLIDEYLNGRFRLWRYINAPFFVLAIGLVVYGLSGYFLSIELALTSISY 329
Query: 136 IIIIIIIIIIIIII 149
+ I I++ I+I ++
Sbjct: 330 LAISIVVGILISLV 343
Score = 38.0 bits (89), Expect = 0.014
Identities = 12/88 (13%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----- 130
Y++ II+I+I II + + + I + + + + + +I + +I
Sbjct: 229 YVVSIILILIGIIYGYLSLEKLSAISAGGVAATFLNGAVPWLALAALIAFLGKLIDEYLN 288
Query: 131 ---IIIIIIIIIIIIIIIIIIIDLIFDF 155
+ I ++ I +++ + +
Sbjct: 289 GRFRLWRYINAPFFVLAIGLVVYGLSGY 316
Score = 37.6 bits (88), Expect = 0.017
Identities = 8/56 (14%), Positives = 25/56 (44%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+ + I ++ I +++ + + I + + I + I I++ I+I ++
Sbjct: 289 GRFRLWRYINAPFFVLAIGLVVYGLSGYFLSIELALTSISYLAISIVVGILISLVG 344
Score = 37.2 bits (87), Expect = 0.022
Identities = 8/57 (14%), Positives = 26/57 (45%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
++ + I ++ I +++ + + I + + I + I I++ I+I ++
Sbjct: 288 NGRFRLWRYINAPFFVLAIGLVVYGLSGYFLSIELALTSISYLAISIVVGILISLVG 344
Score = 37.2 bits (87), Expect = 0.023
Identities = 9/61 (14%), Positives = 27/61 (44%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+Y+ + I ++ I +++ + + I + + I + I I++ I+I ++
Sbjct: 284 DEYLNGRFRLWRYINAPFFVLAIGLVVYGLSGYFLSIELALTSISYLAISIVVGILISLV 343
Query: 134 I 134
Sbjct: 344 G 344
Score = 36.8 bits (86), Expect = 0.033
Identities = 10/60 (16%), Positives = 28/60 (46%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
E++ R + I ++ I +++ + + I + + I + I I++ I+I ++
Sbjct: 285 EYLNGRFRLWRYINAPFFVLAIGLVVYGLSGYFLSIELALTSISYLAISIVVGILISLVG 344
Score = 35.7 bits (83), Expect = 0.083
Identities = 10/89 (11%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIII 120
S + + + + + +I + +I I ++ I +++
Sbjct: 251 SAISAGGVAATFLNGAVPWLALAALIAFLGKLIDEYLNGRFRLWRYINAPFFVLAIGLVV 310
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ + I + + I + I I++ I+
Sbjct: 311 YGLSGYFLSIELALTSISYLAISIVVGIL 339
>gnl|CDD|218835 pfam05975, EcsB, Bacterial ABC transporter protein EcsB. This
family consists of several bacterial ABC transporter
proteins which are homologous to the EcsB protein of
Bacillus subtilis. EcsB is thought to encode a
hydrophobic protein with six membrane-spanning helices
in a pattern found in other hydrophobic components of
ABC transporters.
Length = 385
Score = 41.8 bits (99), Expect = 0.001
Identities = 13/113 (11%), Positives = 48/113 (42%), Gaps = 32/113 (28%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------- 113
F+R Y+ + + + +I ++II + + I+ ++ + +I
Sbjct: 273 SFLRSGD-YLGLYLRLTLIGGLLIIFLPNGWLSAIVGVLFLYLIGFQLLPLWTHFDYNLW 331
Query: 114 -----------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
++ ++++ +I++ +I++I ++ ++++I+ I+
Sbjct: 332 TQLYPISEEEKLKALKQLLRRLLLLQLILLSLIVLIASGQLLPALLLLIVGIV 384
Score = 38.4 bits (90), Expect = 0.012
Identities = 9/101 (8%), Positives = 52/101 (51%), Gaps = 23/101 (22%)
Query: 76 YIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIIIIII-------------II 112
I+ +I+ +++ I+++ I+ +++++ ++++ +
Sbjct: 105 LILQLILQVLLAILLLPLLLKILGLSILQYVLLLLFLLLLKAWNLLLKWRILYLVEGKRW 164
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
++I +I+ ++++ ++ ++ ++ I+ +I+++++++ L
Sbjct: 165 DLLIRLILNLLLLYLLFLLAPLLAAILFLILLVVLLLLLRK 205
Score = 36.4 bits (85), Expect = 0.041
Identities = 18/144 (12%), Positives = 67/144 (46%), Gaps = 31/144 (21%)
Query: 43 SQLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIII------ 96
+LR L++ D++ L E ++K K I +I+ +I+ +++ I++
Sbjct: 72 GRLRTLLKEADQVFLLPKE------EHMKKYLKKAIRYSLILQLILQVLLAILLLPLLLK 125
Query: 97 --------IIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIIIII 137
+++++ ++++ +++ ++I +I+ ++++ ++ ++
Sbjct: 126 ILGLSILQYVLLLLFLLLLKAWNLLLKWRILYLVEGKRWDLLIRLILNLLLLYLLFLLAP 185
Query: 138 IIIIIIIIIIIIDLIFDFTFMYLK 161
++ I+ +I+++ L+ + K
Sbjct: 186 LLAAILFLILLVVLLLLLRKLKKK 209
Score = 31.4 bits (72), Expect = 1.4
Identities = 7/63 (11%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 56 LYLQTATKCM-----VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 110
L+ + E + ++ ++ ++++ +I++ +I++I ++ ++++I+
Sbjct: 322 LWTHFDYNLWTQLYPISEEEKLKALKQLLRRLLLLQLILLSLIVLIASGQLLPALLLLIV 381
Query: 111 III 113
I+
Sbjct: 382 GIV 384
Score = 29.5 bits (67), Expect = 7.3
Identities = 7/49 (14%), Positives = 23/49 (46%)
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ + + +I ++II + + I+ ++ + +I ++ L F +
Sbjct: 283 LYLRLTLIGGLLIIFLPNGWLSAIVGVLFLYLIGFQLLPLWTHFDYNLW 331
>gnl|CDD|215952 pfam00499, Oxidored_q3, NADH-ubiquinone/plastoquinone
oxidoreductase chain 6.
Length = 140
Score = 39.5 bits (93), Expect = 0.001
Identities = 8/90 (8%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--IIIIIIIIIIIIIIIIII 130
SK I + + +I++ + + +++ ++ + +I+ ++ + I+++ + ++ +
Sbjct: 9 FSKNPIYLGLSLILLSLSLSLLLFLLGSSWLGLILFLVYVGGILVLFLYVVSLSPNEKFK 68
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
++++++++ I++ F+ +
Sbjct: 69 FKKKSKFLLLLLLLLFILLLFFLLFSNLSF 98
Score = 39.5 bits (93), Expect = 0.001
Identities = 9/75 (12%), Positives = 41/75 (54%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+F K+ ++++++++ I+++ ++ + + I + ++ ++ +I I++
Sbjct: 66 KFKFKKKSKFLLLLLLLLFILLLFFLLFSNLSFSLNSISSSNVNLLSLLYSSNSLIFILL 125
Query: 128 IIIIIIIIIIIIIII 142
++++I +I +I +
Sbjct: 126 SLLLLIALIGVIKLA 140
Score = 38.0 bits (89), Expect = 0.004
Identities = 9/76 (11%), Positives = 41/76 (53%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
E + + K ++++++++ I+++ ++ + + I + ++ ++ +I I+
Sbjct: 65 EKFKFKKKSKFLLLLLLLLFILLLFFLLFSNLSFSLNSISSSNVNLLSLLYSSNSLIFIL 124
Query: 128 IIIIIIIIIIIIIIII 143
+ ++++I +I +I +
Sbjct: 125 LSLLLLIALIGVIKLA 140
Score = 38.0 bits (89), Expect = 0.004
Identities = 7/108 (6%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--IIIIIIIIIIII---I 123
+ ++ + + +I++ + + +++ ++ + +I+ ++ + I+++ + ++ +
Sbjct: 7 VLFSKNPIYLGLSLILLSLSLSLLLFLLGSSWLGLILFLVYVGGILVLFLYVVSLSPNEK 66
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLF 171
++++++++ I+++ ++ F+ + V L
Sbjct: 67 FKFKKKSKFLLLLLLLLFILLLFFLLFSNLSFSLNSISSSNVNLLSLL 114
Score = 36.4 bits (85), Expect = 0.011
Identities = 8/76 (10%), Positives = 41/76 (53%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
++ K+ ++++++++ I+++ ++ + + I + ++ ++ +I I+
Sbjct: 65 EKFKFKKKSKFLLLLLLLLFILLLFFLLFSNLSFSLNSISSSNVNLLSLLYSSNSLIFIL 124
Query: 132 IIIIIIIIIIIIIIII 147
+ ++++I +I +I +
Sbjct: 125 LSLLLLIALIGVIKLA 140
Score = 36.1 bits (84), Expect = 0.018
Identities = 7/76 (9%), Positives = 39/76 (51%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++ ++++++++ I+++ ++ + + I + ++ ++ +I I
Sbjct: 64 NEKFKFKKKSKFLLLLLLLLFILLLFFLLFSNLSFSLNSISSSNVNLLSLLYSSNSLIFI 123
Query: 134 IIIIIIIIIIIIIIII 149
++ ++++I +I +I +
Sbjct: 124 LLSLLLLIALIGVIKL 139
Score = 36.1 bits (84), Expect = 0.019
Identities = 7/66 (10%), Positives = 37/66 (56%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++++++++ I+++ ++ + + I + ++ ++ +I I++ ++++I +I
Sbjct: 75 FLLLLLLLLFILLLFFLLFSNLSFSLNSISSSNVNLLSLLYSSNSLIFILLSLLLLIALI 134
Query: 143 IIIIII 148
+I +
Sbjct: 135 GVIKLA 140
Score = 36.1 bits (84), Expect = 0.019
Identities = 7/66 (10%), Positives = 37/66 (56%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++++++++ I+++ ++ + + I + ++ ++ +I I++ ++++I +I
Sbjct: 75 FLLLLLLLLFILLLFFLLFSNLSFSLNSISSSNVNLLSLLYSSNSLIFILLSLLLLIALI 134
Query: 144 IIIIII 149
+I +
Sbjct: 135 GVIKLA 140
Score = 35.7 bits (83), Expect = 0.021
Identities = 6/99 (6%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIII--IIIIIIIIIIII-----------IIIII 122
+I++ + + +++ ++ + +I+ ++ + I+++ + ++ + +++
Sbjct: 19 SLILLSLSLSLLLFLLGSSWLGLILFLVYVGGILVLFLYVVSLSPNEKFKFKKKSKFLLL 78
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
+++++ I+++ ++ + + I + + +Y
Sbjct: 79 LLLLLFILLLFFLLFSNLSFSLNSISSSNVNLLSLLYSS 117
Score = 34.5 bits (80), Expect = 0.062
Identities = 6/102 (5%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 77 IIIIIIIIII--IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--IIIIIIIIII 132
I+ ++++ I + + +I++ + + +++ ++ + +I+ ++ + I+++ + ++
Sbjct: 1 ILSSLLVLFSKNPIYLGLSLILLSLSLSLLLFLLGSSWLGLILFLVYVGGILVLFLYVVS 60
Query: 133 II-----------IIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+ ++++++++ I+++ + +
Sbjct: 61 LSPNEKFKFKKKSKFLLLLLLLLFILLLFFLLFSNLSFSLNS 102
Score = 33.0 bits (76), Expect = 0.19
Identities = 9/95 (9%), Positives = 47/95 (49%), Gaps = 17/95 (17%)
Query: 76 YIIIIIII--IIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIIIIIIIII 122
I+ ++ + I+++ + ++ + ++++++++ I+++ ++ + +
Sbjct: 41 LILFLVYVGGILVLFLYVVSLSPNEKFKFKKKSKFLLLLLLLLFILLLFFLLFSNLSFSL 100
Query: 123 IIIIIIIIIIIIIII----IIIIIIIIIIIIDLIF 153
I + ++ ++ +I I++ ++++I LI
Sbjct: 101 NSISSSNVNLLSLLYSSNSLIFILLSLLLLIALIG 135
>gnl|CDD|214442 MTH00160, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 335
Score = 41.3 bits (98), Expect = 0.001
Identities = 12/81 (14%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIII 128
K+III ++I + ++ I+I+ +I + + I +++ + +I
Sbjct: 255 KWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLI 314
Query: 129 IIIIIIIIIIIIIIIIIIIII 149
+ + I + +I+ ++ ++
Sbjct: 315 LNFLSFISLFGLILSSLLFLL 335
Score = 39.4 bits (93), Expect = 0.005
Identities = 7/71 (9%), Positives = 29/71 (40%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ ++ I+I+ +I + + I +++ + +I+ + I +
Sbjct: 265 NNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFLSFISLF 324
Query: 134 IIIIIIIIIII 144
+I+ ++ ++
Sbjct: 325 GLILSSLLFLL 335
Score = 39.4 bits (93), Expect = 0.005
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 23/110 (20%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------------- 115
KY +I + II++ II+ ++ +++ I ++I +++
Sbjct: 59 KYFLIQALASIILLFSIILNMLNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLS 118
Query: 116 ----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
I++ I +I++ +I IIIIII+ II I L+
Sbjct: 119 WINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAIIGAIGGLNQTSLR 168
Score = 38.7 bits (91), Expect = 0.008
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
III ++I + ++ I+I+ +I + + I +++ + +I+
Sbjct: 257 IIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316
Query: 142 IIIIIIIIDLIFDFTFMYL 160
+ I + LI + ++L
Sbjct: 317 FLSFISLFGLIL-SSLLFL 334
Score = 37.1 bits (87), Expect = 0.023
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 20/92 (21%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------------------IIIIIIII 113
S ++ II+ ++ +++ I ++I +++ I I++
Sbjct: 68 SIILLFSIILNMLNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMT 127
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I +I++ +I IIIIII+ II I
Sbjct: 128 WQKIAPLILLSYLINNNFIIIIIILSAIIGAI 159
Score = 36.3 bits (85), Expect = 0.051
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------- 122
+I I++ I +I++ +I IIIIII+ II I +
Sbjct: 117 LSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSI 176
Query: 123 -----IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
++ ++I + +I +I II + II L F +L
Sbjct: 177 NHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLN 220
Score = 30.2 bits (69), Expect = 4.0
Identities = 15/94 (15%), Positives = 40/94 (42%), Gaps = 18/94 (19%)
Query: 74 SKYIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIIIIIIIII-- 118
SK + + +I+ +I I I ++ I +I ++ + +I
Sbjct: 6 SKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQA 65
Query: 119 ---IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
II++ II+ ++ +++ I ++I +++
Sbjct: 66 LASIILLFSIILNMLNLMLFNNISSMLINSSLLL 99
Score = 30.2 bits (69), Expect = 4.3
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 16/99 (16%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIII----------------IIIIIIIIIIIIIIIII 119
Y+I IIIIII+ II I + ++ ++I + +I +
Sbjct: 139 YLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFL 198
Query: 120 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
I II + II++ I + + F
Sbjct: 199 IYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 41.5 bits (98), Expect = 0.001
Identities = 3/78 (3%), Positives = 39/78 (50%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
++R + + + + ++ ++ ++ + + +I+ I+ +++ ++++ ++ +++
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLL 178
Query: 131 IIIIIIIIIIIIIIIIII 148
++ + ++ ++
Sbjct: 179 LLALAFFLLSFGYYGLLT 196
Score = 35.8 bits (83), Expect = 0.080
Identities = 5/114 (4%), Positives = 47/114 (41%), Gaps = 29/114 (25%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------------------I 114
I+ I+ +++ ++++ ++ +++++ + ++ + +
Sbjct: 157 LILAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLL 216
Query: 115 IIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ + + I+ ++ ++ +++I +++ + ++++ L + +
Sbjct: 217 LSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLV 270
Score = 33.4 bits (77), Expect = 0.38
Identities = 4/72 (5%), Positives = 37/72 (51%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+++ + + I+ ++ ++ + ++++I +++ + ++++ + + ++++ +
Sbjct: 213 AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVAL 272
Query: 147 IIIDLIFDFTFM 158
+++ F F
Sbjct: 273 LLLGFGLGFAFP 284
>gnl|CDD|233873 TIGR02454, CbiQ_TIGR, cobalt ABC transporter, permease protein
CbiQ. This model represents the permease component of
the cobalt-specific ABC transporter. This model finds
permeases which are generally next to the other subunits
of the complex (CbiN and CbiO) or the cobalamin
biosynthesis protein CbiM which is a transmembrane
protein which likely interacts with the complex in some
manner. In genomes which possess all of these subunits
the ATPase is most likely running in the direction of
import (for the biosynthesis of coenzyme B12). In other
genomes, this subunit may be involved in the export of
cobalt and/or other closely related heavy metals
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 198
Score = 40.3 bits (95), Expect = 0.001
Identities = 9/67 (13%), Positives = 38/67 (56%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
R K I + ++++ +++ I ++I+ I ++++ + I + I++ + + I +++ ++
Sbjct: 4 RVKLISALALLVLAVLLPNPIALLILAIFALLLVGLAGIPLRILLKRLAVPIGFLLVGLL 63
Query: 133 IIIIIII 139
+++
Sbjct: 64 LLLFSNG 70
Score = 38.8 bits (91), Expect = 0.004
Identities = 7/76 (9%), Positives = 40/76 (52%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+I + ++++ +++ I ++I+ I ++++ + I + I++ + + I +++ +++++
Sbjct: 7 LISALALLVLAVLLPNPIALLILAIFALLLVGLAGIPLRILLKRLAVPIGFLLVGLLLLL 66
Query: 143 IIIIIIIDLIFDFTFM 158
+ + +
Sbjct: 67 FSNGTPGEPLLVLGPL 82
Score = 37.3 bits (87), Expect = 0.015
Identities = 7/64 (10%), Positives = 37/64 (57%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+I + ++++ +++ I ++I+ I ++++ + I + I++ + + I +++ +++++
Sbjct: 7 LISALALLVLAVLLPNPIALLILAIFALLLVGLAGIPLRILLKRLAVPIGFLLVGLLLLL 66
Query: 138 IIII 141
Sbjct: 67 FSNG 70
Score = 37.3 bits (87), Expect = 0.015
Identities = 7/64 (10%), Positives = 37/64 (57%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+I + ++++ +++ I ++I+ I ++++ + I + I++ + + I +++ +++++
Sbjct: 7 LISALALLVLAVLLPNPIALLILAIFALLLVGLAGIPLRILLKRLAVPIGFLLVGLLLLL 66
Query: 139 IIII 142
Sbjct: 67 FSNG 70
Score = 37.3 bits (87), Expect = 0.015
Identities = 7/64 (10%), Positives = 37/64 (57%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+I + ++++ +++ I ++I+ I ++++ + I + I++ + + I +++ +++++
Sbjct: 7 LISALALLVLAVLLPNPIALLILAIFALLLVGLAGIPLRILLKRLAVPIGFLLVGLLLLL 66
Query: 140 IIII 143
Sbjct: 67 FSNG 70
Score = 37.3 bits (87), Expect = 0.015
Identities = 7/64 (10%), Positives = 37/64 (57%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+I + ++++ +++ I ++I+ I ++++ + I + I++ + + I +++ +++++
Sbjct: 7 LISALALLVLAVLLPNPIALLILAIFALLLVGLAGIPLRILLKRLAVPIGFLLVGLLLLL 66
Query: 141 IIII 144
Sbjct: 67 FSNG 70
Score = 37.3 bits (87), Expect = 0.015
Identities = 7/64 (10%), Positives = 37/64 (57%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+I + ++++ +++ I ++I+ I ++++ + I + I++ + + I +++ +++++
Sbjct: 7 LISALALLVLAVLLPNPIALLILAIFALLLVGLAGIPLRILLKRLAVPIGFLLVGLLLLL 66
Query: 142 IIII 145
Sbjct: 67 FSNG 70
>gnl|CDD|234335 TIGR03732, lanti_perm_MutE, lantibiotic protection ABC transporter
permease subunit, MutE/EpiE family. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family is largely restricted to
gallidermin-family lantibiotic cassettes, but also
include orphan transporter cassettes in species that
lack candidate lantibiotic precursor and synthetase
genes. In most species, this subunit is paralogous to an
adjacent gene, modeled separately.
Length = 241
Score = 40.8 bits (96), Expect = 0.001
Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I++I I ++I II+ I +++I +I I I ++ ++I + + I + + +
Sbjct: 90 ILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPLCLFLARK 149
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+ + I++ +++ LIF + K F
Sbjct: 150 FGMFVSILVNLVLGLIFG-IVLATKSF 175
Score = 40.0 bits (94), Expect = 0.002
Identities = 16/84 (19%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIII 128
+K ++I I ++I II+ I +++I +I I I ++ ++I + + I + + +
Sbjct: 87 IAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPLCLFL 146
Query: 129 ---IIIIIIIIIIIIIIIIIIIII 149
+ + I++ +++ +I I++
Sbjct: 147 ARKFGMFVSILVNLVLGLIFGIVL 170
Score = 38.8 bits (91), Expect = 0.005
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ I I++I I ++I II+ I +++I +I I I ++ ++I + + I L
Sbjct: 85 VWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPLCL 144
Score = 36.1 bits (84), Expect = 0.035
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ I I++I I ++I II+ I +++I +I I I ++ ++I + + I
Sbjct: 85 VWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQI 140
Score = 36.1 bits (84), Expect = 0.035
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ I I++I I ++I II+ I +++I +I I I ++ ++I + + I
Sbjct: 85 VWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQI 140
>gnl|CDD|133466 cd06856, GT_GPT_archaea, UDP-GlcNAc:dolichol-P GlcNAc-1-P
transferase (GPT)-like proteins in archaea. Eukaryotic
GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc
to dolichol-P to form GlcNAc-P-P-dolichol. The reaction
is the first step in the assembly of dolichol-linked
oligosaccharide intermediates and is essential for
eukaryotic N-linked glycosylation. Evidence for the
existence of the N-glycosylation pathway in archaea has
emerged and genes responsible for the pathway have been
identified. A glycosyl transferase gene Mv1751 in M.
voltae encodes for the enzyme that carries out the first
step in the pathway, the attachment of GlcNAc to a
dolichol lipid carrier in the membrane. A lethal
mutation in the alg7 (GPT) gene in Saccharomyces
cerevisiae was successfully complemented with Mv1751,
the archaea gene, indicating that eukaryotic and
archaeal enzymes may use the same substrates and are
evolutionarily closer than the bacterial enzyme, which
uses a different substrate.
Length = 280
Score = 41.1 bits (97), Expect = 0.001
Identities = 17/103 (16%), Positives = 44/103 (42%), Gaps = 19/103 (18%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------- 120
+ + K ++ + I ++++ + + I ++ I+ ++I+ + I
Sbjct: 63 LSQSEKVLLTALPAIPLLVLKAGNPLTSLPIGGRVLGILYYLLIVPLGITGASNAFNMLA 122
Query: 121 ----------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
III++ + II++I +II +I++ L F
Sbjct: 123 GFNGLEAGMGIIILLALAIILLINGDYDALIIALILVAALLAF 165
Score = 29.5 bits (67), Expect = 5.9
Identities = 5/44 (11%), Positives = 22/44 (50%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
I +++ + ++ + + + + ++I ++ +I ++D I
Sbjct: 19 IAVLLGFSLGLLFLSALTHSVEALALLITSLLAGLIGLLDDILG 62
>gnl|CDD|220439 pfam09847, DUF2074, Predicted permease (DUF2074). This domain,
found in various archaeal hypothetical proteins, has no
known function.
Length = 449
Score = 41.6 bits (98), Expect = 0.001
Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 25/115 (21%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIII-------- 117
SK + + +I + I + ++I+++I + + + I+ I + I
Sbjct: 335 LLSKLLTMSLIYLAISLTLLILVLIYKGMNALYLFPLFPDPILTSGISLFINYNRLGAET 394
Query: 118 -----------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
I++ I+ II+ I I+ I+ + ++ I ++ K
Sbjct: 395 INLPSFGFLAFIVLFILNGIIVGIAAILSFILSYPLSFLVSTAITIIGALLLWKK 449
Score = 38.9 bits (91), Expect = 0.009
Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 15/101 (14%)
Query: 56 LYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIII---------------IIIII 100
L + +V + + Y+ + I+ I + I + I
Sbjct: 347 LAISLTLLILVLIYKGMNALYLFPLFPDPILTSGISLFINYNRLGAETINLPSFGFLAFI 406
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
++ I+ II+ I I+ I+ + ++ I II +++
Sbjct: 407 VLFILNGIIVGIAAILSFILSYPLSFLVSTAITIIGALLLW 447
Score = 30.0 bits (68), Expect = 4.3
Identities = 17/102 (16%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----- 126
++S+ ++++++ I +I I I + + I +I II++ I +I+ + I
Sbjct: 263 RKSQNLVLLLMPIFFVIPNIYSIAKSGFPLRLTIFLIAFIIVLSSIYLILFLKIEVNGFS 322
Query: 127 -----------IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
++ ++ + +I + I + ++I+ LI+
Sbjct: 323 FLRSLPLSRREFLLSKLLTMSLIYLAISLTLLILVLIYKGMN 364
Score = 29.3 bits (66), Expect = 7.9
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIII 131
I ++ ++ I+ I++ I +++ I I ++ ++ ++ I I
Sbjct: 105 IYSGLLGLLWSILAILLGHSIGLLLFIKFGGRISGRGSRSKNLLRNFGRLLFLVFIFGIY 164
Query: 132 IIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+II I+ +I I + Y
Sbjct: 165 LIIQYNANIVYEMIPPIPEYYDYIFPFY 192
>gnl|CDD|220687 pfam10316, 7TM_GPCR_Srbc, Serpentine type 7TM GPCR chemoreceptor
Srbc. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srbc is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 272
Score = 41.0 bits (97), Expect = 0.001
Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 19/114 (16%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+ +K+ + + + + I ++ I+ I + +I + +
Sbjct: 30 IFYSKKKKKPDMSLFYFRFALDVFYGFSVSIYLLYYILYSISPEFFVKNLIFYLGLPSSN 89
Query: 125 IIIIIIIIIIII-------------------IIIIIIIIIIIIIDLIFDFTFMY 159
I I I+ ++I I II+I+ I +F+ ++
Sbjct: 90 IGAIRSILALLISIERVIAVYFPIFYHNYRPKIPNFIILILAISYGLFEQYVLF 143
>gnl|CDD|217005 pfam02378, PTS_EIIC, Phosphotransferase system, EIIC. The
bacterial phosphoenolpyruvate: sugar phosphotransferase
system (PTS) is a multi-protein system involved in the
regulation of a variety of metabolic and transcriptional
processes. The sugar-specific permease of the PTS
consists of three domains (IIA, IIB and IIC). The IIC
domain catalyzes the transfer of a phosphoryl group from
IIB to the sugar substrate.
Length = 313
Score = 41.2 bits (97), Expect = 0.001
Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIII- 129
+ II + +++I ++ +I I + + +++I+ ++ +II + ++
Sbjct: 150 GPRFVPIITGFVTLLVIGPVLGLIWPAIQGGLNALGLLLILAGSLLGSLIIGFLERLLWP 209
Query: 130 -----IIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
I I + I I + F V
Sbjct: 210 FGLHGAFIAIAWFLPIGGSNAIANQQAYGAGAHILTGGFDV 250
>gnl|CDD|224900 COG1989, PulO, Type II secretory pathway, prepilin signal peptidase
PulO and related peptidases [Cell motility and secretion
/ Posttranslational modification, protein turnover,
chaperones / Intracellular trafficking and secretion].
Length = 254
Score = 40.5 bits (95), Expect = 0.002
Identities = 9/80 (11%), Positives = 43/80 (53%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I I I ++ ++ ++ +++ I+ +++I ++++I ++ + +I + ++
Sbjct: 65 ICKSKISIRYPLVELLTGVLFLLLKILPFGWGVLLIGLLVLISFLLALSLIDLDTQLLPD 124
Query: 141 IIIIIIIIIDLIFDFTFMYL 160
++ + ++ + L+F +++
Sbjct: 125 LLTLPLLWLGLLFSLIVIFI 144
Score = 40.5 bits (95), Expect = 0.002
Identities = 8/87 (9%), Positives = 46/87 (52%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ +++ I+ +++I ++++I ++ + +I + ++ ++ + ++ + ++ +I+
Sbjct: 82 GVLFLLLKILPFGWGVLLIGLLVLISFLLALSLIDLDTQLLPDLLTLPLLWLGLLFSLIV 141
Query: 135 IIIIIIIIIIIIIIIDLIFDFTFMYLK 161
I I ++ ++ ++ + ++ K
Sbjct: 142 IFIALLDALLGAVVGYGLLALIYLLYK 168
Score = 38.9 bits (91), Expect = 0.006
Identities = 7/81 (8%), Positives = 42/81 (51%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+++I ++++I ++ + +I + ++ ++ + ++ + ++ +I+I I ++ ++ +
Sbjct: 95 WGVLLIGLLVLISFLLALSLIDLDTQLLPDLLTLPLLWLGLLFSLIVIFIALLDALLGAV 154
Query: 143 IIIIIIIDLIFDFTFMYLKEF 163
+ ++ + + + K
Sbjct: 155 VGYGLLALIYLLYKLLLGKGL 175
Score = 36.2 bits (84), Expect = 0.044
Identities = 9/103 (8%), Positives = 39/103 (37%), Gaps = 14/103 (13%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------ 125
K +++ ++ +I+ + ++I + + I + + + ++ +I ++
Sbjct: 1 KMVVFLLFLLGLILGSFLNVVIRRLPDKLSISLPRSLCPFCGRGLKLLDLIPLLSYLLLR 60
Query: 126 --------IIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I I ++ ++ ++ +++ I+ L
Sbjct: 61 GKCRICKSKISIRYPLVELLTGVLFLLLKILPFGWGVLLIGLL 103
Score = 32.8 bits (75), Expect = 0.50
Identities = 7/59 (11%), Positives = 30/59 (50%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
+++ ++ ++ +I+ + ++I + + I + + + ++DLI +++ L+
Sbjct: 2 MVVFLLFLLGLILGSFLNVVIRRLPDKLSISLPRSLCPFCGRGLKLLDLIPLLSYLLLR 60
>gnl|CDD|226657 COG4194, COG4194, Predicted membrane protein [General function
prediction only].
Length = 350
Score = 40.9 bits (96), Expect = 0.002
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
R R II +I+ + + II +I++ + +I +II II+I + + + +
Sbjct: 211 RAARFREFLNIIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVSTLALAL 270
Query: 128 II 129
I
Sbjct: 271 KI 272
Score = 35.9 bits (83), Expect = 0.064
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
S + II +I+ + + II +I++ + +I +II II+I +
Sbjct: 206 DDSAIRAARFREFLNIIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVST 265
Query: 132 IIIIIII 138
+ + + I
Sbjct: 266 LALALKI 272
Score = 35.5 bits (82), Expect = 0.096
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
II +I+ + + II +I++ + +I +II II+I + + + + I
Sbjct: 221 IIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVSTLALALKI 272
Score = 35.5 bits (82), Expect = 0.096
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
II +I+ + + II +I++ + +I +II II+I + + + + I
Sbjct: 221 IIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVSTLALALKI 272
Score = 35.5 bits (82), Expect = 0.096
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
II +I+ + + II +I++ + +I +II II+I + + + + I
Sbjct: 221 IIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVSTLALALKI 272
Score = 35.5 bits (82), Expect = 0.096
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
II +I+ + + II +I++ + +I +II II+I + + + + I
Sbjct: 221 IIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVSTLALALKI 272
Score = 35.5 bits (82), Expect = 0.096
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
II +I+ + + II +I++ + +I +II II+I + + + + I
Sbjct: 221 IIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVSTLALALKI 272
Score = 35.5 bits (82), Expect = 0.096
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
II +I+ + + II +I++ + +I +II II+I + + + + I
Sbjct: 221 IIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVSTLALALKI 272
Score = 35.5 bits (82), Expect = 0.096
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
II +I+ + + II +I++ + +I +II II+I + + + + I
Sbjct: 221 IIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVSTLALALKI 272
Score = 35.5 bits (82), Expect = 0.096
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
II +I+ + + II +I++ + +I +II II+I + + + + I
Sbjct: 221 IIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVSTLALALKI 272
Score = 35.5 bits (82), Expect = 0.096
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
II +I+ + + II +I++ + +I +II II+I + + + + I
Sbjct: 221 IIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVSTLALALKI 272
Score = 35.5 bits (82), Expect = 0.096
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
II +I+ + + II +I++ + +I +II II+I + + + + I
Sbjct: 221 IIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVSTLALALKI 272
Score = 35.5 bits (82), Expect = 0.096
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
II +I+ + + II +I++ + +I +II II+I + + + + I
Sbjct: 221 IIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVSTLALALKI 272
Score = 30.8 bits (70), Expect = 2.7
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
II +I+ + + II +I++ + +I +II II+I + +
Sbjct: 221 IIALIVGWFMFSLFAIISAMILLRLNPSGLITHVIIAIILIAVSTLALA 269
>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function
prediction only].
Length = 351
Score = 40.4 bits (94), Expect = 0.002
Identities = 39/213 (18%), Positives = 64/213 (30%), Gaps = 45/213 (21%)
Query: 247 YYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLR----PPVYDIKEIQALENPEGDPNSN 302
YKT M + C + FAH P Y + ++ NP P S
Sbjct: 112 LYKTEML-RSSTEIPYC-RYPDKNPFAHSKAISSLAQTHPKYKTESLEVFINPGYVPYSK 169
Query: 303 SNGPNALDKEGKLLTEDPKWQDTNYVLSNYKTEQCKRPPRLCRQGYACPQFHNSRDKRRS 362
+L ++ Q R P+ + + S
Sbjct: 170 RCCFISL---------------PLTDINLQPLSQ--RKPKSGKNCTSYTLGKESDAHPHD 212
Query: 363 PRTFKYRSTPCPNVKHGDEWGEPANCESGDL---CQYCHTRTEQQF----------HPE- 408
++ + P K P CES C Y + + QF +
Sbjct: 213 ELIYQKQEQNKPLYK-----TNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKK 267
Query: 409 ---IYKSTKCNDVQQAGYCPRGVFCAFAHVDTE 438
+++ C + +++GYCP G+ C F H D
Sbjct: 268 KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS 300
>gnl|CDD|216683 pfam01758, SBF, Sodium Bile acid symporter family. This family
consists of Na+/bile acid co-transporters. These
transmembrane proteins function in the liver in the
uptake of bile acids from portal blood plasma a process
mediated by the co-transport of Na+. Also in the family
is ARC3 from S. cerevisiae, this is a putative
transmembrane protein involved in resistance to arsenic
compounds.
Length = 188
Score = 39.2 bits (92), Expect = 0.002
Identities = 12/77 (15%), Positives = 40/77 (51%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+++ +++ + + + +I ++I +II +I I+ + I+ ++ I +I
Sbjct: 109 FLLSGLLLDVGTAVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISLI 168
Query: 136 IIIIIIIIIIIIIIDLI 152
+++ I++I + ++I
Sbjct: 169 GLLLTIVVIFSLKGEVI 185
Score = 36.9 bits (86), Expect = 0.018
Identities = 12/75 (16%), Positives = 36/75 (48%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S + +++ + + + +I ++I +II +I I+ + I+ ++ I +
Sbjct: 108 SFLLSGLLLDVGTAVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISL 167
Query: 134 IIIIIIIIIIIIIII 148
I +++ I++I +
Sbjct: 168 IGLLLTIVVIFSLKG 182
Score = 35.3 bits (82), Expect = 0.050
Identities = 13/69 (18%), Positives = 33/69 (47%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ + +I ++I +II +I I+ + I+ ++ I +I +++ I++I
Sbjct: 120 TAVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISLIGLLLTIVVIFS 179
Query: 143 IIIIIIIDL 151
+ +I L
Sbjct: 180 LKGEVIASL 188
Score = 35.3 bits (82), Expect = 0.050
Identities = 12/74 (16%), Positives = 33/74 (44%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ + + +I ++I +II +I I+ + I+ ++ I +I +++
Sbjct: 113 GLLLDVGTAVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISLIGLLL 172
Query: 133 IIIIIIIIIIIIII 146
I++I + +I
Sbjct: 173 TIVVIFSLKGEVIA 186
Score = 35.0 bits (81), Expect = 0.065
Identities = 12/73 (16%), Positives = 34/73 (46%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ + + + +I ++I +II +I I+ + I+ ++ I +I +++
Sbjct: 114 LLLDVGTAVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISLIGLLLT 173
Query: 135 IIIIIIIIIIIII 147
I++I + +I
Sbjct: 174 IVVIFSLKGEVIA 186
Score = 34.6 bits (80), Expect = 0.100
Identities = 12/67 (17%), Positives = 32/67 (47%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ + +I ++I +II +I I+ + I+ ++ I +I +++ I++I
Sbjct: 120 TAVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISLIGLLLTIVVIFS 179
Query: 142 IIIIIII 148
+ +I
Sbjct: 180 LKGEVIA 186
Score = 31.1 bits (71), Expect = 1.2
Identities = 12/79 (15%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIIII 134
++ ++ ++ +++ + + + +I ++I +II +I I+ I+
Sbjct: 100 APLVTPLLSFLLSGLLLDVGTAVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRIL 159
Query: 135 IIIIIIIIIIIIIIIDLIF 153
++ I +I +++ I +IF
Sbjct: 160 PVLPPISLIGLLLTIVVIF 178
>gnl|CDD|218853 pfam06011, TRP, Transient receptor potential (TRP) ion channel.
This family of proteins are transient receptor potential
(TRP) ion channels. They are essential for cellular
viability and are involved in cell growth and cell wall
synthesis. The genes for these proteins are homologous
to polycystic kidney disease related ion channel genes.
Length = 531
Score = 40.7 bits (96), Expect = 0.002
Identities = 14/89 (15%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 77 IIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIII-------IIIII 120
++ ++II ++ +I++I + I I ++ + ++ + I+ +
Sbjct: 420 VVGLLIIEVLYLILLIWFRPYMDKRTNALNIAIAVVRFLNALLFLFFSPLFGQSEIVRGV 479
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ ++I +I + + ++I+I I II +
Sbjct: 480 MGVVIFVINAAVALFLLILIAINTIIALF 508
Score = 39.1 bits (92), Expect = 0.007
Identities = 15/89 (16%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 79 IIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIII------IIIIII 123
++ ++II ++ +I++I + I I ++ + ++ + I+ +
Sbjct: 420 VVGLLIIEVLYLILLIWFRPYMDKRTNALNIAIAVVRFLNALLFLFFSPLFGQSEIVRGV 479
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ ++I +I + + ++I+I I II L
Sbjct: 480 MGVVIFVINAAVALFLLILIAINTIIALF 508
Score = 37.2 bits (87), Expect = 0.029
Identities = 14/89 (15%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 80 IIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIII------IIIIII 124
++ ++II ++ +I++I + I I ++ + ++ + I+ +
Sbjct: 420 VVGLLIIEVLYLILLIWFRPYMDKRTNALNIAIAVVRFLNALLFLFFSPLFGQSEIVRGV 479
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ ++I +I + + ++I+I I I +F
Sbjct: 480 MGVVIFVINAAVALFLLILIAINTIIALF 508
Score = 36.0 bits (84), Expect = 0.060
Identities = 12/69 (17%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIII 122
++ KR+ + I I ++ + ++ + I+ ++ ++I +I + + ++I+I
Sbjct: 440 YMDKRTNALNIAIAVVRFLNALLFLFFSPLFGQSEIVRGVMGVVIFVINAAVALFLLILI 499
Query: 123 IIIIIIIII 131
I II +
Sbjct: 500 AINTIIALF 508
Score = 35.7 bits (83), Expect = 0.094
Identities = 14/89 (15%), Positives = 38/89 (42%), Gaps = 21/89 (23%)
Query: 66 VCEFVRKRSKYIIIIIII---------IIIIIIIIIIIIIIIIIIIII-------IIIII 109
+ E + Y+I++I + I I ++ + ++ + I+ +
Sbjct: 425 IIEVL-----YLILLIWFRPYMDKRTNALNIAIAVVRFLNALLFLFFSPLFGQSEIVRGV 479
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ ++I +I + + ++I+I I II +
Sbjct: 480 MGVVIFVINAAVALFLLILIAINTIIALF 508
Score = 31.4 bits (72), Expect = 2.0
Identities = 9/119 (7%), Positives = 46/119 (38%), Gaps = 24/119 (20%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIII 122
I +I+I +I++++I I+ ++ + + ++ +++I
Sbjct: 253 FIFFLIVIALIVVLVIQFKFILELLARFGKMKPDKFAEFRKKWWSFLKGTLLRLVLIFFP 312
Query: 123 IIIIIII----------IIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLF 171
I+++ + +++ ++ + +++ ++ + ++ + L+
Sbjct: 313 PIVVLSLWQFTQADSAAAVVLAVVFLALLLGLLGWAAFRVISIARKSVRLYGNPAYLLY 371
Score = 29.9 bits (68), Expect = 5.1
Identities = 14/159 (8%), Positives = 51/159 (32%), Gaps = 61/159 (38%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIII----------- 103
I + + +F + S +++ ++ + +++ ++ +I I
Sbjct: 309 IFFPPIVVLSLW-QFTQADSAAAVVLAVVFLALLLGLLGWAAFRVISIARKSVRLYGNPA 367
Query: 104 ---------------------------IIIIIIIIIIIIIII----------IIIIIIII 126
+++ + + + + I ++ ++II
Sbjct: 368 YLLYGDLKTLNKYGFLYNQYRADAYWFVVVPLAYMFVRGLFIGALQGSGKAQVVGLLIIE 427
Query: 127 IIIIIIIIII------------IIIIIIIIIIIIIDLIF 153
++ +I++I I I ++ + ++ L F
Sbjct: 428 VLYLILLIWFRPYMDKRTNALNIAIAVVRFLNALLFLFF 466
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 40.3 bits (95), Expect = 0.002
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 22/83 (26%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIII----------------------IIIIIIII 108
+ S III I II III + + I
Sbjct: 104 KIFSIKNTKIIITFIWIIAIIISTLFYFPLGCHFYYSPESLTWSFDEDPPCAEIGWYGDF 163
Query: 109 IIIIIIIIIIIIIIIIIIIIIII 131
+ ++++II II +I I +
Sbjct: 164 LKNLVLVIITNIINVITFIKLRK 186
Score = 39.1 bits (92), Expect = 0.006
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 39/118 (33%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIII-----------------IIIIIIIIIIIIII 116
+ + I +I++ + I + ++I + I III I II
Sbjct: 62 PELLNSHIGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIITFIWII 121
Query: 117 IIIIIIIIIIII----------------------IIIIIIIIIIIIIIIIIIIIIDLI 152
III + + I + ++++II II++I
Sbjct: 122 AIIISTLFYFPLGCHFYYSPESLTWSFDEDPPCAEIGWYGDFLKNLVLVIITNIINVI 179
Score = 37.6 bits (88), Expect = 0.015
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 22/89 (24%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIII----------------------II 106
F K K I III I II III + + I
Sbjct: 98 FPFKYKKIFSIKNTKIIITFIWIIAIIISTLFYFPLGCHFYYSPESLTWSFDEDPPCAEI 157
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ ++++II II +I I +
Sbjct: 158 GWYGDFLKNLVLVIITNIINVITFIKLRK 186
>gnl|CDD|219625 pfam07895, DUF1673, Protein of unknown function (DUF1673). This
family contains hypothetical proteins of unknown
function expressed by two archaeal species.
Length = 204
Score = 39.2 bits (92), Expect = 0.003
Identities = 15/100 (15%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---III 126
+RKRS +++ I + + ++I + I ++ ++ + + +++ + +I +
Sbjct: 52 LRKRSNRLLLASIFLTLAYFLVISQLGINLLFLLAGLFLSLLLYLFTWKKQMIRYDALAK 111
Query: 127 IIII------IIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+I I+ +++II+++I++++ F L
Sbjct: 112 KPVIRYSNKKKIVRSLLVIILLLILLLLFLYYILGHFESL 151
>gnl|CDD|217647 pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts
as a virulence factor. In Bordetella pertussis, brkB is
essential for resistance to complement-dependent killing
by serum. This family was originally predicted to be
ribonuclease BN, but this prediction has since been
shown to be incorrect.
Length = 255
Score = 39.9 bits (94), Expect = 0.003
Identities = 5/70 (7%), Positives = 41/70 (58%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ ++ + + +++ +++++ +++ + + ++ +I+++ + + I +++ ++ ++ ++
Sbjct: 107 FLRRRLLSLGLTLLLGLLLLLSLLLSVFLPSLLGFLILLLGLGLEIAVLLQLLRWLLSLL 166
Query: 150 DLIFDFTFMY 159
L F +Y
Sbjct: 167 LLFLLFALLY 176
>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family.
Presenilin 1 and presenilin 2 are polytopic membrane
proteins, whose genes are mutated in some individuals
with Alzheimer's disease. Distant homologues, present in
eukaryotes and archaea, also contain conserved aspartic
acid residues which are predicted to contribute to
catalysis. At least one member of this family has been
shown to possess signal peptide peptidase activity.
Length = 249
Score = 39.5 bits (93), Expect = 0.003
Identities = 14/85 (16%), Positives = 42/85 (49%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K KY++I+++I + ++ + ++ + + + ++I+++ ++ I
Sbjct: 26 KFFKYLVIVLVIYFSSLGVLFLYSLLYPLEVFRVDYPTLLILLLNFAVVGFWCIHRKGAW 85
Query: 132 IIIIIIIIIIIIIIIIIIDLIFDFT 156
I +I I + + I+ I+ L ++T
Sbjct: 86 IQQDLIGISLCMAILFILRLPSEWT 110
Score = 37.2 bits (87), Expect = 0.019
Identities = 9/79 (11%), Positives = 35/79 (44%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ +I+++I + ++ + ++ + + + ++I+++ ++ I
Sbjct: 26 KFFKYLVIVLVIYFSSLGVLFLYSLLYPLEVFRVDYPTLLILLLNFAVVGFWCIHRKGAW 85
Query: 131 IIIIIIIIIIIIIIIIIII 149
I +I I + + I+ I+
Sbjct: 86 IQQDLIGISLCMAILFILR 104
Score = 36.5 bits (85), Expect = 0.029
Identities = 14/103 (13%), Positives = 45/103 (43%)
Query: 47 GDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 106
L + I++ AT +V + + I+++I + ++ + ++ + + +
Sbjct: 3 SLLNSLVAIVFPIVATFVLVLLYKFFKYLVIVLVIYFSSLGVLFLYSLLYPLEVFRVDYP 62
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
++I+++ ++ I I +I I + + I+ I+ +
Sbjct: 63 TLLILLLNFAVVGFWCIHRKGAWIQQDLIGISLCMAILFILRL 105
Score = 32.6 bits (75), Expect = 0.50
Identities = 6/77 (7%), Positives = 38/77 (49%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++ ++ I+ I+ +++++ ++I+++I + ++ + ++ + + +
Sbjct: 4 LLNSLVAIVFPIVATFVLVLLYKFFKYLVIVLVIYFSSLGVLFLYSLLYPLEVFRVDYPT 63
Query: 137 IIIIIIIIIIIIIDLIF 153
++I+++ ++ I
Sbjct: 64 LLILLLNFAVVGFWCIH 80
Score = 31.5 bits (72), Expect = 1.1
Identities = 6/75 (8%), Positives = 39/75 (52%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+Y ++ ++ I+ I+ +++++ ++I+++I + ++ + ++ + + +
Sbjct: 1 EYSLLNSLVAIVFPIVATFVLVLLYKFFKYLVIVLVIYFSSLGVLFLYSLLYPLEVFRVD 60
Query: 135 IIIIIIIIIIIIIII 149
++I+++ ++
Sbjct: 61 YPTLLILLLNFAVVG 75
Score = 30.3 bits (69), Expect = 3.3
Identities = 7/81 (8%), Positives = 37/81 (45%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++ ++ I+ I+ +++++ ++I+++I + ++ + ++ + + +
Sbjct: 4 LLNSLVAIVFPIVATFVLVLLYKFFKYLVIVLVIYFSSLGVLFLYSLLYPLEVFRVDYPT 63
Query: 146 IIIIDLIFDFTFMYLKEFRVE 166
++I+ L F + +
Sbjct: 64 LLILLLNFAVVGFWCIHRKGA 84
Score = 29.1 bits (66), Expect = 7.3
Identities = 7/79 (8%), Positives = 40/79 (50%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++ ++ I+ I+ +++++ ++I+++I + ++ + ++ + + +
Sbjct: 4 LLNSLVAIVFPIVATFVLVLLYKFFKYLVIVLVIYFSSLGVLFLYSLLYPLEVFRVDYPT 63
Query: 143 IIIIIIIDLIFDFTFMYLK 161
++I+++ + F ++ K
Sbjct: 64 LLILLLNFAVVGFWCIHRK 82
>gnl|CDD|119348 cd06550, TM_ABC_iron-siderophores_like, Transmembrane subunit (TM),
of Periplasmic Binding Protein (PBP)-dependent
ATP-Binding Cassette (ABC) transporters involved in the
uptake of siderophores, heme, vitamin B12, or the
divalent cations Mg2+ and Zn2+. PBP-dependent ABC
transporters consist of a PBP, two TMs, and two
cytoplasmic ABCs, and are mainly involved in importing
solutes from the environment. The solute is captured by
the PBP which delivers it to a gated translocation
pathway formed by the two TMs. The TMs are bundles of
alpha helices that transverse the cytoplasmic membrane
multiple times. The two ABCs bind and hydrolyze ATP and
drive the transport reaction. Each TM has a prominent
cytoplasmic loop which contacts an ABC and represents a
conserved motif. The two TMs form either a homodimer
(e.g. in the case of the BtuC subunits of the
Escherichia coli BtuCD vitamin B12 transporter), a
heterodimer (e.g. the TroC and TroD subunits of the
Treponema pallidum general transition metal transporter,
TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein
of the E. coli ferrichrome transporter, FhuBC). FhuB
contains two tandem TMs which associate to form the
pseudo-heterodimer. Both FhuB TMs are found in this
hierarchy.
Length = 261
Score = 39.8 bits (94), Expect = 0.003
Identities = 8/82 (9%), Positives = 36/82 (43%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ +++ +++ I + + + I ++++++ + +I+I I++
Sbjct: 39 LLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGGLSPSKLILIGIVLSAFFS 98
Query: 136 IIIIIIIIIIIIIIDLIFDFTF 157
+I+I ++ + + + F
Sbjct: 99 AGVILISLLSDDSLQDLNIWLF 120
Score = 39.5 bits (93), Expect = 0.003
Identities = 12/110 (10%), Positives = 44/110 (40%), Gaps = 18/110 (16%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
S Y + + I ++++++ + +I+I I++ +I+I ++
Sbjct: 48 LGIGLSNYALGAFAFAGALAIALLVLLLASRGGLSPSKLILIGIVLSAFFSAGVILISLL 107
Query: 129 IIIII------------------IIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ ++I++II+++++++++ L +
Sbjct: 108 SDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTF 157
Score = 39.5 bits (93), Expect = 0.004
Identities = 10/79 (12%), Positives = 36/79 (45%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
++ +++ +++ I + + + I ++++++ + +I+I I++
Sbjct: 37 GALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGGLSPSKLILIGIVLSAF 96
Query: 142 IIIIIIIIDLIFDFTFMYL 160
+I+I L+ D + L
Sbjct: 97 FSAGVILISLLSDDSLQDL 115
Score = 38.7 bits (91), Expect = 0.007
Identities = 9/81 (11%), Positives = 36/81 (44%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++ +++ +++ I + + + I ++++++ + +I+I I++
Sbjct: 37 GALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGGLSPSKLILIGIVLSAF 96
Query: 137 IIIIIIIIIIIIIDLIFDFTF 157
+I+I ++ D + D
Sbjct: 97 FSAGVILISLLSDDSLQDLNI 117
Score = 37.5 bits (88), Expect = 0.014
Identities = 13/99 (13%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ I ++++++ + +I+I I++ +I+I ++ + + I
Sbjct: 59 AFAFAGALAIALLVLLLASRGGLSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIW 118
Query: 136 I-----------IIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+ ++I++II++++++ L+ + L F
Sbjct: 119 LFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTF 157
Score = 36.0 bits (84), Expect = 0.050
Identities = 3/92 (3%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIII 117
+ ++++++ ++++ + ++ +I+ + +I ++ + ++ I+++
Sbjct: 170 NLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLL 229
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ ++ ++ + + + ++ + ++
Sbjct: 230 LGDLLSRTLLPSELPVGPVTALLGAPYFLYLL 261
Score = 32.5 bits (75), Expect = 0.54
Identities = 7/91 (7%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIII 129
+ +++++++ ++++ + ++ +I+ + +I + + ++ + ++ I+++
Sbjct: 170 NLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLL 229
Query: 130 IIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ ++ ++ + + + L+ F+YL
Sbjct: 230 LGDLLSRTLLPSELPVGPVTALLGAPYFLYL 260
Score = 31.8 bits (73), Expect = 1.1
Identities = 4/91 (4%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIII 116
R ++++ ++++ + ++ +I+ + +I ++ + ++ I++++
Sbjct: 171 LLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLL 230
Query: 117 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
++ ++ + + + ++ + ++
Sbjct: 231 GDLLSRTLLPSELPVGPVTALLGAPYFLYLL 261
Score = 31.4 bits (72), Expect = 1.2
Identities = 11/133 (8%), Positives = 55/133 (41%), Gaps = 47/133 (35%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII--------------------- 102
++ + R +I+I I++ +I+I ++
Sbjct: 69 ALLVLLLASRGGLSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTW 128
Query: 103 --IIIIIIIIIIIIIIIII------------------------IIIIIIIIIIIIIIIII 136
++I++II++++++++++ + +++++++ ++++ +
Sbjct: 129 EDLLILLIILLLVLLLLLLLSRKLNLLTFDEDLAKSLGINVNLLRLLLLLLVALLVVAAV 188
Query: 137 IIIIIIIIIIIII 149
++ +I+ + +I
Sbjct: 189 ALVGVILFVGLIA 201
Score = 31.0 bits (71), Expect = 1.7
Identities = 13/125 (10%), Positives = 55/125 (44%), Gaps = 41/125 (32%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIII------IIIII-----------IIIII 111
R +I+I I++ +I+I ++ + I + ++I++
Sbjct: 76 ASRGGLSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILL 135
Query: 112 IIIIIIIIIIII------------------------IIIIIIIIIIIIIIIIIIIIIIII 147
II++++++++++ + +++++++ ++++ + ++ +I+
Sbjct: 136 IILLLVLLLLLLLSRKLNLLTFDEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVIL 195
Query: 148 IIDLI 152
+ LI
Sbjct: 196 FVGLI 200
>gnl|CDD|224185 COG1266, COG1266, Predicted metal-dependent membrane protease
[General function prediction only].
Length = 226
Score = 39.5 bits (92), Expect = 0.003
Identities = 6/98 (6%), Positives = 50/98 (51%), Gaps = 20/98 (20%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII- 134
++++++++ + +I + ++ + ++ ++ + I+++++ +++I ++ + + ++
Sbjct: 44 LALLLVLLLLALFLIALAFLLGFLKLLGLLRKGGLAWILLLLLGLLLIPLLFSLFLSLLS 103
Query: 135 -----------------IIIIIIIIIIIIIII--DLIF 153
+++ ++++I+ + +L+F
Sbjct: 104 VGLLLNQLPLLLTLAVLWLLLFFLVLLILAPLAEELLF 141
Score = 38.7 bits (90), Expect = 0.005
Identities = 3/76 (3%), Positives = 42/76 (55%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
++ ++ + I+++++ +++I ++ + + ++ + +++ + +++ + +
Sbjct: 60 LAFLLGFLKLLGLLRKGGLAWILLLLLGLLLIPLLFSLFLSLLSVGLLLNQLPLLLTLAV 119
Query: 129 IIIIIIIIIIIIIIII 144
+ +++ ++++I+ +
Sbjct: 120 LWLLLFFLVLLILAPL 135
Score = 38.4 bits (89), Expect = 0.008
Identities = 3/77 (3%), Positives = 45/77 (58%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ ++ ++ ++ + I+++++ +++I ++ + + ++ + +++ + +++ +
Sbjct: 59 ALAFLLGFLKLLGLLRKGGLAWILLLLLGLLLIPLLFSLFLSLLSVGLLLNQLPLLLTLA 118
Query: 129 IIIIIIIIIIIIIIIII 145
++ +++ ++++I+ +
Sbjct: 119 VLWLLLFFLVLLILAPL 135
>gnl|CDD|227053 COG4709, COG4709, Predicted membrane protein [Function unknown].
Length = 195
Score = 38.9 bits (91), Expect = 0.003
Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+II + ++I +I+ +I I++ + +I ++ I+ +I+ + + +I I
Sbjct: 90 LLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVAAGILGGVILGVESLFLIGSSISA 149
Query: 134 IIIII------IIIIIIIIIIIDLIFDFTFMYLKEF 163
I I + + I+I I+ T Y+K
Sbjct: 150 FFIGIGSLLLGLGLGIVIFAIVKYASRLTGKYIKWH 185
Score = 33.9 bits (78), Expect = 0.14
Identities = 13/68 (19%), Positives = 35/68 (51%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
II +I + ++ +II + ++I +I+ +I I++ + +I ++ I+ +I ++
Sbjct: 82 IIALIGLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVAAGILGGVILGVESLF 141
Query: 160 LKEFRVEQ 167
L +
Sbjct: 142 LIGSSISA 149
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 40.3 bits (95), Expect = 0.004
Identities = 10/55 (18%), Positives = 29/55 (52%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++ LI
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLI 325
Score = 39.5 bits (93), Expect = 0.007
Identities = 8/55 (14%), Positives = 28/55 (50%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++ +
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLI 325
Score = 38.7 bits (91), Expect = 0.010
Identities = 8/52 (15%), Positives = 27/52 (51%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 270 SILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 38.7 bits (91), Expect = 0.011
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I+ +II ++ +I + ++ + + +I++ I + ++I +I ++
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321
Score = 35.3 bits (82), Expect = 0.13
Identities = 7/47 (14%), Positives = 24/47 (51%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
I+ +II ++ +I + ++ + + +I++ I + ++I +
Sbjct: 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLL 317
>gnl|CDD|227621 COG5305, COG5305, Predicted membrane protein [Function unknown].
Length = 552
Score = 40.1 bits (94), Expect = 0.004
Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 1/108 (0%)
Query: 31 NSMSISALKCIQSQLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIII 90
NS + I + ++ I L A + I + +
Sbjct: 266 NSFRVGIPDLITLDGIVG-QLINPIYPLIAAWLLAFSLLFFDLLHGLDFPINGVARFLYP 324
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I + II+I+ + + I++ I+ +II + +I+ ++ + I
Sbjct: 325 IWLAIILILGALYTLCRATERKILLFILTLIIAPALPLILSDLVSVFI 372
Score = 39.7 bits (93), Expect = 0.005
Identities = 14/84 (16%), Positives = 36/84 (42%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I ++ ++ ++ + I + + I + II+I+ + + I++ I
Sbjct: 292 LIAAWLLAFSLLFFDLLHGLDFPINGVARFLYPIWLAIILILGALYTLCRATERKILLFI 351
Query: 136 IIIIIIIIIIIIIIDLIFDFTFMY 159
+ +II + +I+ DL+ F
Sbjct: 352 LTLIIAPALPLILSDLVSVFITRN 375
Score = 37.8 bits (88), Expect = 0.023
Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------IIIII 127
+I ++ ++ ++ + I + + I + II+I+ + I++
Sbjct: 291 PLIAAWLLAFSLLFFDLLHGLDFPINGVARFLYPIWLAIILILGALYTLCRATERKILLF 350
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I+ +II + +I+ ++ + I YL
Sbjct: 351 ILTLIIAPALPLILSDLVSVFITRNPYLIPSYL 383
Score = 29.3 bits (66), Expect = 9.2
Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------III 139
I +I ++ ++ ++ + I + + I + II+I+ I+
Sbjct: 289 IYPLIAAWLLAFSLLFFDLLHGLDFPINGVARFLYPIWLAIILILGALYTLCRATERKIL 348
Query: 140 IIIIIIIIIIDLIF 153
+ I+ +II L
Sbjct: 349 LFILTLIIAPALPL 362
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase.
Length = 222
Score = 39.1 bits (92), Expect = 0.004
Identities = 6/49 (12%), Positives = 21/49 (42%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 117
R K I++ I++ + I++ +I + ++ + +++
Sbjct: 140 LQRLLDKLAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 38.3 bits (90), Expect = 0.006
Identities = 4/54 (7%), Positives = 24/54 (44%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
++ ++ + I++ I++ + I++ +I + ++ + +++
Sbjct: 135 SAKTPLQRLLDKLAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 38.3 bits (90), Expect = 0.007
Identities = 5/47 (10%), Positives = 22/47 (46%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
+ K +K ++ I++ + I++ +I + ++ + +++
Sbjct: 142 RLLDKLAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 36.4 bits (85), Expect = 0.028
Identities = 4/42 (9%), Positives = 20/42 (47%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ I++ I++ + I++ +I + ++ + +++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVLVAAC 188
Score = 31.0 bits (71), Expect = 1.7
Identities = 4/38 (10%), Positives = 19/38 (50%)
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ I++ I++ + I++ +I + ++ + ++
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRALAVL 184
Score = 28.7 bits (65), Expect = 9.7
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+ I++ I++ + I++ +I D +
Sbjct: 147 LAKILVPIVLALAILVFLIWFFRGGDFLEALLRA 180
>gnl|CDD|219372 pfam07314, DUF1461, Protein of unknown function (DUF1461). This
family contains a number of hypothetical bacterial
proteins of unknown function approximately 200 residues
long. These are possibly integral membrane proteins.
Length = 180
Score = 38.3 bits (90), Expect = 0.004
Identities = 14/62 (22%), Positives = 37/62 (59%), Gaps = 9/62 (14%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIDLIFD-- 154
+ ++ ++ I++++ ++I + ++ +++ II++I+ +II +I +ID FD
Sbjct: 91 LFLLGYLVFNILLLLALLIFLYLLKKKKKWKLLLKTSIILLILPLIIGLIALID--FDKF 148
Query: 155 FT 156
FT
Sbjct: 149 FT 150
Score = 38.3 bits (90), Expect = 0.004
Identities = 10/55 (18%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIII 124
K + ++ ++ I++++ ++I + ++ +++ II++I+ +II +I +I
Sbjct: 89 KNLFLLGYLVFNILLLLALLIFLYLLKKKKKWKLLLKTSIILLILPLIIGLIALI 143
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family. The Solute:Sodium
Symporter (SSS) Family (TC 2.A.21) Members of the SSS
family catalyze solute:Na+ symport. The solutes
transported may be sugars, amino acids, nucleosides,
inositols, vitamins, urea or anions, depending on the
system. Members of the SSS family have been identified
in bacteria, archaea and animals, and all functionally
well characterized members catalyze solute uptake via
Na+ symport. Proteins of the SSS generally share a core
of 13 TMSs, but different members of the family may have
different numbers of TMSs. A 13 TMS topology with a
periplasmic N-terminus and a cytoplasmic C-terminus has
been experimentally determined for the proline:Na+
symporter, PutP, of E. coli [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 407
Score = 40.0 bits (94), Expect = 0.004
Identities = 16/103 (15%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
E++ KR I+ + ++ +I+ I + + + + ++I +I + + + ++++ I I+
Sbjct: 70 EYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITIL 129
Query: 128 IIII----------II--IIIIIIIIIIIIIIIIDLIFDFTFM 158
+ I +I+I+ I+ + ++ TF+
Sbjct: 130 YTVFGGLKAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGTFV 172
>gnl|CDD|201526 pfam00957, Synaptobrevin, Synaptobrevin.
Length = 89
Score = 36.4 bits (85), Expect = 0.004
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIII 97
K K II+ ++++I+I+IIII+I
Sbjct: 64 KNMKLKIILGLVVLILILIIIIVICG 89
Score = 34.4 bits (80), Expect = 0.023
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIII 99
+ II+ ++++I+I+IIII+I
Sbjct: 65 NMKLKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 79 IIIIIIIIIIIIIIIIIIIIII 100
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 80 IIIIIIIIIIIIIIIIIIIIII 101
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 81 IIIIIIIIIIIIIIIIIIIIII 102
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 82 IIIIIIIIIIIIIIIIIIIIII 103
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 83 IIIIIIIIIIIIIIIIIIIIII 104
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 84 IIIIIIIIIIIIIIIIIIIIII 105
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 85 IIIIIIIIIIIIIIIIIIIIII 106
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 86 IIIIIIIIIIIIIIIIIIIIII 107
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 87 IIIIIIIIIIIIIIIIIIIIII 108
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 88 IIIIIIIIIIIIIIIIIIIIII 109
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 89 IIIIIIIIIIIIIIIIIIIIII 110
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 90 IIIIIIIIIIIIIIIIIIIIII 111
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 91 IIIIIIIIIIIIIIIIIIIIII 112
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 92 IIIIIIIIIIIIIIIIIIIIII 113
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 93 IIIIIIIIIIIIIIIIIIIIII 114
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 94 IIIIIIIIIIIIIIIIIIIIII 115
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 95 IIIIIIIIIIIIIIIIIIIIII 116
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 96 IIIIIIIIIIIIIIIIIIIIII 117
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 97 IIIIIIIIIIIIIIIIIIIIII 118
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 98 IIIIIIIIIIIIIIIIIIIIII 119
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 99 IIIIIIIIIIIIIIIIIIIIII 120
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 100 IIIIIIIIIIIIIIIIIIIIII 121
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 101 IIIIIIIIIIIIIIIIIIIIII 122
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 102 IIIIIIIIIIIIIIIIIIIIII 123
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 103 IIIIIIIIIIIIIIIIIIIIII 124
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 104 IIIIIIIIIIIIIIIIIIIIII 125
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 105 IIIIIIIIIIIIIIIIIIIIII 126
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 106 IIIIIIIIIIIIIIIIIIIIII 127
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 107 IIIIIIIIIIIIIIIIIIIIII 128
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 108 IIIIIIIIIIIIIIIIIIIIII 129
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 109 IIIIIIIIIIIIIIIIIIIIII 130
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 110 IIIIIIIIIIIIIIIIIIIIII 131
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 111 IIIIIIIIIIIIIIIIIIIIII 132
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 112 IIIIIIIIIIIIIIIIIIIIII 133
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 113 IIIIIIIIIIIIIIIIIIIIII 134
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 114 IIIIIIIIIIIIIIIIIIIIII 135
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 115 IIIIIIIIIIIIIIIIIIIIII 136
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 116 IIIIIIIIIIIIIIIIIIIIII 137
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 117 IIIIIIIIIIIIIIIIIIIIII 138
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 118 IIIIIIIIIIIIIIIIIIIIII 139
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 119 IIIIIIIIIIIIIIIIIIIIII 140
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 120 IIIIIIIIIIIIIIIIIIIIII 141
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 121 IIIIIIIIIIIIIIIIIIIIII 142
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 122 IIIIIIIIIIIIIIIIIIIIII 143
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 123 IIIIIIIIIIIIIIIIIIIIII 144
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 124 IIIIIIIIIIIIIIIIIIIIII 145
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 125 IIIIIIIIIIIIIIIIIIIIII 146
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 126 IIIIIIIIIIIIIIIIIIIIII 147
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 127 IIIIIIIIIIIIIIIIIIIIII 148
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 128 IIIIIIIIIIIIIIIIIIIIII 149
+ II+ ++++I+I+IIII+I
Sbjct: 68 LKIILGLVVLILILIIIIVICG 89
Score = 31.0 bits (71), Expect = 0.43
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 133 IIIIIIIIIIIIIIIIIDLIF 153
+ II+ ++++I+I+III +I
Sbjct: 68 LKIILGLVVLILILIIIIVIC 88
>gnl|CDD|218966 pfam06271, RDD, RDD family. This family of proteins contain three
highly conserved amino acids: one arginine and two
aspartates, hence the name of RDD family. This region
contains two predicted transmembrane regions. The
arginine occurs at the N terminus of the first helix and
the first aspartate occurs in the middle of this helix.
The molecular function of this region is unknown.
However this region may be involved in transport of an
as yet unknown set of ligands (Bateman A pers. obs.).
Length = 131
Score = 37.3 bits (87), Expect = 0.005
Identities = 5/105 (4%), Positives = 51/105 (48%), Gaps = 27/105 (25%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------- 127
++I ++++ +++++I +++ + + ++++++++++++ ++ ++ +
Sbjct: 11 FLIDLLLLSLLLLLIFLLLGALGNLADSGGLLLLLLLLLLLVFLVYFVLFLSKKGQTLGK 70
Query: 128 -------------------IIIIIIIIIIIIIIIIIIIIIIDLIF 153
++ ++ +++ ++ I+++I +F
Sbjct: 71 RLLGLRVVDLDGEPPSLGQALLRELLKFLLLSLLSFILLLIGFLF 115
Score = 31.5 bits (72), Expect = 0.59
Identities = 5/53 (9%), Positives = 35/53 (66%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
+I ++++ +++++I +++ + + ++++++++++++ L++ F+ K
Sbjct: 12 LIDLLLLSLLLLLIFLLLGALGNLADSGGLLLLLLLLLLLVFLVYFVLFLSKK 64
>gnl|CDD|217102 pfam02554, CstA, Carbon starvation protein CstA. This family
consists of Carbon starvation protein CstA a predicted
membrane protein. It has been suggested that CstA is
involved in peptide utilisation.
Length = 382
Score = 39.5 bits (93), Expect = 0.005
Identities = 13/106 (12%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIII 118
+ E + + + +I I+ I+I+++ + ++++ + + + I I I++ I
Sbjct: 119 IAREELGPVAGVLFLIFILFILILVLAVFALVVVNALAASPWGVFTVAMTIPIAILMGIY 178
Query: 119 III----IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
++ +I ++++++ I++ + I + F +
Sbjct: 179 RYKRPGRVLEASVIGVVLLLLAIVLGPYVPISPALAPWFTLSKTTW 224
>gnl|CDD|188447 TIGR03932, PIA_icaD, intracellular adhesion protein D. Members of
this protein family are IcaD (intracellular adhesion
protein D), which with catalytic subunit IcaA forms an
N-acetylglucosaminyltransferase. In the absence of IcaC,
this enzyme forms N-acetylglucosamine oligomers up to 20
in length [Cell envelope, Biosynthesis and degradation
of surface polysaccharides and lipopolysaccharides].
Length = 88
Score = 36.3 bits (84), Expect = 0.005
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
VR+ ++ II + +I++I+ I + + + I I + + I+ I
Sbjct: 5 LNIVRE----CVLFIISCTFWLYCLIVVIVYIGTLFLQDFESVQTIRIALNVENREIVDI 60
Query: 127 IIIIIIIIIIIIIIIIIIIII 147
++ +III + +I+
Sbjct: 61 FETLLAFVIIIFVFFTSSLIL 81
Score = 36.3 bits (84), Expect = 0.006
Identities = 14/73 (19%), Positives = 33/73 (45%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++ II + +I++I+ I + + + I I + + I+ I ++ +II
Sbjct: 11 CVLFIISCTFWLYCLIVVIVYIGTLFLQDFESVQTIRIALNVENREIVDIFETLLAFVII 70
Query: 149 IDLIFDFTFMYLK 161
I + F + + K
Sbjct: 71 IFVFFTSSLILQK 83
Score = 35.9 bits (83), Expect = 0.007
Identities = 14/71 (19%), Positives = 31/71 (43%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++ II + +I++I+ I + + + I I + + I+ I ++ +II
Sbjct: 11 CVLFIISCTFWLYCLIVVIVYIGTLFLQDFESVQTIRIALNVENREIVDIFETLLAFVII 70
Query: 143 IIIIIIIDLIF 153
I + LI
Sbjct: 71 IFVFFTSSLIL 81
Score = 34.3 bits (79), Expect = 0.029
Identities = 12/72 (16%), Positives = 29/72 (40%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
++ II + +I++I+ I + + + I I + + I+ I ++ +II
Sbjct: 11 CVLFIISCTFWLYCLIVVIVYIGTLFLQDFESVQTIRIALNVENREIVDIFETLLAFVII 70
Query: 145 IIIIIDLIFDFT 156
I +
Sbjct: 71 IFVFFTSSLILQ 82
Score = 33.6 bits (77), Expect = 0.048
Identities = 13/78 (16%), Positives = 32/78 (41%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
++ II + +I++I+ I + + + I I + + I+ I ++ +II
Sbjct: 11 CVLFIISCTFWLYCLIVVIVYIGTLFLQDFESVQTIRIALNVENREIVDIFETLLAFVII 70
Query: 147 IIIDLIFDFTFMYLKEFR 164
I + ++ R
Sbjct: 71 IFVFFTSSLILQKWRQGR 88
>gnl|CDD|222635 pfam14264, Glucos_trans_II, Glucosyl transferase GtrII. This
family includes glucosyl transferase II from the
Shigella phage SfII, which mediates seroconversion of S.
flexneri when the phage is integrated into the host
chromosome.
Length = 317
Score = 39.2 bits (92), Expect = 0.005
Identities = 5/75 (6%), Positives = 44/75 (58%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
Y++I+++++ +++I++++ + +++ +++++++ + +I+++ + + +
Sbjct: 243 TYLLIVLLLLFLLLILLVVRKRKKRKKPLALLLFLLLLLLLPFAMFLILLLAPVTALRTL 302
Query: 135 IIIIIIIIIIIIIII 149
+ +++ I++
Sbjct: 303 MGYPLVLAFFFFILL 317
Score = 37.6 bits (88), Expect = 0.016
Identities = 4/75 (5%), Positives = 43/75 (57%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ +I+++++ +++I++++ + +++ +++++++ + +I+++ + + +
Sbjct: 243 TYLLIVLLLLFLLLILLVVRKRKKRKKPLALLLFLLLLLLLPFAMFLILLLAPVTALRTL 302
Query: 134 IIIIIIIIIIIIIII 148
+ +++ I++
Sbjct: 303 MGYPLVLAFFFFILL 317
Score = 35.7 bits (83), Expect = 0.065
Identities = 5/74 (6%), Positives = 42/74 (56%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
Y ++I+++++ +++I++++ + +++ +++++++ + +I+++ + +
Sbjct: 242 YTYLLIVLLLLFLLLILLVVRKRKKRKKPLALLLFLLLLLLLPFAMFLILLLAPVTALRT 301
Query: 136 IIIIIIIIIIIIII 149
++ +++ I
Sbjct: 302 LMGYPLVLAFFFFI 315
Score = 35.7 bits (83), Expect = 0.076
Identities = 3/80 (3%), Positives = 42/80 (52%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++I+++++ +++I++++ + +++ +++++++ + +I+++ +
Sbjct: 238 GYPYYTYLLIVLLLLFLLLILLVVRKRKKRKKPLALLLFLLLLLLLPFAMFLILLLAPVT 297
Query: 134 IIIIIIIIIIIIIIIIDLIF 153
+ ++ +++ ++
Sbjct: 298 ALRTLMGYPLVLAFFFFILL 317
Score = 35.3 bits (82), Expect = 0.096
Identities = 6/79 (7%), Positives = 42/79 (53%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
++I+++++ +++I++++ + +++ +++++++ + +I+++ +
Sbjct: 239 YPYYTYLLIVLLLLFLLLILLVVRKRKKRKKPLALLLFLLLLLLLPFAMFLILLLAPVTA 298
Query: 141 IIIIIIIIIDLIFDFTFMY 159
+ ++ + L F F +
Sbjct: 299 LRTLMGYPLVLAFFFFILL 317
Score = 35.3 bits (82), Expect = 0.10
Identities = 7/95 (7%), Positives = 48/95 (50%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ +++ ++ ++I+++++ +++I++++ + +++ +++++
Sbjct: 222 ILNNIKEFFSFLKSQSGYPYYTYLLIVLLLLFLLLILLVVRKRKKRKKPLALLLFLLLLL 281
Query: 126 IIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
++ + +I+++ + + ++ L+ F F L
Sbjct: 282 LLPFAMFLILLLAPVTALRTLMGYPLVLAFFFFIL 316
Score = 34.9 bits (81), Expect = 0.11
Identities = 15/111 (13%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
+LYL K + F + S Y I +I+ + ++ I+ I +
Sbjct: 185 LLYL-IINKVALALFHIELSDYQGISSLILSLKDLLKSILNNIKEFFSFLKSQSGYPYYT 243
Query: 115 IIIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIIIIDLIF 153
++I+++++ +++I+ + +++ +++++++ + +I L+
Sbjct: 244 YLLIVLLLLFLLLILLVVRKRKKRKKPLALLLFLLLLLLLPFAMFLILLLA 294
Score = 33.4 bits (77), Expect = 0.39
Identities = 13/116 (11%), Positives = 48/116 (41%), Gaps = 21/116 (18%)
Query: 69 FVRKRSKYIIIIIIIII---------IIIIIIIIIIIIIIIII------------IIIII 107
FV K +++ +++ + + I + +I++I+ ++ I+ +
Sbjct: 118 FVSKSKIRLLLSALLLALSLGLYQASLNVFIGLCLILLILDLLDNKKSIKSLFKKILRSL 177
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+++ +++ +II + + + I + I +I+ + ++ I + +
Sbjct: 178 ALLLAGLLLYLIINKVALALFHIELSDYQGISSLILSLKDLLKSILNNIKEFFSFL 233
Score = 33.4 bits (77), Expect = 0.40
Identities = 7/62 (11%), Positives = 34/62 (54%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
++ VRKR K + +++ +++++++ + +I+++ + + ++ +++ I
Sbjct: 256 LILLVVRKRKKRKKPLALLLFLLLLLLLPFAMFLILLLAPVTALRTLMGYPLVLAFFFFI 315
Query: 125 II 126
++
Sbjct: 316 LL 317
>gnl|CDD|226404 COG3887, COG3887, Predicted signaling protein consisting of a
modified GGDEF domain and a DHH domain [Signal
transduction mechanisms].
Length = 655
Score = 39.6 bits (93), Expect = 0.005
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
F KR I + +I II+II+ + I ++++++ +I +++
Sbjct: 4 FYHKRLLSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 38.9 bits (91), Expect = 0.011
Identities = 9/51 (17%), Positives = 27/51 (52%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
+ K ++ I + +I II+II+ + I ++++++ +I +++
Sbjct: 3 KFYHKRLLSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 38.1 bits (89), Expect = 0.015
Identities = 9/56 (16%), Positives = 28/56 (50%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
+ I + +I II+II+ + I ++++++ +I +++ + D ++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNY 65
Score = 38.1 bits (89), Expect = 0.017
Identities = 10/58 (17%), Positives = 27/58 (46%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVE 166
+ I + +I II+II+ + I ++++++ +I + L F + + +
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYIS 67
Score = 37.3 bits (87), Expect = 0.031
Identities = 9/56 (16%), Positives = 27/56 (48%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ I + +I II+II+ + I ++++++ +I +++ + D +
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNY 65
Score = 36.9 bits (86), Expect = 0.043
Identities = 9/61 (14%), Positives = 28/61 (45%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
+ I + +I II+II+ + I ++++++ +I +++ + + I
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISYL 69
Query: 156 T 156
+
Sbjct: 70 S 70
Score = 36.5 bits (85), Expect = 0.050
Identities = 9/51 (17%), Positives = 26/51 (50%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
Y ++ I + +I II+II+ + I ++++++ +I +++
Sbjct: 3 KFYHKRLLSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 35.8 bits (83), Expect = 0.089
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ I + +I II+II+ + I ++++++ +I +++
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLA 53
Score = 33.1 bits (76), Expect = 0.52
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQ 167
+ I + +I II+II+ + I ++ L+ F+ L Q
Sbjct: 10 LSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLAFTLFYQ 59
>gnl|CDD|220507 pfam09991, DUF2232, Predicted membrane protein (DUF2232). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 290
Score = 39.1 bits (92), Expect = 0.005
Identities = 15/88 (17%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------- 124
+ ++ I II +++++ + ++ I + +++I+ +++ I + +I
Sbjct: 203 PESLVWIYIIALLLLLFLKDEGGSLLYYIGLNLLVILGLLLFIQGLAVISFYFKRKGLPK 262
Query: 125 -IIIIIIIIIIIIIIIIIIIIIIIIIDL 151
+ I+I+++ I++ +++++ I+ IIDL
Sbjct: 263 AVRILILVLGILLPPLLLLVAILGIIDL 290
Score = 36.0 bits (84), Expect = 0.053
Identities = 15/111 (13%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------- 121
+K+S +I + ++ I+I + I + I +I +I +I + +
Sbjct: 80 KKKSPERTLIAGTLAFLLGILIAFALYIKFLGINLINQVIEMIRESVEQALTLYKGAGMP 139
Query: 122 ------IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVE 166
+ ++ + ++++++ +++I + L + LK V+
Sbjct: 140 GDVLAELKELLEEMFSLLLLLLPALLVITAFLAAFLNYLLAKPILKRLGVD 190
Score = 34.1 bits (79), Expect = 0.20
Identities = 10/104 (9%), Positives = 39/104 (37%), Gaps = 21/104 (20%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------ 129
YI + II++ ++ + II++ + + ++ +++ +++ + I+ + +
Sbjct: 12 YIPPLGIILLFLLPLPIILLTLRHGLKSGLLALLVAGLLLGLFGGPILALPYALQFGLLG 71
Query: 130 ---------------IIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+I + ++ I+I + +
Sbjct: 72 LVLGYLLKKKKSPERTLIAGTLAFLLGILIAFALYIKFLGINLI 115
Score = 33.3 bits (77), Expect = 0.33
Identities = 11/121 (9%), Positives = 44/121 (36%), Gaps = 32/121 (26%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------- 127
++ ++ + I + II++ ++ + II++ + + ++ +++ +++ +
Sbjct: 3 TAVLFLLSLYIPPLGIILLFLLPLPIILLTLRHGLKSGLLALLVAGLLLGLFGGPILALP 62
Query: 128 ------------------------IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+I + ++ I+I + I L + ++
Sbjct: 63 YALQFGLLGLVLGYLLKKKKSPERTLIAGTLAFLLGILIAFALYIKFLGINLINQVIEMI 122
Query: 164 R 164
R
Sbjct: 123 R 123
Score = 32.6 bits (75), Expect = 0.58
Identities = 8/73 (10%), Positives = 38/73 (52%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I ++ ++ + I + II++ ++ + II++ + + ++ +++ +++ + I+ +
Sbjct: 2 ITAVLFLLSLYIPPLGIILLFLLPLPIILLTLRHGLKSGLLALLVAGLLLGLFGGPILAL 61
Query: 141 IIIIIIIIIDLIF 153
+ ++ L+
Sbjct: 62 PYALQFGLLGLVL 74
Score = 32.2 bits (74), Expect = 0.86
Identities = 8/77 (10%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIII 135
I ++ ++ + I + II++ ++ + II++ + ++ +++ +++ + I+ +
Sbjct: 2 ITAVLFLLSLYIPPLGIILLFLLPLPIILLTLRHGLKSGLLALLVAGLLLGLFGGPILAL 61
Query: 136 IIIIIIIIIIIIIIDLI 152
+ ++ +++ L+
Sbjct: 62 PYALQFGLLGLVLGYLL 78
Score = 31.8 bits (73), Expect = 1.1
Identities = 9/66 (13%), Positives = 35/66 (53%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
I ++ ++ + I + II++ ++ + II++ + + ++ +++ +++ + I+ L
Sbjct: 2 ITAVLFLLSLYIPPLGIILLFLLPLPIILLTLRHGLKSGLLALLVAGLLLGLFGGPILAL 61
Query: 152 IFDFTF 157
+ F
Sbjct: 62 PYALQF 67
Score = 31.0 bits (71), Expect = 1.7
Identities = 9/76 (11%), Positives = 37/76 (48%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I ++ ++ + I + II++ ++ + II++ + + ++ +++ +++ + I+ +
Sbjct: 2 ITAVLFLLSLYIPPLGIILLFLLPLPIILLTLRHGLKSGLLALLVAGLLLGLFGGPILAL 61
Query: 145 IIIIIDLIFDFTFMYL 160
+ + YL
Sbjct: 62 PYALQFGLLGLVLGYL 77
>gnl|CDD|226957 COG4591, LolE, ABC-type transport system, involved in lipoprotein
release, permease component [Cell envelope biogenesis,
outer membrane].
Length = 408
Score = 39.2 bits (92), Expect = 0.006
Identities = 19/113 (16%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIII------II 119
+ + + + I+ II+++II++ II + +++ I I+ + I+
Sbjct: 257 QNGEFFSALRLEKTIMFIILVLIILVAAFNIISSLTMLVKEKTREIAILRAMGASPSHIM 316
Query: 120 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFL 172
I ++ +II +I ++ +I+ +++ + + +I + F + P+ L
Sbjct: 317 RIFLLQGLIIGLIGALLGVILGVLLALNLNSIIIFIEPLLGHTFGISTLPIEL 369
Score = 37.3 bits (87), Expect = 0.028
Identities = 20/106 (18%), Positives = 51/106 (48%), Gaps = 19/106 (17%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------------- 111
R+++ + + I+ II+++II++ II + +++
Sbjct: 255 REQNGEFFSALRLEKTIMFIILVLIILVAAFNIISSLTMLVKEKTREIAILRAMGASPSH 314
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
I+ I ++ +II +I ++ +I+ +++ + + III I+ + TF
Sbjct: 315 IMRIFLLQGLIIGLIGALLGVILGVLLALNLNSIIIFIEPLLGHTF 360
Score = 35.3 bits (82), Expect = 0.096
Identities = 12/73 (16%), Positives = 43/73 (58%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I+ I ++ +II +I ++ +I+ +++ + + III I ++ I + I + ++ +
Sbjct: 315 IMRIFLLQGLIIGLIGALLGVILGVLLALNLNSIIIFIEPLLGHTFGISTLPIELSLLDV 374
Query: 137 IIIIIIIIIIIII 149
+++++ +++ ++
Sbjct: 375 VLVLVFALLLSLL 387
Score = 34.6 bits (80), Expect = 0.18
Identities = 16/99 (16%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 50 EKVDKILYLQT--ATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 107
EK +I L+ A+ + I ++ +II +I ++ +I+ +++ + + I
Sbjct: 297 EKTREIAILRAMGASPSHI--------MRIFLLQGLIIGLIGALLGVILGVLLALNLNSI 348
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
II I ++ I + I + ++ ++++++ +++ ++
Sbjct: 349 IIFIEPLLGHTFGISTLPIELSLLDVVLVLVFALLLSLL 387
Score = 34.2 bits (79), Expect = 0.23
Identities = 13/73 (17%), Positives = 43/73 (58%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I+ I ++ +II +I ++ +I+ +++ + + III I ++ I + I + ++ +
Sbjct: 315 IMRIFLLQGLIIGLIGALLGVILGVLLALNLNSIIIFIEPLLGHTFGISTLPIELSLLDV 374
Query: 140 IIIIIIIIIIDLI 152
+++++ +++ L+
Sbjct: 375 VLVLVFALLLSLL 387
Score = 33.4 bits (77), Expect = 0.37
Identities = 20/117 (17%), Positives = 50/117 (42%), Gaps = 26/117 (22%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIII--------------------------IIII 103
+ K +II+++II++ II + +++ +II
Sbjct: 267 LEKTIMFIILVLIILVAAFNIISSLTMLVKEKTREIAILRAMGASPSHIMRIFLLQGLII 326
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+I ++ +I+ +++ + + III I ++ I + I + ++D++ F L
Sbjct: 327 GLIGALLGVILGVLLALNLNSIIIFIEPLLGHTFGISTLPIELSLLDVVLVLVFALL 383
>gnl|CDD|224187 COG1268, BioY, Uncharacterized conserved protein [General function
prediction only].
Length = 184
Score = 38.0 bits (89), Expect = 0.006
Identities = 9/83 (10%), Positives = 37/83 (44%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ + ++ + I++ + ++ +I+I ++ I+ + ++I + ++ ++ I I
Sbjct: 101 LIGLLAEKIRKRNGFILLFLALLAGLIVIYLLGILWLALVIGLSSKAALLGVLPFIPGDI 160
Query: 126 IIIIIIIIIIIIIIIIIIIIIII 148
I + +I + + +
Sbjct: 161 IKAALAALIARALKARLPKHRLF 183
Score = 34.5 bits (80), Expect = 0.092
Identities = 10/70 (14%), Positives = 32/70 (45%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I++ + ++ +I+I ++ I+ + ++I + ++ ++ I II + +I +
Sbjct: 115 FILLFLALLAGLIVIYLLGILWLALVIGLSSKAALLGVLPFIPGDIIKAALAALIARALK 174
Query: 144 IIIIIIDLIF 153
+ L
Sbjct: 175 ARLPKHRLFR 184
Score = 33.0 bits (76), Expect = 0.29
Identities = 10/70 (14%), Positives = 33/70 (47%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I++ + ++ +I+I ++ I+ + ++I + ++ ++ I II + +I +
Sbjct: 115 FILLFLALLAGLIVIYLLGILWLALVIGLSSKAALLGVLPFIPGDIIKAALAALIARALK 174
Query: 145 IIIIIDLIFD 154
+ +F
Sbjct: 175 ARLPKHRLFR 184
>gnl|CDD|150313 pfam09605, Trep_Strep, Hypothetical bacterial integral membrane
protein (Trep_Strep). This family consists of strongly
hydrophobic proteins about 190 amino acids in length
with a strongly basic motif near the C-terminus. It is
found in rather few species, but in paralogous families
of 12 members in the oral pathogenic spirochaete
Treponema denticola and 2 in Streptococcus pneumoniae
R6.
Length = 186
Score = 38.0 bits (89), Expect = 0.006
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------II 126
K +I I I + +I+ I ++ I + +++ I ++ II ++++ I
Sbjct: 3 KDLITIGIFAALYFVIVFIGGMLGAINPVFMLLAPAITALLGGIIFMLLVAKVPKFGAIT 62
Query: 127 IIIIIIIIIIII-------IIIIIIIIIIIDLI 152
I+ III ++ + +I+ II +I DLI
Sbjct: 63 IMGIIIGLLFFLTGHGWPMLILSIIGGLIADLI 95
Score = 32.2 bits (74), Expect = 0.56
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIII 127
Y +I+ I ++ I + +++ I ++ II ++++ I I+ III ++ +
Sbjct: 15 YFVIVFIGGMLGAINPVFMLLAPAITALLGGIIFMLLVAKVPKFGAITIMGIIIGLLFFL 74
Query: 128 ----IIIIIIIIIIIIIIIIII 145
++I+ II +I +I
Sbjct: 75 TGHGWPMLILSIIGGLIADLIA 96
>gnl|CDD|217379 pfam03125, Sre, C. elegans Sre G protein-coupled chemoreceptor.
Caenorhabditis elegans Sre proteins are candidate
chemosensory receptors. There are four main recognised
groups of such receptors: Odr-10, Sra, Sro, and Srg. Sre
(this family), Sra pfam02117 and Srb pfam02175 comprise
the Sra group. All of the above receptors are thought to
be G protein-coupled seven transmembrane domain
proteins. The existence of several different
chemosensory receptors underlies the fact that in spite
of having only 20-30 chemosensory neurones, C. elegans
detects hundreds of different chemicals, with the
ability to discern individual chemicals among
combinations.
Length = 363
Score = 39.2 bits (92), Expect = 0.007
Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 37/118 (31%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--- 128
K+S+ I +I+III + I + + + ++ I++ II II +I+ + I
Sbjct: 159 KKSRIWIPVILIIISQFLAISSALFFLFNKLPVLFIVLPWIICNIISVIVYLFIRRYNQK 218
Query: 129 ----------------------------------IIIIIIIIIIIIIIIIIIIIIDLI 152
++ +++ II++ I+ + DLI
Sbjct: 219 WYKEIENPRRKRNYTLSQRFQVKENLKALKLGKRLVFVVLFIIVLCGSGILALSFDLI 276
Score = 37.3 bits (87), Expect = 0.025
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
I I +I+III + I + + + ++ I++ II II +I+ I + + KE
Sbjct: 163 IWIPVILIIISQFLAISSALFFLFNKLPVLFIVLPWIICNIISVIVYLFIRRYNQKWYKE 222
Query: 163 FRVEQCP 169
+
Sbjct: 223 IENPRRK 229
Score = 36.5 bits (85), Expect = 0.038
Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 37/113 (32%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------- 132
I I +I+III + I + + + ++ I++ II II +I+ + I
Sbjct: 163 IWIPVILIIISQFLAISSALFFLFNKLPVLFIVLPWIICNIISVIVYLFIRRYNQKWYKE 222
Query: 133 ------------------------------IIIIIIIIIIIIIIIIIDLIFDF 155
++ +++ II++ I+ L FD
Sbjct: 223 IENPRRKRNYTLSQRFQVKENLKALKLGKRLVFVVLFIIVLCGSGILALSFDL 275
Score = 29.6 bits (67), Expect = 6.1
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIII 131
+++ I ++ I+ I+ + + +I+ I + + I+ I + I +II II I
Sbjct: 25 QLLLSIFELLFYILCAYIVFVSLYVILKIRLFHKNLTILFIPLFGIWFELIIGKIITIAY 84
Query: 132 IIIIIIIIIIIIIIIIIID 150
+ + IIII+ I
Sbjct: 85 RLGLSIIIIVEIGEHTQFW 103
>gnl|CDD|225786 COG3247, HdeD, Uncharacterized conserved protein [Function
unknown].
Length = 185
Score = 38.0 bits (89), Expect = 0.007
Identities = 19/107 (17%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-- 122
++ F + +++ I+ I++ I+ + +++ +I I I I+ I+
Sbjct: 63 IISAFGNRSDNSFWPLLLSGILSILLGILAGFNPGLGALVLTYLIAIWFIASGILRIVVA 122
Query: 123 ----------IIIIIIIIIIIIIIIII------IIIIIIIIIIDLIF 153
+II ++ II +I++ I+ +++ I+LIF
Sbjct: 123 FRLRSLPGWWWMIISGVLGIIAGLILLFNPVASAWILGLLLGIELIF 169
Score = 34.9 bits (81), Expect = 0.080
Identities = 17/98 (17%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------------IIII 118
+++II+ ++ + I + ++ ++ I+++I II II I+ I
Sbjct: 27 VLLIILGLLALFNPAISTVALVYVVGILLLISGIIEIISAFGNRSDNSFWPLLLSGILSI 86
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
++ I+ + +++ +I I I I+ ++ F
Sbjct: 87 LLGILAGFNPGLGALVLTYLIAIWFIASGILRIVVAFR 124
>gnl|CDD|223939 COG1007, NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N)
[Energy production and conversion].
Length = 475
Score = 39.2 bits (92), Expect = 0.008
Identities = 11/96 (11%), Positives = 42/96 (43%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
II+ I ++++++ + I ++ + ++ ++ + ++ I I+ + +
Sbjct: 12 IILAITALVLLLVGLFIRRSRSLLAYLAVLGLLAALASLLFIAYRGSAFAGAFIVDALAL 71
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFL 172
++ I++++ + ++ F+ E L L
Sbjct: 72 LMKIVVLLASLAALILSLPYLERAGTFKGEFYALLL 107
Score = 33.4 bits (77), Expect = 0.48
Identities = 6/48 (12%), Positives = 27/48 (56%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ +++ II+ I ++++++ + I ++ + ++ ++ + L+F
Sbjct: 5 LSLLLPEIILAITALVLLLVGLFIRRSRSLLAYLAVLGLLAALASLLF 52
>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit. This
family consists of the oligosaccharyl transferase STT3
subunit and related proteins. The STT3 subunit is part
of the oligosaccharyl transferase (OTase) complex of
proteins and is required for its activity. In
eukaryotes, OTase transfers a lipid-linked
core-oligosaccharide to selected asparagine residues in
the ER. In the archaea STT3 occurs alone, rather than in
an OTase complex, and is required for N-glycosylation of
asparagines.
Length = 650
Score = 39.3 bits (92), Expect = 0.008
Identities = 14/117 (11%), Positives = 45/117 (38%), Gaps = 13/117 (11%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIII 107
++L ++ S II ++ + + ++ + ++I+ ++ I+ ++I
Sbjct: 153 AIFLPLLVLFFWLLAIKTGSNRIIYAVLAGLPLFLMALAWGGYQVFLLILALLFILALLI 212
Query: 108 ------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
++I++ +I I+ II + + + + ++ L F
Sbjct: 213 MGRFEPKLLILVGFSYLIATIVGGIIQYLFVGFAKVRSSEHMGAFLVFGLAQLLAFG 269
Score = 30.8 bits (70), Expect = 3.0
Identities = 12/94 (12%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 69 FVRKRSKYIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
I II+I + +I + +I +++ + + I +
Sbjct: 320 LFDYAKIDIPTIILISEWQPTGLYALLAGLRFLIFTFPLGLIFCGLLLEDLAVFSFIYSV 379
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+ + +++ I++ + +I +I + IF
Sbjct: 380 SQLRFLGVMVFPIMLTLAPVIALIAAYLASPIFS 413
>gnl|CDD|222319 pfam13687, DUF4153, Domain of unknown function (DUF4153). Members
of this family are annotated as putative inner membrane
proteins.
Length = 216
Score = 37.9 bits (89), Expect = 0.008
Identities = 11/94 (11%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIII 119
++ F+ S+ + + + +++I +++++ I I I + ++++ I
Sbjct: 107 LLLIYFLLYLSEDKWLRLFLRYFPLLLIPLLVLLFYAIWIRISQYGLTEERYYLLLLAIW 166
Query: 120 IIIIIIIIII---IIIIIIIIIIIIIIIIIIIID 150
++I+I+ ++ I + + I++++ + ++
Sbjct: 167 LLIVIVYLLFRKKQRWIPLSLSILLLLSSVGPLN 200
Score = 36.8 bits (86), Expect = 0.020
Identities = 12/99 (12%), Positives = 46/99 (46%), Gaps = 19/99 (19%)
Query: 76 YIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIII----------IIII 119
YI ++++I ++ + + + +++I +++++ I I I +++
Sbjct: 103 YIALLLLIYFLLYLSEDKWLRLFLRYFPLLLIPLLVLLFYAIWIRISQYGLTEERYYLLL 162
Query: 120 IIIIIIIIIIIIII---IIIIIIIIIIIIIIIIDLIFDF 155
+ I ++I+I+ ++ I + + I++++ +
Sbjct: 163 LAIWLLIVIVYLLFRKKQRWIPLSLSILLLLSSVGPLNA 201
Score = 31.4 bits (72), Expect = 1.4
Identities = 12/96 (12%), Positives = 42/96 (43%), Gaps = 20/96 (20%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIII 120
+ Y +I I++ +++I +I+ + I+I +++ I ++++I
Sbjct: 51 REIDYPKRFKTLIKYILLPLLLIYTLILYLYAAKILITWELPVGWVSWLVLFYIALLLLI 110
Query: 121 IIII---------IIIIIIIIIIIIIIIIIIIIIII 147
++ + + +++I +++++ I I
Sbjct: 111 YFLLYLSEDKWLRLFLRYFPLLLIPLLVLLFYAIWI 146
Score = 29.8 bits (68), Expect = 3.3
Identities = 14/102 (13%), Positives = 44/102 (43%), Gaps = 21/102 (20%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------IIIIII 117
+ KR + I +I I++ +++I +I+ + I+I +++ I
Sbjct: 45 LLPKRDREIDYPKRFKTLIKYILLPLLLIYTLILYLYAAKILITWELPVGWVSWLVLFYI 104
Query: 118 IIIIIIIIII----------IIIIIIIIIIIIIIIIIIIIII 149
++++I ++ + +++I +++++ I I
Sbjct: 105 ALLLLIYFLLYLSEDKWLRLFLRYFPLLLIPLLVLLFYAIWI 146
>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 657
Score = 38.9 bits (91), Expect = 0.009
Identities = 16/116 (13%), Positives = 55/116 (47%), Gaps = 26/116 (22%)
Query: 53 DKILYLQTA---TKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIII--------III- 100
+++ YL + E R+ + II I+ III++++I+ + ++ I+I
Sbjct: 526 EEVSYLVNYKDSYLTDLNETQRELTVLIIGAILTIIILLLLILFMNVLYFEQFRKKILIK 585
Query: 101 --------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ + +++ ++++ I+ +I ++++ + ++ ++I+++
Sbjct: 586 RLYGYSFFRAHRKYLFAQLGVLVFLLVLTAILQRDSLIALLVLALFLLEQLLILLV 641
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 38.5 bits (88), Expect = 0.009
Identities = 8/97 (8%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
KRS + + +++ + + ++ + +++ + + ++ +++ + I ++
Sbjct: 1 KRSLLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAG 60
Query: 132 II--------IIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ ++II +++ ++ +++ L + L
Sbjct: 61 PLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALL 97
Score = 34.7 bits (78), Expect = 0.16
Identities = 4/77 (5%), Positives = 33/77 (42%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ +++ + + ++ +++ + I ++ + ++II +++ ++
Sbjct: 23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLG 82
Query: 137 IIIIIIIIIIIIIDLIF 153
+++ + + + L+
Sbjct: 83 TLLLALAPNVGLALLLI 99
Score = 34.3 bits (77), Expect = 0.23
Identities = 4/88 (4%), Positives = 33/88 (37%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
R + +++ + + ++ + +++ + + ++ +++ + I ++
Sbjct: 2 RSLLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGP 61
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+ ++II +++ +
Sbjct: 62 LGDRYGRRKVLIIGLLLFLLGTLLLALA 89
>gnl|CDD|216181 pfam00902, TatC, Sec-independent protein translocase protein
(TatC). The bacterial Tat system has a remarkable
ability to transport folded proteins even enzyme
complexes across the cytoplasmic membrane. It is
structurally and mechanistically similar to the Delta
pH-driven thylakoidal protein import pathway. A
functional Tat system or Delta pH-dependent pathway
requires three integral membrane proteins: TatA/Tha4,
TatB/Hcf106 and TatC/cpTatC. The TatC protein is
essential for the function of both pathways. It might be
involved in twin-arginine signal peptide recognition,
protein translocation and proton translocation. Sequence
analysis predicts that TatC contains six transmembrane
helices (TMHs), and experimental data confirmed that N-
and C-termini of TatC or cpTatC are exposed to the
cytoplasmic or stromal face of the membrane. The
cytoplasmic N-terminus and the first cytoplasmic loop
region of the Escherichia coli TatC protein are
essential for protein export. At least two TatC
molecules co-exist within each Tat translocon.
Length = 212
Score = 37.9 bits (89), Expect = 0.009
Identities = 16/79 (20%), Positives = 32/79 (40%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
RKR Y +I I+ II II+ ++ ++ + +I + + +
Sbjct: 8 RKRLIYSLIAFILGFIICYFFSEEIILFLLAPLLNALPPNSKLIYTSPTEAFFTYLKLSL 67
Query: 131 IIIIIIIIIIIIIIIIIII 149
+I+ + II+ I I
Sbjct: 68 FAGLILALPIILYQIWAFI 86
Score = 31.3 bits (72), Expect = 1.2
Identities = 8/96 (8%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---IIIIII 128
K + ++ + ++ ++ +++ I + ++ I I + ++
Sbjct: 92 KNERRFLLPFVFASFLLFLLGAAFAYFVVLPIALKFLLGFGPEGIEPQPSISEYLSFVLR 151
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
+++ ++ + +I++++ + ++ T +L++ R
Sbjct: 152 LLLAFGLLFELPVILVLLAKLGIV---TPEFLRKNR 184
Score = 30.5 bits (70), Expect = 2.5
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
+I +I I+ II II+ ++ ++ + +I + F YLK
Sbjct: 11 LIYSLIAFILGFIICYFFSEEIILFLLAPLLNALPPNSKLIYTSPTEAFFTYLK 64
Score = 30.2 bits (69), Expect = 2.5
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIID 150
+I +I I+ II II+ ++ ++ + +I + + +
Sbjct: 11 LIYSLIAFILGFIICYFFSEEIILFLLAPLLNALPPNSKLIYTSPTEAFFTYLKLSLFAG 70
Query: 151 LIF 153
LI
Sbjct: 71 LIL 73
Score = 28.6 bits (65), Expect = 10.0
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPL 170
+I +I I+ II + I F L L
Sbjct: 11 LIYSLIAFILGFIICYFFSEEIILFLLAPLLNALPPNSKL 50
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 38.4 bits (90), Expect = 0.011
Identities = 4/70 (5%), Positives = 42/70 (60%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ ++++ ++++I+++ +++ ++ +++ I +++++ ++ + +I + + +
Sbjct: 2 MTSLMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPEL 61
Query: 137 IIIIIIIIII 146
+++ + I++
Sbjct: 62 FLVLFLAILL 71
Score = 38.4 bits (90), Expect = 0.011
Identities = 4/70 (5%), Positives = 42/70 (60%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ ++++ ++++I+++ +++ ++ +++ I +++++ ++ + +I + + +
Sbjct: 2 MTSLMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPEL 61
Query: 138 IIIIIIIIII 147
+++ + I++
Sbjct: 62 FLVLFLAILL 71
Score = 38.4 bits (90), Expect = 0.011
Identities = 4/70 (5%), Positives = 42/70 (60%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ ++++ ++++I+++ +++ ++ +++ I +++++ ++ + +I + + +
Sbjct: 2 MTSLMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPEL 61
Query: 139 IIIIIIIIII 148
+++ + I++
Sbjct: 62 FLVLFLAILL 71
Score = 38.4 bits (90), Expect = 0.011
Identities = 4/70 (5%), Positives = 42/70 (60%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ ++++ ++++I+++ +++ ++ +++ I +++++ ++ + +I + + +
Sbjct: 2 MTSLMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPEL 61
Query: 140 IIIIIIIIII 149
+++ + I++
Sbjct: 62 FLVLFLAILL 71
Score = 38.0 bits (89), Expect = 0.017
Identities = 5/70 (7%), Positives = 41/70 (58%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ ++++ ++++I+++ +++ ++ +++ I +++++ ++ + +I + + +
Sbjct: 2 MTSLMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPEL 61
Query: 142 IIIIIIIIDL 151
+++ + I L
Sbjct: 62 FLVLFLAILL 71
Score = 37.7 bits (88), Expect = 0.021
Identities = 4/71 (5%), Positives = 41/71 (57%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++++ ++++I+++ +++ ++ +++ I +++++ ++ + +I + +
Sbjct: 1 MMTSLMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPE 60
Query: 134 IIIIIIIIIII 144
+ +++ + I++
Sbjct: 61 LFLVLFLAILL 71
Score = 36.9 bits (86), Expect = 0.030
Identities = 5/72 (6%), Positives = 42/72 (58%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ ++++ ++++I+++ +++ ++ +++ I +++++ ++ + +I + + +
Sbjct: 2 MTSLMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPEL 61
Query: 143 IIIIIIIDLIFD 154
+++ + L+F
Sbjct: 62 FLVLFLAILLFA 73
Score = 35.0 bits (81), Expect = 0.14
Identities = 5/65 (7%), Positives = 37/65 (56%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ ++++ ++++I+++ +++ ++ +++ I +++++ ++ + +I + + +
Sbjct: 2 MTSLMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPEL 61
Query: 153 FDFTF 157
F F
Sbjct: 62 FLVLF 66
Score = 33.4 bits (77), Expect = 0.45
Identities = 5/66 (7%), Positives = 37/66 (56%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+ ++++ ++++I+++ +++ ++ +++ I +++++ ++ + +I +
Sbjct: 2 MTSLMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPEL 61
Query: 155 FTFMYL 160
F ++L
Sbjct: 62 FLVLFL 67
Score = 33.4 bits (77), Expect = 0.46
Identities = 1/65 (1%), Positives = 33/65 (50%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
++ ++ ++ +++ + + +++ + ++ +++ ++ +++ + + + + +
Sbjct: 282 VLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDP 341
Query: 158 MYLKE 162
+ +E
Sbjct: 342 LPWRE 346
Score = 31.1 bits (71), Expect = 2.0
Identities = 2/62 (3%), Positives = 31/62 (50%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
R R ++ ++ ++ +++ + + +++ + ++ +++ ++ +++ + + + +
Sbjct: 272 ARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSL 331
Query: 130 II 131
Sbjct: 332 KG 333
Score = 31.1 bits (71), Expect = 2.2
Identities = 1/61 (1%), Positives = 33/61 (54%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
++ ++ ++ +++ + + +++ + ++ +++ ++ +++ + + + + + + D
Sbjct: 282 VLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDP 341
Query: 152 I 152
+
Sbjct: 342 L 342
Score = 30.7 bits (70), Expect = 2.6
Identities = 3/73 (4%), Positives = 34/73 (46%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
E VR + + ++ ++ ++ +++ + + +++ + ++ +++ ++ ++
Sbjct: 261 EAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVL 320
Query: 128 IIIIIIIIIIIII 140
+ + + + +
Sbjct: 321 LARPLWVFLSLKG 333
Score = 30.3 bits (69), Expect = 3.6
Identities = 0/61 (0%), Positives = 31/61 (50%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
++ ++ ++ +++ + + +++ + ++ +++ ++ +++ + + + + + +
Sbjct: 282 VLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDP 341
Query: 153 F 153
Sbjct: 342 L 342
Score = 30.3 bits (69), Expect = 4.0
Identities = 8/98 (8%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------- 117
R I +++++ ++ + +I + + + +++ + I++
Sbjct: 27 RLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRV 86
Query: 118 --IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I+++ + +++I + I ++ ++ I + +
Sbjct: 87 WRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLL 124
Score = 30.3 bits (69), Expect = 4.1
Identities = 3/60 (5%), Positives = 31/60 (51%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+ ++++ ++++I+++ +++ ++ +++ I +++++ ++ + E
Sbjct: 2 MTSLMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPEL 61
Score = 30.0 bits (68), Expect = 4.5
Identities = 0/52 (0%), Positives = 29/52 (55%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
++ ++ ++ +++ + + +++ + ++ +++ ++ +++ + + + +
Sbjct: 282 VLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKG 333
Score = 30.0 bits (68), Expect = 4.5
Identities = 0/52 (0%), Positives = 29/52 (55%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++ ++ ++ +++ + + +++ + ++ +++ ++ +++ + + + +
Sbjct: 282 VLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKG 333
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 38.9 bits (91), Expect = 0.011
Identities = 17/111 (15%), Positives = 46/111 (41%), Gaps = 23/111 (20%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIII-----------------------IIIIIIIIII 105
F RK I+II ++ I+ I+ ++ ++++I ++
Sbjct: 774 FNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAFTVLVLIQLL 833
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+ + + + ++ + + +++III+ ++II + + IF T
Sbjct: 834 LTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884
Score = 36.2 bits (84), Expect = 0.078
Identities = 10/88 (11%), Positives = 40/88 (45%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++++I +++ + + + ++ + + +++III+ ++II + + + I
Sbjct: 825 TVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
+ + +I I + L+ + +
Sbjct: 885 PLSLFEWLIAIAVALLLLYIVVSELYKL 912
Score = 35.8 bits (83), Expect = 0.11
Identities = 2/68 (2%), Positives = 29/68 (42%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ + ++++ +++ ++ ++ + ++ + + + + + + ++ I + +
Sbjct: 265 LNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALAL 324
Query: 147 IIIDLIFD 154
+ D
Sbjct: 325 GAQRMAKD 332
Score = 35.4 bits (82), Expect = 0.12
Identities = 11/104 (10%), Positives = 41/104 (39%), Gaps = 23/104 (22%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------- 126
K+I+ ++ + ++ ++I + + + + + ++ I ++ + + + +
Sbjct: 702 KKFILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDV 761
Query: 127 ----------------IIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
I I+II ++ I+ I+ ++ L+
Sbjct: 762 MKRPPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGF 805
Score = 34.6 bits (80), Expect = 0.20
Identities = 8/87 (9%), Positives = 37/87 (42%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++ ++++I +++ + + + ++ + + +++III+ ++II +
Sbjct: 814 LFQALLQTTAFTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFL 873
Query: 134 IIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ + I + + + + L
Sbjct: 874 PPLNLKIFQPTPLSLFEWLIAIAVALL 900
Score = 34.2 bits (79), Expect = 0.26
Identities = 10/90 (11%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------ 124
++++I +++ + + + ++ + + +++III+ ++II +
Sbjct: 826 VLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTP 885
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+ + +I I + ++++ I++ + L
Sbjct: 886 LSLFEWLIAIAVALLLLYIVVSELYKLKSR 915
Score = 33.8 bits (78), Expect = 0.34
Identities = 1/62 (1%), Positives = 28/62 (45%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ + + ++++ +++ ++ ++ + ++ + + + + + + ++ I +
Sbjct: 263 RKLNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIAL 322
Query: 135 II 136
+
Sbjct: 323 AL 324
Score = 33.5 bits (77), Expect = 0.52
Identities = 1/60 (1%), Positives = 27/60 (45%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ + ++++ +++ ++ ++ + ++ + + + + + + ++ I + +
Sbjct: 265 LNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALAL 324
Score = 33.5 bits (77), Expect = 0.52
Identities = 1/60 (1%), Positives = 27/60 (45%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ + ++++ +++ ++ ++ + ++ + + + + + + ++ I + +
Sbjct: 265 LNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALAL 324
Score = 33.5 bits (77), Expect = 0.52
Identities = 1/60 (1%), Positives = 27/60 (45%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ + ++++ +++ ++ ++ + ++ + + + + + + ++ I + +
Sbjct: 265 LNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALAL 324
Score = 33.5 bits (77), Expect = 0.52
Identities = 1/60 (1%), Positives = 27/60 (45%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ + ++++ +++ ++ ++ + ++ + + + + + + ++ I + +
Sbjct: 265 LNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALAL 324
Score = 33.5 bits (77), Expect = 0.52
Identities = 1/60 (1%), Positives = 27/60 (45%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ + ++++ +++ ++ ++ + ++ + + + + + + ++ I + +
Sbjct: 265 LNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALAL 324
Score = 33.5 bits (77), Expect = 0.52
Identities = 1/60 (1%), Positives = 27/60 (45%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ + ++++ +++ ++ ++ + ++ + + + + + + ++ I + +
Sbjct: 265 LNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALAL 324
Score = 33.5 bits (77), Expect = 0.52
Identities = 1/60 (1%), Positives = 27/60 (45%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ + ++++ +++ ++ ++ + ++ + + + + + + ++ I + +
Sbjct: 265 LNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALAL 324
Score = 33.5 bits (77), Expect = 0.52
Identities = 1/60 (1%), Positives = 27/60 (45%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ + ++++ +++ ++ ++ + ++ + + + + + + ++ I + +
Sbjct: 265 LNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALAL 324
Score = 33.5 bits (77), Expect = 0.52
Identities = 1/60 (1%), Positives = 27/60 (45%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+ + ++++ +++ ++ ++ + ++ + + + + + + ++ I + +
Sbjct: 265 LNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALAL 324
Score = 32.7 bits (75), Expect = 0.79
Identities = 1/62 (1%), Positives = 28/62 (45%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
++ + ++++ +++ ++ ++ + ++ + + + + + + ++ I +
Sbjct: 263 RKLNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIAL 322
Query: 132 II 133
+
Sbjct: 323 AL 324
Score = 32.7 bits (75), Expect = 0.85
Identities = 12/88 (13%), Positives = 42/88 (47%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++I +++ + + + ++ + + +++III+ ++II + + + I +
Sbjct: 828 VLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLS 887
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
+ +I I + ++ L + +Y + R
Sbjct: 888 LFEWLIAIAVALLLLYIVVSELYKLKSR 915
Score = 32.3 bits (74), Expect = 1.1
Identities = 11/71 (15%), Positives = 37/71 (52%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
RS+ + ++ + + +++III+ ++II + + + I + + +I I +
Sbjct: 839 RSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAIAVA 898
Query: 133 IIIIIIIIIII 143
++++ I++ +
Sbjct: 899 LLLLYIVVSEL 909
Score = 31.9 bits (73), Expect = 1.6
Identities = 4/65 (6%), Positives = 29/65 (44%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
RK +K ++++ +++ ++ ++ + ++ + + + + + + ++
Sbjct: 260 PLQRKLNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVT 319
Query: 128 IIIII 132
I + +
Sbjct: 320 IALAL 324
Score = 31.5 bits (72), Expect = 1.9
Identities = 10/76 (13%), Positives = 37/76 (48%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ + + ++ + + +++III+ ++II + + + I + + +I
Sbjct: 834 LTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLI 893
Query: 136 IIIIIIIIIIIIIIDL 151
I + ++++ I++ +L
Sbjct: 894 AIAVALLLLYIVVSEL 909
Score = 29.6 bits (67), Expect = 7.2
Identities = 5/44 (11%), Positives = 22/44 (50%)
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
I+ ++ + ++ ++I + + + + + ++ I+L+ D
Sbjct: 704 FILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSL 747
Score = 29.6 bits (67), Expect = 7.6
Identities = 9/75 (12%), Positives = 35/75 (46%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ ++ + + +++III+ ++II + + + I + + +I I + +
Sbjct: 840 SRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAIAVAL 899
Query: 136 IIIIIIIIIIIIIID 150
+++ I++ + +
Sbjct: 900 LLLYIVVSELYKLKS 914
>gnl|CDD|226692 COG4241, COG4241, Predicted membrane protein [Function unknown].
Length = 314
Score = 38.2 bits (89), Expect = 0.011
Identities = 15/85 (17%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIII 130
Y+I++ + ++ + I ++++ +++ I + +I + +I++I+
Sbjct: 221 YLIVVCLELLWKYENGQVTYSIYWNFLMVLGLLLAIQGLSVIFFYLKAKGLPNAVIVLIL 280
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDF 155
I+ II+ ++ ++ ++ +IDL FD
Sbjct: 281 ILGIILTPLLYLVRLLGVIDLGFDL 305
>gnl|CDD|227120 COG4781, COG4781, Membrane domain of membrane-anchored
glycerophosphoryl diester phosphodiesterase [Energy
production and conversion].
Length = 340
Score = 38.1 bits (89), Expect = 0.012
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIII--------------------IIII 107
E + K + ++I+ + +I I + +I + +II+ +
Sbjct: 159 EELMKTTWGWWLLILFLALIFYISVRLIFALPLIILDQLTVREAIRESWKKTKKNVFFLA 218
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
+ +I++ II+++ +II I++ ++ I +I+ II + +I++ F L F V
Sbjct: 219 WKLFLILLKIILLLSLIISGILLAQDLVDKIGEALIVAIINLVVIWNLYFFALTFFLV 276
Score = 36.6 bits (85), Expect = 0.042
Identities = 12/73 (16%), Positives = 40/73 (54%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K++ + + + +I++ II+++ +II I++ ++ I +I+ II +++I +
Sbjct: 211 KKNVFFLAWKLFLILLKIILLLSLIISGILLAQDLVDKIGEALIVAIINLVVIWNLYFFA 270
Query: 132 IIIIIIIIIIIII 144
+ ++ + ++
Sbjct: 271 LTFFLVKLASFLV 283
Score = 35.5 bits (82), Expect = 0.080
Identities = 15/109 (13%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIII 123
K +++ II+ +I+ + + I+ + I ++++++ ++ ++
Sbjct: 21 DKILLLFQIIVEFVIVPFLSWLFSFILDVTGQPFISYNNVGEILSHPPLVLLLLALLFLL 80
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFL 172
++++ + ++ + I ++ I IF +F++LK+ Q F+
Sbjct: 81 LLLVYLEFGLLFYMAIALLYNEIYTFRKIFHESFVFLKKLTGYQLLFFV 129
Score = 35.5 bits (82), Expect = 0.086
Identities = 12/76 (15%), Positives = 40/76 (52%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ +K ++ + +I++ II+++ +II I++ ++ I +I+ II +++I +
Sbjct: 208 KKTKKNVFFLAWKLFLILLKIILLLSLIISGILLAQDLVDKIGEALIVAIINLVVIWNLY 267
Query: 128 IIIIIIIIIIIIIIII 143
+ ++ + ++
Sbjct: 268 FFALTFFLVKLASFLV 283
Score = 34.7 bits (80), Expect = 0.17
Identities = 13/76 (17%), Positives = 41/76 (53%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K++K + + + +I++ II+++ +II I++ ++ I +I+ II +++I +
Sbjct: 208 KKTKKNVFFLAWKLFLILLKIILLLSLIISGILLAQDLVDKIGEALIVAIINLVVIWNLY 267
Query: 132 IIIIIIIIIIIIIIII 147
+ ++ + ++
Sbjct: 268 FFALTFFLVKLASFLV 283
Score = 34.3 bits (79), Expect = 0.18
Identities = 15/82 (18%), Positives = 42/82 (51%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+K K + + + +I++ II+++ +II I++ ++ I +I+ II +++I +
Sbjct: 208 KKTKKNVFFLAWKLFLILLKIILLLSLIISGILLAQDLVDKIGEALIVAIINLVVIWNLY 267
Query: 131 IIIIIIIIIIIIIIIIIIIDLI 152
+ ++ + ++ DL
Sbjct: 268 FFALTFFLVKLASFLVGEADLE 289
Score = 33.1 bits (76), Expect = 0.42
Identities = 11/67 (16%), Positives = 35/67 (52%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ +I++ II+++ +II I++ ++ I +I+ II +++I + + ++ +
Sbjct: 221 LFLILLKIILLLSLIISGILLAQDLVDKIGEALIVAIINLVVIWNLYFFALTFFLVKLAS 280
Query: 147 IIIDLIF 153
++
Sbjct: 281 FLVGEAD 287
Score = 33.1 bits (76), Expect = 0.52
Identities = 14/91 (15%), Positives = 44/91 (48%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
IL T + + + + + + + +I++ II+++ +II I++ ++ I
Sbjct: 193 ILDQLTVREAIRESWKKTKKNVFFLAWKLFLILLKIILLLSLIISGILLAQDLVDKIGEA 252
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+I+ II +++I + + ++ + ++
Sbjct: 253 LIVAIINLVVIWNLYFFALTFFLVKLASFLV 283
Score = 32.4 bits (74), Expect = 0.81
Identities = 14/71 (19%), Positives = 37/71 (52%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+ +I++ II+++ +II I++ ++ I +I+ II +++I + + L+ +
Sbjct: 221 LFLILLKIILLLSLIISGILLAQDLVDKIGEALIVAIINLVVIWNLYFFALTFFLVKLAS 280
Query: 157 FMYLKEFRVEQ 167
F+ + E
Sbjct: 281 FLVGEADLEEL 291
>gnl|CDD|211933 TIGR04210, bunya_NSm, bunyavirus nonstructural protein NSm. This
model describes a protein region that is cleaved from a
bunyavirus polyprotein to become the nonstructural
protein NSm (encoded by the M segment). It is flanked by
glycoprotein GP2 and glycoprotein GP1.
Length = 173
Score = 36.9 bits (86), Expect = 0.012
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
I I II I +++II+I++ ++ II L+ +++ E
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYVFCAE 100
Score = 33.1 bits (76), Expect = 0.25
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 113
+ I I II I +++II+I++ ++ II +++ I +
Sbjct: 53 EKINIYEQICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.9 bits (73), Expect = 0.54
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 117
+F+ K I I I II I +++II+I++ ++ II +++ I +
Sbjct: 47 DFLGLIEKINIYEQICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.9 bits (73), Expect = 0.55
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 117 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I I II I +++II+I++ ++ II +++ I +F
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYVF 97
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 119
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
I I II I +++II+I++ ++ II +++ I +
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
Score = 28.4 bits (64), Expect = 9.9
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCP 169
I I II I +++II+I+ + + L + C
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKIIHLLLKIYYVFCA 99
Score = 28.4 bits (64), Expect = 10.0
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 57 YLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIII 105
+L K + E + + + I I +++II+I++ ++ II +++ I +
Sbjct: 48 FLGLIEKINIYEQICEINSIITICLLLIILILLYLLNKIIHLLLKIYYV 96
>gnl|CDD|225906 COG3371, COG3371, Predicted membrane protein [Function unknown].
Length = 181
Score = 37.0 bits (86), Expect = 0.012
Identities = 16/70 (22%), Positives = 35/70 (50%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ I+ ++ I ++I I ++ +I I I I + + I+I + + + I
Sbjct: 103 VFVSILFFLLSFIAMLIYSIGRLLRNRSGFGLIAISIGIFSLALFILIKWVGVAVPETIG 162
Query: 136 IIIIIIIIII 145
I++I+I +II
Sbjct: 163 IVLILIWVII 172
Score = 36.2 bits (84), Expect = 0.026
Identities = 16/71 (22%), Positives = 37/71 (52%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++ + I+ ++ I ++I I ++ +I I I I + + I+I + + + I
Sbjct: 102 HVFVSILFFLLSFIAMLIYSIGRLLRNRSGFGLIAISIGIFSLALFILIKWVGVAVPETI 161
Query: 136 IIIIIIIIIII 146
I++I+I +II
Sbjct: 162 GIVLILIWVII 172
Score = 30.0 bits (68), Expect = 3.1
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
R RS + +I I I I + + I+I + + + I I++I+I +II
Sbjct: 127 RNRSGFGLIAISIGIFSLALFILIKWVGVAVPETIGIVLILIWVII 172
Score = 29.7 bits (67), Expect = 3.5
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
R++ +I I I I + + I+I + + + I I++I+I +II
Sbjct: 125 LLRNRSGFGLIAISIGIFSLALFILIKWVGVAVPETIGIVLILIWVII 172
Score = 29.3 bits (66), Expect = 4.5
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ I+ ++ I ++I I ++ +I I I I + + I+I
Sbjct: 104 FVSILFFLLSFIAMLIYSIGRLLRNRSGFGLIAISIGIFSLALFILI 150
Score = 29.3 bits (66), Expect = 4.5
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ I+ ++ I ++I I ++ +I I I I + + I+I
Sbjct: 104 FVSILFFLLSFIAMLIYSIGRLLRNRSGFGLIAISIGIFSLALFILI 150
Score = 29.3 bits (66), Expect = 4.5
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ I+ ++ I ++I I ++ +I I I I + + I+I
Sbjct: 104 FVSILFFLLSFIAMLIYSIGRLLRNRSGFGLIAISIGIFSLALFILI 150
>gnl|CDD|177099 MTH00001, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 99
Score = 35.4 bits (82), Expect = 0.012
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 75 KYIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
KY+I+++I+ ++ I II+ II+++ I ++++ + +I I I ++I I I+
Sbjct: 4 KYLILVVILFLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIM 63
Query: 131 IIIIIIIIIIIIIIIII 147
+ I I + I++
Sbjct: 64 GLTIAAAESAIGLAIMV 80
Score = 32.0 bits (73), Expect = 0.20
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 76 YIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
Y +I+++I+ ++ I II+ II+++ I ++++ + +I I I ++I I I
Sbjct: 3 YKYLILVVILFLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTI 62
Query: 132 IIIIIIIIIIIIIIIIII 149
+ + I I + I++
Sbjct: 63 MGLTIAAAESAIGLAIMV 80
Score = 30.8 bits (70), Expect = 0.57
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 107 IIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD--FTFMYL 160
+I+++I+ ++ I II+ II+++ I ++++ + +I I IDL+ + FT M L
Sbjct: 6 LILVVILFLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGL 65
>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family. This family
includes a range of acyltransferase enzymes. This domain
is found in many as yet uncharacterized C. elegans
proteins and it is approximately 300 amino acids long.
Length = 326
Score = 37.9 bits (88), Expect = 0.012
Identities = 8/121 (6%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------------III 111
+F++KR ++I + ++ ++ +++ + + ++++++ +
Sbjct: 71 KFLKKRLLRLLIPYLFWSLLYFLLGLLVGGLSVYGLLLLLLLLGLLFGGGPNGHLWFLPA 130
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLF 171
+ + +++ +++ ++ + +++++++ +++++ ++ I ++ + + P F
Sbjct: 131 LFVFYLLLPLLLRLLRKLKKLLLLLLLALLLLLSLLYILILLVGLPPTVLNLLIGLLPFF 190
Query: 172 L 172
L
Sbjct: 191 L 191
Score = 35.2 bits (81), Expect = 0.11
Identities = 4/79 (5%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIII 130
+++++ +++++++ +++ + + ++ + I +I I++++ +++++ +
Sbjct: 246 LLLLLLGVLLLLLLALLLANLRSLKRLLKYLGKYSLGIYLIHPPILLLLTKLLLLLPPLG 305
Query: 131 IIIIIIIIIIIIIIIIIII 149
I++ ++ +++ +++ +++
Sbjct: 306 PILLFLLALVLTLLVSLLL 324
Score = 34.0 bits (78), Expect = 0.23
Identities = 6/83 (7%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIII 130
Y ++++++ +++++++ +++ + + ++ + I +I I++++ +++++
Sbjct: 243 YFSLLLLLLGVLLLLLLALLLANLRSLKRLLKYLGKYSLGIYLIHPPILLLLTKLLLLLP 302
Query: 131 IIIIIIIIIIIIIIIIIIIDLIF 153
+ I++ ++ +++ +++ L+
Sbjct: 303 PLGPILLFLLALVLTLLVSLLLA 325
Score = 29.4 bits (66), Expect = 6.9
Identities = 6/48 (12%), Positives = 31/48 (64%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
KY + I +I I++++ +++++ + I++ ++ +++ +++ +++
Sbjct: 277 GKYSLGIYLIHPPILLLLTKLLLLLPPLGPILLFLLALVLTLLVSLLL 324
Score = 29.4 bits (66), Expect = 7.3
Identities = 5/66 (7%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 64 CMVCEFVRKRSKYIIIII--IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
+ + K ++ + + I +I I++++ +++++ + I++ ++ +++ +
Sbjct: 259 LALLLANLRSLKRLLKYLGKYSLGIYLIHPPILLLLTKLLLLLPPLGPILLFLLALVLTL 318
Query: 122 IIIIII 127
++ +++
Sbjct: 319 LVSLLL 324
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
Srw. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srw is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srw do not appear to be
under as strong an adaptive evolutionary pressure as
those of Srz.
Length = 317
Score = 38.0 bits (89), Expect = 0.013
Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 51/169 (30%)
Query: 77 IIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------- 119
II I +II+ I II+I I I II +++ I I II
Sbjct: 11 FIINIFHLIILTRKSMRTSSINIIMIGIAICDIITMLLTIYNFIPEFIISYENSECIPPD 70
Query: 120 ----IIIIIIIIIIIII-------------IIIIIII-----------------IIIIII 145
+++ I+ + I +I +++ +IIIII
Sbjct: 71 SYLKVLLDWILESLQDISRRCSTWLGVFMALIRTLVVKNPMSNKIQKLSKPKFGLIIIII 130
Query: 146 IIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRR 194
+ I+ L F + + E E C P + +
Sbjct: 131 VFILSLPFSIFYYFRYEIVEEGGIWKPPPNCAGFPPNYTEPRYVLVLSE 179
Score = 29.9 bits (68), Expect = 5.1
Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 21/100 (21%)
Query: 73 RSKYIIIIIIIIIIIIIII-------IIIIIIIII--------------IIIIIIIIIII 111
+ K+ +IIIII+ I+ + I+ I ++++
Sbjct: 120 KPKFGLIIIIIVFILSLPFSIFYYFRYEIVEEGGIWKPPPNCAGFPPNYTEPRYVLVLSE 179
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
+ +++ I ++I I+ II I++ I+ I++II+L
Sbjct: 180 LFTDNDGLLLKIYLLIDGIVSKIIPCILLPILTILLIIEL 219
Score = 29.1 bits (66), Expect = 7.5
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ +K +I + I I + I II I +I+ + +I +++ I I
Sbjct: 237 DRTTKLVIFMTISFFIAEFPLGISYIIQFFFYDDPGIRLILTYLSVIFSLLLTINAISHC 296
Query: 131 II 132
+I
Sbjct: 297 LI 298
>gnl|CDD|226458 COG3949, COG3949, Uncharacterized membrane protein [Function
unknown].
Length = 349
Score = 38.1 bits (89), Expect = 0.013
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----- 109
+L+ + M + Y I+ + II IIII + ++++
Sbjct: 47 VLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSL 106
Query: 110 ----------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
I +III++++I++ + + II + II +III++++ L F FT
Sbjct: 107 LEEMFGLPYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIILVLVTLSFQFT 163
Score = 31.9 bits (73), Expect = 1.0
Identities = 11/54 (20%), Positives = 24/54 (44%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
F +R I II++I + I +I + I+ + ++I+ ++ I
Sbjct: 287 SFFPRRYWIIAAIILVIAYPLSFFGFINLIAKLYPILGYVGLLILFAVLYKYPI 340
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 38.4 bits (90), Expect = 0.014
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------------ 117
+I +II +++II+ I + + + + I +
Sbjct: 509 GLIGKYLIIGGVVLIILGEGIDGKSLGGALGGLGLYEITGYLGDVLSYARLMALGLAGAG 568
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I + ++ ++ I +I II+ III I
Sbjct: 569 IAMAFNLMAGLLPPSIGVIGIIVGIIIFIF 598
Score = 38.4 bits (90), Expect = 0.015
Identities = 11/70 (15%), Positives = 37/70 (52%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++I++ I++I++ +++ + + +I +II +++II+ I + + + +
Sbjct: 485 LLILLGILLIVLGGFGLVVGLGPLGLIGKYLIIGGVVLIILGEGIDGKSLGGALGGLGLY 544
Query: 143 IIIIIIIDLI 152
I + D++
Sbjct: 545 EITGYLGDVL 554
Score = 38.4 bits (90), Expect = 0.016
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 21/96 (21%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------ 121
+ +I +II +++II+ I + + + + I +
Sbjct: 503 VGLGPLGLIGKYLIIGGVVLIILGEGIDGKSLGGALGGLGLYEITGYLGDVLSYARLMAL 562
Query: 122 ---------IIIIIIIIIIIIIIIIIIIIIIIIIII 148
++ ++ I +I II+ III I
Sbjct: 563 GLAGAGIAMAFNLMAGLLPPSIGVIGIIVGIIIFIF 598
Score = 37.6 bits (88), Expect = 0.021
Identities = 10/66 (15%), Positives = 34/66 (51%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
++I++ I++I++ +++ + + +I +II +++II+ I + + + L
Sbjct: 485 LLILLGILLIVLGGFGLVVGLGPLGLIGKYLIIGGVVLIILGEGIDGKSLGGALGGLGLY 544
Query: 153 FDFTFM 158
++
Sbjct: 545 EITGYL 550
Score = 37.2 bits (87), Expect = 0.034
Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 40/113 (35%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------------- 121
++I++ I++I++ +++ + + +I +II +++II+ I
Sbjct: 485 LLILLGILLIVLGGFGLVVGLGPLGLIGKYLIIGGVVLIILGEGIDGKSLGGALGGLGLY 544
Query: 122 -IIIII------------------------IIIIIIIIIIIIIIIIIIIIIII 149
I + ++ ++ I +I II+ III I
Sbjct: 545 EITGYLGDVLSYARLMALGLAGAGIAMAFNLMAGLLPPSIGVIGIIVGIIIFI 597
Score = 37.2 bits (87), Expect = 0.034
Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 43/114 (37%)
Query: 79 IIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIII----------IIIIIIIII 119
++I++ I++I++ + +I +II +++II+ + + +
Sbjct: 485 LLILLGILLIVLGGFGLVVGLGPLGLIGKYLIIGGVVLIILGEGIDGKSLGGALGGLGLY 544
Query: 120 IIIIII------------------------IIIIIIIIIIIIIIIIIIIIIIII 149
I + ++ ++ I +I II+ III I
Sbjct: 545 EITGYLGDVLSYARLMALGLAGAGIAMAFNLMAGLLPPSIGVIGIIVGIIIFIF 598
Score = 36.8 bits (86), Expect = 0.042
Identities = 15/99 (15%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIII 124
++ I+II ++I +I + + +++ I + ++I++ I++I++ +
Sbjct: 442 VMTILIISLLIGVIHLFLGLLLGFINNVRKGDYKDAFLAQLGWLLILLGILLIVLGGFGL 501
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
++ + + +I +II +++II+ + I +
Sbjct: 502 VVGLGPLGLIGKYLIIGGVVLIILGEGIDGKSLGGALGG 540
Score = 36.4 bits (85), Expect = 0.055
Identities = 17/114 (14%), Positives = 45/114 (39%), Gaps = 36/114 (31%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------IIIIIII 123
+I++ I++I++ +++ + + +I +II +++II+ + + +
Sbjct: 485 LLILLGILLIVLGGFGLVVGLGPLGLIGKYLIIGGVVLIILGEGIDGKSLGGALGGLGLY 544
Query: 124 IIIIII------------------------IIIIIIIIIIIIIIIIIIIIDLIF 153
I + ++ ++ I +I II+ II IF
Sbjct: 545 EITGYLGDVLSYARLMALGLAGAGIAMAFNLMAGLLPPSIGVIGIIVGIIIFIF 598
>gnl|CDD|220688 pfam10317, 7TM_GPCR_Srd, Serpentine type 7TM GPCR chemoreceptor
Srd. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srd is part of the
larger Str superfamily of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 293
Score = 37.9 bits (89), Expect = 0.014
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------IIIIIIIII 120
KR K I+I + I + ++I+I ++ + + + +
Sbjct: 117 KRKKLILIFFLHYIPSLSQLLIVIFLVPTDFLPVEAETKELHPNYNLTDYTVTGFSDLQS 176
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+I +I+ I + I III+I+ I+ L+
Sbjct: 177 FPALINTLIMTIPVFPIPIIILILRRKILKLL 208
Score = 37.1 bits (87), Expect = 0.024
Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
L L + + + V + K +I+I + I + ++I+I ++ + + +
Sbjct: 99 SLLLTFYYRYYILKHVDPKRKKLILIFFLHYIPSLSQLLIVIFLVPTDFLPVEAETKELH 158
Query: 115 I--------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ + +I +I+ I + I III+I+
Sbjct: 159 PNYNLTDYTVTGFSDLQSFPALINTLIMTIPVFPIPIIILIL 200
Score = 29.4 bits (67), Expect = 7.0
Identities = 17/106 (16%), Positives = 43/106 (40%), Gaps = 21/106 (19%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIII------------------IIIIIIIIIIII 115
+ +I+ I + I III+I+ I+ ++ I + I ++ +
Sbjct: 179 ALINTLIMTIPVFPIPIIILILRRKILKLLNSLSSNMSPTTKAQHRQLIKGLTIQALLPL 238
Query: 116 IIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIDLIFDFTFM 158
I I+ + ++ + I+I I ++ + ++D + F+
Sbjct: 239 FFYIPIVTLYLLSQLTGTEILILEYFIFVLPTLPPLLDPLITIYFV 284
>gnl|CDD|222388 pfam13800, Sigma_reg_N, Sigma factor regulator N-terminal. This
domain is found near the N-terminus of a sigma factor
regulator. The N-terminus is responsible for interaction
with the sigma factor.
Length = 95
Score = 35.3 bits (82), Expect = 0.014
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIII 105
K++K I+ II+ II+ ++I+II I+I ++
Sbjct: 6 KKAKRKSILRIIVTSIILALLIVIISILISLLYY 39
Score = 32.3 bits (74), Expect = 0.18
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 120 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL----IFDFTFMYLK 161
I+ II+ II+ ++I+II I+I ++ L + + + +
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYYGNGKLNSNKLREVISLTVA 58
Score = 30.3 bits (69), Expect = 0.76
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIII 101
+++S II+ II+ ++I+II I+I ++
Sbjct: 9 KRKSILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIII 109
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIII 110
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIII 111
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIII 112
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIII 113
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIII 114
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIII 115
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIII 116
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIII 117
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIII 118
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIII 119
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIII 120
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIII 121
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIII 122
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIII 123
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIII 124
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIII 125
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIII 126
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIII 127
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIII 128
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIII 129
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIII 130
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIII 131
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIII 132
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIII 133
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIII 134
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIII 135
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIII 136
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIII 137
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIII 138
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIII 139
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIII 140
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIII 141
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 117 IIIIIIIIIIIIIIIIIIIIIIIIIII 143
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIII 144
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIII 145
I+ II+ II+ ++I+II I+I ++
Sbjct: 13 ILRIIVTSIILALLIVIISILISLLYY 39
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 38.1 bits (89), Expect = 0.015
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------II 126
Y + I +I + + I+I ++ I + + + I++++II ++
Sbjct: 82 YWLSWIFVIALELTAASILIQFWELVPDIPYLWVWGAVFIVLLLIINLVGVKGYGEAEFW 141
Query: 127 IIIIIIIIIIIIIIIIIIIIIIID 150
+I +I II II+ II +
Sbjct: 142 FALIKVIAIIGFIIVGFIIPLSGG 165
Score = 36.5 bits (85), Expect = 0.052
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIII 136
I +I + + I+I ++ I + + + I++++II ++ +I
Sbjct: 87 IFVIALELTAASILIQFWELVPDIPYLWVWGAVFIVLLLIINLVGVKGYGEAEFWFALIK 146
Query: 137 IIIIIIIIIIIIIDLIFDF 155
+I II II+ I +
Sbjct: 147 VIAIIGFIIVGFIIPLSGG 165
Score = 29.2 bits (66), Expect = 9.3
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 10/62 (16%)
Query: 75 KYIIIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+ I I I+ ++ I +++ +I + I + +I +I
Sbjct: 233 LQAVWRITIFYILSLLAIGLLVPWNDPGLLADSASAASPFVIFFKSLGISGLAPLINAVI 292
Query: 125 II 126
+
Sbjct: 293 LT 294
>gnl|CDD|225833 COG3296, COG3296, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 143
Score = 36.4 bits (84), Expect = 0.015
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I I I+ ++I+ + + I IIII + +I I+ I I +
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTII 122
Score = 34.5 bits (79), Expect = 0.063
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I I I+ ++I+ + + I IIII + +I I+ I + I+ L+
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVL 119
Score = 33.7 bits (77), Expect = 0.10
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
FV + K + I I I+ ++I+ + + I IIII + +I I+ I +
Sbjct: 53 PFVDAQGKEALNFQISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFAL 112
Query: 128 IIIIIIIIII 137
I+ +++ II
Sbjct: 113 SILSLVLTII 122
Score = 33.7 bits (77), Expect = 0.11
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I I I+ ++I+ + + I IIII + +I I+ I + I+ +++ II I
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTIIAAI 125
Score = 32.9 bits (75), Expect = 0.24
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I I I+ ++I+ + + I IIII + +I I+ I + I+ +++ II
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTII 122
Score = 32.9 bits (75), Expect = 0.24
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I I I+ ++I+ + + I IIII + +I I+ I + I+ +++ II
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTII 122
Score = 32.9 bits (75), Expect = 0.24
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I I I+ ++I+ + + I IIII + +I I+ I + I+ +++ II
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTII 122
Score = 32.9 bits (75), Expect = 0.24
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I I I+ ++I+ + + I IIII + +I I+ I + I+ +++ II
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTII 122
Score = 32.9 bits (75), Expect = 0.24
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I I I+ ++I+ + + I IIII + +I I+ I + I+ +++ II
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTII 122
Score = 32.9 bits (75), Expect = 0.24
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I I I+ ++I+ + + I IIII + +I I+ I + I+ +++ II
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTII 122
Score = 32.9 bits (75), Expect = 0.24
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I I I+ ++I+ + + I IIII + +I I+ I + I+ +++ II
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTII 122
Score = 32.9 bits (75), Expect = 0.24
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I I I+ ++I+ + + I IIII + +I I+ I + I+ +++ II
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTII 122
Score = 32.9 bits (75), Expect = 0.24
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I I I+ ++I+ + + I IIII + +I I+ I + I+ +++ II
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTII 122
Score = 32.9 bits (75), Expect = 0.24
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I I I+ ++I+ + + I IIII + +I I+ I + I+ +++ II
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTII 122
Score = 32.9 bits (75), Expect = 0.24
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
I I I+ ++I+ + + I IIII + +I I+ I + I+ +++ II
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTII 122
Score = 30.6 bits (69), Expect = 1.3
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I I I+ ++I+ + + I IIII + +I I+ I + I+ ++ I
Sbjct: 67 ISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGILSIFALSILSLVLTII 122
>gnl|CDD|216802 pfam01944, DUF95, Integral membrane protein DUF95. Members of this
family have several predicted transmembrane regions. The
function of this family is unknown.
Length = 162
Score = 36.4 bits (85), Expect = 0.015
Identities = 11/84 (13%), Positives = 40/84 (47%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ +++ ++ III I++ + + ++ ++ + ++ + I + + +++ + I
Sbjct: 1 LALLLFLLGIIIGAILVNSLPELQNSLLPSYLVNFLEPMMFLQIFTNNLKVALLMFALGI 60
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYL 160
+ + I+I+ L+ F L
Sbjct: 61 TLGLPSILILFFNGLVLGFVIGLL 84
Score = 36.0 bits (84), Expect = 0.021
Identities = 13/92 (14%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ + +++ + I + + I+I+ +++ +I +++ +++ ++ I+ I+ I I
Sbjct: 49 LKVALLMFALGITLGLPSILILFFNGLVLGFVIGLLVSQGGLLLFLLFILPHGILEIPAI 108
Query: 134 IIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
II + + +I L + K +
Sbjct: 109 IIAGAAGLRLGLIFPGFLEEALKKAFRKAVLL 140
Score = 31.0 bits (71), Expect = 0.96
Identities = 11/70 (15%), Positives = 36/70 (51%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S+ +++ ++ I+ I+ I III + + +I + + ++++++ +
Sbjct: 86 SQGGLLLFLLFILPHGILEIPAIIIAGAAGLRLGLIFPGFLEEALKKAFRKAVLLLLLGV 145
Query: 134 IIIIIIIIII 143
++++II +I
Sbjct: 146 VLLLIIAALI 155
Score = 30.6 bits (70), Expect = 1.3
Identities = 12/101 (11%), Positives = 42/101 (41%), Gaps = 28/101 (27%)
Query: 77 IIIIIIIIIIIIIIIIIIIIII-----------------IIIIIIIIII--IIIIIIIII 117
+ +++ + I + + I+I+ +++ ++ I+ I+ I III
Sbjct: 51 VALLMFALGITLGLPSILILFFNGLVLGFVIGLLVSQGGLLLFLLFILPHGILEIPAIII 110
Query: 118 IIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIII 149
+ + +I ++++++ +++++II
Sbjct: 111 AGAAGLRLGLIFPGFLEEALKKAFRKAVLLLLLGVVLLLII 151
>gnl|CDD|221704 pfam12676, DUF3796, Protein of unknown function (DUF3796). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 120 amino acids in length.
Length = 121
Score = 35.8 bits (83), Expect = 0.016
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
I+ +++ I+++I+II + II ++I I I ++ II LI+++
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFIISLLIYEYR 116
Score = 34.6 bits (80), Expect = 0.042
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
+I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 68 FIVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.9 bits (78), Expect = 0.068
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
+ VRK + I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 58 QHVRKAATRAFIVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.9 bits (78), Expect = 0.084
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
I+ +++ I+++I+II + II ++I I I ++ II ++I +
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFIISLLIYE 114
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 119
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I+ +++ I+++I+II + II ++I I I ++ II
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFII 108
Score = 32.7 bits (75), Expect = 0.17
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 117 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I+ +++ I+++I+II + II ++I I I L+ F L
Sbjct: 69 IVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLT-FIISLL 111
>gnl|CDD|219819 pfam08395, 7tm_7, 7tm Chemosensory receptor. This family includes
a number of gustatory and odorant receptors mainly from
insect species such as A. gambiae and D. melanogaster.
They are classified as G-protein-coupled receptors
(GPCRs), or seven-transmembrane receptors. They show
high sequence divergence, consistent with an ancient
origin for the family.
Length = 370
Score = 37.8 bits (88), Expect = 0.016
Identities = 8/110 (7%), Positives = 59/110 (53%)
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+ R + ++++++++II+++++ ++ +++ ++++++++ ++ +++ +
Sbjct: 109 LLRLGSRRNFRRFNRLLLLLLVLIILLLLVSLLGYLLLSQYFLLVLLLLLYLLPYLVLNL 168
Query: 127 IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKC 176
+I+ +++++I ++ ++ + + + ++ +C L K
Sbjct: 169 LILQYFLLVLLIYRLLRLLNRQLKQLLRELRGLRESGQLRECCLLRLDKL 218
Score = 36.2 bits (84), Expect = 0.053
Identities = 15/113 (13%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
EF R+R + + +++++II+ +++++++ +I I I+ ++ ++ I ++
Sbjct: 16 FEFDRRRGRLRWRRRLYLLLLLIILFLLVLLVLFLISFIRILYFFRRSALLEVVYNIQLV 75
Query: 127 IIIIIIIIIIII-------IIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFL 172
+ ++ +++I++ + ++ ++ +D R + L L
Sbjct: 76 LGLLTVLVILLSLLFQRRRLARLLNELLRLDRRLLRLGSRRNFRRFNRLLLLL 128
Score = 35.1 bits (81), Expect = 0.12
Identities = 9/89 (10%), Positives = 57/89 (64%), Gaps = 5/89 (5%)
Query: 44 QLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIII 103
+L +L ++D+ L + + R+ ++ +++++++II+++++ ++ +++ +
Sbjct: 97 RLLNELLRLDRRLLRLGSRRNF-----RRFNRLLLLLLVLIILLLLVSLLGYLLLSQYFL 151
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+++++++ ++ +++ ++I+ +++++I
Sbjct: 152 LVLLLLLYLLPYLVLNLLILQYFLLVLLI 180
Score = 35.1 bits (81), Expect = 0.13
Identities = 11/78 (14%), Positives = 44/78 (56%)
Query: 54 KILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 113
++L L +R R + +++++II+ +++++++ +I I I+ ++ +
Sbjct: 9 QLLGLFPFEFDRRRGRLRWRRRLYLLLLLIILFLLVLLVLFLISFIRILYFFRRSALLEV 68
Query: 114 IIIIIIIIIIIIIIIIII 131
+ I +++ ++ +++I++
Sbjct: 69 VYNIQLVLGLLTVLVILL 86
Score = 33.1 bits (76), Expect = 0.53
Identities = 6/83 (7%), Positives = 51/83 (61%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ +R + ++++++++II+++++ ++ +++ ++++++++ ++ +
Sbjct: 105 LDRRLLRLGSRRNFRRFNRLLLLLLVLIILLLLVSLLGYLLLSQYFLLVLLLLLYLLPYL 164
Query: 130 IIIIIIIIIIIIIIIIIIIIDLI 152
++ ++I+ +++++I ++ L+
Sbjct: 165 VLNLLILQYFLLVLLIYRLLRLL 187
Score = 30.5 bits (69), Expect = 3.3
Identities = 6/50 (12%), Positives = 26/50 (52%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ +++I++ + I ++I + I+++ +++ ++ L+ + L
Sbjct: 238 LQLLLILLYNFLNITVLIYWLYSILLLGSSGFTLLVFVLWLLIFLLLLVL 287
Score = 29.3 bits (66), Expect = 7.2
Identities = 10/72 (13%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIDLI-- 152
+ +++I++ + I ++I + I+ +++ ++ ++I ++++++I+ +LI
Sbjct: 238 LQLLLILLYNFLNITVLIYWLYSILLLGSSGFTLLVFVLWLLIFLLLLVLIVYACNLISN 297
Query: 153 -FDFTFMYLKEF 163
T + L+
Sbjct: 298 EAKKTALLLRRL 309
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 36.9 bits (86), Expect = 0.017
Identities = 12/100 (12%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 63 KCMVCEFVRK--RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-- 118
K + F RK RS + I+ ++++ ++ +I+ ++ ++ ++ ++ ++ ++ ++
Sbjct: 17 KFIALGFKRKYFRSPWNILDFLVVLPSLVSLILFLLGEDSGLLRVLRLLRLLRLLRLLRR 76
Query: 119 -----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
++ + + ++ +++++++++ I II +F
Sbjct: 77 FPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAIIGVQLF 116
Score = 34.2 bits (79), Expect = 0.12
Identities = 8/120 (6%), Positives = 53/120 (44%), Gaps = 21/120 (17%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIII 131
I+ ++++ ++ +I+ ++ ++ ++ ++ ++ ++ ++ ++ + +
Sbjct: 34 ILDFLVVLPSLVSLILFLLGEDSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKS 93
Query: 132 IIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMN 191
++ +++++++++ I II ++ E C ++ + +F +
Sbjct: 94 LLNLLLLLLLLLFIFAII-----GVQLFGGELD---------KCCDKNENPINGNSNFDS 139
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD. These
permeases have been shown to translocate sodium,
arsenate, antimonite, sulfate and organic anions across
biological membranes in all three kingdoms of life. A
typical anion permease contains 8-13 transmembrane
helices and can function either independently as a
chemiosmotic transporter or as a channel-forming subunit
of an ATP-driven anion pump.
Length = 396
Score = 37.6 bits (88), Expect = 0.018
Identities = 2/78 (2%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 77 IIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ ++++++ ++ ++ +++ + ++ + ++ +++ ++++++ +++
Sbjct: 166 LGLLLLLLGLLYLLFRKKLLLPDEDKLTVLAEPLPARPLLKKFLLLALLLLLLFVLLFFF 225
Query: 132 IIIIIIIIIIIIIIIIII 149
+I + +I ++ ++++++
Sbjct: 226 LIPLGLIALLGALLLLLL 243
Score = 31.8 bits (73), Expect = 1.2
Identities = 3/89 (3%), Positives = 41/89 (46%), Gaps = 23/89 (25%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------------------IIIIIIII 124
+ + + ++++++ ++ ++ +++ ++ +++++
Sbjct: 158 LAFMAPPALGLLLLLLGLLYLLFRKKLLLPDEDKLTVLAEPLPARPLLKKFLLLALLLLL 217
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ +++ +I + +I ++ +++++ L+
Sbjct: 218 LFVLLFFFLIPLGLIALLGALLLLLLLVR 246
Score = 31.8 bits (73), Expect = 1.3
Identities = 5/105 (4%), Positives = 46/105 (43%), Gaps = 30/105 (28%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------------------ 112
+II + + + + + + ++++++ ++ ++
Sbjct: 144 LIIASLSGLGFLDFLAFMAPPALGLLLLLLGLLYLLFRKKLLLPDEDKLTVLAEPLPARP 203
Query: 113 ------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
++ ++++++ +++ +I + +I ++ ++++++++ L
Sbjct: 204 LLKKFLLLALLLLLLFVLLFFFLIPLGLIALLGALLLLLLLVRGL 248
>gnl|CDD|224209 COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy
production and conversion].
Length = 381
Score = 37.7 bits (88), Expect = 0.019
Identities = 10/53 (18%), Positives = 21/53 (39%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
R R + I +I I+ I++ ++ + I I I ++ + I
Sbjct: 322 PRDRPVFTGIGVIFIVSFIVLTVLGALPGIPATTWIGRIGSLLYFYFFTYLKI 374
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIII 99
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIII 100
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIII 101
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIII 102
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIII 103
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIII 104
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIII 105
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIII 106
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIII 107
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIII 108
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIII 109
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIII 110
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIII 111
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIII 112
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIII 113
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIII 114
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIII 115
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIII 116
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIII 117
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIII 118
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIII 119
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIII 120
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIII 121
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIII 122
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIII 123
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIII 124
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIII 125
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIII 126
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIII 127
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIII 128
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIII 129
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIII 130
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIII 131
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIII 132
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIII 133
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 112 IIIIIIIIIIIIIIIIIIIIIII 134
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 113 IIIIIIIIIIIIIIIIIIIIIII 135
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 114 IIIIIIIIIIIIIIIIIIIIIII 136
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 115 IIIIIIIIIIIIIIIIIIIIIII 137
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 116 IIIIIIIIIIIIIIIIIIIIIII 138
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 117 IIIIIIIIIIIIIIIIIIIIIII 139
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 118 IIIIIIIIIIIIIIIIIIIIIII 140
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 119 IIIIIIIIIIIIIIIIIIIIIII 141
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 120 IIIIIIIIIIIIIIIIIIIIIII 142
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 121 IIIIIIIIIIIIIIIIIIIIIII 143
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 122 IIIIIIIIIIIIIIIIIIIIIII 144
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 123 IIIIIIIIIIIIIIIIIIIIIII 145
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 124 IIIIIIIIIIIIIIIIIIIIIII 146
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 125 IIIIIIIIIIIIIIIIIIIIIII 147
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 126 IIIIIIIIIIIIIIIIIIIIIII 148
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 37.9 bits (89), Expect = 0.019
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 127 IIIIIIIIIIIIIIIIIIIIIII 149
+I +II I++IIII + +I+
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 35.2 bits (82), Expect = 0.11
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 131 IIIIIIIIIIIIIIIIIIIDLIF 153
+I +II I++IIII + LI
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLIL 23
Score = 34.8 bits (81), Expect = 0.18
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 76 YIIIIIIIIIIIIIIIIIIII 96
+II I++IIII + +I+
Sbjct: 3 IYLIIAIVVIIIIAYLAGLIL 23
>gnl|CDD|223724 COG0651, HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+
antiporter, MnhD subunit [Energy production and
conversion / Inorganic ion transport and metabolism].
Length = 504
Score = 37.7 bits (88), Expect = 0.020
Identities = 6/90 (6%), Positives = 40/90 (44%), Gaps = 17/90 (18%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--- 133
++++ II+ ++ ++++ + + + + ++ + ++++ I+ + + + +
Sbjct: 4 LLLLPIILPLLAAALLLLFLGLRRLKAKRFLALLGALGLLLLSILGFLEVGGPVGGLGGW 63
Query: 134 --------------IIIIIIIIIIIIIIII 149
I ++II ++ ++ +
Sbjct: 64 LAPFGIVLAADPLSAIFLLIIALVGLLASL 93
Score = 36.9 bits (86), Expect = 0.033
Identities = 6/92 (6%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII- 132
+ +++ II+ ++ ++++ + + + + ++ + ++++ I+ + + + +
Sbjct: 2 NNLLLLPIILPLLAAALLLLFLGLRRLKAKRFLALLGALGLLLLSILGFLEVGGPVGGLG 61
Query: 133 ----------------IIIIIIIIIIIIIIII 148
I ++II ++ ++ +
Sbjct: 62 GWLAPFGIVLAADPLSAIFLLIIALVGLLASL 93
Score = 36.6 bits (85), Expect = 0.042
Identities = 14/104 (13%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------------IIIIIIIII 117
SK+++I + ++ I+II+ +I++ + I I + +
Sbjct: 393 SKFLLIQALFKANALLAILIILAALILLASLATFISLARIFMLLFFGQGAPIERDVPEVP 452
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
++++ ++I+ I+ +++ + ++ I+ I +Y+
Sbjct: 453 LLMLAPMVILAILCLVLGLAPDPLLPKILQAAAAILLVPGLYIA 496
Score = 36.6 bits (85), Expect = 0.046
Identities = 6/91 (6%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--- 136
++++ II+ ++ ++++ + + + + ++ + ++++ I+ + + + +
Sbjct: 4 LLLLPIILPLLAAALLLLFLGLRRLKAKRFLALLGALGLLLLSILGFLEVGGPVGGLGGW 63
Query: 137 --------------IIIIIIIIIIIIIDLIF 153
I ++II ++ ++ ++
Sbjct: 64 LAPFGIVLAADPLSAIFLLIIALVGLLASLY 94
Score = 35.4 bits (82), Expect = 0.098
Identities = 6/76 (7%), Positives = 34/76 (44%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++++ II+ ++ ++++ + + + + ++ + ++++ I+ + + + +
Sbjct: 4 LLLLPIILPLLAAALLLLFLGLRRLKAKRFLALLGALGLLLLSILGFLEVGGPVGGLGGW 63
Query: 144 IIIIIIDLIFDFTFMY 159
+ I L D
Sbjct: 64 LAPFGIVLAADPLSAI 79
Score = 34.6 bits (80), Expect = 0.19
Identities = 5/66 (7%), Positives = 32/66 (48%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
++++ II+ ++ ++++ + + + + ++ + ++++ I+ + + +
Sbjct: 4 LLLLPIILPLLAAALLLLFLGLRRLKAKRFLALLGALGLLLLSILGFLEVGGPVGGLGGW 63
Query: 160 LKEFRV 165
L F +
Sbjct: 64 LAPFGI 69
Score = 33.5 bits (77), Expect = 0.43
Identities = 14/117 (11%), Positives = 42/117 (35%), Gaps = 26/117 (22%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
KR + +I + + + I ++I + ++ I+II+ +I++ +
Sbjct: 366 KRMPLTAVAFLIGALSLAGLPPFNGFISKFLLIQALFKANALLAILIILAALILLASLAT 425
Query: 132 II--------------------------IIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
I +++ ++I+ I+ +++ L D + +
Sbjct: 426 FISLARIFMLLFFGQGAPIERDVPEVPLLMLAPMVILAILCLVLGLAPDPLLPKILQ 482
Score = 31.6 bits (72), Expect = 1.7
Identities = 10/70 (14%), Positives = 29/70 (41%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+ +I + + + I ++I + ++ I+II+ +I++ + I L
Sbjct: 373 VAFLIGALSLAGLPPFNGFISKFLLIQALFKANALLAILIILAALILLASLATFISLARI 432
Query: 155 FTFMYLKEFR 164
F ++ +
Sbjct: 433 FMLLFFGQGA 442
Score = 29.6 bits (67), Expect = 7.0
Identities = 13/83 (15%), Positives = 34/83 (40%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
R K + + + + +I + + + I ++I + ++ I+II+
Sbjct: 356 RDLEKLGGLAKRMPLTAVAFLIGALSLAGLPPFNGFISKFLLIQALFKANALLAILIILA 415
Query: 131 IIIIIIIIIIIIIIIIIIIDLIF 153
+I++ + I + I + L F
Sbjct: 416 ALILLASLATFISLARIFMLLFF 438
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 36.9 bits (86), Expect = 0.020
Identities = 9/93 (9%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 69 FVRKRS--KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIII 119
R+ + Y ++ I++ + I ++ II ++I+ ++ + ++++++
Sbjct: 82 LERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVYFMVGLPVSRFFLFLLVLLLTA 141
Query: 120 IIIIIIIIIIIII---IIIIIIIIIIIIIIIII 149
+ + + I + I ++++ +++
Sbjct: 142 LAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Score = 35.3 bits (82), Expect = 0.063
Identities = 14/121 (11%), Positives = 43/121 (35%), Gaps = 31/121 (25%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIIIII 117
R R + ++ +I +++ ++ + ++ I+ + I
Sbjct: 14 RWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLNRPGLLFFSILFNAFSSLTGISP 73
Query: 118 IIII------------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+ I ++ I++ + I ++ II ++I+ ++ L F++
Sbjct: 74 VFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVYFMVGLPVSRFFLF 133
Query: 160 L 160
L
Sbjct: 134 L 134
Score = 33.4 bits (77), Expect = 0.29
Identities = 7/69 (10%), Positives = 34/69 (49%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
++ I++ + I ++ II ++I+ ++ + + + ++++++ + + + I +
Sbjct: 96 YVLAKILVELPISLLQAIIFLLIVYFMVGLPVSRFFLFLLVLLLTALAASGLGLFIAALA 155
Query: 150 DLIFDFTFM 158
D + +
Sbjct: 156 PSFEDASQI 164
Score = 33.0 bits (76), Expect = 0.38
Identities = 9/81 (11%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I++ + I ++ II ++I+ ++ + + + ++++++ + + + I +
Sbjct: 101 ILVELPISLLQAIIFLLIVYFMVGLPVSRFFLFLLVLLLTALAASGLGLFIAALAPSFED 160
Query: 140 IIIIIIIIIIDLIFDFT-FMY 159
I ++++ L+ + F
Sbjct: 161 ASQIGPLLLLPLLL-LSGFFI 180
Score = 29.1 bits (66), Expect = 5.7
Identities = 8/97 (8%), Positives = 36/97 (37%), Gaps = 19/97 (19%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIII 124
++ I+ + I + I ++ ++ I++ + I ++
Sbjct: 52 RPGLLFFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQ 111
Query: 125 IIIIIIIIIIII--------IIIIIIIIIIIIIDLIF 153
II ++I+ ++ + ++++++ + +
Sbjct: 112 AIIFLLIVYFMVGLPVSRFFLFLLVLLLTALAASGLG 148
>gnl|CDD|202979 pfam04346, EutH, Ethanolamine utilisation protein, EutH. EutH is a
bacterial membrane protein whose molecular function is
unknown. It has been suggested that it may act as an
ethanolamine transporter, responsible for carrying
ethanolamine from the periplasm to the cytoplasm.
Length = 354
Score = 37.6 bits (88), Expect = 0.021
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-- 134
I+ II I I +I ++ I +++ +I III I++ + + +I ++
Sbjct: 143 ILAGIITIPIGCLIGGLVAGFDIGMVLRNLIPIIIFAILLALGLKKFPDGMIKGFLVFGK 202
Query: 135 IIIIIIIIIIIIIIIDLIFDFT 156
I++ +I I + I+ +
Sbjct: 203 IMVAVITIGLAASIVQYLTGIK 224
Score = 35.2 bits (82), Expect = 0.11
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------IIII 128
II I I +I ++ I +++ +I III I++ + + +I I++
Sbjct: 147 IITIPIGCLIGGLVAGFDIGMVLRNLIPIIIFAILLALGLKKFPDGMIKGFLVFGKIMVA 206
Query: 129 IIIIIIIIIIIIIIIIIIII 148
+I I + I+ + I II
Sbjct: 207 VITIGLAASIVQYLTGIKII 226
Score = 34.9 bits (81), Expect = 0.14
Identities = 16/70 (22%), Positives = 35/70 (50%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I +++ +I III I++ + + +I ++ I++ +I I + I+ + I
Sbjct: 165 IGMVLRNLIPIIIFAILLALGLKKFPDGMIKGFLVFGKIMVAVITIGLAASIVQYLTGIK 224
Query: 145 IIIIIDLIFD 154
II + IF+
Sbjct: 225 IIPGMAPIFE 234
Score = 34.9 bits (81), Expect = 0.14
Identities = 15/73 (20%), Positives = 35/73 (47%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I ++ I +++ +I III I++ + + +I ++ I++ +I I +
Sbjct: 154 CLIGGLVAGFDIGMVLRNLIPIIIFAILLALGLKKFPDGMIKGFLVFGKIMVAVITIGLA 213
Query: 137 IIIIIIIIIIIII 149
I+ + I II
Sbjct: 214 ASIVQYLTGIKII 226
>gnl|CDD|133462 cd06852, GT_MraY, Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of
undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-
pentapeptide from UDP-MurNAc-pentapeptide and
undecaprenyl-phosphate. It is an integral membrane
protein with possibly ten transmembrane domains.
Length = 280
Score = 37.1 bits (87), Expect = 0.021
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
R K ++ +I I+ +++ +I + +I + I+ I I +I+
Sbjct: 71 RQKLLLQFLIAIVFALLLYYFNGSGTLITLPFFKNGLIDLGILYIPFAIFVIV 123
Score = 35.9 bits (84), Expect = 0.047
Identities = 12/107 (11%), Positives = 40/107 (37%), Gaps = 34/107 (31%)
Query: 77 IIIIIIIIIIIII--------IIIIIIIIII--------------------------III 102
I+ I+ I+I ++ +++++++ + +++
Sbjct: 17 ILFILAILISTLLWADLDSPEVLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLL 76
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+I I+ +++ +I + +I + I+ I I +I+
Sbjct: 77 QFLIAIVFALLLYYFNGSGTLITLPFFKNGLIDLGILYIPFAIFVIV 123
Score = 33.6 bits (78), Expect = 0.29
Identities = 10/99 (10%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIII------------III 121
I+ I+ I+I ++ + +++++++ + +I + ++ +++
Sbjct: 17 ILFILAILISTLLWADLDSPEVLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLL 76
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+I I+ +++ +I + + + D +Y+
Sbjct: 77 QFLIAIVFALLLYYFNGSGTLITLPFFKNGLIDLGILYI 115
>gnl|CDD|218316 pfam04893, Yip1, Yip1 domain. The Yip1 integral membrane domain
contains four transmembrane alpha helices. The domain is
characterized by the motifs DLYGP and GY. The Yip1
protein is a golgi protein involved in vesicular
transport that interacts with GTPases.
Length = 171
Score = 36.3 bits (84), Expect = 0.022
Identities = 3/60 (5%), Positives = 32/60 (53%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++++ ++ +++ +++ +++ ++ I + + II + +++ + ++ +++
Sbjct: 24 PLLLLALLTLLLGLLLALLLGWLLGSGETIQGLTGGSALGSIIGGYLGLLLGLFLLALLL 83
Score = 35.9 bits (83), Expect = 0.028
Identities = 4/62 (6%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIII 127
I+ +I +++ +++ +++++ ++ +I + ++ + + +++ +++++++
Sbjct: 110 LILGGLIALLLSLLLGALLLLVGLLALIWSLYLLYLGLKAAHGLSKKKALLVALLLLLLL 169
Query: 128 II 129
I+
Sbjct: 170 IV 171
>gnl|CDD|225851 COG3314, COG3314, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 427
Score = 37.3 bits (87), Expect = 0.022
Identities = 16/95 (16%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 74 SKYIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
I+ ++ +I I + + I I + + + + I+ ++ +I II+I
Sbjct: 3 KAKILKFLLASLIGIFLFFVPILIKGSLTIPVAHLAMSLQIVFGPLLPFVITSIILIGAG 62
Query: 127 IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
+ + + I+ +I+ ++ L+ F MY+
Sbjct: 63 LPFFKGTFLKPFLSIVWLILRVLGLV--FVGMYVF 95
Score = 35.8 bits (83), Expect = 0.074
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 2/117 (1%)
Query: 33 MSISALKCIQSQLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIII 92
MSI K + + + + Y + +K I I + + I+
Sbjct: 311 MSIGTGKLVGANYTSIFDNLGIRFY--PFLELRQIPEAALAAKTIAIGFADMFLPAILTT 368
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+I + + +I + + +I+ I I + ++II II II + II
Sbjct: 369 SASNDNTRFVIAALSVSQLIYLSEVGPLILASKIPISFLDLLIIFIIRTIITLPIIA 425
Score = 31.6 bits (72), Expect = 1.6
Identities = 15/73 (20%), Positives = 34/73 (46%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
I+ ++ +I I + + I+I + I + + + + I+ ++ +I II+I
Sbjct: 2 NKAKILKFLLASLIGIFLFFVPILIKGSLTIPVAHLAMSLQIVFGPLLPFVITSIILIGA 61
Query: 151 LIFDFTFMYLKEF 163
+ F +LK F
Sbjct: 62 GLPFFKGTFLKPF 74
>gnl|CDD|224877 COG1966, CstA, Carbon starvation protein, predicted membrane
protein [Signal transduction mechanisms].
Length = 575
Score = 37.3 bits (87), Expect = 0.025
Identities = 14/103 (13%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIII 117
+ +++ + +K +++ +I++I++ + +I ++ + + I + +++ I
Sbjct: 119 IAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLLANSPWGVFTVFLTIPLAVLMGIY 178
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ + + I +I + ++I+ I + ++ I IF + + L
Sbjct: 179 LYRLRGNMGISSVIGLALLILAIYLGSVVPIDAPIFTGSLVIL 221
Score = 29.2 bits (66), Expect = 8.5
Identities = 11/69 (15%), Positives = 30/69 (43%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+R +Y I +I ++ + + + I+ + I + II+ +++II++
Sbjct: 492 RRRRYHWITLIPAAFVLFVTLTAGLQKILNALYPAFAKGSTIFLSIILFTLVLIILLFAF 551
Query: 132 IIIIIIIII 140
I++
Sbjct: 552 FIVLKAKSF 560
>gnl|CDD|234205 TIGR03426, shape_MreD, rod shape-determining protein MreD. Members
of this protein family are the MreD protein of bacterial
cell shape determination. Most rod-shaped bacteria
depend on MreB and RodA to achieve either a rod shape or
some other non-spherical morphology such as coil or
stalk formation. MreD is encoded in an operon with MreB,
and often with RodA and PBP-2 as well. It is highly
hydrophobic (therefore somewhat low-complexity) and
highly divergent, and therefore sometimes tricky to
discover by homology, but this model finds most examples
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 154
Score = 35.7 bits (83), Expect = 0.025
Identities = 4/73 (5%), Positives = 31/73 (42%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++ + + + +II +++I+ +++ +I+ ++ + + +
Sbjct: 76 LTLVAYLAASLFQRFRQFDLWQQALIIFLLLILGELLVFLILTLLGNAFFSLEYFWLFRL 135
Query: 136 IIIIIIIIIIIII 148
+ +++ ++ +
Sbjct: 136 LPTLLLNLLWPWV 148
Score = 35.7 bits (83), Expect = 0.027
Identities = 5/78 (6%), Positives = 35/78 (44%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ + + ++ + + + +II +++I+ +++ +I+ ++ +
Sbjct: 72 HALALTLVAYLAASLFQRFRQFDLWQQALIIFLLLILGELLVFLILTLLGNAFFSLEYFW 131
Query: 136 IIIIIIIIIIIIIIDLIF 153
+ ++ +++ ++ +F
Sbjct: 132 LFRLLPTLLLNLLWPWVF 149
Score = 33.0 bits (76), Expect = 0.21
Identities = 7/57 (12%), Positives = 25/57 (43%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+ + ++ + + + +II +++I+ +++ +I + F L+ F
Sbjct: 74 LALTLVAYLAASLFQRFRQFDLWQQALIIFLLLILGELLVFLILTLLGNAFFSLEYF 130
Score = 33.0 bits (76), Expect = 0.23
Identities = 7/79 (8%), Positives = 37/79 (46%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ + ++ + + + +II +++I+ +++ +I+ ++ + +
Sbjct: 74 LALTLVAYLAASLFQRFRQFDLWQQALIIFLLLILGELLVFLILTLLGNAFFSLEYFWLF 133
Query: 142 IIIIIIIIDLIFDFTFMYL 160
++ ++++L++ + F L
Sbjct: 134 RLLPTLLLNLLWPWVFFLL 152
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 37.3 bits (87), Expect = 0.027
Identities = 8/68 (11%), Positives = 31/68 (45%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
KR + I I+ ++++ + + + + I I ++ +I+++I++ + +
Sbjct: 152 SKRDRLENFIFILFLLLLALAVFLYLFIRGWDPNSIFKALLRALIVLVIVVPPALPAAVT 211
Query: 131 IIIIIIII 138
+ + +
Sbjct: 212 VALAVGDA 219
Score = 36.5 bits (85), Expect = 0.044
Identities = 7/74 (9%), Positives = 33/74 (44%)
Query: 62 TKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
T+ + + +I I+ ++++ + + + + I I ++ +I+++I++
Sbjct: 146 TRTPLQSKRDRLENFIFILFLLLLALAVFLYLFIRGWDPNSIFKALLRALIVLVIVVPPA 205
Query: 122 IIIIIIIIIIIIII 135
+ + + + +
Sbjct: 206 LPAAVTVALAVGDA 219
Score = 36.5 bits (85), Expect = 0.046
Identities = 7/62 (11%), Positives = 29/62 (46%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
I I+ ++++ + + + + I I ++ +I+++I++ + + + + +
Sbjct: 160 FIFILFLLLLALAVFLYLFIRGWDPNSIFKALLRALIVLVIVVPPALPAAVTVALAVGDA 219
Query: 150 DL 151
L
Sbjct: 220 RL 221
Score = 35.4 bits (82), Expect = 0.11
Identities = 6/75 (8%), Positives = 32/75 (42%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
++ + + I I+ ++++ + + + + I I ++ +I+++I++
Sbjct: 145 ETRTPLQSKRDRLENFIFILFLLLLALAVFLYLFIRGWDPNSIFKALLRALIVLVIVVPP 204
Query: 133 IIIIIIIIIIIIIII 147
+ + + + +
Sbjct: 205 ALPAAVTVALAVGDA 219
Score = 35.0 bits (81), Expect = 0.15
Identities = 6/73 (8%), Positives = 30/73 (41%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ + I I+ ++++ + + + + I I ++ +I+++I++ +
Sbjct: 147 RTPLQSKRDRLENFIFILFLLLLALAVFLYLFIRGWDPNSIFKALLRALIVLVIVVPPAL 206
Query: 132 IIIIIIIIIIIII 144
+ + + +
Sbjct: 207 PAAVTVALAVGDA 219
Score = 34.6 bits (80), Expect = 0.19
Identities = 6/64 (9%), Positives = 29/64 (45%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I I+ ++++ + + + + I I ++ +I+++I++ + + + + +
Sbjct: 160 FIFILFLLLLALAVFLYLFIRGWDPNSIFKALLRALIVLVIVVPPALPAAVTVALAVGDA 219
Query: 147 IIID 150
+
Sbjct: 220 RLAK 223
Score = 29.2 bits (66), Expect = 8.0
Identities = 4/39 (10%), Positives = 18/39 (46%)
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I I+ ++++ + + + + I I ++ + ++
Sbjct: 160 FIFILFLLLLALAVFLYLFIRGWDPNSIFKALLRALIVL 198
>gnl|CDD|235081 PRK02870, PRK02870, heat shock protein HtpX; Provisional.
Length = 336
Score = 37.0 bits (86), Expect = 0.028
Identities = 10/68 (14%), Positives = 31/68 (45%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
R +++ +I + I + I +++ I I + ++ ++ I +I+ ++
Sbjct: 21 RLKTRAVIATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSLVA 80
Query: 131 IIIIIIII 138
+I I++
Sbjct: 81 VISILVTF 88
Score = 33.5 bits (77), Expect = 0.33
Identities = 9/68 (13%), Positives = 28/68 (41%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ +I + I + I +++ I I + ++ ++ I +I+ ++
Sbjct: 21 RLKTRAVIATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSLVA 80
Query: 132 IIIIIIII 139
+I I++
Sbjct: 81 VISILVTF 88
Score = 33.5 bits (77), Expect = 0.38
Identities = 12/70 (17%), Positives = 30/70 (42%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
R R K +I + I + I +++ I I + ++ ++ I +I+ +
Sbjct: 19 RNRLKTRAVIATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSL 78
Query: 131 IIIIIIIIII 140
+ +I I++
Sbjct: 79 VAVISILVTF 88
Score = 32.8 bits (75), Expect = 0.68
Identities = 11/68 (16%), Positives = 29/68 (42%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+I + I + I +++ I I + ++ ++ I +I+ ++ +I I++
Sbjct: 27 VIATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSLVAVISILV 86
Query: 145 IIIIIDLI 152
D I
Sbjct: 87 TFQNFDKI 94
Score = 32.4 bits (74), Expect = 0.76
Identities = 10/74 (13%), Positives = 31/74 (41%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ +R+ +I + I + I +++ I I + ++ ++ I +
Sbjct: 15 KVIRRNRLKTRAVIATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATL 74
Query: 128 IIIIIIIIIIIIII 141
I+ ++ +I I++
Sbjct: 75 IMSLVAVISILVTF 88
Score = 32.4 bits (74), Expect = 0.80
Identities = 10/71 (14%), Positives = 31/71 (43%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+R++ +I + I + I +++ I I + ++ ++ I +I+
Sbjct: 18 RRNRLKTRAVIATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMS 77
Query: 132 IIIIIIIIIII 142
++ +I I++
Sbjct: 78 LVAVISILVTF 88
Score = 32.4 bits (74), Expect = 0.85
Identities = 9/62 (14%), Positives = 27/62 (43%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+I + I + I +++ I I + ++ ++ I +I+ ++ +I I++
Sbjct: 27 VIATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSLVAVISILV 86
Query: 142 II 143
Sbjct: 87 TF 88
Score = 32.4 bits (74), Expect = 0.85
Identities = 9/62 (14%), Positives = 27/62 (43%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+I + I + I +++ I I + ++ ++ I +I+ ++ +I I++
Sbjct: 27 VIATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSLVAVISILV 86
Query: 143 II 144
Sbjct: 87 TF 88
Score = 32.4 bits (74), Expect = 0.85
Identities = 9/62 (14%), Positives = 27/62 (43%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+I + I + I +++ I I + ++ ++ I +I+ ++ +I I++
Sbjct: 27 VIATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSLVAVISILV 86
Query: 144 II 145
Sbjct: 87 TF 88
Score = 32.4 bits (74), Expect = 0.89
Identities = 11/66 (16%), Positives = 29/66 (43%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+I + I + I +++ I I + ++ ++ I +I+ ++ +I I++
Sbjct: 27 VIATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSLVAVISILV 86
Query: 149 IDLIFD 154
FD
Sbjct: 87 TFQNFD 92
Score = 30.8 bits (70), Expect = 2.6
Identities = 10/65 (15%), Positives = 28/65 (43%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+I + I + I +++ I I + ++ ++ I +I+ ++ +I I+
Sbjct: 27 VIATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSLVAVISILV 86
Query: 151 LIFDF 155
+F
Sbjct: 87 TFQNF 91
Score = 29.3 bits (66), Expect = 6.4
Identities = 9/64 (14%), Positives = 27/64 (42%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+I + I + I +++ I I + ++ ++ I +I+ ++ +I ++
Sbjct: 27 VIATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSLVAVISILV 86
Query: 154 DFTF 157
F
Sbjct: 87 TFQN 90
>gnl|CDD|129470 TIGR00374, TIGR00374, conserved hypothetical protein. This model
is built on a superfamily of proteins in the Archaea and
in Aquifex aeolicus. The authenticity of homology can be
seen in the presence of motifs in the alignment that
include residues relatively rare among these sequences,
even though the alignment includes long regions of
low-complexity hydrophobic sequences. One apparent
fusion protein contains a Glycos_transf_2 region in the
N-terminal half of the protein and a region homologous
to this superfamily in the C-terminal region [Unknown
function, General].
Length = 319
Score = 37.0 bits (86), Expect = 0.028
Identities = 16/76 (21%), Positives = 41/76 (53%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I+ +
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKILKAV 177
Query: 152 IFDFTFMYLKEFRVEQ 167
+ F+ E ++
Sbjct: 178 VKFFSRKNELESKLRS 193
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 34.3 bits (79), Expect = 0.21
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
I+++ + I++ ++ I + I +I+I+I +++ +II+ I I+ I I
Sbjct: 119 IFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 33.9 bits (78), Expect = 0.25
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 110
FV K I +I+I+I +++ +II+ I I+ I I
Sbjct: 132 FVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKI 173
Score = 32.4 bits (74), Expect = 0.84
Identities = 13/67 (19%), Positives = 34/67 (50%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
+I I+++ + I++ ++ I + I +I+I+I +++ +II+ I I + +
Sbjct: 118 VIFILLLPLSAIMVFVLSIPKLFIYLILILITLLLFLIILYIFGNKKILQKIASKILKAV 177
Query: 165 VEQCPLF 171
V+
Sbjct: 178 VKFFSRK 184
>gnl|CDD|221039 pfam11234, DUF3036, Protein of unknown function (DUF3036). Some
members in this family of proteins are annotated as
yoaS. Currently no function is known.
Length = 155
Score = 35.7 bits (83), Expect = 0.029
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIII 120
F + + I I I ++ ++ + + +I+I ++II +I ++
Sbjct: 79 FSELSVRALKNIKYCAIAISLLYFALLPLFYLAAERDDAPGLILIGLVIIFASFVIAVLA 138
Query: 121 III 123
++
Sbjct: 139 AVL 141
Score = 35.3 bits (82), Expect = 0.041
Identities = 11/105 (10%), Positives = 38/105 (36%), Gaps = 26/105 (24%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
I+I++I I ++ + I ++ ++ I ++ +++ + + I + + +
Sbjct: 10 IVIVLIGIPVLALCIFLVPLLANDTAELGPEIAYLLYPVLLGVYLGAIPFYVALYQAFKL 69
Query: 129 I------------------IIIIIIIIIIIIIIIIIIIIDLIFDF 155
+ I I I ++ ++ + L +
Sbjct: 70 LRYIDRNTAFSELSVRALKNIKYCAIAISLLYFALLPLFYLAAER 114
Score = 34.5 bits (80), Expect = 0.080
Identities = 11/99 (11%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIII 122
Y++ +++ + + I + + ++ I + I I I ++
Sbjct: 43 YLLYPVLLGVYLGAIPFYVALYQAFKLLRYIDRNTAFSELSVRALKNIKYCAIAISLLYF 102
Query: 123 IIIIIIIII--------IIIIIIIIIIIIIIIIIIDLIF 153
++ + + +I+I ++II +I ++ +
Sbjct: 103 ALLPLFYLAAERDDAPGLILIGLVIIFASFVIAVLAAVL 141
>gnl|CDD|202965 pfam04304, DUF454, Protein of unknown function (DUF454). Predicted
membrane protein.
Length = 71
Score = 33.7 bits (78), Expect = 0.030
Identities = 6/46 (13%), Positives = 28/46 (60%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 115
+ +++K ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 24 IPRKAKIRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/40 (15%), Positives = 24/40 (60%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
I ++ + + I +I ++ + + I+++++++ ++I I
Sbjct: 30 IRALLSMWLSFAISLIFLVPSLWVKILLLVLLLGVLIWIW 69
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger.
Length = 27
Score = 32.2 bits (74), Expect = 0.033
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 410 YKSTKCNDVQQAGYCPRGVFCAFAHVD 436
YK+ C ++ GYCPRG C FAH
Sbjct: 2 YKTELCKFFKR-GYCPRGDRCKFAHPL 27
Score = 30.7 bits (70), Expect = 0.11
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 213 CTKYDETTGLCPDGDECPFLH 233
C + G CP GD C F H
Sbjct: 7 CKFFK--RGYCPRGDRCKFAH 25
Score = 29.1 bits (66), Expect = 0.51
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 367 KYRSTPCPNVKHGDEWGEPANCESGDLCQYCH 398
KY++ C K G C GD C++ H
Sbjct: 1 KYKTELCKFFKRG-------YCPRGDRCKFAH 25
Score = 27.2 bits (61), Expect = 2.4
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 331 NYKTEQCKRPPR-LCRQGYACPQFHN 355
YKTE CK R C +G C H
Sbjct: 1 KYKTELCKFFKRGYCPRGDRCKFAHP 26
>gnl|CDD|219354 pfam07264, EI24, Etoposide-induced protein 2.4 (EI24). This family
contains a number of eukaryotic etoposide-induced 2.4
(EI24) proteins approximately 350 residues long as well
as bacterial CysZ proteins (formerly known as DUF540).
In cells treated with the cytotoxic drug etoposide, EI24
is induced by p53. It has been suggested to play an
important role in negative cell growth control.
Length = 205
Score = 36.0 bits (84), Expect = 0.035
Identities = 3/83 (3%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIII 129
S + ++++ +++ +++ ++ + ++ ++ ++ ++ + ++ I+ +++++
Sbjct: 9 LSPRLRRLVLLPLLLNLLLFAGLLYFLFSLLGPLLDALLSLLWLGWLSWLLWILAVLLLL 68
Query: 130 IIIIIIIIIIIIIIIIIIIIDLI 152
+++ + +++ +I +
Sbjct: 69 VLLWFLFVVVASLIAAPFWTPDL 91
Score = 29.5 bits (67), Expect = 4.6
Identities = 4/77 (5%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIII 142
+ ++++ +++ +++ ++ + ++ ++ ++ ++ I+ ++++++++
Sbjct: 13 LRRLVLLPLLLNLLLFAGLLYFLFSLLGPLLDALLSLLWLGWLSWLLWILAVLLLLVLLW 72
Query: 143 IIIIIIIDLIFDFTFMY 159
+ +++ LI F
Sbjct: 73 FLFVVVASLIAAP-FWT 88
>gnl|CDD|234044 TIGR02872, spore_ytvI, sporulation integral membrane protein YtvI.
Three lines of evidence show this protein to be involved
in sporulation. First, it is under control of a
sporulation-specific sigma factor, sigma-E. Second,
mutation leads to a sporulation defect. Third, it if
found in exactly those genomes whose bacteria are
capable of sporulation, except for being absent in
Clostridium acetobutylicum ATCC824. This protein has
extensive hydrophobic regions and is likely an integral
membrane protein [Cellular processes, Sporulation and
germination].
Length = 341
Score = 36.9 bits (86), Expect = 0.035
Identities = 14/96 (14%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIII 120
+ I++I +I I ++ I + + +I +I+ +I+ + + I+++
Sbjct: 1 RLILLIGLIAIFVLAIYFALPYSLPFVIALILALILEPMVRFLEKKLKLPRALAVFIVLL 60
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
I + II ++ I++ ++ I + + + +
Sbjct: 61 IFLGIIGGLLYILVTELVTETIALAKNLPQYLNNIN 96
Score = 36.9 bits (86), Expect = 0.035
Identities = 16/92 (17%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIII 122
+ + K + +I+++I +I++I ++II + + +II I+ I+ I+
Sbjct: 195 KNIFSELKKAAFGFLKAQLILVLITFVIVLIGLLIIGVDYALTLALIIGIVDILPILGPG 254
Query: 123 IIIIIIIIIIII-------IIIIIIIIIIIII 147
+++ + + I I ++I+ ++++I+
Sbjct: 255 AVLVPWALYLFITGNYAMGIGLLILYLVVLIL 286
Score = 36.1 bits (84), Expect = 0.053
Identities = 15/90 (16%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIII 129
I++I +I I ++ I + + +I +I+ +I+ + + I+++I
Sbjct: 3 ILLIGLIAIFVLAIYFALPYSLPFVIALILALILEPMVRFLEKKLKLPRALAVFIVLLIF 62
Query: 130 IIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+ II ++ I++ ++ I L +
Sbjct: 63 LGIIGGLLYILVTELVTETIALAKNLPQYL 92
Score = 31.5 bits (72), Expect = 1.5
Identities = 12/53 (22%), Positives = 32/53 (60%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
I+++I +I++I ++II + + + +II I+ I+ I+ +++ + + I
Sbjct: 214 ILVLITFVIVLIGLLIIGVDYALTLALIIGIVDILPILGPGAVLVPWALYLFI 266
Score = 31.5 bits (72), Expect = 1.5
Identities = 12/53 (22%), Positives = 32/53 (60%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
I+++I +I++I ++II + + + +II I+ I+ I+ +++ + + I
Sbjct: 214 ILVLITFVIVLIGLLIIGVDYALTLALIIGIVDILPILGPGAVLVPWALYLFI 266
Score = 30.7 bits (70), Expect = 2.9
Identities = 12/53 (22%), Positives = 31/53 (58%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I+++I +I++I ++II + + + +II I+ I+ I+ +++ + I
Sbjct: 214 ILVLITFVIVLIGLLIIGVDYALTLALIIGIVDILPILGPGAVLVPWALYLFI 266
>gnl|CDD|225994 COG3463, COG3463, Predicted membrane protein [Function unknown].
Length = 458
Score = 37.0 bits (86), Expect = 0.036
Identities = 19/81 (23%), Positives = 40/81 (49%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
KR K+ + +I +++I++ +III ++I + + + II +II +
Sbjct: 158 KRKKWKLFLIFLVLILLTKEDAFLIIISLLIWLRLRNEGNPNTVKIIRKNAKLIIPFFAL 217
Query: 132 IIIIIIIIIIIIIIIIIIDLI 152
+ II+ I +II +I +
Sbjct: 218 SMAYIILSIKVIIPLIGLVGY 238
Score = 35.5 bits (82), Expect = 0.11
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
RK+ K +I +++I++ +III ++I + + + II +II
Sbjct: 157 LKRKKWKLFLIFLVLILLTKEDAFLIIISLLIWLRLRNEGNPNTVKIIRKNAKLIIPFFA 216
Query: 129 IIIIIIIIIIIIIIIIII 146
+ + II+ I +II +I
Sbjct: 217 LSMAYIILSIKVIIPLIG 234
Score = 32.4 bits (74), Expect = 0.80
Identities = 20/89 (22%), Positives = 44/89 (49%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ K + +I +++I++ +III ++I + + + II +II +
Sbjct: 158 KRKKWKLFLIFLVLILLTKEDAFLIIISLLIWLRLRNEGNPNTVKIIRKNAKLIIPFFAL 217
Query: 133 IIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
+ II+ I +II +I + + + +YLK
Sbjct: 218 SMAYIILSIKVIIPLIGLVGYLYPSLYLK 246
>gnl|CDD|221116 pfam11457, DUF3021, Protein of unknown function (DUF3021). This is
a bacterial family of uncharacterized proteins.
Length = 134
Score = 35.0 bits (81), Expect = 0.037
Identities = 14/95 (14%), Positives = 40/95 (42%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
+ + + V + + +I + + +I ++ +I I+ ++
Sbjct: 25 FSLFNSPSIYLPSSPVSTKGILSVFLIGALFGLASLIFETERWSLLKQTLIHFILTLLTF 84
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ + I+ + I +++ II I+I +II +I+
Sbjct: 85 LPLAILNGWFPLSGIALLLFTIIFILIYLIIWLIL 119
Score = 31.9 bits (73), Expect = 0.43
Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 33/123 (26%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIII----------------IIIIIIIIIIIIII--- 112
K K +I +I I I II +I + I+ + +I + +
Sbjct: 2 KLIKKLINSGLIGIGIGSIISLIFSLFNSPSIYLPSSPVSTKGILSVFLIGALFGLASLI 61
Query: 113 -----------IIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+I I+ ++ + + I+ + I +++ II I+I +I+ ++
Sbjct: 62 FETERWSLLKQTLIHFILTLLTFLPLAILNGWFPLSGIALLLFTIIFILIYLIIWLILYL 121
Query: 159 YLK 161
+K
Sbjct: 122 RIK 124
>gnl|CDD|201180 pfam00361, Oxidored_q1, NADH-Ubiquinone/plastoquinone (complex I),
various chains. This family is part of complex I which
catalyzes the transfer of two electrons from NADH to
ubiquinone in a reaction that is associated with proton
translocation across the membrane.
Length = 270
Score = 36.4 bits (85), Expect = 0.038
Identities = 12/93 (12%), Positives = 36/93 (38%), Gaps = 20/93 (21%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------- 125
+ +I+ + + +++ + + +I I++I+ I+ +++ +
Sbjct: 111 PVSSLILATTLKKAGLYLLLRLSNLFSSSNLISYILLILGILSMLLGSLGALNQTDIKKL 170
Query: 126 ----------IIIIIIIIIIIIIIIIIIIIIII 148
++I I+ + II II +I
Sbjct: 171 LAYSSISHMGFMLIGILSLGNYGIIGAIIHLIS 203
Score = 33.7 bits (78), Expect = 0.24
Identities = 14/113 (12%), Positives = 38/113 (33%), Gaps = 23/113 (20%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------------------I 111
K + +++ + + +I I++I+ I+ +++
Sbjct: 122 KKAGLYLLLRLSNLFSSSNLISYILLILGILSMLLGSLGALNQTDIKKLLAYSSISHMGF 181
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
++I I+ + II II +I ++ ++ +II
Sbjct: 182 MLIGILSLGNYGIIGAIIHLISHGFFSALLFLLAGLIIHRSGSRDLRNYGGLF 234
Score = 33.4 bits (77), Expect = 0.34
Identities = 6/49 (12%), Positives = 24/49 (48%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ +I+ + + +++ + + +I I++I+ I+ +++ L
Sbjct: 112 VSSLILATTLKKAGLYLLLRLSNLFSSSNLISYILLILGILSMLLGSLG 160
Score = 32.2 bits (74), Expect = 0.71
Identities = 6/56 (10%), Positives = 27/56 (48%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
+ +I+ + + +++ + + +I I++I+ I+ +++ + + D+
Sbjct: 112 VSSLILATTLKKAGLYLLLRLSNLFSSSNLISYILLILGILSMLLGSLGALNQTDI 167
Score = 30.7 bits (70), Expect = 2.8
Identities = 14/98 (14%), Positives = 39/98 (39%), Gaps = 16/98 (16%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIII-------II---------IIIIIIIIIIII 117
S +I I++I+ I+ +++ + + ++ ++I I+ +
Sbjct: 133 SNLFSSSNLISYILLILGILSMLLGSLGALNQTDIKKLLAYSSISHMGFMLIGILSLGNY 192
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
II II +I ++ ++ +II + ++
Sbjct: 193 GIIGAIIHLISHGFFSALLFLLAGLIIHRSGSRDLRNY 230
>gnl|CDD|224205 COG1286, CvpA, Uncharacterized membrane protein, required for
colicin V production [General function prediction only].
Length = 182
Score = 35.7 bits (83), Expect = 0.039
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I I I I I +I++I+ + +I +II + I I+ + + ++I+ I++
Sbjct: 59 PNIAIGIAIAIFFVILLIVGAFVNSLIAFLIIFSGLGFIDRILGFLFGALRGVLILAIVL 118
Query: 147 IIIDLIFDF 155
+ I F
Sbjct: 119 FFLAGITGF 127
Score = 35.0 bits (81), Expect = 0.075
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 24/105 (22%)
Query: 77 IIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIII-------------------I 112
I ++ +II+III+ ++ I ++ ++ I+ +
Sbjct: 1 ITMLDLIILIIIVASFLLGLRRGFIREVLSLLSWILAAFVASLFYKPLAPLLREYIPYPN 60
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
I I I I I +I++I+ + +I +II + ID I F F
Sbjct: 61 IAIGIAIAIFFVILLIVGAFVNSLIAFLIIFSGLGFIDRILGFLF 105
Score = 32.6 bits (75), Expect = 0.36
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
Y I I I I I +I++I+ + +I +II + I I+ + + ++I+ I+
Sbjct: 58 YPNIAIGIAIAIFFVILLIVGAFVNSLIAFLIIFSGLGFIDRILGFLFGALRGVLILAIV 117
Query: 136 IIII 139
+ +
Sbjct: 118 LFFL 121
Score = 32.3 bits (74), Expect = 0.47
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+YI I I I I I +I++I+ + +I +II + I I+ + + ++
Sbjct: 53 REYIPYPNIAIGIAIAIFFVILLIVGAFVNSLIAFLIIFSGLGFIDRILGFLFGALRGVL 112
Query: 134 IIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
I+ I++ + I D + L
Sbjct: 113 ILAIVLFFLAGITGFKDTPD-WLQSSLY 139
>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for
N-linked glycosylation [General function prediction
only].
Length = 773
Score = 37.0 bits (86), Expect = 0.041
Identities = 9/104 (8%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIII 124
V+ ++ + + + +I+ +++ + I+ I + + + + + I
Sbjct: 291 LVKNFELRKFFAYLVPLTLSLALILGGLLLFLELLRAYILPISGRLYVGGLQVYLPFGTI 350
Query: 125 III--IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVE 166
I + + I + ++ I + ++ + E
Sbjct: 351 AEAAPIFLPLGITNAALFGAAGFFALLLGILLLAYFLVRRPKKE 394
Score = 30.5 bits (69), Expect = 4.1
Identities = 7/111 (6%), Positives = 45/111 (40%), Gaps = 25/111 (22%)
Query: 76 YIIIIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIIIIII--------I 115
Y I+ I+++ ++++++ + ++ + ++ ++I+ ++ +
Sbjct: 216 YYILAILLLYALVLLVLAFLRGKKTDILGFVGLVTLTLLSLLILPPLLGFSGYYYSGFSV 275
Query: 116 IIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
++ I++ ++ ++ + ++ + + + +I L+
Sbjct: 276 LLGFIVLAVLGLLFSLVKNFELRKFFAYLVPLTLSLALILGGLLLFLELLR 326
>gnl|CDD|177218 MTH00162, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 89
Score = 33.6 bits (78), Expect = 0.041
Identities = 3/78 (3%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 76 YIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+++I + + +++ + ++++++ + +++ + ++ + + + ++ +
Sbjct: 2 MMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFL 61
Query: 132 IIIIIIIIIIIIIIIIII 149
+ + + I++ +I
Sbjct: 62 TFSVCEGALGLSILVSMI 79
Score = 32.8 bits (76), Expect = 0.093
Identities = 3/61 (4%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 104 IIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+++++I + + +++ + ++++++ + +++ + ++ + + + F +
Sbjct: 1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFF 60
Query: 160 L 160
L
Sbjct: 61 L 61
Score = 30.9 bits (71), Expect = 0.38
Identities = 3/63 (4%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 95 IIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+++++I + + +++ + ++++++ + +++ + ++ + + + ++
Sbjct: 1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFF 60
Query: 151 LIF 153
L F
Sbjct: 61 LTF 63
Score = 30.5 bits (70), Expect = 0.59
Identities = 5/64 (7%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 99 IIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+++++I + + +++ + ++++++ + +++ + ++ + + + L+F
Sbjct: 1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFF 60
Query: 155 FTFM 158
TF
Sbjct: 61 LTFS 64
Score = 27.8 bits (63), Expect = 5.1
Identities = 6/63 (9%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
F+ KR K+++++++ + +++ + ++ + + + ++ + + + + I++
Sbjct: 18 FLSKR-KHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILV 76
Query: 129 III 131
+I
Sbjct: 77 SMI 79
>gnl|CDD|240530 cd13125, MATE_like_10, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. This
family might function as a translocase for
lipopolysaccharides, such as O-antigen. The integral
membrane proteins from the MATE family are involved in
exporting metabolites across the cell membrane and are
responsible for multidrug resistance (MDR) in many
bacteria and animals. A number of family members are
involved in the synthesis of peptidoglycan components in
bacteria.
Length = 409
Score = 36.4 bits (85), Expect = 0.046
Identities = 11/102 (10%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII- 127
F ++ I++ + + + + +++ I+ + I +I II +I +++ ++++
Sbjct: 106 FGDIDYSWVFILLGLALPLFALNNLLLAILNGLKEIKRYALINIISSLIGLLVSVLLVYF 165
Query: 128 -----IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
++ +++ +I ++ +I F +++ + +
Sbjct: 166 YGLKGALLALVLNQSLIFLVTLIYSRKQPWFKLKYLWGRLDK 207
Score = 31.4 bits (72), Expect = 2.0
Identities = 17/107 (15%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIIIIIII 119
V K+ K I+ ++ I ++I ++ +II I+ + + +I I ++
Sbjct: 289 VNKQLKVILPLVAIGALLIYLLRDLIIQILFSEEFLPARELFLWQLIGDFFKIASWLLGY 348
Query: 120 III------IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I++ + II I+ ++ +++ ++ I + + + Y+
Sbjct: 349 ILLAKGMTKLFIITEILFALLFVLLSLLFIPLFGLEGAGIAYAINYI 395
>gnl|CDD|226234 COG3711, BglG, Transcriptional antiterminator [Transcription].
Length = 491
Score = 36.6 bits (85), Expect = 0.047
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K ++ I +I II II ++ + + II + I+I I+
Sbjct: 375 NILKEKVLKITKLIFEIIEIIEASLLRELDEDSLDYDRIITTHLEFEADRILISPILDEE 434
Query: 132 IIIIIIIII---------IIIIIIIIIDLIFDFTF 157
++ + + I ++ LI
Sbjct: 435 NDEQLLKQVKKKYPKAYIDVEKIDKLLQLIKQNKL 469
Score = 33.9 bits (78), Expect = 0.28
Identities = 11/87 (12%), Positives = 30/87 (34%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ + + + + I ++ + + II + I+I I+ ++ +
Sbjct: 384 ITKLIFEIIEIIEASLLRELDEDSLDYDRIITTHLEFEADRILISPILDEENDEQLLKQV 443
Query: 126 IIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I + I ++ +I LI
Sbjct: 444 KKKYPKAYIDVEKIDKLLQLIKQNKLI 470
Score = 33.6 bits (77), Expect = 0.40
Identities = 11/78 (14%), Positives = 30/78 (38%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++ I +I II II ++ + + II + I+I I+ +
Sbjct: 380 KVLKITKLIFEIIEIIEASLLRELDEDSLDYDRIITTHLEFEADRILISPILDEENDEQL 439
Query: 146 IIIIDLIFDFTFMYLKEF 163
+ + + ++ +++
Sbjct: 440 LKQVKKKYPKAYIDVEKI 457
Score = 33.6 bits (77), Expect = 0.43
Identities = 14/84 (16%), Positives = 31/84 (36%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I + + I+ ++ I +I II II ++ + + II +
Sbjct: 362 IALHFGSALERQNNILKEKVLKITKLIFEIIEIIEASLLRELDEDSLDYDRIITTHLEFE 421
Query: 139 IIIIIIIIIIIDLIFDFTFMYLKE 162
I+I I+ + + +K+
Sbjct: 422 ADRILISPILDEENDEQLLKQVKK 445
Score = 33.2 bits (76), Expect = 0.50
Identities = 13/102 (12%), Positives = 35/102 (34%)
Query: 49 LEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 108
LE+ + IL + + + + + ++ + + II + I+I
Sbjct: 370 LERQNNILKEKVLKITKLIFEIIEIIEASLLRELDEDSLDYDRIITTHLEFEADRILISP 429
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
I+ ++ + I + I ++ +I +I
Sbjct: 430 ILDEENDEQLLKQVKKKYPKAYIDVEKIDKLLQLIKQNKLIS 471
Score = 32.8 bits (75), Expect = 0.61
Identities = 13/78 (16%), Positives = 28/78 (35%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+I + + I+ ++ I +I II II ++ + + II +
Sbjct: 361 FIALHFGSALERQNNILKEKVLKITKLIFEIIEIIEASLLRELDEDSLDYDRIITTHLEF 420
Query: 136 IIIIIIIIIIIIIIDLIF 153
I+I I+ +
Sbjct: 421 EADRILISPILDEENDEQ 438
Score = 32.8 bits (75), Expect = 0.62
Identities = 12/80 (15%), Positives = 31/80 (38%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
++ I +I II II ++ + + II + I+I I+ +
Sbjct: 380 KVLKITKLIFEIIEIIEASLLRELDEDSLDYDRIITTHLEFEADRILISPILDEENDEQL 439
Query: 148 IIDLIFDFTFMYLKEFRVEQ 167
+ + + Y+ ++++
Sbjct: 440 LKQVKKKYPKAYIDVEKIDK 459
Score = 32.8 bits (75), Expect = 0.65
Identities = 11/79 (13%), Positives = 25/79 (31%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I II ++ + + II + I+I I+ ++ +
Sbjct: 392 IEIIEASLLRELDEDSLDYDRIITTHLEFEADRILISPILDEENDEQLLKQVKKKYPKAY 451
Query: 137 IIIIIIIIIIIIIDLIFDF 155
I + I ++ +I
Sbjct: 452 IDVEKIDKLLQLIKQNKLI 470
Score = 32.4 bits (74), Expect = 0.91
Identities = 12/84 (14%), Positives = 28/84 (33%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
II ++ + + II + I+I I+ ++ + I
Sbjct: 394 IIEASLLRELDEDSLDYDRIITTHLEFEADRILISPILDEENDEQLLKQVKKKYPKAYID 453
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYL 160
+ I ++ +I + + YL
Sbjct: 454 VEKIDKLLQLIKQNKLISDEKEYL 477
>gnl|CDD|205242 pfam13061, DUF3923, Protein of unknown function (DUF3923). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 80 amino acids in length.
Length = 66
Score = 33.0 bits (76), Expect = 0.048
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIII 119
K+ I II +++ +I + I I +I + ++ + +II+I +I +
Sbjct: 2 KFWWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWL 61
Query: 120 III 122
II+
Sbjct: 62 IIL 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 82 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 126
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 127 I 127
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 83 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 127
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 128 I 128
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 84 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 128
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 129 I 129
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 86 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 130
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 131 I 131
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 87 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 131
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 132 I 132
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 88 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 132
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 133 I 133
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 89 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 133
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 134 I 134
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 90 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 134
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 135 I 135
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 91 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 135
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 136 I 136
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 92 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 136
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 137 I 137
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 93 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 137
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 138 I 138
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 94 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 138
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 139 I 139
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 95 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 139
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 140 I 140
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 96 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 140
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 141 I 141
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 97 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 141
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 142 I 142
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 98 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 142
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 143 I 143
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 99 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 143
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 144 I 144
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 100 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 144
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 145 I 145
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 101 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 145
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 146 I 146
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 102 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 146
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 147 I 147
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 103 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 147
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 148 I 148
+
Sbjct: 64 L 64
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 104 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIII 148
I II +++ +I + I I +I + ++ + +II+I +I +II
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 149 I 149
+
Sbjct: 64 L 64
Score = 31.1 bits (71), Expect = 0.24
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 109 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIDLIF 153
I II +++ +I + I I +I + ++ + +II+I +I LI
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Score = 30.7 bits (70), Expect = 0.31
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 15/64 (23%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIII 116
+ +I II +++ +I + I I +I + ++ + +II+I +I
Sbjct: 1 MKFWWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIW 60
Query: 117 IIII 120
+II+
Sbjct: 61 LIIL 64
Score = 29.1 bits (66), Expect = 1.0
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 15/61 (24%)
Query: 108 IIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIDLI 152
I II +++ +I + I I +I + ++ + +II+I +I +I
Sbjct: 4 WWISNIIWLLLFVIGALFIWIRKVDGAGVVQTPELKLITLAVLGVAFLIILIGQLIWLII 63
Query: 153 F 153
Sbjct: 64 L 64
>gnl|CDD|227699 COG5412, COG5412, Phage-related protein [Function unknown].
Length = 637
Score = 36.7 bits (85), Expect = 0.049
Identities = 19/104 (18%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 35 ISALKCIQSQLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIII 94
IS+L I ++ LE V ++ ++ + + + I I+ + II I I
Sbjct: 108 ISSLGNIIDAVKNLLESVINAIFGTA--FDILSQIIGGLNSNIGGIVQAVQNIINFIKIF 165
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ ++ +++ I + II ++I++I + I ++
Sbjct: 166 EGFLNLVGLVMQFIWLTIITAKFASWEGLVIVVIGGLAIAFGVL 209
Score = 36.3 bits (84), Expect = 0.054
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I I+ + II I I + ++ +++ I + II ++I++I + I
Sbjct: 147 NIGGIVQAVQNIINFIKIFEGFLNLVGLVMQFIWLTIITAKFASWEGLVIVVIGGLAIAF 206
Query: 147 IIIDLIF-DFT 156
++ + F
Sbjct: 207 GVLMVFSESFR 217
Score = 34.8 bits (80), Expect = 0.19
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I+ II + I I+ + II I I + ++ +++ I + II ++
Sbjct: 136 ILSQIIGGLNSNIGGIVQAVQNIINFIKIFEGFLNLVGLVMQFIWLTIITAKFASWEGLV 195
Query: 139 IIIIIIIIIIIDLIFDFTFMYLKEF 163
I++I + I F L F
Sbjct: 196 IVVIGGLAIA--------FGVLMVF 212
Score = 34.4 bits (79), Expect = 0.21
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
I I+ + II I I + ++ +++ I + II ++I++I +
Sbjct: 143 GLNSNIGGIVQAVQNIINFIKIFEGFLNLVGLVMQFIWLTIITAKFASWEGLVIVVIGGL 202
Query: 135 IIIIIII 141
I ++
Sbjct: 203 AIAFGVL 209
Score = 34.4 bits (79), Expect = 0.23
Identities = 12/68 (17%), Positives = 29/68 (42%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ I I+ + II I I + ++ +++ I + II ++I++I
Sbjct: 142 GGLNSNIGGIVQAVQNIINFIKIFEGFLNLVGLVMQFIWLTIITAKFASWEGLVIVVIGG 201
Query: 135 IIIIIIII 142
+ I ++
Sbjct: 202 LAIAFGVL 209
Score = 33.6 bits (77), Expect = 0.41
Identities = 27/75 (36%), Positives = 37/75 (49%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I +I I ++ I+I ++ I I II II II II + II II +I
Sbjct: 320 FIGLITKITGLVNQTFDIVIPVLSWISEIWNSIIGNIISIITRIIDFVRTIIGTIIDVIG 379
Query: 140 IIIIIIIIIIDLIFD 154
II I +I +IFD
Sbjct: 380 PIISTIADVIKIIFD 394
Score = 32.4 bits (74), Expect = 1.0
Identities = 28/75 (37%), Positives = 36/75 (48%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I+I ++ I I II II II II + II II +I II I +I II +
Sbjct: 337 IVIPVLSWISEIWNSIIGNIISIITRIIDFVRTIIGTIIDVIGPIISTIADVIKIIFDGV 396
Query: 139 IIIIIIIIIIIDLIF 153
II + I LI
Sbjct: 397 KPIINFLKNIFSLIG 411
Score = 32.1 bits (73), Expect = 1.4
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+I I ++ I+I ++ I I II II II II + II II +I II
Sbjct: 323 LITKITGLVNQTFDIVIPVLSWISEIWNSIIGNIISIITRIIDFVRTIIGTIIDVIGPII 382
Query: 139 IIIIIIIIIIIDLI 152
I +I II D +
Sbjct: 383 STIADVIKIIFDGV 396
Score = 31.3 bits (71), Expect = 2.2
Identities = 27/79 (34%), Positives = 36/79 (45%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I+I ++ I I II II II II + II II +I II I +I II +
Sbjct: 337 IVIPVLSWISEIWNSIIGNIISIITRIIDFVRTIIGTIIDVIGPIISTIADVIKIIFDGV 396
Query: 143 IIIIIIIDLIFDFTFMYLK 161
II + IF +
Sbjct: 397 KPIINFLKNIFSLIGSKVG 415
Score = 29.7 bits (67), Expect = 5.7
Identities = 25/71 (35%), Positives = 34/71 (47%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I I ++ I+I ++ I I II II II II + II II +I II
Sbjct: 323 LITKITGLVNQTFDIVIPVLSWISEIWNSIIGNIISIITRIIDFVRTIIGTIIDVIGPII 382
Query: 137 IIIIIIIIIII 147
I +I II
Sbjct: 383 STIADVIKIIF 393
Score = 29.7 bits (67), Expect = 5.7
Identities = 25/71 (35%), Positives = 34/71 (47%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+I I ++ I+I ++ I I II II II II + II II +I II
Sbjct: 323 LITKITGLVNQTFDIVIPVLSWISEIWNSIIGNIISIITRIIDFVRTIIGTIIDVIGPII 382
Query: 138 IIIIIIIIIII 148
I +I II
Sbjct: 383 STIADVIKIIF 393
Score = 29.7 bits (67), Expect = 5.7
Identities = 29/89 (32%), Positives = 39/89 (43%)
Query: 54 KILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 113
KI L T +V + S+ II II II II + II II +I II I
Sbjct: 326 KITGLVNQTFDIVIPVLSWISEIWNSIIGNIISIITRIIDFVRTIIGTIIDVIGPIISTI 385
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+I II + II + I +I +
Sbjct: 386 ADVIKIIFDGVKPIINFLKNIFSLIGSKV 414
Score = 29.7 bits (67), Expect = 7.1
Identities = 25/83 (30%), Positives = 34/83 (40%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ I I II II II II + II II +I II I +I II + I
Sbjct: 340 PVLSWISEIWNSIIGNIISIITRIIDFVRTIIGTIIDVIGPIISTIADVIKIIFDGVKPI 399
Query: 135 IIIIIIIIIIIIIIIDLIFDFTF 157
I + I +I + +
Sbjct: 400 INFLKNIFSLIGSKVGMAIIPVL 422
Score = 29.4 bits (66), Expect = 8.2
Identities = 27/79 (34%), Positives = 37/79 (46%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I I ++ I+I ++ I I II II II II + II II +I II
Sbjct: 324 ITKITGLVNQTFDIVIPVLSWISEIWNSIIGNIISIITRIIDFVRTIIGTIIDVIGPIIS 383
Query: 137 IIIIIIIIIIIIIDLIFDF 155
I +I II + I +F
Sbjct: 384 TIADVIKIIFDGVKPIINF 402
>gnl|CDD|233768 TIGR02185, Trep_Strep, conserved hypothetical integral membrane
protein TIGR02185. This family consists of strongly
hydrophobic proteins about 190 amino acids in length
with a strongly basic motif near the C-terminus. If is
found in rather few species, but in paralogous families
of 12 members in the oral pathogenic spirochaete
Treponema denticola and 2 in Streptococcus pneumoniae R6
[Cell envelope, Other].
Length = 189
Score = 35.3 bits (82), Expect = 0.049
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------I 126
K I I ++ I I I+ ++ + + I ++ II +++ I
Sbjct: 4 KDFIFIGLLTAIYFAIQFIVGMLTMTTGFFAHLFSPGITAFLVGIIFFLMVAKVPKRGVI 63
Query: 127 IIIIIIIIII--------IIIIIIIIIIIIIDLIF 153
I I++ ++ +II II ++ D+I
Sbjct: 64 FIFGILLGLLFFLMGMYWPMIISSIIGGLLADIIA 98
Score = 31.1 bits (71), Expect = 1.3
Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIII 127
Y I I+ ++ + + I ++ II +++ I I I++ ++
Sbjct: 16 YFAIQFIVGMLTMTTGFFAHLFSPGITAFLVGIIFFLMVAKVPKRGVIFIFGILLGLLFF 75
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
++ + +II II ++ II +
Sbjct: 76 LMGMYWPMIISSIIGGLLADIIASTGGY 103
>gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism].
Length = 461
Score = 36.1 bits (84), Expect = 0.058
Identities = 9/70 (12%), Positives = 36/70 (51%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++ +++++ ++++ + + + I++ II+ I+ I + + I++I+++++
Sbjct: 8 LLALLVLLALVLLGPVPFGLSGFAWLFAILVAAIILWILEAIPLFALAILVIVLLVLSGF 67
Query: 149 IDLIFDFTFM 158
I I
Sbjct: 68 ILAISASKLA 77
Score = 33.8 bits (78), Expect = 0.30
Identities = 15/87 (17%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
KR + +++++ ++++ + + + I++ II+ I+ I + + I++I++++
Sbjct: 4 KRLDLLALLVLLALVLLGPVPFGLSGFAWLFAILVAAIILWILEAIPLFALAILVIVLLV 63
Query: 132 IIIIIIII-----IIIIIIIIIIDLIF 153
+ I+ I + I LIF
Sbjct: 64 LSGFILAISASKLALSGFANSTIWLIF 90
>gnl|CDD|217401 pfam03169, OPT, OPT oligopeptide transporter protein. The OPT
family of oligopeptide transporters is distinct from the
ABC pfam00005 and PTR pfam00854 transporter families.
OPT transporters were first recognised in fungi (Candida
albicans and Schizosaccharomyces pombe), but this
alignment also includes orthologues from Arabidopsis
thaliana. OPT transporters are thought to have 12-14
transmembrane domains and contain the following motif:
SPYxEVRxxVxxxDDP.
Length = 619
Score = 36.1 bits (84), Expect = 0.060
Identities = 9/80 (11%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--IIIIIIIIIIII 133
Y+ +++ +++ I ++ + + + +++ +++ + I I + + + I
Sbjct: 354 YLAGLVLSLVLGIALVAALFPTQLPVWGLLLALLLAFVFAIPSAYIAGLTGSSPVSGLGI 413
Query: 134 IIIIIIIIIIIIIIIIDLIF 153
+ +I ++ + +LIF
Sbjct: 414 LTELIAGYVLPGRPLANLIF 433
Score = 31.5 bits (72), Expect = 1.7
Identities = 5/64 (7%), Positives = 25/64 (39%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+ +++ +++ I ++ + + + +++ +++ + I I +
Sbjct: 354 YLAGLVLSLVLGIALVAALFPTQLPVWGLLLALLLAFVFAIPSAYIAGLTGSSPVSGLGI 413
Query: 160 LKEF 163
L E
Sbjct: 414 LTEL 417
Score = 30.4 bits (69), Expect = 4.4
Identities = 10/101 (9%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 76 YIIIIIIIII--------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
++ +++ I +++ +++ + I I + + + I+ +
Sbjct: 358 LVLSLVLGIALVAALFPTQLPVWGLLLALLLAFVFAIPSAYIAGLTGSSPVSGLGILTEL 417
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF-TFMYLK 161
I ++ + +I + D + D T Y
Sbjct: 418 IAGYVLPGRPLANLIFGGVGYNAAAQAGDFMQDLKTGHYTG 458
>gnl|CDD|219313 pfam07155, ECF-ribofla_trS, ECF-type riboflavin transporter, S
component. This family is the substrate-binding
component (S component) of the energy coupling-factor
(ECF)-type riboflavin transporter. It is a transmembrane
protein which binds riboflavin, and is responsible for
riboflavin-uptake by cells.
Length = 169
Score = 34.9 bits (81), Expect = 0.061
Identities = 12/77 (15%), Positives = 35/77 (45%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ K+ K + I + +++ I+++I I ++I I+I + + I I
Sbjct: 91 LIAKKLKKNLENGIFKLKGLVLFNIVMVIGYFIAWGLLIDILIYSEPAWKVFLQSIPANI 150
Query: 129 IIIIIIIIIIIIIIIII 145
+ ++ I+ + ++ +
Sbjct: 151 VQAVVGAIVGLPLLKAL 167
Score = 33.0 bits (76), Expect = 0.28
Identities = 11/76 (14%), Positives = 36/76 (47%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ + ++K + I + +++ I+++I I ++I I+I + + I I+
Sbjct: 92 IAKKLKKNLENGIFKLKGLVLFNIVMVIGYFIAWGLLIDILIYSEPAWKVFLQSIPANIV 151
Query: 126 IIIIIIIIIIIIIIII 141
++ I+ + ++ +
Sbjct: 152 QAVVGAIVGLPLLKAL 167
Score = 31.8 bits (73), Expect = 0.63
Identities = 9/58 (15%), Positives = 28/58 (48%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+++ I+++I I ++I I+I + + I I+ ++ I+ + ++ +
Sbjct: 110 LVLFNIVMVIGYFIAWGLLIDILIYSEPAWKVFLQSIPANIVQAVVGAIVGLPLLKAL 167
Score = 31.8 bits (73), Expect = 0.63
Identities = 9/58 (15%), Positives = 28/58 (48%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+++ I+++I I ++I I+I + + I I+ ++ I+ + ++ +
Sbjct: 110 LVLFNIVMVIGYFIAWGLLIDILIYSEPAWKVFLQSIPANIVQAVVGAIVGLPLLKAL 167
Score = 31.8 bits (73), Expect = 0.63
Identities = 9/58 (15%), Positives = 28/58 (48%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+++ I+++I I ++I I+I + + I I+ ++ I+ + ++ +
Sbjct: 110 LVLFNIVMVIGYFIAWGLLIDILIYSEPAWKVFLQSIPANIVQAVVGAIVGLPLLKAL 167
Score = 31.8 bits (73), Expect = 0.63
Identities = 9/58 (15%), Positives = 28/58 (48%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+++ I+++I I ++I I+I + + I I+ ++ I+ + ++ +
Sbjct: 110 LVLFNIVMVIGYFIAWGLLIDILIYSEPAWKVFLQSIPANIVQAVVGAIVGLPLLKAL 167
Score = 28.3 bits (64), Expect = 9.5
Identities = 10/54 (18%), Positives = 25/54 (46%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+++ I+++I I ++I I+I + + I I+ ++ I+ L
Sbjct: 110 LVLFNIVMVIGYFIAWGLLIDILIYSEPAWKVFLQSIPANIVQAVVGAIVGLPL 163
>gnl|CDD|223682 COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease
component [Inorganic ion transport and metabolism].
Length = 334
Score = 35.7 bits (83), Expect = 0.067
Identities = 8/77 (10%), Positives = 37/77 (48%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ ++ I++ + + I I ++ + + ++ +++ +I + + + +I+ I
Sbjct: 95 ASLGAVLAILLFPLGLGISIYLLPLAAFLGALLAALLVYLIARLRGGGLSPLRLILAGIA 154
Query: 134 IIIIIIIIIIIIIIIID 150
+ + + +++I+ D
Sbjct: 155 LSALFGALTSLLLILAD 171
Score = 34.9 bits (81), Expect = 0.12
Identities = 8/81 (9%), Positives = 36/81 (44%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ I++ + + I I ++ + + ++ +++ +I + + + +I+ I + +
Sbjct: 101 LAILLFPLGLGISIYLLPLAAFLGALLAALLVYLIARLRGGGLSPLRLILAGIALSALFG 160
Query: 137 IIIIIIIIIIIIIDLIFDFTF 157
+ +++I+ + F
Sbjct: 161 ALTSLLLILADDSLALQAILF 181
Score = 34.9 bits (81), Expect = 0.13
Identities = 8/74 (10%), Positives = 36/74 (48%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++ I++ + + I I ++ + + ++ +++ +I + + + +I+ I + +
Sbjct: 99 AVLAILLFPLGLGISIYLLPLAAFLGALLAALLVYLIARLRGGGLSPLRLILAGIALSAL 158
Query: 137 IIIIIIIIIIIIID 150
+ +++I+ D
Sbjct: 159 FGALTSLLLILADD 172
Score = 34.5 bits (80), Expect = 0.17
Identities = 8/78 (10%), Positives = 36/78 (46%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++ I++ + + I I ++ + + ++ +++ +I + + + +I+ I + +
Sbjct: 100 VLAILLFPLGLGISIYLLPLAAFLGALLAALLVYLIARLRGGGLSPLRLILAGIALSALF 159
Query: 137 IIIIIIIIIIIIIDLIFD 154
+ +++I+ L
Sbjct: 160 GALTSLLLILADDSLALQ 177
Score = 33.0 bits (76), Expect = 0.45
Identities = 7/75 (9%), Positives = 44/75 (58%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ + I++++++++++I+++++ + + +I + ++ + + +I++ I + I++
Sbjct: 1 KLRLILLLLLLLLLLILLLLLSLSLGAVISLSDVLQALFGLDGSGKHVIVLDIRLPRILL 60
Query: 133 IIIIIIIIIIIIIII 147
I++ + + ++
Sbjct: 61 AILVGAALAVAGALL 75
Score = 33.0 bits (76), Expect = 0.50
Identities = 13/92 (14%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIII 128
R + +++++ ++ + ++ I + +I I +++ ++ + ++ ++++
Sbjct: 234 NRLRLLLLLLASLLTAAAVSLVGPIGFVGLIAPHIARLLVGNDHRYLLPLSALLGALLLL 293
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ I+ I+ I + I+ LI F+YL
Sbjct: 294 LADILARTILAPAEIPVGIVTALIGAPYFIYL 325
Score = 32.2 bits (74), Expect = 0.81
Identities = 9/76 (11%), Positives = 37/76 (48%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
R R + + +I+ I + + + +++I+ + + I+ ++ +
Sbjct: 135 IARLRGGGLSPLRLILAGIALSALFGALTSLLLILADDSLALQAILFWLLGSLGGATWSD 194
Query: 129 IIIIIIIIIIIIIIII 144
++I++ +I+I +++++
Sbjct: 195 VLILLPVILIGLLLLL 210
Score = 32.2 bits (74), Expect = 0.83
Identities = 12/99 (12%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
S Y++ + + ++ +++ +I + + +I+ I + + + +++I+
Sbjct: 113 SIYLLPLAAFLGALLAALLVYLIARLRGGGLSPLRLILAGIALSALFGALTSLLLILADD 172
Query: 128 IIIIIIIII-------------IIIIIIIIIIIIIDLIF 153
+ + I+ ++I++ +I+I ++ L+F
Sbjct: 173 SLALQAILFWLLGSLGGATWSDVLILLPVILIGLLLLLF 211
Score = 32.2 bits (74), Expect = 0.94
Identities = 7/79 (8%), Positives = 43/79 (54%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ R +++++++++I+++++ + + +I + ++ + + +I++ I + I++
Sbjct: 1 KLRLILLLLLLLLLLILLLLLSLSLGAVISLSDVLQALFGLDGSGKHVIVLDIRLPRILL 60
Query: 131 IIIIIIIIIIIIIIIIIII 149
I++ + + ++ +
Sbjct: 61 AILVGAALAVAGALLQGVT 79
Score = 31.9 bits (73), Expect = 1.0
Identities = 10/99 (10%), Positives = 41/99 (41%), Gaps = 19/99 (19%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIII 127
I ++ + + ++ +++ +I + + +I+ I + + + +++I+
Sbjct: 110 LGISIYLLPLAAFLGALLAALLVYLIARLRGGGLSPLRLILAGIALSALFGALTSLLLIL 169
Query: 128 IIIIIIIIIIII-------------IIIIIIIIIIDLIF 153
+ + I+ ++I++ +I+I L+
Sbjct: 170 ADDSLALQAILFWLLGSLGGATWSDVLILLPVILIGLLL 208
Score = 31.9 bits (73), Expect = 1.2
Identities = 7/76 (9%), Positives = 42/76 (55%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+I++++++++++I+++++ + + +I + ++ + + +I++ I + I++ I+
Sbjct: 4 LILLLLLLLLLLILLLLLSLSLGAVISLSDVLQALFGLDGSGKHVIVLDIRLPRILLAIL 63
Query: 142 IIIIIIIIDLIFDFTF 157
+ + + +
Sbjct: 64 VGAALAVAGALLQGVT 79
Score = 31.5 bits (72), Expect = 1.4
Identities = 7/76 (9%), Positives = 44/76 (57%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+I++++++++++I+++++ + + +I + ++ + + +I++ I + I++ I+
Sbjct: 4 LILLLLLLLLLLILLLLLSLSLGAVISLSDVLQALFGLDGSGKHVIVLDIRLPRILLAIL 63
Query: 138 IIIIIIIIIIIIDLIF 153
+ + + ++ +
Sbjct: 64 VGAALAVAGALLQGVT 79
Score = 31.5 bits (72), Expect = 1.6
Identities = 7/76 (9%), Positives = 44/76 (57%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I++++++++++I+++++ + + +I + ++ + + +I++ I + I++ I+
Sbjct: 4 LILLLLLLLLLLILLLLLSLSLGAVISLSDVLQALFGLDGSGKHVIVLDIRLPRILLAIL 63
Query: 137 IIIIIIIIIIIIIDLI 152
+ + + ++ +
Sbjct: 64 VGAALAVAGALLQGVT 79
>gnl|CDD|190033 pfam01554, MatE, MatE. The MatE domain.
Length = 161
Score = 34.5 bits (80), Expect = 0.069
Identities = 12/97 (12%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIII 126
KR+ + +I+ ++I + I ++II+ I+ + ++ + + I+ + I
Sbjct: 65 FKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILALGIPF 124
Query: 127 IIIIIIIIII-------IIIIIIIIIIIIIDLIFDFT 156
+ + ++ + I +I +++++ ++
Sbjct: 125 LSLQFVLSGFLRGAGDTKPPLYINLISLLLNIPLNYL 161
Score = 29.8 bits (68), Expect = 2.4
Identities = 9/67 (13%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIDLIFD 154
+ + +I+ ++I + I ++II+ I+ + ++ + + I+ + I +
Sbjct: 70 VALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILALGIPFLSLQF 129
Query: 155 FTFMYLK 161
+L+
Sbjct: 130 VLSGFLR 136
>gnl|CDD|206207 pfam14037, YoqO, YoqO-like protein. The YoqO-like protein family
includes the B. subtilis YoqO protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria and viruses. Proteins in this family
are approximately 120 amino acids in length. There are
two completely conserved residues (I and Y) that may be
functionally important.
Length = 117
Score = 33.8 bits (78), Expect = 0.075
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ S+ +III I +I+I+ I +++ + I I + I I+ II I+ I +
Sbjct: 49 KTYSRKSLIIIGIEFVILILTIPFLLLKGQDQMDSIPIFQGWLTIAKILYIIGILFIALN 108
Query: 131 IIIII 135
I I
Sbjct: 109 IFKKI 113
Score = 30.4 bits (69), Expect = 1.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+III I +I+I+ I +++ + I I + I I+ II I+ I + I I D
Sbjct: 56 LIIIGIEFVILILTIPFLLLKGQDQMDSIPIFQGWLTIAKILYIIGILFIALNIFKKIND 115
Query: 151 LI 152
+
Sbjct: 116 KL 117
>gnl|CDD|100080 cd06159, S2P-M50_PDZ_Arch, Uncharacterized Archaeal homologs of
Site-2 protease (S2P), zinc metalloproteases (MEROPS
family M50) which cleave transmembrane domains of
substrate proteins, regulating intramembrane proteolysis
(RIP) of diverse signal transduction mechanisms. Members
of the S2P/M50 family of RIP proteases use proteolytic
activity within the membrane to transfer information
across membranes to integrate gene expression with
physiologic stresses occurring in another cellular
compartment. In eukaryotic cells they regulate such
processes as sterol and lipid metabolism, and
endoplasmic reticulum stress responses. In prokaryotes
they regulate such processes as sporulation, cell
division, stress response, and cell differentiation.
This group appears to be limited to Archaeal S2P/M50s
homologs with additional putative N-terminal
transmembrane spanning regions, relative to the core
protein, and either one or two PDZ domains present.
Length = 263
Score = 35.4 bits (82), Expect = 0.082
Identities = 13/74 (17%), Positives = 37/74 (50%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ ++ I I I + +I ++++I++ III+ + +++I + I I
Sbjct: 50 RPKRFWRAFGNIGIPIAFVGMIFMLLLILLSAIIILSGPPAPLNAPRNVLVIPGVNIFIP 109
Query: 132 IIIIIIIIIIIIII 145
+ II +++ +++
Sbjct: 110 LPYGIIALVVGVVV 123
Score = 35.0 bits (81), Expect = 0.10
Identities = 15/73 (20%), Positives = 36/73 (49%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
KR I I I + +I ++++I++ III+ + +++I + I I +
Sbjct: 51 PKRFWRAFGNIGIPIAFVGMIFMLLLILLSAIIILSGPPAPLNAPRNVLVIPGVNIFIPL 110
Query: 131 IIIIIIIIIIIII 143
II +++ +++
Sbjct: 111 PYGIIALVVGVVV 123
Score = 35.0 bits (81), Expect = 0.11
Identities = 14/74 (18%), Positives = 37/74 (50%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
R + + I I I + +I ++++I++ III+ + +++I + I I
Sbjct: 50 RPKRFWRAFGNIGIPIAFVGMIFMLLLILLSAIIILSGPPAPLNAPRNVLVIPGVNIFIP 109
Query: 131 IIIIIIIIIIIIII 144
+ II +++ +++
Sbjct: 110 LPYGIIALVVGVVV 123
Score = 34.2 bits (79), Expect = 0.20
Identities = 13/67 (19%), Positives = 34/67 (50%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I I I + +I ++++I++ III+ + +++I + I I + II
Sbjct: 57 AFGNIGIPIAFVGMIFMLLLILLSAIIILSGPPAPLNAPRNVLVIPGVNIFIPLPYGIIA 116
Query: 140 IIIIIII 146
+++ +++
Sbjct: 117 LVVGVVV 123
Score = 34.2 bits (79), Expect = 0.20
Identities = 13/67 (19%), Positives = 34/67 (50%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I I I + +I ++++I++ III+ + +++I + I I + II
Sbjct: 57 AFGNIGIPIAFVGMIFMLLLILLSAIIILSGPPAPLNAPRNVLVIPGVNIFIPLPYGIIA 116
Query: 141 IIIIIII 147
+++ +++
Sbjct: 117 LVVGVVV 123
Score = 34.2 bits (79), Expect = 0.20
Identities = 13/67 (19%), Positives = 34/67 (50%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I I I + +I ++++I++ III+ + +++I + I I + II
Sbjct: 57 AFGNIGIPIAFVGMIFMLLLILLSAIIILSGPPAPLNAPRNVLVIPGVNIFIPLPYGIIA 116
Query: 142 IIIIIII 148
+++ +++
Sbjct: 117 LVVGVVV 123
Score = 34.2 bits (79), Expect = 0.20
Identities = 13/67 (19%), Positives = 34/67 (50%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I I I + +I ++++I++ III+ + +++I + I I + II
Sbjct: 57 AFGNIGIPIAFVGMIFMLLLILLSAIIILSGPPAPLNAPRNVLVIPGVNIFIPLPYGIIA 116
Query: 143 IIIIIII 149
+++ +++
Sbjct: 117 LVVGVVV 123
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 274
Score = 35.3 bits (82), Expect = 0.083
Identities = 8/82 (9%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIII 132
++I I+++I+ ++ +++ + +I +I + I++I + ++ +++
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 133 IIIIIIIIIIIIIIIIIDLIFD 154
+ + I + +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLR 82
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 119
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.5 bits (72), Expect = 1.3
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 31.1 bits (71), Expect = 1.9
Identities = 4/45 (8%), Positives = 22/45 (48%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
K + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 117 DKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 29.6 bits (67), Expect = 4.9
Identities = 3/43 (6%), Positives = 21/43 (48%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ + + ++ I++ + ++++ I+ ++I++ +
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
Score = 29.2 bits (66), Expect = 6.7
Identities = 3/43 (6%), Positives = 22/43 (51%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ + + ++ I++ + ++++ I+ ++I++ ++
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVL 161
>gnl|CDD|202705 pfam03626, COX4_pro, Prokaryotic Cytochrome C oxidase subunit IV.
Cytochrome c oxidase (COX) is a multi-subunit enzyme
complex that catalyzes the final step of electron
transfer through the respiratory chain on the
mitochondrial inner membrane. This family is composed of
cytochrome c oxidase subunit 4 from prokaryotes.
Length = 75
Score = 32.5 bits (75), Expect = 0.083
Identities = 8/75 (10%), Positives = 44/75 (58%), Gaps = 9/75 (12%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIII 126
Y+I+ ++++++ I + + + + +++ +I+ + ++ ++I++ + +
Sbjct: 1 YLIVFLLLLVLTAISFALAMAGGLSLNLLVALILALAVVKALLILLYFMHLRHEPRLFRL 60
Query: 127 IIIIIIIIIIIIIII 141
+I++I+++ ++I++
Sbjct: 61 LILLILVLGSLLIML 75
Score = 30.5 bits (70), Expect = 0.49
Identities = 7/75 (9%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIII 129
+I+ ++++++ I + + + + +++ +I+ + ++ ++I++ + +
Sbjct: 1 YLIVFLLLLVLTAISFALAMAGGLSLNLLVALILALAVVKALLILLYFMHLRHEPRLFRL 60
Query: 130 IIIIIIIIIIIIIII 144
+I++I+++ ++I++
Sbjct: 61 LILLILVLGSLLIML 75
Score = 30.5 bits (70), Expect = 0.49
Identities = 7/75 (9%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIII 130
+I+ ++++++ I + + + + +++ +I+ + ++ ++I++ + +
Sbjct: 1 YLIVFLLLLVLTAISFALAMAGGLSLNLLVALILALAVVKALLILLYFMHLRHEPRLFRL 60
Query: 131 IIIIIIIIIIIIIII 145
+I++I+++ ++I++
Sbjct: 61 LILLILVLGSLLIML 75
Score = 30.5 bits (70), Expect = 0.49
Identities = 7/75 (9%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIII 131
+I+ ++++++ I + + + + +++ +I+ + ++ ++I++ + +
Sbjct: 1 YLIVFLLLLVLTAISFALAMAGGLSLNLLVALILALAVVKALLILLYFMHLRHEPRLFRL 60
Query: 132 IIIIIIIIIIIIIII 146
+I++I+++ ++I++
Sbjct: 61 LILLILVLGSLLIML 75
Score = 30.5 bits (70), Expect = 0.49
Identities = 7/75 (9%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIII 132
+I+ ++++++ I + + + + +++ +I+ + ++ ++I++ + +
Sbjct: 1 YLIVFLLLLVLTAISFALAMAGGLSLNLLVALILALAVVKALLILLYFMHLRHEPRLFRL 60
Query: 133 IIIIIIIIIIIIIII 147
+I++I+++ ++I++
Sbjct: 61 LILLILVLGSLLIML 75
Score = 30.5 bits (70), Expect = 0.49
Identities = 7/75 (9%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIII 133
+I+ ++++++ I + + + + +++ +I+ + ++ ++I++ + +
Sbjct: 1 YLIVFLLLLVLTAISFALAMAGGLSLNLLVALILALAVVKALLILLYFMHLRHEPRLFRL 60
Query: 134 IIIIIIIIIIIIIII 148
+I++I+++ ++I++
Sbjct: 61 LILLILVLGSLLIML 75
Score = 30.5 bits (70), Expect = 0.49
Identities = 7/75 (9%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIII 134
+I+ ++++++ I + + + + +++ +I+ + ++ ++I++ + +
Sbjct: 1 YLIVFLLLLVLTAISFALAMAGGLSLNLLVALILALAVVKALLILLYFMHLRHEPRLFRL 60
Query: 135 IIIIIIIIIIIIIII 149
+I++I+++ ++I++
Sbjct: 61 LILLILVLGSLLIML 75
Score = 29.0 bits (66), Expect = 1.8
Identities = 6/51 (11%), Positives = 30/51 (58%), Gaps = 9/51 (17%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIII 115
S +++ +I+ + ++ ++I++ + ++I++I+++ ++I++
Sbjct: 25 SLNLLVALILALAVVKALLILLYFMHLRHEPRLFRLLILLILVLGSLLIML 75
>gnl|CDD|221085 pfam11337, DUF3139, Protein of unknown function (DUF3139). This
family of proteins with unknown function appears to be
restricted to Firmicutes.
Length = 85
Score = 32.8 bits (75), Expect = 0.084
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIII 97
KY +I I+II+I+I + + I++
Sbjct: 2 KKYKVIFIVIILIVISLFVGIVLF 25
Score = 28.9 bits (65), Expect = 2.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIII 95
K+ K I I+II+I+I + + I++
Sbjct: 2 KKYKVIFIVIILIVISLFVGIVLF 25
Score = 28.1 bits (63), Expect = 4.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 132 IIIIIIIIIIIIIIIIIIDLIF 153
+I I+II+I+I + + I L F
Sbjct: 5 KVIFIVIILIVISLFVGIVLFF 26
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 81 IIIIIIIIIIIIIIIIIIIII 101
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 82 IIIIIIIIIIIIIIIIIIIII 102
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 83 IIIIIIIIIIIIIIIIIIIII 103
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 84 IIIIIIIIIIIIIIIIIIIII 104
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 85 IIIIIIIIIIIIIIIIIIIII 105
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 86 IIIIIIIIIIIIIIIIIIIII 106
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 87 IIIIIIIIIIIIIIIIIIIII 107
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 88 IIIIIIIIIIIIIIIIIIIII 108
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 89 IIIIIIIIIIIIIIIIIIIII 109
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 90 IIIIIIIIIIIIIIIIIIIII 110
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 91 IIIIIIIIIIIIIIIIIIIII 111
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 92 IIIIIIIIIIIIIIIIIIIII 112
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 93 IIIIIIIIIIIIIIIIIIIII 113
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 94 IIIIIIIIIIIIIIIIIIIII 114
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 95 IIIIIIIIIIIIIIIIIIIII 115
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 96 IIIIIIIIIIIIIIIIIIIII 116
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 97 IIIIIIIIIIIIIIIIIIIII 117
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 98 IIIIIIIIIIIIIIIIIIIII 118
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 99 IIIIIIIIIIIIIIIIIIIII 119
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 100 IIIIIIIIIIIIIIIIIIIII 120
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 101 IIIIIIIIIIIIIIIIIIIII 121
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 102 IIIIIIIIIIIIIIIIIIIII 122
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 103 IIIIIIIIIIIIIIIIIIIII 123
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 104 IIIIIIIIIIIIIIIIIIIII 124
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 105 IIIIIIIIIIIIIIIIIIIII 125
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 106 IIIIIIIIIIIIIIIIIIIII 126
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 107 IIIIIIIIIIIIIIIIIIIII 127
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 108 IIIIIIIIIIIIIIIIIIIII 128
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 109 IIIIIIIIIIIIIIIIIIIII 129
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 110 IIIIIIIIIIIIIIIIIIIII 130
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 111 IIIIIIIIIIIIIIIIIIIII 131
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 112 IIIIIIIIIIIIIIIIIIIII 132
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 113 IIIIIIIIIIIIIIIIIIIII 133
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 114 IIIIIIIIIIIIIIIIIIIII 134
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 115 IIIIIIIIIIIIIIIIIIIII 135
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 116 IIIIIIIIIIIIIIIIIIIII 136
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 117 IIIIIIIIIIIIIIIIIIIII 137
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 118 IIIIIIIIIIIIIIIIIIIII 138
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 119 IIIIIIIIIIIIIIIIIIIII 139
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 120 IIIIIIIIIIIIIIIIIIIII 140
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 121 IIIIIIIIIIIIIIIIIIIII 141
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 122 IIIIIIIIIIIIIIIIIIIII 142
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 123 IIIIIIIIIIIIIIIIIIIII 143
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 124 IIIIIIIIIIIIIIIIIIIII 144
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 125 IIIIIIIIIIIIIIIIIIIII 145
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 126 IIIIIIIIIIIIIIIIIIIII 146
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 127 IIIIIIIIIIIIIIIIIIIII 147
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 128 IIIIIIIIIIIIIIIIIIIII 148
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 129 IIIIIIIIIIIIIIIIIIIII 149
+I I+II+I+I + + I++
Sbjct: 5 KVIFIVIILIVISLFVGIVLF 25
>gnl|CDD|133464 cd06854, GT_WbpL_WbcO_like, The members of this subfamily catalyze
the formation of a phosphodiester bond between a
membrane-associated undecaprenyl-phosphate (Und-P)
molecule and N-acetylhexosamine 1-phosphate, which is
usually donated by a soluble UDP-N-acetylhexosamine
precursor. The WbcO/WbpL substrate specificity has not
yet been determined, but the structure of their
biosynthetic end products implies that
UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or
UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The
subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P
transferases includes the WbcO protein from Yersinia
enterocolitica and the WbpL protein from Pseudomonas
aeruginosa. These transferases initiate LPS O-antigen
biosynthesis. Similar to other GlcNAc/MurNAc-1-P
transferase family members, WbpL is a highly hydrophobic
protein possessing 11 predicted transmembrane segments.
Length = 253
Score = 35.3 bits (82), Expect = 0.088
Identities = 9/104 (8%), Positives = 45/104 (43%), Gaps = 26/104 (25%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIII 123
I ++ ++ +++ + + ++++I ++++ + +++ ++
Sbjct: 21 IAFVLAFLLALLLAAAAGPLNDLSYLLLLIGLLLLAAVGFIDDLRSLSPKIRLLVQLLAA 80
Query: 124 IIIIIII---------IIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+ + + + +I +++++ I+ II+L + FM
Sbjct: 81 ALALYALGPLTSLLLNFLPPWLIALLLLLAIVWIINL---YNFM 121
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 35.0 bits (81), Expect = 0.094
Identities = 11/126 (8%), Positives = 52/126 (41%), Gaps = 44/126 (34%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIII----------------IIIIIIIIIIIIIIIIIII-- 114
R + + +I+ ++++ + + I+ I+++ +I +++ +++ + +
Sbjct: 56 RLEPLAALIVSLLLLGVGVFILYESIERLISPEEIEPGGILLVALISLVVNLLLALYLRR 115
Query: 115 --------------------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ ++I +++I++ + I + ++I ++I+
Sbjct: 116 AGRKIGKKSSALRADALHALVDVLGSLAVLIGLLLILLTGLPIADPLASLLIALLILYTG 175
Query: 149 IDLIFD 154
+ L+ +
Sbjct: 176 LRLLKE 181
Score = 31.5 bits (72), Expect = 1.4
Identities = 9/105 (8%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIII 122
I+++ +I +++ +++ + + I + + ++I +++I++
Sbjct: 94 GILLVALISLVVNLLLALYLRRAGRKIGKKSSALRADALHALVDVLGSLAVLIGLLLILL 153
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQ 167
+ I + ++I ++I+ + ++ + + + V++
Sbjct: 154 TGLPIADPLASLLIALLILYTGLRLLKESLSELLGASPDPELVDE 198
>gnl|CDD|217169 pfam02660, G3P_acyltransf, Glycerol-3-phosphate acyltransferase.
This family of enzymes catalyzes the transfer of an acyl
group from acyl-ACP to glycerol-3-phosphate to form
lysophosphatidic acid.
Length = 178
Score = 34.4 bits (80), Expect = 0.095
Identities = 5/64 (7%), Positives = 36/64 (56%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+++ + ++ +I + + +++++I + + ++ ++ I++ + + ++ +I+ +
Sbjct: 105 VLLALSPLVALIALAVWLLVLLITRYVSLASLVAALLFPILVWLFGGPLEYLLFALILAL 164
Query: 137 IIII 140
++I
Sbjct: 165 LVIY 168
Score = 34.4 bits (80), Expect = 0.095
Identities = 5/64 (7%), Positives = 36/64 (56%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+++ + ++ +I + + +++++I + + ++ ++ I++ + + ++ +I+ +
Sbjct: 105 VLLALSPLVALIALAVWLLVLLITRYVSLASLVAALLFPILVWLFGGPLEYLLFALILAL 164
Query: 138 IIII 141
++I
Sbjct: 165 LVIY 168
Score = 34.4 bits (80), Expect = 0.095
Identities = 5/64 (7%), Positives = 36/64 (56%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+++ + ++ +I + + +++++I + + ++ ++ I++ + + ++ +I+ +
Sbjct: 105 VLLALSPLVALIALAVWLLVLLITRYVSLASLVAALLFPILVWLFGGPLEYLLFALILAL 164
Query: 139 IIII 142
++I
Sbjct: 165 LVIY 168
Score = 34.4 bits (80), Expect = 0.095
Identities = 5/64 (7%), Positives = 36/64 (56%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+++ + ++ +I + + +++++I + + ++ ++ I++ + + ++ +I+ +
Sbjct: 105 VLLALSPLVALIALAVWLLVLLITRYVSLASLVAALLFPILVWLFGGPLEYLLFALILAL 164
Query: 140 IIII 143
++I
Sbjct: 165 LVIY 168
Score = 34.4 bits (80), Expect = 0.095
Identities = 5/64 (7%), Positives = 36/64 (56%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+++ + ++ +I + + +++++I + + ++ ++ I++ + + ++ +I+ +
Sbjct: 105 VLLALSPLVALIALAVWLLVLLITRYVSLASLVAALLFPILVWLFGGPLEYLLFALILAL 164
Query: 141 IIII 144
++I
Sbjct: 165 LVIY 168
Score = 34.4 bits (80), Expect = 0.095
Identities = 5/64 (7%), Positives = 36/64 (56%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+++ + ++ +I + + +++++I + + ++ ++ I++ + + ++ +I+ +
Sbjct: 105 VLLALSPLVALIALAVWLLVLLITRYVSLASLVAALLFPILVWLFGGPLEYLLFALILAL 164
Query: 142 IIII 145
++I
Sbjct: 165 LVIY 168
Score = 34.4 bits (80), Expect = 0.095
Identities = 5/64 (7%), Positives = 36/64 (56%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+++ + ++ +I + + +++++I + + ++ ++ I++ + + ++ +I+ +
Sbjct: 105 VLLALSPLVALIALAVWLLVLLITRYVSLASLVAALLFPILVWLFGGPLEYLLFALILAL 164
Query: 143 IIII 146
++I
Sbjct: 165 LVIY 168
Score = 34.4 bits (80), Expect = 0.095
Identities = 5/64 (7%), Positives = 36/64 (56%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+++ + ++ +I + + +++++I + + ++ ++ I++ + + ++ +I+ +
Sbjct: 105 VLLALSPLVALIALAVWLLVLLITRYVSLASLVAALLFPILVWLFGGPLEYLLFALILAL 164
Query: 144 IIII 147
++I
Sbjct: 165 LVIY 168
Score = 34.4 bits (80), Expect = 0.095
Identities = 5/64 (7%), Positives = 36/64 (56%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+++ + ++ +I + + +++++I + + ++ ++ I++ + + ++ +I+ +
Sbjct: 105 VLLALSPLVALIALAVWLLVLLITRYVSLASLVAALLFPILVWLFGGPLEYLLFALILAL 164
Query: 145 IIII 148
++I
Sbjct: 165 LVIY 168
Score = 34.4 bits (80), Expect = 0.095
Identities = 5/64 (7%), Positives = 36/64 (56%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+++ + ++ +I + + +++++I + + ++ ++ I++ + + ++ +I+ +
Sbjct: 105 VLLALSPLVALIALAVWLLVLLITRYVSLASLVAALLFPILVWLFGGPLEYLLFALILAL 164
Query: 146 IIII 149
++I
Sbjct: 165 LVIY 168
Score = 29.8 bits (68), Expect = 3.4
Identities = 5/59 (8%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 76 YIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
++ +I + + +++++I ++ ++ I++ + + ++ +I+ +++I
Sbjct: 110 SPLVALIALAVWLLVLLITRYVSLASLVAALLFPILVWLFGGPLEYLLFALILALLVIY 168
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily
[General function prediction only].
Length = 727
Score = 35.7 bits (83), Expect = 0.098
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+I ++ II++ +++II + II +I I I + ++F M L
Sbjct: 571 LISTVLGIILVFALLLIIFRSPLKAIIPLIPIAIVVGWNFGLMGL 615
Score = 35.0 bits (81), Expect = 0.17
Identities = 17/93 (18%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--IIIIIIIIIIIIIIIIIIIIIIIII 133
I + + ++ +I ++ II++ +++II + II +I I I++ ++ ++
Sbjct: 557 VIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSPLKAIIPLIPIAIVVGWNFGLMGLL 616
Query: 134 IIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVE 166
I + + II+ + D++ + +R E
Sbjct: 617 GIPLTPATATLGAIILGIGVDYSIHITERYREE 649
>gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family. The members
of this family are integral membrane protein
cytidylyltransferases. The family includes phosphatidate
cytidylyltransferase EC:2.7.7.41 as well as Sec59 from
yeast. Sec59 is a dolichol kinase EC:2.7.1.108.
Length = 259
Score = 35.0 bits (81), Expect = 0.11
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFL 172
II I++I+I +I++ + +I ++++ III +++ + +F L
Sbjct: 4 IITHIVLILIFLILLFLGPLIFLLLVAAIIILALYELIRLLRLKFSSRLLLLTR 57
Score = 33.5 bits (77), Expect = 0.30
Identities = 16/124 (12%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------------IIIIIIIIII 118
II I++I+I +I++ + +I ++++ III+ ++ + +I
Sbjct: 4 IITHIVLILIFLILLFLGPLIFLLLVAAIIILALYELIRLLRLKFSSRLLLLTRGLGLIF 63
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQ 178
++ ++++ ++ + +++++I ++ +++ + + + + LFL
Sbjct: 64 YLLGLLLVYGEGLLALFGLVLLVIPVLWLLVLPVLAYHRVSSTLLPLFYVGLFLSLLLIT 123
Query: 179 HRPF 182
+ F
Sbjct: 124 NPFF 127
>gnl|CDD|153009 pfam12575, DUF3753, Protein of unknown function (DUF3753). This
family of proteins is found in viruses. Proteins in this
family are approximately 70 amino acids in length. There
is a conserved YLK sequence motif. There are two
completely conserved residues (D and F) that may be
functionally important.
Length = 72
Score = 32.3 bits (74), Expect = 0.11
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 11/37 (29%)
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
II+II II ++II++ TF+YLK
Sbjct: 45 NSNWIILIITIIAVVIIVL-----------LTFLYLK 70
Score = 30.3 bits (69), Expect = 0.54
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIII 100
R + II+II II ++II+++ + +
Sbjct: 38 KRRSSNTNSNWIILIITIIAVVIIVLLTFLYL 69
Score = 29.2 bits (66), Expect = 1.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIII 101
R+ S II+II II ++II+++ + +
Sbjct: 39 RRSSNTNSNWIILIITIIAVVIIVLLTFLYL 69
Score = 29.2 bits (66), Expect = 1.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIII 103
KR II+II II ++II+++ + +
Sbjct: 38 KRRSSNTNSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIII 104
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIII 105
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIII 106
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIII 107
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIII 108
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIII 109
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIII 110
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIII 111
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIII 112
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIII 113
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIII 114
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIII 115
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIII 116
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIII 117
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIII 118
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIII 119
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIII 120
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIII 121
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIII 122
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIII 123
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIII 124
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIII 125
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIII 126
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIII 127
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIII 128
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIII 129
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIII 130
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIII 131
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIII 132
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIII 133
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIII 134
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIII 135
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
>gnl|CDD|233565 TIGR01770, NDH_I_N, proton-translocating NADH-quinone
oxidoreductase, chain N. This model describes the 14th
(based on E. coli) structural gene, N, of bacterial and
chloroplast energy-transducing NADH (or NADPH)
dehydrogenases. This model does not describe any subunit
of the mitochondrial complex I (for which the subunit
composition is very different), nor NADH dehydrogenases
that are not coupled to ion transport. The Enzyme
Commission designation 1.6.5.3, for NADH dehydrogenase
(ubiquinone), is applied broadly, perhaps unfortunately,
even if the quinone is menaquinone (Thermus,
Mycobacterium) or plastoquinone (chloroplast). For
chloroplast members, the name NADH-plastoquinone
oxidoreductase is used for the complex and this protein
is designated as subunit 2 or B. This model also
includes a subunit of a related complex in the archaeal
methanogen, Methanosarcina mazei, in which F420H2
replaces NADH and 2-hydroxyphenazine replaces the
quinone [Energy metabolism, Electron transport].
Length = 468
Score = 35.3 bits (82), Expect = 0.11
Identities = 10/107 (9%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIII 120
+ F ++ + +++ + I+++ +++ + + + + I+ +II +I
Sbjct: 19 LYGLFYSRKKRNPLLLKNLFYIVLLSLLVSLFLTLQYASYLFFGFSFFIVDNFSLIIKLI 78
Query: 121 IIIIIIIIIII---------------IIIIIIIIIIIIIIIIIIDLI 152
+++ +++ I+++ ++ I +++ DL+
Sbjct: 79 LLLSTLLLFFFALSYFSKEKINKFEFYILLLFALLGIFLLVSSNDLL 125
Score = 32.2 bits (74), Expect = 1.0
Identities = 13/107 (12%), Positives = 44/107 (41%), Gaps = 22/107 (20%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIII------- 123
I I+ II+++ I+++ + +++ + I+++ +++ + + +
Sbjct: 1 LIAILPEIILLLGAFILLLYGLFYSRKKRNPLLLKNLFYIVLLSLLVSLFLTLQYASYLF 60
Query: 124 ----------IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+II +I+++ +++ + + I F F L
Sbjct: 61 FGFSFFIVDNFSLIIKLILLLSTLLLFFFALSYFSKEKINKFEFYIL 107
Score = 32.2 bits (74), Expect = 1.1
Identities = 10/76 (13%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+I I+ II+++ I+++ + +++ + I+++ +++ + + + F
Sbjct: 1 LIAILPEIILLLGAFILLLYGLFYSRKKRNPLLLKNLFYIVLLSLLVSLFLTLQYASYLF 60
Query: 158 MYLKEFRVEQCPLFLQ 173
F V+ L ++
Sbjct: 61 FGFSFFIVDNFSLIIK 76
>gnl|CDD|223659 COG0586, DedA, Uncharacterized membrane-associated protein
[Function unknown].
Length = 208
Score = 34.6 bits (80), Expect = 0.12
Identities = 3/59 (5%), Positives = 41/59 (69%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++++ I+ ++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 141 RFLLYNILGALLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.5 bits (72), Expect = 1.1
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
++ +++ ++ ++ +I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 151 LLWALVLTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.1 bits (71), Expect = 1.4
Identities = 2/35 (5%), Positives = 26/35 (74%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 108
+ I +++ ++++++ I+++ ++++++++ ++ +
Sbjct: 165 GEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 29.9 bits (68), Expect = 3.6
Identities = 1/29 (3%), Positives = 19/29 (65%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIII 100
++++ I+++ ++++++++ ++ +
Sbjct: 171 LVHLLLVLLGILVLAVLVLVLLLALLWWL 199
>gnl|CDD|203089 pfam04789, DUF621, Protein of unknown function (DUF621). Family of
uncharacterized proteins. Some are annotated as having
possible G-protein-coupled receptor-like activity.
Length = 335
Score = 35.0 bits (80), Expect = 0.12
Identities = 37/120 (30%), Positives = 43/120 (35%), Gaps = 16/120 (13%)
Query: 60 TATKCMVCE----FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 115
T KC CE K K I I + I+II I+ I I I I II II I
Sbjct: 177 TPLKCEKCEQKGLTNLKSLKGGIGGIFLNFILIIKILKIFQIENIENIGIIGIIFGIFCA 236
Query: 116 IIIIIIII------------IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
I II I + I+I I II +I I I F K F
Sbjct: 237 ICAIIAKIAQMKLSKLEKNELKILIFSFFAFQAFQISFIIALIAEIIEITAFLAFLFKNF 296
>gnl|CDD|115811 pfam07181, VirC2, VirC2 protein. This family consists of several
VirC2 proteins which seem to be found exclusively in
Agrobacterium species and Rhizobium etli. VirC2 is known
to be involved in virulence in Agrobacterium species but
its exact function is unclear.
Length = 202
Score = 34.5 bits (79), Expect = 0.12
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 654 SALSSNNFSPTTS-SPLSHFLSSRPPAPGFGTTADNL 689
S L+ + S TT+ + FLS+RPPAP DNL
Sbjct: 66 SMLTVDALSSTTAPEKVQVFLSARPPAPEVSKIYDNL 102
>gnl|CDD|200429 TIGR04178, exo_archaeo, exosortase/archaeosortase family protein.
This model represents the most conserved region of the
multitransmembrane protein family of exosortases and
archaeosortases. The region includes nearly invariant
motifs at the ends of three predicted transmembrane
helices on the extracytoplasmic face: a Cys (often
Cys-Xaa-Gly), Asn-Xaa-Xaa-Arg, and His. This model is
much broader than the bacterial exosortase model
(TIGR02602), and has in intended scope similar to (or
broader than) pfam09721.
Length = 97
Score = 32.6 bits (75), Expect = 0.12
Identities = 6/75 (8%), Positives = 38/75 (50%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+ + + ++++++ + II + I+ I+++I++ I+ ++
Sbjct: 21 LLFAYLFPRSLRRKLLLLLLGVPIIYLANILRIVLLILLGYYFGPEAFEFAHDILGWLLF 80
Query: 124 IIIIIIIIIIIIIII 138
+++ ++++ +++ ++
Sbjct: 81 LLVALLLLWLVLWLL 95
Score = 28.7 bits (65), Expect = 2.5
Identities = 8/61 (13%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 103 IIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+ +I+++ + ++ + ++++++ + II + I+ I+++I++ F+
Sbjct: 10 LRSLILLLALGLLFAYLFPRSLRRKLLLLLLGVPIIYLANILRIVLLILLGYYFGPEAFE 69
Query: 155 F 155
F
Sbjct: 70 F 70
>gnl|CDD|224970 COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion
transport and metabolism].
Length = 195
Score = 34.1 bits (79), Expect = 0.12
Identities = 9/94 (9%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 77 IIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIII 120
I+I++ + +++ I+ + II +++ + + + + ++ +
Sbjct: 92 ILIMLGLALLLKRFGDLPLVKGILKGLKPAIIALVLQAVWRLGKKALKGRGWVGLAVLTV 151
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
I I+++ + ++II+ ++ ++ +
Sbjct: 152 IAILLLPTKFVHPLVIILAGLLGWLLGLKPKSKR 185
Score = 31.1 bits (71), Expect = 1.4
Identities = 11/90 (12%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 81 IIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
I+I++ + +++ I+ + II +++ + + + + + ++ +
Sbjct: 92 ILIMLGLALLLKRFGDLPLVKGILKGLKPAIIALVLQAVWRLGKKALKGRGWVGLAVLTV 151
Query: 133 IIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
I I+++ + ++II + LK
Sbjct: 152 IAILLLPTKFVHPLVIILAGLLGWLLGLKP 181
>gnl|CDD|221706 pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family.
Length = 263
Score = 34.6 bits (80), Expect = 0.12
Identities = 13/124 (10%), Positives = 48/124 (38%), Gaps = 42/124 (33%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIII--------------------IIIIIIIIIIIIIII 107
+ +R RS +++++++ ++++ + + + II +I
Sbjct: 10 KLIRSRSFWLLLLLLPLLLLALAFLPSLGDDLFSGLKSAVELDSAFEYVSAGSGIIAFLI 69
Query: 108 IIIIIIIIIIIII--------------------III--IIIIIIIIIIIIIIIIIIIIII 145
+I ++ I I++ +I ++ + +I+ I I++ +++
Sbjct: 70 PLIAAVLGSDAIAGEKERGTLKLLLSRPVSRSEILLGKLIGLLAVGLILAIAILVGVLLA 129
Query: 146 IIII 149
+ +
Sbjct: 130 LAVT 133
Score = 29.6 bits (67), Expect = 5.3
Identities = 10/107 (9%), Positives = 48/107 (44%), Gaps = 19/107 (17%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIII 124
K I ++ + +I+ I I++ +++ + + ++++++ +++++ ++ + +
Sbjct: 106 GKLIGLLAVGLILAIAILVGVLLALAVTAALGDSLSLGDLLLLVLASVLLLLALLFLSLG 165
Query: 125 III----------IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
++I + + ++ I+ I++ I + + L
Sbjct: 166 LLISTVLRSTATAAAAALGLFFVLSILSGILLAGILKLEELLDFLLF 212
>gnl|CDD|172383 PRK13862, PRK13862, putative crown gall tumor protein VirC2;
Provisional.
Length = 201
Score = 34.4 bits (79), Expect = 0.12
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 654 SALSSNNFSPTTSSP-LSHFLSSRPPAPGFGTTADNL 689
S L+++ S TT+ + FLS+RPPAP DNL
Sbjct: 66 SMLTADALSSTTAPEKVQVFLSARPPAPEVSKIYDNL 102
>gnl|CDD|222380 pfam13787, HXXEE, Protein of unknown function with HXXEE motif.
This domain contains an HXXEE motif, another conserved
histidine and a YXPG motif. Its function is unknown.
Length = 115
Score = 33.0 bits (76), Expect = 0.12
Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 15/98 (15%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
++ K + + I ++I I++++ + ++ +I + I
Sbjct: 18 GFPPWINKNRSKLDEKDRYPLNTTSAFAIAVLIEFILVLLATFLALLFGNSLIWGLAFIA 77
Query: 125 IIIIIIIIIII---------------IIIIIIIIIIII 147
I + ++ II I++ + I + I
Sbjct: 78 FIFLNLLQHIIQAFIFRKYNPGLITAILLFLPISLYAI 115
Score = 31.8 bits (73), Expect = 0.33
Identities = 7/43 (16%), Positives = 21/43 (48%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I ++I I++++ + ++ +I + I I ++L+
Sbjct: 43 AFAIAVLIEFILVLLATFLALLFGNSLIWGLAFIAFIFLNLLQ 85
Score = 30.3 bits (69), Expect = 1.2
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I ++I I++++ + ++ +I + I I + ++ II IF
Sbjct: 43 AFAIAVLIEFILVLLATFLALLFGNSLIWGLAFIAFIFLNLLQHIIQAFIF 93
Score = 29.5 bits (67), Expect = 1.9
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
I ++I I++++ + ++ +I + I I + ++ II I
Sbjct: 43 AFAIAVLIEFILVLLATFLALLFGNSLIWGLAFIAFIFLNLLQHIIQAFIF 93
Score = 29.5 bits (67), Expect = 1.9
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
I ++I I++++ + ++ +I + I I + ++ II I
Sbjct: 43 AFAIAVLIEFILVLLATFLALLFGNSLIWGLAFIAFIFLNLLQHIIQAFIF 93
Score = 29.1 bits (66), Expect = 2.5
Identities = 9/51 (17%), Positives = 24/51 (47%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
I ++I I++++ + ++ +I + I I + ++ +I F F
Sbjct: 43 AFAIAVLIEFILVLLATFLALLFGNSLIWGLAFIAFIFLNLLQHIIQAFIF 93
>gnl|CDD|206279 pfam14110, DUF4282, Domain of unknown function (DUF4282). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 93 and 155
amino acids in length. There is a single completely
conserved residue E that may be functionally important.
Length = 89
Score = 32.5 bits (75), Expect = 0.13
Identities = 6/73 (8%), Positives = 37/73 (50%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++I II ++ + +I+I + + + + + ++ +++ + ++ ++++
Sbjct: 6 DRFITPKIIKVLYWLGLILIGLFGLSGLFGGLATMAYSPGGGLLALLLGPLGFLLGLLLV 65
Query: 134 IIIIIIIIIIIII 146
+++ +++ + I
Sbjct: 66 RVVLELLVALFRI 78
>gnl|CDD|223604 COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and
metabolism].
Length = 320
Score = 34.9 bits (81), Expect = 0.13
Identities = 8/67 (11%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIII 127
I+I++ I +I I + +++ ++I++ +++++ + ++++ + I
Sbjct: 252 NILIVLGISALIGPITVEPSALLVDAPVLILVTLLLLLFLARRRRRIGRKEGLLLLGLYI 311
Query: 128 IIIIIII 134
+ + ++I
Sbjct: 312 VYVALLI 318
Score = 33.3 bits (77), Expect = 0.36
Identities = 6/49 (12%), Positives = 23/49 (46%)
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I+I++ I +I I + +++ ++I++ +++++
Sbjct: 253 ILIVLGISALIGPITVEPSALLVDAPVLILVTLLLLLFLARRRRRIGRK 301
Score = 32.6 bits (75), Expect = 0.72
Identities = 7/68 (10%), Positives = 38/68 (55%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I I++I+ + +I + + ++ I +++ +I++++++ + + I+++++
Sbjct: 84 NIFNILLILGLAALIAPLKVDSDVLRREIPFLLLATLILLLVLLDGHLSRLDGIVLLLLY 143
Query: 137 IIIIIIII 144
++ + ++
Sbjct: 144 VLYLYYLL 151
Score = 32.6 bits (75), Expect = 0.72
Identities = 7/68 (10%), Positives = 38/68 (55%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I I++I+ + +I + + ++ I +++ +I++++++ + + I+++++
Sbjct: 84 NIFNILLILGLAALIAPLKVDSDVLRREIPFLLLATLILLLVLLDGHLSRLDGIVLLLLY 143
Query: 138 IIIIIIII 145
++ + ++
Sbjct: 144 VLYLYYLL 151
Score = 32.6 bits (75), Expect = 0.72
Identities = 7/68 (10%), Positives = 38/68 (55%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I I++I+ + +I + + ++ I +++ +I++++++ + + I+++++
Sbjct: 84 NIFNILLILGLAALIAPLKVDSDVLRREIPFLLLATLILLLVLLDGHLSRLDGIVLLLLY 143
Query: 139 IIIIIIII 146
++ + ++
Sbjct: 144 VLYLYYLL 151
Score = 32.6 bits (75), Expect = 0.72
Identities = 7/68 (10%), Positives = 38/68 (55%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I I++I+ + +I + + ++ I +++ +I++++++ + + I+++++
Sbjct: 84 NIFNILLILGLAALIAPLKVDSDVLRREIPFLLLATLILLLVLLDGHLSRLDGIVLLLLY 143
Query: 140 IIIIIIII 147
++ + ++
Sbjct: 144 VLYLYYLL 151
Score = 32.6 bits (75), Expect = 0.72
Identities = 7/68 (10%), Positives = 38/68 (55%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I I++I+ + +I + + ++ I +++ +I++++++ + + I+++++
Sbjct: 84 NIFNILLILGLAALIAPLKVDSDVLRREIPFLLLATLILLLVLLDGHLSRLDGIVLLLLY 143
Query: 141 IIIIIIII 148
++ + ++
Sbjct: 144 VLYLYYLL 151
Score = 32.6 bits (75), Expect = 0.72
Identities = 7/68 (10%), Positives = 38/68 (55%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I I++I+ + +I + + ++ I +++ +I++++++ + + I+++++
Sbjct: 84 NIFNILLILGLAALIAPLKVDSDVLRREIPFLLLATLILLLVLLDGHLSRLDGIVLLLLY 143
Query: 142 IIIIIIII 149
++ + ++
Sbjct: 144 VLYLYYLL 151
Score = 32.2 bits (74), Expect = 0.89
Identities = 8/66 (12%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------IIIIIIIII 143
I+I++ I +I I + +++ ++I++ +++++ + ++++ + I+
Sbjct: 253 ILIVLGISALIGPITVEPSALLVDAPVLILVTLLLLLFLARRRRRIGRKEGLLLLGLYIV 312
Query: 144 IIIIII 149
+ ++I
Sbjct: 313 YVALLI 318
Score = 31.4 bits (72), Expect = 1.4
Identities = 11/74 (14%), Positives = 37/74 (50%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I I++I+ + +I + + ++ I +++ +I++++++ + + I+++ L
Sbjct: 84 NIFNILLILGLAALIAPLKVDSDVLRREIPFLLLATLILLLVLLDGHLSRLDGIVLLLLY 143
Query: 153 FDFTFMYLKEFRVE 166
+ + LK R
Sbjct: 144 VLYLYYLLKLSREA 157
Score = 30.6 bits (70), Expect = 2.4
Identities = 7/68 (10%), Positives = 37/68 (54%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I I++I+ + +I + + ++ I +++ +I++++++ + + I+++++
Sbjct: 84 NIFNILLILGLAALIAPLKVDSDVLRREIPFLLLATLILLLVLLDGHLSRLDGIVLLLLY 143
Query: 146 IIIIDLIF 153
++ + +
Sbjct: 144 VLYLYYLL 151
Score = 29.9 bits (68), Expect = 4.2
Identities = 6/66 (9%), Positives = 38/66 (57%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ I++I+ + +I + + ++ I +++ +I++++++ + + I+++++ ++
Sbjct: 86 FNILLILGLAALIAPLKVDSDVLRREIPFLLLATLILLLVLLDGHLSRLDGIVLLLLYVL 145
Query: 136 IIIIII 141
+ ++
Sbjct: 146 YLYYLL 151
Score = 29.1 bits (66), Expect = 8.1
Identities = 9/51 (17%), Positives = 27/51 (52%)
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
I+I++ I +I I + +++ ++I++ +++++ L + KE
Sbjct: 253 ILIVLGISALIGPITVEPSALLVDAPVLILVTLLLLLFLARRRRRIGRKEG 303
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 34.9 bits (81), Expect = 0.13
Identities = 19/115 (16%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 58 LQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 117
L+ ++ +F R K +I I+I ++ I I+ + I ++ ++ I++ + +
Sbjct: 324 LEVLVAALIDKFGISRKKATWLIGILIFLLGIPSILSFGLSIFDLVDFVVSNILMPLGAL 383
Query: 118 IIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+I I + ++ + I + ++ I I+I++++I ++ F
Sbjct: 384 LIAIFVGWVLKKELLREELNAGSAKLFKIWLYLVRYIAPIVILVVLILGFYELLF 438
>gnl|CDD|224537 COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit
2 [Energy production and conversion].
Length = 247
Score = 34.7 bits (80), Expect = 0.13
Identities = 10/69 (14%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIIIIIDL 151
+II+ +++++I++ +I++++ + I+ +I I+I+II
Sbjct: 33 LIILSTLLMLVIVLPVIVLLVYFAWKYRASNNAAPPQWHHNTKLEIVWTVIPILIVIILA 92
Query: 152 IFDFTFMYL 160
+ +
Sbjct: 93 VPTVITTHK 101
Score = 33.5 bits (77), Expect = 0.26
Identities = 12/70 (17%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIII----------------IIIIIIIIIIIIIIIIIII 141
+II+ +++++I++ +I++++ + I+ +I I+I+II+
Sbjct: 33 LIILSTLLMLVIVLPVIVLLVYFAWKYRASNNAAPPQWHHNTKLEIVWTVIPILIVIILA 92
Query: 142 IIIIIIIIDL 151
+ +I L
Sbjct: 93 VPTVITTHKL 102
Score = 33.5 bits (77), Expect = 0.30
Identities = 11/70 (15%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIII----------------IIIIIIIIIIIIIIIIIII 142
+II+ +++++I++ +I++++ + I+ +I I+I+II+
Sbjct: 33 LIILSTLLMLVIVLPVIVLLVYFAWKYRASNNAAPPQWHHNTKLEIVWTVIPILIVIILA 92
Query: 143 IIIIIIIDLI 152
+ +I +
Sbjct: 93 VPTVITTHKL 102
Score = 33.1 bits (76), Expect = 0.39
Identities = 11/67 (16%), Positives = 33/67 (49%), Gaps = 16/67 (23%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIII----------------IIIIIIIIIIIIIIIIIII 120
+II+ +++++I++ +I++++ + I+ +I I+I+II+
Sbjct: 33 LIILSTLLMLVIVLPVIVLLVYFAWKYRASNNAAPPQWHHNTKLEIVWTVIPILIVIILA 92
Query: 121 IIIIIII 127
+ +I
Sbjct: 93 VPTVITT 99
Score = 31.2 bits (71), Expect = 1.7
Identities = 10/66 (15%), Positives = 31/66 (46%), Gaps = 16/66 (24%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIII----------------IIIIIIIIIIIIIIIIIIII 119
I+ +++++I++ +I++++ + I+ +I I+I+II+ +
Sbjct: 34 IILSTLLMLVIVLPVIVLLVYFAWKYRASNNAAPPQWHHNTKLEIVWTVIPILIVIILAV 93
Query: 120 IIIIII 125
+I
Sbjct: 94 PTVITT 99
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 34.9 bits (81), Expect = 0.13
Identities = 12/128 (9%), Positives = 56/128 (43%), Gaps = 40/128 (31%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIII------ 109
+R+R + +I +++ ++ I I + + I+++I++ + +
Sbjct: 121 RVARLRRRLRRLIWVLVPLLFISIFAENLPDGLARDVLGRLAFILLLILLSLFLWRLLRP 180
Query: 110 ------------------IIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIII 145
++ ++I+ + +I++ ++ ++++ +I+ + ++++
Sbjct: 181 GLPLYEPKEGSSSHLLRRLLWFLLILAPLALIVLALLGYYYTALVLLERLILSLYLLLLW 240
Query: 146 IIIIDLIF 153
+++ +LI
Sbjct: 241 LLVYNLIK 248
>gnl|CDD|234052 TIGR02900, spore_V_B, stage V sporulation protein B. SpoVB is the
stage V sporulation protein B of the bacterial endopore
formation program in Bacillus subtilis and various other
Firmcutes. It is nearly universal among
endospore-formers. Paralogs with rather high sequence
similarity to SpoVB exist, including YkvU in B. subtilis
and a number of proteins in the genus Clostridium.
Member sequences for the seed alignment were chosen to
select those proteins, no more than one to a genome,
closest to B. subtilis SpoVB in a neighbor joining tree
[Cellular processes, Sporulation and germination].
Length = 488
Score = 35.0 bits (81), Expect = 0.14
Identities = 18/73 (24%), Positives = 39/73 (53%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
Y I II +++ I+ + I I I I + +I ++ I++ + + ++ II I+
Sbjct: 412 YAITFIITSVLVTILNLAEIKKNIRITIDLSDFLIFALLGILVYLGLSLLKYIIFNPNIL 471
Query: 136 IIIIIIIIIIIII 148
I +++III+ +
Sbjct: 472 INLLLIIILGFSL 484
Score = 34.6 bits (80), Expect = 0.20
Identities = 17/74 (22%), Positives = 39/74 (52%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
II +++ I+ + I I I I + +I ++ I++ + + ++ II I+I
Sbjct: 414 ITFIITSVLVTILNLAEIKKNIRITIDLSDFLIFALLGILVYLGLSLLKYIIFNPNILIN 473
Query: 136 IIIIIIIIIIIIII 149
+++III+ + I+
Sbjct: 474 LLLIIILGFSLYIL 487
Score = 34.2 bits (79), Expect = 0.26
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I II +++ I+ + I I I I + +I ++ I++ + + ++ II I+I
Sbjct: 414 ITFIITSVLVTILNLAEIKKNIRITIDLSDFLIFALLGILVYLGLSLLKYIIFNPNILIN 473
Query: 137 IIIIIIIIIIIIIDL 151
+++III+ + I L
Sbjct: 474 LLLIIILGFSLYILL 488
Score = 32.7 bits (75), Expect = 0.76
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I II +++ I+ + I I I I + +I ++ I++ + + ++ II I+I
Sbjct: 414 ITFIITSVLVTILNLAEIKKNIRITIDLSDFLIFALLGILVYLGLSLLKYIIFNPNILIN 473
Query: 140 IIIIIIIIIIDLIF 153
+++III+ I
Sbjct: 474 LLLIIILGFSLYIL 487
Score = 31.5 bits (72), Expect = 1.9
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIII 121
RK K I+ + +I +I +I+ I+ ++ I + +++I + I +
Sbjct: 73 RKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVICPAMPFIALS 132
Query: 122 II-------IIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
+ I + I +I I+ I ++ ++I
Sbjct: 133 SVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISA 169
Score = 29.6 bits (67), Expect = 7.6
Identities = 12/58 (20%), Positives = 33/58 (56%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
++K + I + +I ++ I++ + + ++ II I+I +++III+ + I++
Sbjct: 431 IKKNIRITIDLSDFLIFALLGILVYLGLSLLKYIIFNPNILINLLLIIILGFSLYILL 488
Score = 29.2 bits (66), Expect = 8.3
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
K I I I + +I ++ I++ + + ++ II I+I +++III+ + I++
Sbjct: 432 KKNIRITIDLSDFLIFALLGILVYLGLSLLKYIIFNPNILINLLLIIILGFSLYILL 488
>gnl|CDD|217178 pfam02674, Colicin_V, Colicin V production protein. Colicin V
production protein is required in E. Coli for colicin V
production from plasmid pColV-K30. This protein is coded
for in the purF operon.
Length = 145
Score = 33.6 bits (78), Expect = 0.14
Identities = 8/89 (8%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 81 IIIIIIIIIIIII-----IIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIII 129
III++I+++ ++ + ++ ++ ++ + + ++ ++ + II
Sbjct: 3 IIILLILLLSALLGFRRGFVREVLSLLGWVVAFFVASLFYPPLAPLLAEYVLSPALAAII 62
Query: 130 IIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
++I +++++I ++ +++ + + +
Sbjct: 63 AFLLIFLLVLLIGSLLGVLLRKLVKLSGL 91
Score = 30.9 bits (71), Expect = 0.90
Identities = 10/100 (10%), Positives = 46/100 (46%), Gaps = 19/100 (19%)
Query: 77 IIIIIIIIIIIII-----IIIIIIIIIIIIIIIII--------------IIIIIIIIIII 117
III++I+++ ++ + ++ ++ ++ + ++ + II
Sbjct: 3 IIILLILLLSALLGFRRGFVREVLSLLGWVVAFFVASLFYPPLAPLLAEYVLSPALAAII 62
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
++I +++++I ++ +++ ++ + + +D + F
Sbjct: 63 AFLLIFLLVLLIGSLLGVLLRKLVKLSGLGGLDRLLGAVF 102
Score = 30.2 bits (69), Expect = 1.8
Identities = 7/76 (9%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIII 115
++ E+V + II ++I +++++I ++ +++ ++ + + + ++
Sbjct: 48 LLAEYVLSPALAAIIAFLLIFLLVLLIGSLLGVLLRKLVKLSGLGGLDRLLGAVFGLLRG 107
Query: 116 IIIIIIIIIIIIIIII 131
++I+ +++ ++ + +
Sbjct: 108 LLILSVLLFLLALFPL 123
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins similar to
Bacillus subtilis yoeA. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. A number of family members are involved in the
synthesis of peptidoglycan components in bacteria.
Length = 431
Score = 35.1 bits (82), Expect = 0.14
Identities = 15/99 (15%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIII 126
+++K + ++++ +I+ I++ I+ ++ I+ ++ I+ + + + I + I I
Sbjct: 77 EKAKKAVGTLLVLFLILGIVLTILGLLFAPPILRLMNTPAEILELAVSYLRICFLGIPFI 136
Query: 127 IIIIIIIIII------IIIIIIIIIIIIIDLIFDFTFMY 159
I+ + +II ++++I D F+
Sbjct: 137 FGYNAYSAILRGLGDSKTPLYFVIIACVLNIILDLLFIA 175
Score = 34.0 bits (79), Expect = 0.25
Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIIIIIII 117
+R+K + III +II +III+++ +I I + I I I+
Sbjct: 298 ERAKKGLRTGIIISLIIGLIIILLVFFFAPQLLGLFTSDPEVIEIGAEYLRIYSIDYILF 357
Query: 118 IIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
I+ + + +II I+ + ++ I + ++ +
Sbjct: 358 GILFVFNGLFRGLGKTKFPMIISILRLWLVRIPLAYLLSRLTGLGL 403
Score = 33.6 bits (78), Expect = 0.40
Identities = 17/95 (17%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIII 124
+K ++++ +I+ I++ I+ ++ I+ ++ I+ + + + I + I I
Sbjct: 79 AKKAVGTLLVLFLILGIVLTILGLLFAPPILRLMNTPAEILELAVSYLRICFLGIPFIFG 138
Query: 125 IIIIIIII------IIIIIIIIIIIIIIIIIDLIF 153
I+ + +II ++ II+DL+F
Sbjct: 139 YNAYSAILRGLGDSKTPLYFVIIACVLNIILDLLF 173
>gnl|CDD|173004 PRK14538, PRK14538, putative bifunctional signaling protein/50S
ribosomal protein L9; Provisional.
Length = 838
Score = 35.2 bits (81), Expect = 0.14
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
++K+ I+I I+I+++I+I + + I II I + + II +
Sbjct: 2 FSKNKHKTKFIVIAIVIVVLILIFLCFDLQNIQEIIEQINQLTNNSGMRKKIIFFTFNFL 61
Query: 131 IIIIIIIIIIIIII 144
II+ I+II ++
Sbjct: 62 GKIILAILIISFLL 75
Score = 33.6 bits (77), Expect = 0.41
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ ++K+I+I I+I+++I+I + + I II I + + II + I
Sbjct: 5 NKHKTKFIVIAIVIVVLILIFLCFDLQNIQEIIEQINQLTNNSGMRKKIIFFTFNFLGKI 64
Query: 130 IIIIIIIIIII 140
I+ I+II ++
Sbjct: 65 ILAILIISFLL 75
Score = 33.3 bits (76), Expect = 0.57
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
K I+I I+I+++I+I + + I II I + + II
Sbjct: 1 MFSKNKHKTKFIVIAIVIVVLILIFLCFDLQNIQEIIEQINQLTNNSGMRKKIIFFTFNF 60
Query: 129 IIIIIIIIIIIIIII 143
+ II+ I+II ++
Sbjct: 61 LGKIILAILIISFLL 75
Score = 31.7 bits (72), Expect = 1.5
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I+I I+I+++I+I + + I II I + + II + II+ I+
Sbjct: 10 KFIVIAIVIVVLILIFLCFDLQNIQEIIEQINQLTNNSGMRKKIIFFTFNFLGKIILAIL 69
Query: 148 IIDLIFDF 155
II + +
Sbjct: 70 IISFLLNI 77
Score = 31.3 bits (71), Expect = 2.2
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
I+I I+I+++I+I + + I II I + + II + II+ L
Sbjct: 10 KFIVIAIVIVVLILIFLCFDLQNIQEIIEQINQLTNNSGMRKKIIFFTFNFLGKIILAIL 69
Query: 152 IFDFTFMYLKEFRVEQ 167
I F K ++++
Sbjct: 70 IISFLLNIKKNAQIKR 85
Score = 31.3 bits (71), Expect = 2.3
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I+I I+I+++I+I + + I II I + + II + II+ I+
Sbjct: 10 KFIVIAIVIVVLILIFLCFDLQNIQEIIEQINQLTNNSGMRKKIIFFTFNFLGKIILAIL 69
Query: 144 IIIIIIDL 151
II ++++
Sbjct: 70 IISFLLNI 77
Score = 31.3 bits (71), Expect = 2.4
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I+I I+I+++I+I + + I II I + + II + II+ I+
Sbjct: 10 KFIVIAIVIVVLILIFLCFDLQNIQEIIEQINQLTNNSGMRKKIIFFTFNFLGKIILAIL 69
Query: 140 IIIIII 145
II ++
Sbjct: 70 IISFLL 75
Score = 31.3 bits (71), Expect = 2.4
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I+I I+I+++I+I + + I II I + + II + II+ I+
Sbjct: 10 KFIVIAIVIVVLILIFLCFDLQNIQEIIEQINQLTNNSGMRKKIIFFTFNFLGKIILAIL 69
Query: 141 IIIIII 146
II ++
Sbjct: 70 IISFLL 75
Score = 31.3 bits (71), Expect = 2.4
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I+I I+I+++I+I + + I II I + + II + II+ I+
Sbjct: 10 KFIVIAIVIVVLILIFLCFDLQNIQEIIEQINQLTNNSGMRKKIIFFTFNFLGKIILAIL 69
Query: 142 IIIIII 147
II ++
Sbjct: 70 IISFLL 75
Score = 31.3 bits (71), Expect = 2.4
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I+I I+I+++I+I + + I II I + + II + II+ I+
Sbjct: 10 KFIVIAIVIVVLILIFLCFDLQNIQEIIEQINQLTNNSGMRKKIIFFTFNFLGKIILAIL 69
Query: 143 IIIIII 148
II ++
Sbjct: 70 IISFLL 75
Score = 30.6 bits (69), Expect = 4.0
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I+I I+I+++I+I + + I II I + + II + II+ I+
Sbjct: 10 KFIVIAIVIVVLILIFLCFDLQNIQEIIEQINQLTNNSGMRKKIIFFTFNFLGKIILAIL 69
Query: 146 IIIIDLIF 153
II L
Sbjct: 70 IISFLLNI 77
>gnl|CDD|177245 MTH00199, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 460
Score = 35.0 bits (81), Expect = 0.14
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIIIII 133
I ++++I +I+ + + + ++ +++ III IIIII I I+++
Sbjct: 31 IGVLLLIGLIVELNSLNLFQSDKVLDGTNGLLLTNSWIIISKIIIIIGSISILLMGSGET 90
Query: 134 IIIIIIIIIIIIIIIIDL 151
I+ I+I+I+ L
Sbjct: 91 ILSEGGQSSPILILIVAL 108
Score = 34.2 bits (79), Expect = 0.24
Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 58 LQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------II 109
L +V V + + I ++++I +I+ + + + ++ II
Sbjct: 10 LSLVVLSLVLYGVNLSTLKLSIGVLLLIGLIVELNSLNLFQSDKVLDGTNGLLLTNSWII 69
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I IIIII I I+++ I+ I+I+I+ + L+
Sbjct: 70 ISKIIIIIGSISILLMGSGETILSEGGQSSPILILIVALGSLL 112
Score = 31.5 bits (72), Expect = 1.5
Identities = 15/84 (17%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 76 YIII---IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
III +++ ++++ +++ + + + + I ++++I +I+ + + + ++
Sbjct: 1 MIIINPEVLLSLVVLSLVLYGVNLSTLKLSIGVLLLIGLIVELNSLNLFQSDKVLDGTNG 60
Query: 133 IIII---IIIIIIIIIIIIIDLIF 153
+++ III IIIII I ++
Sbjct: 61 LLLTNSWIIISKIIIIIGSISILL 84
Score = 30.8 bits (70), Expect = 3.2
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
III IIIII I I+++ I+ I+I+I+ + ++++ I + I + I+
Sbjct: 68 IIISKIIIIIGSISILLMGSGETILSEGGQSSPILILIVALGSLLLVSSINWLSIYLAIE 127
Query: 151 L 151
L
Sbjct: 128 L 128
>gnl|CDD|148326 pfam06656, Tenui_PVC2, Tenuivirus PVC2 protein. This family
consists of several Tenuivirus PVC2 proteins from Rice
grassy stunt virus, Maize stripe virus and Rice hoja
blanca virus. The function of this family is unknown.
Length = 785
Score = 35.2 bits (81), Expect = 0.14
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIII 100
C + S Y II+++III+ I II I+I +
Sbjct: 218 CSKTYRYSLYSIILLLIIIVCFTGITIINILIFL 251
Score = 33.2 bits (76), Expect = 0.62
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIII 102
+ II+++III+ I II I+I +
Sbjct: 224 YSLYSIILLLIIIVCFTGITIINILIFL 251
Score = 32.9 bits (75), Expect = 0.71
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIII 103
+Y + II+++III+ I II I+I +
Sbjct: 223 RYSLYSIILLLIIIVCFTGITIINILIFL 251
Score = 32.1 bits (73), Expect = 1.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIII 105
Y + II+++III+ I II I+I +
Sbjct: 222 YRYSLYSIILLLIIIVCFTGITIINILIFL 251
Score = 32.1 bits (73), Expect = 1.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 126 IIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
II+++III+ I II I+I + +F
Sbjct: 228 SIILLLIIIVCFTGITIINILIFLKPVF 255
Score = 32.1 bits (73), Expect = 1.4
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
II+++III+ I II I+I + + ++ +++
Sbjct: 228 SIILLLIIIVCFTGITIINILIFLKPVFWLLKKVLY 263
Score = 31.3 bits (71), Expect = 2.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
II+++III+ I II I+I + + ++ ++ I L
Sbjct: 228 SIILLLIIIVCFTGITIINILIFLKPVFWLLKKVLYAIAGL 268
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIII 106
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIII 107
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIII 108
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIII 109
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIII 110
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIII 111
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIII 112
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIII 113
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIII 114
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIII 115
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIII 116
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIII 117
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIII 118
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIII 119
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIII 120
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIII 121
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIII 122
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIII 123
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIII 124
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIII 125
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIII 126
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIII 127
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIII 128
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIII 129
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIII 130
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIII 131
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIII 132
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
Score = 31.3 bits (71), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIII 133
II+++III+ I II I+I +
Sbjct: 228 SIILLLIIIVCFTGITIINILIFL 251
>gnl|CDD|222391 pfam13803, DUF4184, Domain of unknown function (DUF4184). This
domain of unknown function contains several highly
conserved histidines.
Length = 246
Score = 34.1 bits (79), Expect = 0.15
Identities = 8/75 (10%), Positives = 30/75 (40%)
Query: 54 KILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 113
I + + Y I++I++ ++ ++ + + + + +I+
Sbjct: 171 MIWRYLRRHPQKPQVPAKIKLFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVT 230
Query: 114 IIIIIIIIIIIIIII 128
I +I ++++ I+
Sbjct: 231 FISAFLIGLLLVSIL 245
Score = 31.4 bits (72), Expect = 1.1
Identities = 7/58 (12%), Positives = 28/58 (48%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ K I++I++ ++ ++ + + + + +I+ I +I ++++ I+
Sbjct: 188 KIKLFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVTFISAFLIGLLLVSIL 245
Score = 31.1 bits (71), Expect = 1.6
Identities = 8/69 (11%), Positives = 31/69 (44%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+R + I + I++I++ ++ ++ + + + + +I+ I +
Sbjct: 177 RRHPQKPQVPAKIKLFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVTFISAFL 236
Query: 132 IIIIIIIII 140
I ++++ I+
Sbjct: 237 IGLLLVSIL 245
Score = 30.7 bits (70), Expect = 2.0
Identities = 6/65 (9%), Positives = 28/65 (43%)
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+ + I++I++ ++ ++ + + + + +I+ I +I ++
Sbjct: 181 QKPQVPAKIKLFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVTFISAFLIGLL 240
Query: 127 IIIII 131
++ I+
Sbjct: 241 LVSIL 245
Score = 30.3 bits (69), Expect = 3.3
Identities = 8/69 (11%), Positives = 32/69 (46%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
R+ + + I + I++I++ ++ ++ + + + + +I+ I +
Sbjct: 177 RRHPQKPQVPAKIKLFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVTFISAFL 236
Query: 131 IIIIIIIII 139
I ++++ I+
Sbjct: 237 IGLLLVSIL 245
Score = 29.5 bits (67), Expect = 5.1
Identities = 8/74 (10%), Positives = 32/74 (43%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
R ++ + I + I++I++ ++ ++ + + + + +I+
Sbjct: 172 IWRYLRRHPQKPQVPAKIKLFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVTF 231
Query: 129 IIIIIIIIIIIIII 142
I +I ++++ I+
Sbjct: 232 ISAFLIGLLLVSIL 245
Score = 28.7 bits (65), Expect = 8.3
Identities = 6/55 (10%), Positives = 27/55 (49%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ I++I++ ++ ++ + + + + +I+ I +I ++++ I+
Sbjct: 191 LFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVTFISAFLIGLLLVSIL 245
Score = 28.7 bits (65), Expect = 8.3
Identities = 6/55 (10%), Positives = 27/55 (49%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ I++I++ ++ ++ + + + + +I+ I +I ++++ I+
Sbjct: 191 LFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVTFISAFLIGLLLVSIL 245
Score = 28.7 bits (65), Expect = 8.3
Identities = 6/55 (10%), Positives = 27/55 (49%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+ I++I++ ++ ++ + + + + +I+ I +I ++++ I+
Sbjct: 191 LFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVTFISAFLIGLLLVSIL 245
Score = 28.7 bits (65), Expect = 8.3
Identities = 6/55 (10%), Positives = 27/55 (49%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ I++I++ ++ ++ + + + + +I+ I +I ++++ I+
Sbjct: 191 LFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVTFISAFLIGLLLVSIL 245
Score = 28.7 bits (65), Expect = 8.3
Identities = 6/55 (10%), Positives = 27/55 (49%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ I++I++ ++ ++ + + + + +I+ I +I ++++ I+
Sbjct: 191 LFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVTFISAFLIGLLLVSIL 245
Score = 28.7 bits (65), Expect = 8.3
Identities = 6/55 (10%), Positives = 27/55 (49%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ I++I++ ++ ++ + + + + +I+ I +I ++++ I+
Sbjct: 191 LFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVTFISAFLIGLLLVSIL 245
Score = 28.7 bits (65), Expect = 8.3
Identities = 6/55 (10%), Positives = 27/55 (49%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ I++I++ ++ ++ + + + + +I+ I +I ++++ I+
Sbjct: 191 LFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVTFISAFLIGLLLVSIL 245
Score = 28.7 bits (65), Expect = 8.6
Identities = 6/56 (10%), Positives = 28/56 (50%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ I++I++ ++ ++ + + + + +I+ I +I ++++ ++F
Sbjct: 191 LFYWIVVILLGLLGFLLYALYFPLEVWSELYFFFGRLIVTFISAFLIGLLLVSILF 246
>gnl|CDD|226614 COG4129, COG4129, Predicted membrane protein [Function unknown].
Length = 332
Score = 34.6 bits (80), Expect = 0.16
Identities = 9/80 (11%), Positives = 42/80 (52%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I+ ++ ++ I ++++III +++++ + ++ I + ++ I++ +I + +I
Sbjct: 68 AILAVLFFLLFGQNPIAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFLIF 127
Query: 138 IIIIIIIIIIIIDLIFDFTF 157
+++ + + + + +
Sbjct: 128 NRFLLVFVGVGVAFLVNLVM 147
Score = 34.2 bits (79), Expect = 0.19
Identities = 10/75 (13%), Positives = 38/75 (50%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ + ++ + I+ ++ ++ I ++++III +++++ + ++ I + ++
Sbjct: 54 LKRALQRLLGNALGAILAVLFFLLFGQNPIAFGVVLLIIIPLLVLLKLENGVVPITVGVL 113
Query: 142 IIIIIIIIDLIFDFT 156
I++ +I L F
Sbjct: 114 HILVAAMIPLFLIFN 128
Score = 33.5 bits (77), Expect = 0.32
Identities = 9/69 (13%), Positives = 40/69 (57%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I ++++III +++++ + ++ I + ++ I++ +I + +I +++ + + + +
Sbjct: 83 IAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFLIFNRFLLVFVGVGVAFL 142
Query: 142 IIIIIIIID 150
+ +++ D
Sbjct: 143 VNLVMPPPD 151
Score = 33.1 bits (76), Expect = 0.50
Identities = 10/79 (12%), Positives = 41/79 (51%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ I+ ++ ++ I ++++III +++++ + ++ I + ++ I++ +I +
Sbjct: 65 ALGAILAVLFFLLFGQNPIAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLF 124
Query: 139 IIIIIIIIIIIDLIFDFTF 157
+I +++ + + F
Sbjct: 125 LIFNRFLLVFVGVGVAFLV 143
Score = 32.7 bits (75), Expect = 0.62
Identities = 9/75 (12%), Positives = 41/75 (54%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I ++++III +++++ + ++ I + ++ I++ +I + +I +++ + + + +
Sbjct: 83 IAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFLIFNRFLLVFVGVGVAFL 142
Query: 138 IIIIIIIIIIIIDLI 152
+ +++ + L
Sbjct: 143 VNLVMPPPDYELKLY 157
Score = 32.7 bits (75), Expect = 0.67
Identities = 8/69 (11%), Positives = 39/69 (56%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I ++++III +++++ + ++ I + ++ I++ +I + +I +++ + + +
Sbjct: 82 PIAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFLIFNRFLLVFVGVGVAF 141
Query: 136 IIIIIIIII 144
++ +++
Sbjct: 142 LVNLVMPPP 150
Score = 32.3 bits (74), Expect = 0.82
Identities = 12/86 (13%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
KRS + ++ + I+ ++ ++ I ++++III +++++ + ++ I
Sbjct: 50 IKRS-LKRALQRLLGNALGAILAVLFFLLFGQNPIAFGVVLLIIIPLLVLLKLENGVVPI 108
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDFT 156
+ ++ I++ +I + +I +
Sbjct: 109 TVGVLHILVAAMIPLFLIFNRFLLVF 134
Score = 31.2 bits (71), Expect = 2.0
Identities = 9/81 (11%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 77 IIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
I+ ++ ++ I ++++III +++++ + ++ I + ++ I++ +I + +I
Sbjct: 68 AILAVLFFLLFGQNPIAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFLIF 127
Query: 133 IIIIIIIIIIIIIIIIIDLIF 153
+++ + + + ++ ++
Sbjct: 128 NRFLLVFVGVGVAFLVNLVMP 148
Score = 30.0 bits (68), Expect = 4.5
Identities = 8/79 (10%), Positives = 41/79 (51%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++III +++++ + ++ I + ++ I++ +I + +I +++ + + + ++ +++
Sbjct: 88 VLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFLIFNRFLLVFVGVGVAFLVNLVM 147
Query: 136 IIIIIIIIIIIIIIDLIFD 154
+ + ++ I
Sbjct: 148 PPPDYELKLYRAKVEAILA 166
Score = 30.0 bits (68), Expect = 4.9
Identities = 8/79 (10%), Positives = 39/79 (49%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ + + ++ + I+ ++ ++ I ++++III +++++ + ++ I
Sbjct: 49 TIKRSLKRALQRLLGNALGAILAVLFFLLFGQNPIAFGVVLLIIIPLLVLLKLENGVVPI 108
Query: 134 IIIIIIIIIIIIIIIIDLI 152
+ ++ I++ +I + +
Sbjct: 109 TVGVLHILVAAMIPLFLIF 127
>gnl|CDD|233780 TIGR02210, rodA_shape, rod shape-determining protein RodA. This
protein is a member of the FtsW/RodA/SpoVE family
(pfam01098). It is found only in species with rod (or
spiral) shapes. In many species, mutation of rodA has
been shown to correlate with loss of the normal rod
shape. Note that RodA homologs are found, scoring below
the cutoffs for this model, in a number of both
rod-shaped and coccoid bacteria, including four proteins
in Bacillus anthracis, for example [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Cellular processes, Cell division].
Length = 352
Score = 34.8 bits (81), Expect = 0.16
Identities = 8/65 (12%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 101 IIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
++ +I+I++ ++I+ ++I+ I + ++ + + +I+ ++ + I +I
Sbjct: 127 LLKALILILVPALLILKQPDLGTALVILAIGLFVLFLAGLSWKLILALLAAGVAAIPVII 186
Query: 154 DFTFM 158
+ +
Sbjct: 187 WWFLL 191
Score = 33.6 bits (78), Expect = 0.32
Identities = 11/65 (16%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 73 RSKYIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
R K ++ +I+I++ ++I+ ++I+ I + ++ + + +I+ ++ + I
Sbjct: 123 RLKDLLKALILILVPALLILKQPDLGTALVILAIGLFVLFLAGLSWKLILALLAAGVAAI 182
Query: 126 IIIII 130
+II
Sbjct: 183 PVIIW 187
Score = 32.5 bits (75), Expect = 0.65
Identities = 9/61 (14%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 79 IIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
++ +I+I++ ++I+ ++I+ I + ++ + + +I+ ++ + I +II
Sbjct: 127 LLKALILILVPALLILKQPDLGTALVILAIGLFVLFLAGLSWKLILALLAAGVAAIPVII 186
Query: 132 I 132
Sbjct: 187 W 187
Score = 32.5 bits (75), Expect = 0.65
Identities = 9/61 (14%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 80 IIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
++ +I+I++ ++I+ ++I+ I + ++ + + +I+ ++ + I +II
Sbjct: 127 LLKALILILVPALLILKQPDLGTALVILAIGLFVLFLAGLSWKLILALLAAGVAAIPVII 186
Query: 133 I 133
Sbjct: 187 W 187
Score = 32.5 bits (75), Expect = 0.65
Identities = 9/61 (14%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 81 IIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++ +I+I++ ++I+ ++I+ I + ++ + + +I+ ++ + I +II
Sbjct: 127 LLKALILILVPALLILKQPDLGTALVILAIGLFVLFLAGLSWKLILALLAAGVAAIPVII 186
Query: 134 I 134
Sbjct: 187 W 187
Score = 32.5 bits (75), Expect = 0.65
Identities = 9/61 (14%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 82 IIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
++ +I+I++ ++I+ ++I+ I + ++ + + +I+ ++ + I +II
Sbjct: 127 LLKALILILVPALLILKQPDLGTALVILAIGLFVLFLAGLSWKLILALLAAGVAAIPVII 186
Query: 135 I 135
Sbjct: 187 W 187
Score = 32.5 bits (75), Expect = 0.65
Identities = 9/61 (14%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 83 IIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++ +I+I++ ++I+ ++I+ I + ++ + + +I+ ++ + I +II
Sbjct: 127 LLKALILILVPALLILKQPDLGTALVILAIGLFVLFLAGLSWKLILALLAAGVAAIPVII 186
Query: 136 I 136
Sbjct: 187 W 187
Score = 30.2 bits (69), Expect = 3.9
Identities = 7/68 (10%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 103 IIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
++ +I+I++ ++I+ ++I+ I + ++ + + +I+ ++ + +
Sbjct: 127 LLKALILILVPALLILKQPDLGTALVILAIGLFVLFLAGLSWKLILALLAAGVAAIPVII 186
Query: 156 TFMYLKEF 163
+ L ++
Sbjct: 187 WWFLLHDY 194
>gnl|CDD|236502 PRK09410, ulaA, PTS system ascorbate-specific transporter subunit
IIC; Reviewed.
Length = 452
Score = 34.8 bits (81), Expect = 0.16
Identities = 10/74 (13%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIII 136
II + ++I + +++ ++ + + I++ + + II III+I
Sbjct: 370 IIGAFVNGLLITFLPALLLPVLGSLGMANTTFGDWDFGAPGILLGFLAKLFGIIGIIIVI 429
Query: 137 IIIIIIIIIIIIID 150
+ ++++ +
Sbjct: 430 ALALLVLAGRALRK 443
Score = 34.5 bits (80), Expect = 0.21
Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIII 134
II + ++I + +++ ++ + + I++ + + II III+I
Sbjct: 370 IIGAFVNGLLITFLPALLLPVLGSLGMANTTFGDWDFGAPGILLGFLAKLFGIIGIIIVI 429
Query: 135 IIIIIIIIIIIIIIIDLI 152
+ ++++ + +
Sbjct: 430 ALALLVLAGRALRKKEDA 447
Score = 34.1 bits (79), Expect = 0.25
Identities = 10/73 (13%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIII 141
II + ++I + +++ ++ + + I++ + + II III+I
Sbjct: 370 IIGAFVNGLLITFLPALLLPVLGSLGMANTTFGDWDFGAPGILLGFLAKLFGIIGIIIVI 429
Query: 142 IIIIIIIIDLIFD 154
+ ++++
Sbjct: 430 ALALLVLAGRALR 442
Score = 31.4 bits (72), Expect = 1.9
Identities = 10/74 (13%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIII 145
II + ++I + +++ ++ + + I++ + + II III+I
Sbjct: 370 IIGAFVNGLLITFLPALLLPVLGSLGMANTTFGDWDFGAPGILLGFLAKLFGIIGIIIVI 429
Query: 146 IIIIDLIFDFTFMY 159
+ + ++
Sbjct: 430 ALALLVLAGRALRK 443
Score = 31.4 bits (72), Expect = 2.0
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 112
+ I++ + + II III+I + ++++ +
Sbjct: 406 FGAPGILLGFLAKLFGIIGIIIVIALALLVLAGRALR 442
Score = 30.2 bits (69), Expect = 4.1
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 113
I++ + + II III+I + ++++ +
Sbjct: 407 GAPGILLGFLAKLFGIIGIIIVIALALLVLAGRALR 442
Score = 30.2 bits (69), Expect = 4.1
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
I++ + + II III+I + ++++ +
Sbjct: 407 GAPGILLGFLAKLFGIIGIIIVIALALLVLAGRALR 442
Score = 29.5 bits (67), Expect = 7.2
Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIII 147
II + ++I + +++ ++ + + I++ + + II III+I
Sbjct: 370 IIGAFVNGLLITFLPALLLPVLGSLGMANTTFGDWDFGAPGILLGFLAKLFGIIGIIIVI 429
Query: 148 IIDLIFDFTFMYLKEFRVEQ 167
+ L+ K+ E+
Sbjct: 430 ALALLVLAGRALRKKEDAEK 449
>gnl|CDD|223248 COG0170, SEC59, Dolichol kinase [Lipid metabolism].
Length = 216
Score = 33.9 bits (78), Expect = 0.16
Identities = 14/93 (15%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------- 118
++ + II+ ++I++II+++ + ++I + + +++ ++ +I
Sbjct: 35 YILRDKFAIILFLLILLIILLLEFELFRLLIPGLEGKVTLLLSELLSLIEREREKNGPGL 94
Query: 119 -IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
II I ++ ++ I + I I+++ + D
Sbjct: 95 GGIIYFIGGGLLASLLFPIEVAIAGILVLALGD 127
Score = 33.9 bits (78), Expect = 0.20
Identities = 17/108 (15%), Positives = 44/108 (40%), Gaps = 22/108 (20%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII- 126
E RK ++ ++ I+ II+ ++I++II+++ + ++I + + +++
Sbjct: 18 EVRRKLLHISGGLLFLLYILRDKFAIILFLLILLIILLLEFELFRLLIPGLEGKVTLLLS 77
Query: 127 -------------------IIIIIIIIIIIIII--IIIIIIIIIDLIF 153
II I ++ ++ I + I I+ L
Sbjct: 78 ELLSLIEREREKNGPGLGGIIYFIGGGLLASLLFPIEVAIAGILVLAL 125
Score = 33.1 bits (76), Expect = 0.37
Identities = 11/86 (12%), Positives = 40/86 (46%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I+ + + + ++ I ++ ++ I+ II+ ++I++II+++ +
Sbjct: 1 NANPATKGVILSLDTRLEVRRKLLHISGGLLFLLYILRDKFAIILFLLILLIILLLEFEL 60
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYLKE 162
++I + + L+ + + +E
Sbjct: 61 FRLLIPGLEGKVTLLLSELLSLIERE 86
Score = 30.8 bits (70), Expect = 2.1
Identities = 11/79 (13%), Positives = 36/79 (45%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+I+ + + + ++ I ++ ++ I+ II+ ++I++II+++ +
Sbjct: 1 NANPATKGVILSLDTRLEVRRKLLHISGGLLFLLYILRDKFAIILFLLILLIILLLEFEL 60
Query: 145 IIIIIDLIFDFTFMYLKEF 163
++I + + L E
Sbjct: 61 FRLLIPGLEGKVTLLLSEL 79
Score = 30.0 bits (68), Expect = 3.6
Identities = 13/98 (13%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++ + ++ I ++ ++ I+ II+ ++I++II+++ + ++I + + +
Sbjct: 15 TRLEVRRKLLHISGGLLFLLYILRDKFAIILFLLILLIILLLEFELFRLLIPGLEGKVTL 74
Query: 134 II-----------------IIIIIIIIIIIIIIDLIFD 154
++ + II I ++ L+F
Sbjct: 75 LLSELLSLIEREREKNGPGLGGIIYFIGGGLLASLLFP 112
Score = 30.0 bits (68), Expect = 3.6
Identities = 9/80 (11%), Positives = 38/80 (47%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+I+ + + + ++ I ++ ++ I+ II+ ++I++II+++ +
Sbjct: 2 ANPATKGVILSLDTRLEVRRKLLHISGGLLFLLYILRDKFAIILFLLILLIILLLEFELF 61
Query: 135 IIIIIIIIIIIIIIIDLIFD 154
++I + + +++ +
Sbjct: 62 RLLIPGLEGKVTLLLSELLS 81
Score = 29.7 bits (67), Expect = 4.8
Identities = 10/83 (12%), Positives = 35/83 (42%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+I+ + + + ++ I ++ ++ I+ II+ ++I++II+++ +
Sbjct: 1 NANPATKGVILSLDTRLEVRRKLLHISGGLLFLLYILRDKFAIILFLLILLIILLLEFEL 60
Query: 141 IIIIIIIIIDLIFDFTFMYLKEF 163
++I + + L
Sbjct: 61 FRLLIPGLEGKVTLLLSELLSLI 83
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins similar to
Streptococcus aureus MepA. The integral membrane
proteins from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. This subfamily includes Streptococcus aureus
MepA and Vibrio vulnificus VmrA and functions most
likely as a multidrug efflux pump.
Length = 426
Score = 34.8 bits (81), Expect = 0.16
Identities = 15/109 (13%), Positives = 50/109 (45%), Gaps = 20/109 (18%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIII--IIIII------IIIIIIIIIIIIIIIIIII 123
R K + + +I+ +I +++ +I+++ I+ + +I + I+ I ++ +
Sbjct: 300 DRVKQALKLALIVALIYGLVLFLILLLFPEQIVSLFTDDPELIALAARILRIFLLAFPLA 359
Query: 124 IIIIIII------------IIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I I++ ++ ++ + +I +++I+ +F ++L
Sbjct: 360 GINIVLSGYFQAIGKAKRAALLSLLRQGLFLIPLLLILPRLFGLDGIWL 408
Score = 29.4 bits (67), Expect = 7.4
Identities = 13/102 (12%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII 117
R+++ I +++ +I+ +++ I+ ++ + ++ ++ + II++
Sbjct: 77 REKANRIFSTALLLSLILGLLLTILGLLFLDPLLRLLGASGELLPYAVDYLRIILLGAPF 136
Query: 118 IIIIIIIIIIIII--IIIIIIIIIIIIIIIIIIIDLIFDFTF 157
I+ ++ ++ + ++ ++I ++ II+D +F F
Sbjct: 137 TILSSVLNNLLRAEGKPKLAMLGMLIGAVLNIILDPLFIFVL 178
>gnl|CDD|222559 pfam14126, DUF4293, Domain of unknown function (DUF4293). This
family of integral membrane proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
136 and 154 amino acids in length.
Length = 111
Score = 32.5 bits (75), Expect = 0.17
Identities = 5/59 (8%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIII 121
R ++ Y+++ ++ +++++++ ++ ++ I I + + I++ + ++ +
Sbjct: 3 RIQTLYLLLAALLAGVLLLLVLSALLALVAIFLFKNRKLQIRLCRLNILLNLGLLGLFA 61
Score = 29.8 bits (68), Expect = 1.5
Identities = 4/67 (5%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+ ++ +++++++ ++ ++ I I + + I++ + ++ + + + +
Sbjct: 11 LAALLAGVLLLLVLSALLALVAIFLFKNRKLQIRLCRLNILLNLGLLGLFAYFFLNLSGE 70
Query: 151 LIFDFTF 157
F
Sbjct: 71 TGATFEK 77
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 34.5 bits (79), Expect = 0.17
Identities = 1/76 (1%), Positives = 37/76 (48%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S+ ++++ + + + ++ + ++ ++ ++ ++ + ++ ++++ +
Sbjct: 211 SRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA 270
Query: 134 IIIIIIIIIIIIIIII 149
++ ++++ +++
Sbjct: 271 QLLGAALVVLGVLLAS 286
Score = 34.5 bits (79), Expect = 0.17
Identities = 0/74 (0%), Positives = 37/74 (50%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+++++ + + + ++ + ++ ++ ++ ++ + ++ ++++ + ++
Sbjct: 214 WLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLL 273
Query: 136 IIIIIIIIIIIIII 149
++++ +++ +
Sbjct: 274 GAALVVLGVLLASL 287
Score = 32.1 bits (73), Expect = 0.79
Identities = 4/74 (5%), Positives = 38/74 (51%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+I ++++ ++++ + + ++++++ ++ + + +++ + + + +II
Sbjct: 45 LIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIG 104
Query: 140 IIIIIIIIIIDLIF 153
++ + ++ L+
Sbjct: 105 LLPLFTALLAVLLL 118
Score = 29.1 bits (65), Expect = 8.5
Identities = 6/79 (7%), Positives = 38/79 (48%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ + + +I ++++ ++++ + + ++++++ ++ + + +++ + +
Sbjct: 33 LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALK 92
Query: 139 IIIIIIIIIIIDLIFDFTF 157
+ +II L+ FT
Sbjct: 93 YTSASVASLIIGLLPLFTA 111
>gnl|CDD|221205 pfam11750, DUF3307, Protein of unknown function (DUF3307). This
family of bacterial proteins has no known function.
Length = 122
Score = 33.0 bits (76), Expect = 0.17
Identities = 16/94 (17%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIII 124
RK+SKY+ + I+I+ ++++++++++ + +II I +I +I + + ++
Sbjct: 27 RKKSKYLYLHILIVFLLLLLLLLLLGFWLAALIIAISHFLIDLIKSYLNKKLKSLAAFLL 86
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
++ I I+I + + + + + ++ L+ ++
Sbjct: 87 DQLLHIAILIGLALALTDLALNPLLGLLLFKEYL 120
>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate
synthase; Reviewed.
Length = 279
Score = 34.2 bits (79), Expect = 0.17
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
K+S YI I++I+ I++ + + I I +I++II I+ II ++I++
Sbjct: 196 IKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
Score = 33.8 bits (78), Expect = 0.28
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
K I I++I+ I++ + + I I +I++II I+ II ++I++
Sbjct: 194 YGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I I++I+ I++ + + I I +I++II I+ II ++I++
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I I++I+ I++ + + I I +I++II I+ II ++I++
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I I++I+ I++ + + I I +I++II I+ II ++I++
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I I++I+ I++ + + I I +I++II I+ II ++I++
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I I++I+ I++ + + I I +I++II I+ II ++I++
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I I++I+ I++ + + I I +I++II I+ II ++I++
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I I++I+ I++ + + I I +I++II I+ II ++I++
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I I++I+ I++ + + I I +I++II I+ II ++I++
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I I++I+ I++ + + I I +I++II I+ II ++I++
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
I I++I+ I++ + + I I +I++II I+ II ++I++
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
I I++I+ I++ + + I I +I++II I+ II ++I++
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
Score = 31.1 bits (71), Expect = 1.8
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I I++I+ I++ + + I I +I++II D++F
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILF 238
Score = 30.3 bits (69), Expect = 3.5
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I I++I+ I++ + + I I +I++II I+ II ++ L+
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILL 246
>gnl|CDD|217407 pfam03176, MMPL, MMPL family. Members of this family are putative
integral membrane proteins from bacteria. Several of the
members are mycobacterial proteins. Many of the proteins
contain two copies of this aligned region. The function
of these proteins is not known, although it has been
suggested that they may be involved in lipid transport.
Length = 332
Score = 34.6 bits (80), Expect = 0.17
Identities = 10/77 (12%), Positives = 41/77 (53%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ +I + +++I II++I+ ++ ++ ++ + + + ++ I+ I+ I +
Sbjct: 140 GDRDLGLIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLGAAQGLVAILAHILGIGLS 199
Query: 134 IIIIIIIIIIIIIIIID 150
+ ++++++I + D
Sbjct: 200 TFALNLLVVLLIAVGTD 216
Score = 32.3 bits (74), Expect = 0.76
Identities = 7/52 (13%), Positives = 27/52 (51%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+I + +++I II++I+ ++ ++ ++ + + + ++ I+ I
Sbjct: 146 LIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLGAAQGLVAILAHILGIG 197
Score = 30.7 bits (70), Expect = 2.7
Identities = 8/51 (15%), Positives = 28/51 (54%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+I + +++I II++I+ ++ ++ ++ + + + ++ I+ I I
Sbjct: 146 LIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLGAAQGLVAILAHILGI 196
Score = 30.3 bits (69), Expect = 3.7
Identities = 9/53 (16%), Positives = 30/53 (56%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
+I + +++I II++I+ ++ ++ ++ + + + ++ I+ I+ I L
Sbjct: 146 LIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLGAAQGLVAILAHILGIGL 198
Score = 30.0 bits (68), Expect = 4.9
Identities = 9/65 (13%), Positives = 33/65 (50%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
+I + +++I II++I+ ++ ++ ++ + + + ++ I+ I+ I + +
Sbjct: 146 LIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLGAAQGLVAILAHILGIGLSTFALNL 205
Query: 156 TFMYL 160
+ L
Sbjct: 206 LVVLL 210
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 34.9 bits (81), Expect = 0.18
Identities = 9/51 (17%), Positives = 32/51 (62%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I DF+
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFIQKPLDFS 54
Score = 31.5 bits (72), Expect = 2.1
Identities = 7/47 (14%), Positives = 30/47 (63%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
+ +++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 1 GRDLLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 31.1 bits (71), Expect = 2.5
Identities = 7/44 (15%), Positives = 29/44 (65%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+++ I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 4 LLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
Score = 29.9 bits (68), Expect = 6.3
Identities = 8/46 (17%), Positives = 28/46 (60%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
R + I ++ I+ ++I+ + ++ I++ + I + ++I+++ + I
Sbjct: 2 RDLLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFI 47
>gnl|CDD|224610 COG1696, DltB, Predicted membrane protein involved in D-alanine
export [Cell envelope biogenesis, outer membrane].
Length = 425
Score = 34.6 bits (80), Expect = 0.19
Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 29/139 (20%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIII 121
F ++ Y++++ ++ I ++ +I++ + I + +++ I+ +
Sbjct: 23 FGKRLQNYLLLVSNFFLLAIFSLVFLILVALYIYFNYQLALLLFYDRYRKRRILAGCGVF 82
Query: 122 IIIIIIIIIIIIIIIIIIIIII-----IIIIIIDL-IFDFTF---MYLKEFRVEQCPLFL 172
+I I+ I I ++ I I II I+ L I +TF YL E R
Sbjct: 83 YLIAILGIFKYFIFKVLPIAIFWGPLDIIGKILPLGISFYTFKSIAYLVEVR-------- 134
Query: 173 QHKCTQHRPFTCFHWHFMN 191
W+F+
Sbjct: 135 -----DGLIAEHIDWNFLR 148
>gnl|CDD|221096 pfam11368, DUF3169, Protein of unknown function (DUF3169). Some
members in this family of proteins are annotated as
membrane proteins however this cannot be confirmed.
Currently there is no known function.
Length = 248
Score = 33.8 bits (78), Expect = 0.20
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
I+ +I +++ II II I + + I + +III+ IIIII+ L+F
Sbjct: 8 ILRYLIFLLLGGIIGGIIGGFGGAIAGFLENLSFSTIDNVQLIIILARIIIIILTVLLFI 67
Query: 155 FTFMYLKEFRVEQ 167
F + LK +
Sbjct: 68 FLYQALKYKALYD 80
Score = 33.4 bits (77), Expect = 0.26
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
I+ + ++ I +++ ++ + I+ I I I+++ ++II+ I I I I
Sbjct: 104 ILFNVSSVLSFIALLLGYVLGLFSDGAILFISIPDILLLFVLIILQIFIRKFIQKIRDYK 163
Query: 151 LIFDFTFMYLKEFRVEQC 168
L T K+F
Sbjct: 164 LPKFPTKKETKKF-ANSL 180
Score = 31.9 bits (73), Expect = 0.82
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+KR +I +++ II II I + + I + +III+ IIIII+ ++
Sbjct: 5 KKRILRYLIFLLLGGIIGGIIGGFGGAIAGFLENLSFSTIDNVQLIIILARIIIIILTVL 64
Query: 131 IIIII 135
+ I +
Sbjct: 65 LFIFL 69
Score = 31.9 bits (73), Expect = 0.84
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K+ + + +I +++ II II I + + I + +III+ IIIII+ +
Sbjct: 4 KKKRILRYLIFLLLGGIIGGIIGGFGGAIAGFLENLSFSTIDNVQLIIILARIIIIILTV 63
Query: 132 IIIIII 137
++ I +
Sbjct: 64 LLFIFL 69
Score = 30.7 bits (70), Expect = 1.9
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K+ K I+ +I +++ II II I + + I + +III+ IIIII+
Sbjct: 2 KKKKKRILRYLIFLLLGGIIGGIIGGFGGAIAGFLENLSFSTIDNVQLIIILARIIIIIL 61
Query: 132 IIIIIIII 139
+++ I +
Sbjct: 62 TVLLFIFL 69
Score = 30.4 bits (69), Expect = 2.9
Identities = 19/68 (27%), Positives = 36/68 (52%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+K+ K I+ +I +++ II II I + + I + +III+ IIIII+
Sbjct: 2 KKKKKRILRYLIFLLLGGIIGGIIGGFGGAIAGFLENLSFSTIDNVQLIIILARIIIIIL 61
Query: 131 IIIIIIII 138
+++ I +
Sbjct: 62 TVLLFIFL 69
Score = 29.6 bits (67), Expect = 5.2
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I+ +I +++ II II I + + I + +III+ IIIII+ +++ I
Sbjct: 8 ILRYLIFLLLGGIIGGIIGGFGGAIAGFLENLSFSTIDNVQLIIILARIIIIILTVLLFI 67
Query: 148 IIDLIFDFTFMYLKE 162
+ + +Y KE
Sbjct: 68 FLYQALKYKALYDKE 82
Score = 29.2 bits (66), Expect = 6.4
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 119
S Y I ++ +I+ ++ + + II I+ I+ I+++III I I
Sbjct: 191 SSYKIYFVLNQVILPLLYVFLFIISILTGENQILAILLVIIIHIYI 236
Score = 28.8 bits (65), Expect = 9.0
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+ I ++ +I+ ++ + + II I+ I+ I+++III I I
Sbjct: 185 RQANYESSYKIYFVLNQVILPLLYVFLFIISILTGENQILAILLVIIIHIYI 236
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 429
Score = 34.2 bits (79), Expect = 0.21
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 18/105 (17%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ I I + + ++I I I+ + I+ + +I I +I IIII+
Sbjct: 299 DLKEALRIGNICLGLGLLIYIAAAIVFLAFPYKILSLFTNDPELINYSIPYLIFIIIILF 358
Query: 131 IIIIIII------------------IIIIIIIIIIIIDLIFDFTF 157
I I+ II II++ + + LIF F
Sbjct: 359 FKSINIVYGFAIRAIGDTKWMLYTQIIGTIIVVSVALLLIFVFKL 403
>gnl|CDD|216411 pfam01284, MARVEL, Membrane-associating domain. MARVEL
domain-containing proteins are often found in
lipid-associating proteins - such as Occludin and MAL
family proteins. It may be part of the machinery of
membrane apposition events, such as transport vesicle
biogenesis.
Length = 132
Score = 32.6 bits (75), Expect = 0.22
Identities = 11/82 (13%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIIIIIIIIIIIII 138
+ + I+ I+ ++ II++ +I + + + + +I + +++ +
Sbjct: 2 LRTPLGILRILQLVFAIIVLGLIASLIAGSNPSAVNFAVFVAVFSFLIALYFLLLYLFGY 61
Query: 139 IIIIIIIIIIIDLIFDFTFMYL 160
I ++DLI D
Sbjct: 62 SYFPSIAWPLVDLILDALAALF 83
>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed.
Length = 285
Score = 34.1 bits (79), Expect = 0.22
Identities = 13/109 (11%), Positives = 47/109 (43%), Gaps = 24/109 (22%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------III 118
+ Y + +++ ++ + + ++ +I +I II +I+ I+ I +
Sbjct: 74 FSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPL 133
Query: 119 I--IIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIDLIFD 154
+++ ++ + +I+ ++++ + I + I +++FD
Sbjct: 134 FKNLVVSLLWALSPLILGVYYYQLTIFSLLLLYAVFIFLKSFIREIVFD 182
Score = 33.4 bits (77), Expect = 0.38
Identities = 7/83 (8%), Positives = 50/83 (60%), Gaps = 9/83 (10%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------II 121
++R+ ++I+ ++ +I++I+ + ++ ++++++++++ ++ II + +
Sbjct: 203 KERTLKFLLILNLLFLILLILGVYTGLLPLLLLVLLLLLAYVLYYIIKLFAADDKKDLLY 262
Query: 122 IIIIIIIIIIIIIIIIIIIIIII 144
+ ++ +++ +I +++ ++++
Sbjct: 263 LSLLDKEHMLLGLISMLLGLLVL 285
Score = 29.1 bits (66), Expect = 8.2
Identities = 7/83 (8%), Positives = 49/83 (59%), Gaps = 9/83 (10%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------II 120
+ K+++I+ ++ +I++I+ + ++ ++++++++++ ++ II + +
Sbjct: 203 KERTLKFLLILNLLFLILLILGVYTGLLPLLLLVLLLLLAYVLYYIIKLFAADDKKDLLY 262
Query: 121 IIIIIIIIIIIIIIIIIIIIIII 143
+ ++ +++ +I +++ ++++
Sbjct: 263 LSLLDKEHMLLGLISMLLGLLVL 285
>gnl|CDD|110325 pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family. This family
includes the following members: FlhB, HrpN, YscU, SpaS,
HrcU SsaU and YopU. All of these proteins export
peptides using the type III secretion system. The
peptides exported are quite diverse.
Length = 343
Score = 34.2 bits (79), Expect = 0.22
Identities = 10/73 (13%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
I+ ++ + +I + + I+ + II+I++ ++ +++++++ ++I+ ++D
Sbjct: 145 ILKVVAVGLIFYFFLKNDLGTIVRLPGCSPMGIIVIVMTLLKKLLLVVLLFLLIVGLLDY 204
Query: 152 IFDFTFMYLKEFR 164
+F ++K+ +
Sbjct: 205 LFQRYL-FIKDLK 216
>gnl|CDD|220179 pfam09323, DUF1980, Domain of unknown function (DUF1980). Members
of this family are found in a set of prokaryotic
hypothetical proteins. Their exact function, has not, as
yet, been defined.
Length = 179
Score = 33.1 bits (76), Expect = 0.23
Identities = 13/93 (13%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 76 YIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------ 126
I +I++ + + + +++ I I + I +I+ I+ I+ +
Sbjct: 1 MIRFLILLGFGFLFFYLHVSGKLLLYINPKYIYLAYIAMILFFILAIVQLTRWFKTKKKK 60
Query: 127 -----IIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
++ +I II ++I + + D
Sbjct: 61 HSHEESKPKKLVSYLIFIIPLLIGFLFPPVSLD 93
Score = 31.2 bits (71), Expect = 1.0
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIIIII 120
KYI + I +I+ I+ I+ + ++ +I II ++I +
Sbjct: 30 KYIYLAYIAMILFFILAIVQLTRWFKTKKKKHSHEESKPKKLVSYLIFIIPLLIGFLF 87
Score = 30.4 bits (69), Expect = 2.0
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIII------------IIIIIIIIIIIIIII 119
K YI I + I +I+ I+ I+ + ++ +I II +
Sbjct: 22 KLLLYINPKYIYLAYIAMILFFILAIVQLTRWFKTKKKKHSHEESKPKKLVSYLIFIIPL 81
Query: 120 IIIIII 125
+I +
Sbjct: 82 LIGFLF 87
Score = 29.6 bits (67), Expect = 3.6
Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 12/62 (19%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIII 116
++ + Y+ I +I+ I+ I+ + ++ +I II ++I
Sbjct: 26 YINPKYIYLAYIAMILFFILAIVQLTRWFKTKKKKHSHEESKPKKLVSYLIFIIPLLIGF 85
Query: 117 II 118
+
Sbjct: 86 LF 87
Score = 28.5 bits (64), Expect = 9.1
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 105 IIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+I +I++ + + + +++ I I + I +I+ I+ I+ L F
Sbjct: 1 MIRFLILLGFGFLFFYLHVSGKLLLYINPKYIYLAYIAMILFFILAIVQLTRWFKTKK 58
>gnl|CDD|225205 COG2323, COG2323, Predicted membrane protein [Function unknown].
Length = 224
Score = 33.8 bits (78), Expect = 0.23
Identities = 12/92 (13%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIIIIIIIIIII 124
+ ++ + I +I +I+++++ I +++I + I I + I+
Sbjct: 2 LFLLEVAIRSVIGYLILLLLLRIMGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILP 61
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
II I+ + ++ I++ + + + + +
Sbjct: 62 TIIAILTLALLQILLSYLSLKSRKLRKLLEGK 93
>gnl|CDD|227029 COG4684, COG4684, Predicted membrane protein [Function unknown].
Length = 189
Score = 33.2 bits (76), Expect = 0.24
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+KRS I I ++ +II++ + I I+ I +II I+ +
Sbjct: 4 KKRSD----TRQITIFGALMAVIIVLSSTGYGFWPLPIKPTIMHIPVIIGSIVYGPRVGA 59
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
I+ +++ I II II + + F+ M
Sbjct: 60 ILGLLMGIFSIIQNTIINLPTSYSFSPM 87
>gnl|CDD|223475 COG0398, COG0398, Uncharacterized conserved protein [Function
unknown].
Length = 223
Score = 33.5 bits (77), Expect = 0.26
Identities = 9/88 (10%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 68 EFVRKRSKYIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+ + + I+++ +I I ++ + I I ++ + I+ +
Sbjct: 126 AGLERNGFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSA 185
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ I ++++++ ++I+ + I+
Sbjct: 186 FLGIGSPLLLLVLALLILGVFAIVAKRK 213
Score = 32.7 bits (75), Expect = 0.47
Identities = 12/79 (15%), Positives = 39/79 (49%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+I+ ++ ++ + +II II + ++++++ + I + ++ I++ ++
Sbjct: 1 SLLILRRAKLLAALLFLGVIIGIIYLGLLVLLLDPETLREWIQAYGALGPLVFFILLYLV 60
Query: 135 IIIIIIIIIIIIIIIDLIF 153
+ II I+ + L+F
Sbjct: 61 ATLPIIPGSILTLAGGLLF 79
Score = 30.0 bits (68), Expect = 3.0
Identities = 9/88 (10%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 88 IIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I+++ +I I ++ I ++ + I+ + + I
Sbjct: 133 FWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSAFLGIGSP 192
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
++++++ ++I+ + I + R
Sbjct: 193 LLLLVLALLILGVFAIVAKRKELRRHKR 220
Score = 30.0 bits (68), Expect = 3.5
Identities = 9/93 (9%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIII----------------IIIIIIIIIII 115
++ ++ + +II II + ++++++ ++ I++ ++
Sbjct: 2 LLILRRAKLLAALLFLGVIIGIIYLGLLVLLLDPETLREWIQAYGALGPLVFFILLYLVA 61
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ II I+ + ++ + + +I
Sbjct: 62 TLPIIPGSILTLAGGLLFGPFLGFLYSLIGATA 94
Score = 28.8 bits (65), Expect = 8.6
Identities = 12/79 (15%), Positives = 38/79 (48%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++I+ ++ ++ + +II II + ++++++ + I + ++ I++ ++
Sbjct: 1 SLLILRRAKLLAALLFLGVIIGIIYLGLLVLLLDPETLREWIQAYGALGPLVFFILLYLV 60
Query: 139 IIIIIIIIIIIDLIFDFTF 157
+ II I+ L F
Sbjct: 61 ATLPIIPGSILTLAGGLLF 79
>gnl|CDD|226365 COG3846, TrbL, Type IV secretory pathway, TrbL components
[Intracellular trafficking and secretion].
Length = 452
Score = 34.0 bits (78), Expect = 0.27
Identities = 13/97 (13%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--- 124
+ + S Y I I II+ +++I+ ++ + +++ + + I++ +
Sbjct: 147 DQISNLSFYNIFFINAIILAHVVVILWFFLLAVQFFFLLVEFWLTTLAGFILLGFGLSLE 206
Query: 125 -----IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+ +I + ++ + +II I + T
Sbjct: 207 TLFLAERFLKTVISVGEKLMALALIIGIGSLFLIQQT 243
>gnl|CDD|224945 COG2034, COG2034, Predicted membrane protein [Function unknown].
Length = 85
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 117
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 118 IIIIIIIIIIIIIIIIIII 136
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 118
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 119 IIIIIIIIIIIIIIIIIII 137
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 119
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 120 IIIIIIIIIIIIIIIIIII 138
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 120
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 121 IIIIIIIIIIIIIIIIIII 139
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 121
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 122 IIIIIIIIIIIIIIIIIII 140
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 122
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 123 IIIIIIIIIIIIIIIIIII 141
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 123
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 124 IIIIIIIIIIIIIIIIIII 142
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 124
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 125 IIIIIIIIIIIIIIIIIII 143
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 125
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 126 IIIIIIIIIIIIIIIIIII 144
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 126
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 127 IIIIIIIIIIIIIIIIIII 145
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 127
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 128 IIIIIIIIIIIIIIIIIII 146
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 128
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 129 IIIIIIIIIIIIIIIIIII 147
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 129
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 130 IIIIIIIIIIIIIIIIIII 148
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.5 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 130
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 131 IIIIIIIIIIIIIIIIIII 149
I +++ +I++I+ +++ ++
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 31.1 bits (71), Expect = 0.40
Identities = 16/81 (19%), Positives = 42/81 (51%), Gaps = 19/81 (23%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------I 113
RS+ +II +I+I I ++I + I++ +++I I I+ +
Sbjct: 3 RSEDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRM 62
Query: 114 IIIIIIIIIIIIIIIIIIIII 134
II +++ +I++I+ +++ ++
Sbjct: 63 AIISVVLALILMILWLLLFLL 83
Score = 29.5 bits (67), Expect = 1.1
Identities = 15/79 (18%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 133
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 134 IIIIIIIIIIIIIIIIDLI 152
I +++ +I++I+ +++ L+
Sbjct: 65 ISVVLALILMILWLLLFLL 83
Score = 29.2 bits (66), Expect = 1.6
Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 137
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 138 IIIIIIIIIIIIDLIF 153
I +++ +I++I+ L+
Sbjct: 65 ISVVLALILMILWLLL 80
Score = 28.0 bits (63), Expect = 4.8
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 19/77 (24%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIII------III 136
+II +I+I I ++I + I++ +++I I I+ + I
Sbjct: 5 EDLIIAGLILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGGVVMIGPIPIVFGSSPRMAI 64
Query: 137 IIIIIIIIIIIIIDLIF 153
I +++ +I++I+ L+F
Sbjct: 65 ISVVLALILMILWLLLF 81
>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General
function prediction only].
Length = 453
Score = 34.0 bits (78), Expect = 0.28
Identities = 7/85 (8%), Positives = 40/85 (47%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I I+++ + I+ + + + + +I+ + ++ + + I + ++ + ++I+
Sbjct: 322 AIAILLLAPLAILSLGFWLSFLAVAALILWSQLFRLLGLSWPLPITLALLATLPLLILQF 381
Query: 136 IIIIIIIIIIIIIIDLIFDFTFMYL 160
+ ++ +++ +I+ + +
Sbjct: 382 GRLGLLGLLLNLIVSPLISLISLPG 406
Score = 33.6 bits (77), Expect = 0.34
Identities = 13/100 (13%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIIIIII 119
R S I+++ I I+++ + I+ +I+ + ++ + + I +
Sbjct: 310 RNLSSIFILLLSAIAILLLAPLAILSLGFWLSFLAVAALILWSQLFRLLGLSWPLPITLA 369
Query: 120 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
++ + ++I+ + ++ +++ +I+ +I LI +
Sbjct: 370 LLATLPLLILQFGRLGLLGLLLNLIVSPLISLISLPGLLA 409
Score = 29.8 bits (67), Expect = 5.9
Identities = 9/93 (9%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 71 RKRSKYIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
R + +++ ++ + I + ++++ + ++ + + + I I+++ I
Sbjct: 265 RWIGPALPLLLGLLALFYAILTGFSPSVLRALVMLALALLASLSLRNLSSIFILLLSAIA 324
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
I+++ + I+ + + + + +I+ +F
Sbjct: 325 ILLLAPLAILSLGFWLSFLAVAALILWSQLFRL 357
>gnl|CDD|133949 PHA01399, PHA01399, membrane protein P6.
Length = 242
Score = 33.5 bits (76), Expect = 0.28
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
++K K ++ ++ ++ ++ I+ I I+ II I+ +I+ I I I II+III+
Sbjct: 7 IKKAIKKVVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILIIIL 66
Query: 130 III 132
III
Sbjct: 67 III 69
Score = 32.3 bits (73), Expect = 0.63
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
++ ++ ++ ++ I+ I I+ II I+ +I+ I I I II+III+III
Sbjct: 14 VVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILIIILIIIAAWF 73
Query: 152 IFDFTFMYLK 161
F +L+
Sbjct: 74 FFPAFAAFLQ 83
Score = 31.9 bits (72), Expect = 0.99
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 117
V + V+ I+ I I+ II I+ +I+ I I I II+III+III
Sbjct: 18 VVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILIIILIII 69
Score = 31.9 bits (72), Expect = 1.00
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
F + K I ++ ++ ++ ++ I+ I I+ II I+ +I+ I I I II+
Sbjct: 3 FFKSIKKAIKKVVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIIL 62
Query: 129 IIIIIII 135
III+III
Sbjct: 63 IIILIII 69
Score = 31.9 bits (72), Expect = 1.0
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
V + V K K ++ I+ I I+ II I+ +I+ I I I II+III+III
Sbjct: 14 VVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILIIILIII 69
Score = 31.5 bits (71), Expect = 1.2
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 58 LQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 117
++ A K +V V+ + I+ I I+ II I+ +I+ I I I II+III+
Sbjct: 7 IKKAIKKVVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILIIIL 66
Query: 118 III 120
III
Sbjct: 67 III 69
Score = 31.5 bits (71), Expect = 1.3
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K K I ++ ++ ++ ++ I+ I I+ II I+ +I+ I I I II+II
Sbjct: 5 KSIKKAIKKVVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILII 64
Query: 132 IIIII 136
I+III
Sbjct: 65 ILIII 69
Score = 30.4 bits (68), Expect = 2.6
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
++ ++ ++ ++ I+ I I+ II I+ +I+ I I I II+III+III
Sbjct: 14 VVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILIIILIIIAAWF 73
Query: 148 IIDLIFDF 155
F
Sbjct: 74 FFPAFAAF 81
Score = 30.0 bits (67), Expect = 3.3
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
++ ++ ++ ++ I+ I I+ II I+ +I+ I I I II+III+III
Sbjct: 14 VVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILIIILIII 69
Score = 30.0 bits (67), Expect = 3.3
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++ ++ ++ ++ I+ I I+ II I+ +I+ I I I II+III+III
Sbjct: 14 VVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILIIILIII 69
Score = 30.0 bits (67), Expect = 3.3
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
++ ++ ++ ++ I+ I I+ II I+ +I+ I I I II+III+III
Sbjct: 14 VVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILIIILIII 69
Score = 30.0 bits (67), Expect = 3.3
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
++ ++ ++ ++ I+ I I+ II I+ +I+ I I I II+III+III
Sbjct: 14 VVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILIIILIII 69
Score = 30.0 bits (67), Expect = 3.3
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
++ ++ ++ ++ I+ I I+ II I+ +I+ I I I II+III+III
Sbjct: 14 VVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILIIILIII 69
Score = 30.0 bits (67), Expect = 3.3
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++ ++ ++ ++ I+ I I+ II I+ +I+ I I I II+III+III
Sbjct: 14 VVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILIIILIII 69
>gnl|CDD|147958 pfam06081, DUF939, Bacterial protein of unknown function (DUF939).
This family consists of several hypothetical bacterial
proteins of unknown function.
Length = 141
Score = 32.5 bits (75), Expect = 0.28
Identities = 13/83 (15%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 78 IIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+I II ++ + I I + +++ I + + + + I++ + ++ I++ I
Sbjct: 59 VIGAIIAVLFFELFGYNPISIGLYLLLFIPLTVKLKLEEGIVVSSVTVLHIMVSKSISFF 118
Query: 135 IIIIIIIIIIIIIIIDLIFDFTF 157
+ + ++I+I I + L+ +
Sbjct: 119 LFLNEFLLIMIGIGVALLVNLYM 141
Score = 32.1 bits (74), Expect = 0.44
Identities = 16/98 (16%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIII--------IIIII 115
+KRS + ++ +I II ++ I I + +++ I + I++
Sbjct: 44 KKRSLKTALERLLACVIGAIIAVLFFELFGYNPISIGLYLLLFIPLTVKLKLEEGIVVSS 103
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ ++ I++ I + + ++I+I I + ++++L
Sbjct: 104 VTVLHIMVSKSISFFLFLNEFLLIMIGIGVALLVNLYM 141
>gnl|CDD|223762 COG0690, SecE, Preprotein translocase subunit SecE [Intracellular
trafficking and secretion].
Length = 73
Score = 30.8 bits (70), Expect = 0.29
Identities = 3/26 (11%), Positives = 14/26 (53%)
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIF 153
+I +I+++++ + + +D +
Sbjct: 42 LIRSTLIVLVVVAFFSLFLYGLDQLI 67
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 34.2 bits (79), Expect = 0.29
Identities = 8/52 (15%), Positives = 30/52 (57%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I DF+
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFIQRPLDFS 71
Score = 33.4 bits (77), Expect = 0.43
Identities = 6/50 (12%), Positives = 27/50 (54%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 119
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 15 GLQGKDLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 33.4 bits (77), Expect = 0.53
Identities = 7/49 (14%), Positives = 29/49 (59%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
+ K + + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 16 LQGKDLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 33.4 bits (77), Expect = 0.54
Identities = 6/53 (11%), Positives = 28/53 (52%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
+ + + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 12 NLDGLQGKDLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.6 bits (75), Expect = 0.79
Identities = 6/45 (13%), Positives = 27/45 (60%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ + + I++I+ ++I+ + ++ ++ I + ++I+++ + I
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFI 64
Score = 32.2 bits (74), Expect = 1.1
Identities = 5/47 (10%), Positives = 25/47 (53%)
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
+ + + I++I+ ++I+ + ++ ++ I + ++ M+++
Sbjct: 20 DLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFIQR 66
>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 403
Score = 33.7 bits (78), Expect = 0.29
Identities = 8/64 (12%), Positives = 39/64 (60%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++ +++I +++ I+ ++++ ++I+ ++I+I ++ + ++++ + + + I
Sbjct: 39 FVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVSSNMLMLYMFFELSMFPI 98
Query: 136 IIII 139
+I+I
Sbjct: 99 LIMI 102
Score = 33.0 bits (76), Expect = 0.56
Identities = 11/93 (11%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ +++I +++ I+ ++++ ++I+ ++I+I ++ + ++++ + + + I+
Sbjct: 40 VFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVSSNMLMLYMFFELSMFPIL 99
Query: 140 IIII------------IIIIIIDLIFDFTFMYL 160
I+I+ ++ F F F+++
Sbjct: 100 IMILGYGSQIEKINSSYYLLFYAAFFSFPFLFV 132
Score = 32.6 bits (75), Expect = 0.81
Identities = 8/63 (12%), Positives = 38/63 (60%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ +++I +++ I+ ++++ ++I+ ++I+I ++ + ++++ + + + I+
Sbjct: 40 VFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVSSNMLMLYMFFELSMFPIL 99
Query: 138 III 140
I+I
Sbjct: 100 IMI 102
Score = 32.6 bits (75), Expect = 0.81
Identities = 8/63 (12%), Positives = 38/63 (60%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ +++I +++ I+ ++++ ++I+ ++I+I ++ + ++++ + + + I+
Sbjct: 40 VFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVSSNMLMLYMFFELSMFPIL 99
Query: 139 III 141
I+I
Sbjct: 100 IMI 102
Score = 32.2 bits (74), Expect = 0.89
Identities = 9/68 (13%), Positives = 37/68 (54%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
F ++I +++ I+ ++++ ++I+ ++I+I ++ + ++++ + +
Sbjct: 35 FFDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVSSNMLMLYMFFELS 94
Query: 129 IIIIIIII 136
+ I+I+I
Sbjct: 95 MFPILIMI 102
Score = 29.9 bits (68), Expect = 4.8
Identities = 8/77 (10%), Positives = 35/77 (45%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ + ++ ++ + + +++I +++ I+ ++++ ++I+
Sbjct: 10 FLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSN 69
Query: 145 IIIIIDLIFDFTFMYLK 161
++I+I L+F + L
Sbjct: 70 LLILICLLFFVSSNMLM 86
>gnl|CDD|220321 pfam09624, DUF2393, Protein of unknown function (DUF2393). The
function of this protein is unknown. It is always found
as part of a two-gene operon with IPR013416, a protein
that appears to span the membrane seven times. It has so
far been found in the bacteria Nostoc sp. PCC 7120,
Agrobacterium tumefaciens, Rhizobium meliloti, and
Gloeobacter violaceus.
Length = 149
Score = 32.7 bits (75), Expect = 0.30
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
++ ++I+ + I + + + +II II++I+I ID
Sbjct: 1 LLFLLILFLGIKLKKKSLALSLIIASIILLILIPFFGYKWID 42
Score = 31.1 bits (71), Expect = 0.82
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
++ ++I+ + I + + + +II II++I+I D
Sbjct: 1 LLFLLILFLGIKLKKKSLALSLIIASIILLILIPFFGYKWIDKYT 45
Score = 30.8 bits (70), Expect = 1.2
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++ ++I+ + I + + + +II II++I+I I + + +
Sbjct: 1 LLFLLILFLGIKLKKKSLALSLIIASIILLILIPFFGYKWIDKYTKKPELTLTSTKRLQY 60
Query: 144 IIIIIIDLIF----DFTF 157
I +D FT
Sbjct: 61 SESIYVDGTVTNTGKFTI 78
Score = 30.8 bits (70), Expect = 1.3
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 117
++ ++I+ + I + + + +II II++I+I I
Sbjct: 1 LLFLLILFLGIKLKKKSLALSLIIASIILLILIPFFGYKWI 41
Score = 30.8 bits (70), Expect = 1.3
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
++ ++I+ + I + + + +II II++I+I I
Sbjct: 1 LLFLLILFLGIKLKKKSLALSLIIASIILLILIPFFGYKWI 41
Score = 30.8 bits (70), Expect = 1.3
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 119
++ ++I+ + I + + + +II II++I+I I
Sbjct: 1 LLFLLILFLGIKLKKKSLALSLIIASIILLILIPFFGYKWI 41
Score = 30.8 bits (70), Expect = 1.3
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
++ ++I+ + I + + + +II II++I+I I
Sbjct: 1 LLFLLILFLGIKLKKKSLALSLIIASIILLILIPFFGYKWI 41
Score = 30.8 bits (70), Expect = 1.3
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
++ ++I+ + I + + + +II II++I+I I
Sbjct: 1 LLFLLILFLGIKLKKKSLALSLIIASIILLILIPFFGYKWI 41
Score = 30.8 bits (70), Expect = 1.3
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
++ ++I+ + I + + + +II II++I+I I
Sbjct: 1 LLFLLILFLGIKLKKKSLALSLIIASIILLILIPFFGYKWI 41
Score = 30.8 bits (70), Expect = 1.3
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
++ ++I+ + I + + + +II II++I+I I
Sbjct: 1 LLFLLILFLGIKLKKKSLALSLIIASIILLILIPFFGYKWI 41
Score = 28.1 bits (63), Expect = 8.7
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIIIII 98
++K+S + +II II++I+I I
Sbjct: 10 GIKLKKKSLALSLIIASIILLILIPFFGYKWI 41
>gnl|CDD|225122 COG2212, MnhF, Multisubunit Na+/H+ antiporter, MnhF subunit
[Inorganic ion transport and metabolism].
Length = 89
Score = 31.4 bits (72), Expect = 0.30
Identities = 10/71 (14%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIII 129
+I+ I+++I +II+ + +++ + +I ++ + + ++ I+ ++ I+ I
Sbjct: 1 MILEIMLLIALIILGLALLLALYRVIRGPTLPDRVVALDTLGTNLVGILALLGILTGNTI 60
Query: 130 IIIIIIIIIII 140
+ I +++ ++
Sbjct: 61 YLDIALVLALL 71
Score = 31.4 bits (72), Expect = 0.30
Identities = 10/71 (14%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIII 130
+I+ I+++I +II+ + +++ + +I ++ + + ++ I+ ++ I+ I
Sbjct: 1 MILEIMLLIALIILGLALLLALYRVIRGPTLPDRVVALDTLGTNLVGILALLGILTGNTI 60
Query: 131 IIIIIIIIIII 141
+ I +++ ++
Sbjct: 61 YLDIALVLALL 71
Score = 31.4 bits (72), Expect = 0.30
Identities = 10/71 (14%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIII 131
+I+ I+++I +II+ + +++ + +I ++ + + ++ I+ ++ I+ I
Sbjct: 1 MILEIMLLIALIILGLALLLALYRVIRGPTLPDRVVALDTLGTNLVGILALLGILTGNTI 60
Query: 132 IIIIIIIIIII 142
+ I +++ ++
Sbjct: 61 YLDIALVLALL 71
Score = 31.4 bits (72), Expect = 0.30
Identities = 10/71 (14%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIII 132
+I+ I+++I +II+ + +++ + +I ++ + + ++ I+ ++ I+ I
Sbjct: 1 MILEIMLLIALIILGLALLLALYRVIRGPTLPDRVVALDTLGTNLVGILALLGILTGNTI 60
Query: 133 IIIIIIIIIII 143
+ I +++ ++
Sbjct: 61 YLDIALVLALL 71
Score = 31.4 bits (72), Expect = 0.30
Identities = 10/71 (14%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIII 133
+I+ I+++I +II+ + +++ + +I ++ + + ++ I+ ++ I+ I
Sbjct: 1 MILEIMLLIALIILGLALLLALYRVIRGPTLPDRVVALDTLGTNLVGILALLGILTGNTI 60
Query: 134 IIIIIIIIIII 144
+ I +++ ++
Sbjct: 61 YLDIALVLALL 71
Score = 31.4 bits (72), Expect = 0.30
Identities = 10/71 (14%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIII 134
+I+ I+++I +II+ + +++ + +I ++ + + ++ I+ ++ I+ I
Sbjct: 1 MILEIMLLIALIILGLALLLALYRVIRGPTLPDRVVALDTLGTNLVGILALLGILTGNTI 60
Query: 135 IIIIIIIIIII 145
+ I +++ ++
Sbjct: 61 YLDIALVLALL 71
Score = 31.4 bits (72), Expect = 0.30
Identities = 10/71 (14%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIII 135
+I+ I+++I +II+ + +++ + +I ++ + + ++ I+ ++ I+ I
Sbjct: 1 MILEIMLLIALIILGLALLLALYRVIRGPTLPDRVVALDTLGTNLVGILALLGILTGNTI 60
Query: 136 IIIIIIIIIII 146
+ I +++ ++
Sbjct: 61 YLDIALVLALL 71
Score = 31.4 bits (72), Expect = 0.30
Identities = 10/71 (14%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIII 136
+I+ I+++I +II+ + +++ + +I ++ + + ++ I+ ++ I+ I
Sbjct: 1 MILEIMLLIALIILGLALLLALYRVIRGPTLPDRVVALDTLGTNLVGILALLGILTGNTI 60
Query: 137 IIIIIIIIIII 147
+ I +++ ++
Sbjct: 61 YLDIALVLALL 71
Score = 31.4 bits (72), Expect = 0.30
Identities = 10/71 (14%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIII 137
+I+ I+++I +II+ + +++ + +I ++ + + ++ I+ ++ I+ I
Sbjct: 1 MILEIMLLIALIILGLALLLALYRVIRGPTLPDRVVALDTLGTNLVGILALLGILTGNTI 60
Query: 138 IIIIIIIIIII 148
+ I +++ ++
Sbjct: 61 YLDIALVLALL 71
Score = 31.4 bits (72), Expect = 0.30
Identities = 10/71 (14%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIII 138
+I+ I+++I +II+ + +++ + +I ++ + + ++ I+ ++ I+ I
Sbjct: 1 MILEIMLLIALIILGLALLLALYRVIRGPTLPDRVVALDTLGTNLVGILALLGILTGNTI 60
Query: 139 IIIIIIIIIII 149
+ I +++ ++
Sbjct: 61 YLDIALVLALL 71
Score = 31.4 bits (72), Expect = 0.32
Identities = 11/71 (15%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIII 141
+I+ I+++I +II+ + +++ + +I ++ + + ++ I+ ++ I+ I
Sbjct: 1 MILEIMLLIALIILGLALLLALYRVIRGPTLPDRVVALDTLGTNLVGILALLGILTGNTI 60
Query: 142 IIIIIIIIDLI 152
+ I +++ L+
Sbjct: 61 YLDIALVLALL 71
>gnl|CDD|219993 pfam08733, PalH, PalH/RIM21. PalH (also known as RIM21) is a
transmembrane protein required for proteolytic cleavage
of Rim101/PacC transcription factors which are activated
by C terminal proteolytic processing. Rim101/PacC family
proteins play a key role in pH-dependent responses and
PalH has been implicated as a pH sensor.
Length = 346
Score = 33.8 bits (78), Expect = 0.30
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIIII 113
F R++ K II + +I+I++ I+ I I+ I + + + +
Sbjct: 184 FSRQKEKRIIFWVGLILILVDQILWAILLFHYNNTDPRSASDILPAFIYLFRLALGTLYA 243
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
III I + II + ++ I++I++ ++ I D
Sbjct: 244 AIIIYYTISKKKLCYSYKKIIPLALLTILLILLPVVFFILD 284
Score = 29.6 bits (67), Expect = 5.4
Identities = 13/87 (14%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ I+ I + + + + III I + II + ++ I++I++ ++
Sbjct: 222 SASDILPAFIYLFRLALGTLYAAIIIYYTISKKKLCYSYKKIIPLALLTILLILLPVVFF 281
Query: 133 IIII----------IIIIIIIIIIIII 149
I+ I + ++ + +I
Sbjct: 282 ILDISNWWVREWSELFSWLLYVAATVI 308
Score = 29.2 bits (66), Expect = 8.7
Identities = 14/71 (19%), Positives = 30/71 (42%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
RS I+ I + + + + III I + II + ++ I++I+
Sbjct: 216 NNTDPRSASDILPAFIYLFRLALGTLYAAIIIYYTISKKKLCYSYKKIIPLALLTILLIL 275
Query: 128 IIIIIIIIIII 138
+ ++ I+ I
Sbjct: 276 LPVVFFILDIS 286
>gnl|CDD|219188 pfam06814, Lung_7-TM_R, Lung seven transmembrane receptor. This
family represents a conserved region with eukaryotic
lung seven transmembrane receptors and related proteins.
Length = 287
Score = 33.4 bits (77), Expect = 0.31
Identities = 11/111 (9%), Positives = 36/111 (32%), Gaps = 22/111 (19%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------- 129
+ I ++ + ++ I+ I +++ ++ + ++ + I I
Sbjct: 148 VAGIGLLYFVAACVLFIVRESGIESDSSYKLVLFFLLPLALLDLFFIYWIFRSLSKTLRD 207
Query: 130 --------------IIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVE 166
++ ++ III++ + F T K ++
Sbjct: 208 LKLRRNLVKLSLYRHFTNMLACSVVASFIIILVEKIYFKTTDSCNKYWKTA 258
>gnl|CDD|217705 pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members
of this family are predicted integral membrane proteins
of unknown function. They are about 350 amino acids long
and contain about 6 transmembrane regions. They are
predicted to be permeases although there is no
verification of this.
Length = 354
Score = 33.8 bits (78), Expect = 0.32
Identities = 15/149 (10%), Positives = 57/149 (38%), Gaps = 14/149 (9%)
Query: 4 QVKQYEKEISRLSGTPSIVCLSSNADLNSMSISALKCIQSQLRGDLEKVDKILYLQTATK 63
+ +++ LS TP + S D +S+S L +L+ V K
Sbjct: 218 SILSFDRYEIDLSLTPQDL-SSLTEDPEELSLSELYAYIKRLKASGLDVRKYR------- 269
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+ + + +++ ++ + + + +++ I++ + +++ +
Sbjct: 270 ------AELHRRLALPLSCLVLALLALPLGLGSPRSGRGAGLVLAILLGFLYYVLLFLGE 323
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ ++ I+ + ++ +++ + L+
Sbjct: 324 ALGENGVLPPILAAWLPNLLFLLLGLYLL 352
Score = 32.6 bits (75), Expect = 0.73
Identities = 6/70 (8%), Positives = 46/70 (65%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+YI+ + ++++++++++ +++ ++ ++ I+ + + I+ ++++++ I+ +I+
Sbjct: 1 RYILREFLKPFLLVLLVLLLLFLLVDLLRLLDDILSKGLPLADILRLLLLLLPSILELIL 60
Query: 135 IIIIIIIIII 144
+ +++ +++
Sbjct: 61 PLALLLAVLL 70
Score = 30.3 bits (69), Expect = 3.4
Identities = 4/60 (6%), Positives = 28/60 (46%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
RS +++ I++ + +++ + + ++ I+ + ++ +++ + +++
Sbjct: 294 LGSPRSGRGAGLVLAILLGFLYYVLLFLGEALGENGVLPPILAAWLPNLLFLLLGLYLLL 353
>gnl|CDD|217125 pfam02588, DUF161, Uncharacterized BCR, YitT family COG1284. This
is probably a bacterial ABC transporter permease
(personal obs:Yeats C).
Length = 80
Score = 30.9 bits (71), Expect = 0.32
Identities = 15/80 (18%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIII 129
K + II+ +++ + I + + + + +I+ I I II++II I ++I+ +
Sbjct: 1 KLLAIILGGLLLGLGIGLFLRPGLSTGGTDGLALILSKKFGISIGIILLIINIPLLILGL 60
Query: 130 IIIIIIIIIIIIIIIIIIII 149
+ + + ++ + I+ + I
Sbjct: 61 LFLGFGLYTLLAVFILSLFI 80
Score = 26.6 bits (60), Expect = 9.9
Identities = 12/67 (17%), Positives = 33/67 (49%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
++ II+ +++ + I + + + + +I+ I I II++II I ++I+ +
Sbjct: 1 KLLAIILGGLLLGLGIGLFLRPGLSTGGTDGLALILSKKFGISIGIILLIINIPLLILGL 60
Query: 147 IIIDLIF 153
+ +
Sbjct: 61 LFLGFGL 67
>gnl|CDD|215884 pfam00375, SDF, Sodium:dicarboxylate symporter family.
Length = 388
Score = 33.6 bits (78), Expect = 0.32
Identities = 9/92 (9%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------- 126
+ + I+I +++ +++ + + + + + I ++ ++++ ++ I+
Sbjct: 1 LTLQILIGLVLGVLLGLFFPELAGWLKPLGDLFINLLKMLVVPLVFFSIVSGIASLGDGK 60
Query: 127 ----IIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+ ++ ++ I II +++ L+F
Sbjct: 61 KLGKLGGKTLLYFLVTTAIAAIIGLLVALLFQ 92
Score = 29.4 bits (67), Expect = 6.3
Identities = 5/79 (6%), Positives = 37/79 (46%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ ++ K ++ + + +I+ ++ ++ + I + +I + + + + ++ +
Sbjct: 153 LGEKGKPLLKFLESLNEVIMKVVNWVMKLAPIGVFALIANTVGTFGLGTLGSLGKFVLTV 212
Query: 130 IIIIIIIIIIIIIIIIIII 148
+ + I + ++ +++ +
Sbjct: 213 YLALAIHLFVVYPLLLKFL 231
>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane
(putative immunity) protein. This model represents a
family of integral membrane proteins, most of which are
about 650 residues in size and predicted to span the
membrane seven times. Nearly half of the members of this
family are found in association with a member of the
lactococcin 972 family of bacteriocins (TIGR01653).
Others may be associated with uncharacterized proteins
that may also act as bacteriocins. Although this protein
is suggested to be an immunity protein, and the
bacteriocin is suggested to be exported by a
Sec-dependent process, the role of this protein is
unclear [Cellular processes, Toxin production and
resistance].
Length = 679
Score = 34.0 bits (78), Expect = 0.33
Identities = 11/52 (21%), Positives = 30/52 (57%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
F R +Y++ + + + I+I+ +I I+++ +I ++ I++I+ I+
Sbjct: 615 FFRTYKQYLVSNLAVYVFILILALIFSHAFYILLLFAVIFLLEILLILGILS 666
Score = 33.2 bits (76), Expect = 0.51
Identities = 19/110 (17%), Positives = 49/110 (44%), Gaps = 20/110 (18%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIII------III--------------IIIIIII 111
+ + + I+ I+ +I + II ++++ I+I ++ +
Sbjct: 569 QDALTNLNILFILFALISLSIIYFLVVLYFEQHRKKILIKRLFGYSFFRTYKQYLVSNLA 628
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
+ + I+I+ +I I+++ +I ++ I++I+ I+ L F LK
Sbjct: 629 VYVFILILALIFSHAFYILLLFAVIFLLEILLILGILSKLEKRFFVSILK 678
Score = 30.1 bits (68), Expect = 4.9
Identities = 14/116 (12%), Positives = 52/116 (44%), Gaps = 30/116 (25%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIII---------------------------IIIIIII 107
K + I++I+ +++I+I ++ +I ++ ++I
Sbjct: 164 KDLNILVILALLLIVIFVLFLIYYLMINMKRVAIYRLNGFSLRKILFRLFSKNCTYLLIS 223
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
++I+++ ++ I ++ I ++ + +++++++++II T + L +
Sbjct: 224 ALLILLLSSFLLFIKGYTYLLKDYIFMLSLSVLLLLLLLLIISF---LTLLLLSKM 276
>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein. Members of this protein
family average over 900 residues in length and appear to
have multiple membrane-spanning helices in the
N-terminal half. The extreme C-terminal region consists
of a motif with consensus sequence MSEP, then a
transmembrane alpha helix, then a short region with
several basic residues. This region, hereby dubbed
MSEP-CTERM, resembles other putative sorting signals
associated with the archaeosortase/exosortase protein
family (see TIGR04178). Genes for all members of this
family are found next to a gene for exosortase K.
Length = 920
Score = 33.9 bits (78), Expect = 0.34
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
R + + I I ++ II+I I + +I+I I + +I+ + I+I
Sbjct: 140 RNNGINFAVAVSIPFFIYVLANIILINGSFIGLNHLIMIFAIGATASFLFLILRFLYILI 199
Query: 131 -----------IIIIIIIIIIIIIIIIII---IDLIF-DFTF 157
++I+I++ II ++ + + IF +F+
Sbjct: 200 TRRNLSFKNPELLIVILVGIIFPVLGLALNNNFGGIFGNFSS 241
Score = 31.6 bits (72), Expect = 2.0
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
++S+ I + + I I ++ II+I I + +I+I I + +I+ +
Sbjct: 137 EKSRNNGINFAVAVSIPFFIYVLANIILINGSFIGLNHLIMIFAIGATASFLFLILRFLY 196
Query: 132 IIII----------IIIIIIIIIIIIIIDL 151
I+I ++I+I++ II ++ L
Sbjct: 197 ILITRRNLSFKNPELLIVILVGIIFPVLGL 226
Score = 30.8 bits (70), Expect = 2.8
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ + +++ I +I+ + I + + I I ++ II+I I
Sbjct: 112 LYPLYLLMPAIFYLILDLAFKFTPSEKSRNNGINFAVAVSIPFFIYVLANIILINGSFIG 171
Query: 140 IIIIIIIIIIDLIFDFTFMYLK 161
+ +I+I I F F+ L+
Sbjct: 172 LNHLIMIFAIGATASFLFLILR 193
Score = 30.8 bits (70), Expect = 2.8
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ + +++ I +I+ + I + + I I ++ II+I I
Sbjct: 112 LYPLYLLMPAIFYLILDLAFKFTPSEKSRNNGINFAVAVSIPFFIYVLANIILINGSFIG 171
Query: 133 IIIIIIIIIIIIIIIIIDLIFDFTFM 158
+ +I+I I + LI F ++
Sbjct: 172 LNHLIMIFAIGATASFLFLILRFLYI 197
>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family. This family
includes many hypothetical membrane proteins of unknown
function. Many of the proteins contain two copies of the
aligned region. The family used to be known as DUF6.
Length = 126
Score = 31.8 bits (73), Expect = 0.34
Identities = 9/100 (9%), Positives = 47/100 (47%), Gaps = 26/100 (26%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------------II 117
++I I++I+++ ++ ++ + I+ ++ + + + +I
Sbjct: 27 FLIAGILLILLLFLLRKPFALLSLKAILALLYLGLFGTALGYLLYFYALKYVSASNASVI 86
Query: 118 IIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIII 149
+ + +I+ ++++ ++ I++I++ +++I++
Sbjct: 87 TSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLILL 126
Score = 28.4 bits (64), Expect = 6.8
Identities = 8/98 (8%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 60 TATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIII---------------IIIIIII 104
A ++ R + ++ + I+ ++ + + + +I
Sbjct: 29 IAGILLILLLFLLRKPFALLSLKAILALLYLGLFGTALGYLLYFYALKYVSASNASVITS 88
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ + +I+ ++++ + + ++ I++I++ +++I++
Sbjct: 89 LSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLILL 126
>gnl|CDD|225903 COG3368, COG3368, Predicted permease [General function prediction
only].
Length = 465
Score = 33.6 bits (77), Expect = 0.35
Identities = 13/101 (12%), Positives = 38/101 (37%), Gaps = 12/101 (11%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----- 126
KR I ++I +I I +++ ++I I I ++ +++ ++ + +
Sbjct: 345 KRWFLISKGLLIAVISIALLLTVLIKAFINNINSFLLFFPLVLYFLVSSLFSMRRLSEKI 404
Query: 127 -------IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ I+I+++ I +I+ +
Sbjct: 405 NDADTPNLGSFGGIVILLVNFIAVIVGKAPFFSLSLPVSLI 445
Score = 32.8 bits (75), Expect = 0.66
Identities = 11/87 (12%), Positives = 35/87 (40%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
S + +++ ++ + + + I + I+I+++ I +I+
Sbjct: 373 INNINSFLLFFPLVLYFLVSSLFSMRRLSEKINDADTPNLGSFGGIVILLVNFIAVIVGK 432
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDF 155
+ + + +II +I II+ + +
Sbjct: 433 APFFSLSLPVSLIITVIGIIVGSLLVY 459
>gnl|CDD|147775 pfam05803, Chordopox_L2, Chordopoxvirus L2 protein. This family
consists of several Chordopoxvirus L2 proteins.
Length = 87
Score = 31.1 bits (71), Expect = 0.35
Identities = 13/59 (22%), Positives = 34/59 (57%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ K+ +I+ + ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 29 IEKQQHFILRPFLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 30.0 bits (68), Expect = 0.91
Identities = 9/42 (21%), Positives = 27/42 (64%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
+ ++I ++I++I+I I ++ I++I++++ II++
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEF 81
Score = 30.0 bits (68), Expect = 1.0
Identities = 12/57 (21%), Positives = 33/57 (57%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ ++ I+ + ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 31 KQQHFILRPFLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ ++I ++I++I+I I ++ I++I++++ II+ I I
Sbjct: 40 FLRLLIDVLILVIVINDFTIRLLKRNYQILLILVLLYIIMEFFKYIAI 87
>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily
hydrolase [General function prediction only].
Length = 700
Score = 33.9 bits (78), Expect = 0.35
Identities = 7/72 (9%), Positives = 35/72 (48%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++++ + + I+ + ++ I+ +++ + +++I+++ + I I +I I +
Sbjct: 308 LLLLYLSLAILTLSLLRIVGYFNYSASGLLVPPALGPMLLILLVFLRIAIFSSSMIAIAL 367
Query: 146 IIIIDLIFDFTF 157
+ + ++
Sbjct: 368 LYLFGGSYNSEI 379
>gnl|CDD|240242 PTZ00046, PTZ00046, rifin; Provisional.
Length = 358
Score = 33.4 bits (77), Expect = 0.36
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 132 IIIIIIIIIIIIIIIIIIDLI 152
II I+ I++I++I++II LI
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.8 bits (73), Expect = 1.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIII 99
II I+ I++I++I++II +I
Sbjct: 312 ILQTAIIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 80 IIIIIIIIIIIIIIIIIIIII 100
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 81 IIIIIIIIIIIIIIIIIIIII 101
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 82 IIIIIIIIIIIIIIIIIIIII 102
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 83 IIIIIIIIIIIIIIIIIIIII 103
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 84 IIIIIIIIIIIIIIIIIIIII 104
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 85 IIIIIIIIIIIIIIIIIIIII 105
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 86 IIIIIIIIIIIIIIIIIIIII 106
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 87 IIIIIIIIIIIIIIIIIIIII 107
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 88 IIIIIIIIIIIIIIIIIIIII 108
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 89 IIIIIIIIIIIIIIIIIIIII 109
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 90 IIIIIIIIIIIIIIIIIIIII 110
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 91 IIIIIIIIIIIIIIIIIIIII 111
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 92 IIIIIIIIIIIIIIIIIIIII 112
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 93 IIIIIIIIIIIIIIIIIIIII 113
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 94 IIIIIIIIIIIIIIIIIIIII 114
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 95 IIIIIIIIIIIIIIIIIIIII 115
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 96 IIIIIIIIIIIIIIIIIIIII 116
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 97 IIIIIIIIIIIIIIIIIIIII 117
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 98 IIIIIIIIIIIIIIIIIIIII 118
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 99 IIIIIIIIIIIIIIIIIIIII 119
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 100 IIIIIIIIIIIIIIIIIIIII 120
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 101 IIIIIIIIIIIIIIIIIIIII 121
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 102 IIIIIIIIIIIIIIIIIIIII 122
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 103 IIIIIIIIIIIIIIIIIIIII 123
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 104 IIIIIIIIIIIIIIIIIIIII 124
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 105 IIIIIIIIIIIIIIIIIIIII 125
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 106 IIIIIIIIIIIIIIIIIIIII 126
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 107 IIIIIIIIIIIIIIIIIIIII 127
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 108 IIIIIIIIIIIIIIIIIIIII 128
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 109 IIIIIIIIIIIIIIIIIIIII 129
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 110 IIIIIIIIIIIIIIIIIIIII 130
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 111 IIIIIIIIIIIIIIIIIIIII 131
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 112 IIIIIIIIIIIIIIIIIIIII 132
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 113 IIIIIIIIIIIIIIIIIIIII 133
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 114 IIIIIIIIIIIIIIIIIIIII 134
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 115 IIIIIIIIIIIIIIIIIIIII 135
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 116 IIIIIIIIIIIIIIIIIIIII 136
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 117 IIIIIIIIIIIIIIIIIIIII 137
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 118 IIIIIIIIIIIIIIIIIIIII 138
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 119 IIIIIIIIIIIIIIIIIIIII 139
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 120 IIIIIIIIIIIIIIIIIIIII 140
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 121 IIIIIIIIIIIIIIIIIIIII 141
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 122 IIIIIIIIIIIIIIIIIIIII 142
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 123 IIIIIIIIIIIIIIIIIIIII 143
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 124 IIIIIIIIIIIIIIIIIIIII 144
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 125 IIIIIIIIIIIIIIIIIIIII 145
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 126 IIIIIIIIIIIIIIIIIIIII 146
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 127 IIIIIIIIIIIIIIIIIIIII 147
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 128 IIIIIIIIIIIIIIIIIIIII 148
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 129 IIIIIIIIIIIIIIIIIIIII 149
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
>gnl|CDD|216818 pfam01970, TctA, Tripartite tricarboxylate transporter TctA family.
This family, formerly known as DUF112, is a family of
bacterial and archaeal tripartite tricarboxylate
transporters of the extracytoplasmic solute binding
receptor-dependent transporter group of families,
distinct from the ABC and TRAP-T families. TctA is part
of the tripartite TctABC system which, as characterized
in S. typhimurium, is a secondary carrier that depends
for activity on the extracytoplasmic
tricarboxylate-binding receptor TctC as well as two
integral membrane proteins, TctA and TctB. complete
three-component systems are found only in bacteria. TctA
is a large transmembrane protein with up to 12 predicted
membrane spanning regions in bacteria and up to 11 such
in archaea, with the N-terminal within the cytoplasm.
TctA is thought to be a permease, and in most other
bacteria functions without TctB and TctC molecules.
Length = 418
Score = 33.6 bits (78), Expect = 0.38
Identities = 10/67 (14%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------III 129
Y +I ++I ++++I+ + +I + ++ I I+ II++ ++ I + +
Sbjct: 336 YGLIASLLIANLLLLILGLPLIRLFARLLRIPYRILYPIILVFCVVGAYAINNSMFDVWV 395
Query: 130 IIIIIII 136
+++ ++
Sbjct: 396 MLVFGVL 402
Score = 32.8 bits (76), Expect = 0.71
Identities = 9/69 (13%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------I 130
++ +I ++I ++++I+ + +I + ++ I I+ II++ ++ I +
Sbjct: 334 LVYGLIASLLIANLLLLILGLPLIRLFARLLRIPYRILYPIILVFCVVGAYAINNSMFDV 393
Query: 131 IIIIIIIII 139
++++ ++
Sbjct: 394 WVMLVFGVL 402
Score = 32.4 bits (75), Expect = 0.82
Identities = 15/85 (17%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD- 154
++ +I ++I ++++I+ + +I + ++ I I+ II++ ++ I + +FD
Sbjct: 334 LVYGLIASLLIANLLLLILGLPLIRLFARLLRIPYRILYPIILVFCVVGAYAINNSMFDV 393
Query: 155 -----FTF--MYLKEFRVEQCPLFL 172
F +++ PL L
Sbjct: 394 WVMLVFGVLGYLMRKLGFPLAPLIL 418
Score = 31.7 bits (73), Expect = 1.6
Identities = 9/73 (12%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------- 140
++ +I ++I ++++I+ + +I + ++ I I+ II++ ++ I
Sbjct: 334 LVYGLIASLLIANLLLLILGLPLIRLFARLLRIPYRILYPIILVFCVVGAYAINNSMFDV 393
Query: 141 IIIIIIIIIDLIF 153
++++ ++ +
Sbjct: 394 WVMLVFGVLGYLM 406
>gnl|CDD|70644 pfam07188, KSHV_K8, Kaposi's sarcoma-associated herpesvirus (KSHV)
K8 protein. This family consists of Kaposi's
sarcoma-associated herpesvirus (KSHV) K8 proteins. KSHV
is a human Gammaherpesvirus related to Epstein-Barr
virus (EBV) and herpesvirus saimiri. KSHV open reading
frame K8 encodes a basic region-leucine zipper protein
of 237 aa that homodimerises. K8 interacts and
co-localises with human pfam04855, a cellular
chromatin-remodelling factor, both in vivo and in vitro.
K8 is thought to function as a transcriptional activator
under specific conditions and its transactivation
activity requires its interaction with the cellular
chromatin remodelling factor hSNF5.
Length = 189
Score = 32.9 bits (74), Expect = 0.39
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 16/99 (16%)
Query: 306 PNALDKEGKLLTEDPKWQDTNYVLSNYKTEQCKRPPRLCRQGYACPQFHNSRDKRRSPRT 365
P +L+ E K DP W LS+ PPR + Q R KRR R
Sbjct: 90 PCSLNAETKFHIPDPSW-----TLSH-------TPPR---GPHISQQLPTRRSKRRLHRK 134
Query: 366 FKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQ 404
F+ C K G PA+ ++C H+ T +Q
Sbjct: 135 FEEERL-CTKAKQGAGRPVPASVVKAEVCDQSHSPTRKQ 172
>gnl|CDD|227108 COG4767, VanZ, Glycopeptide antibiotics resistance protein [Defense
mechanisms].
Length = 199
Score = 32.7 bits (75), Expect = 0.40
Identities = 15/90 (16%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--- 125
++ SK +++ ++ + I ++ +++ I I +I+ + ++ +I I
Sbjct: 109 LFKRLSKKKKTLLLGFLLSLFIELLQLLLAIGYTDIDDLILNTLGALLGYLIYRIFRKGF 168
Query: 126 --IIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I +I I + +++II+ + ++I L+
Sbjct: 169 FKIDLIPINSLSVLLIILFTLSVVIGVLLL 198
Score = 32.7 bits (75), Expect = 0.45
Identities = 16/90 (17%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---- 124
F R K +++ ++ + I ++ +++ I I +I+ + ++ +I I
Sbjct: 110 FKRLSKKKKTLLLGFLLSLFIELLQLLLAIGYTDIDDLILNTLGALLGYLIYRIFRKGFF 169
Query: 125 -IIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I +I I + +++II+ + ++I + L+
Sbjct: 170 KIDLIPINSLSVLLIILFTLSVVIGVLLLV 199
Score = 30.4 bits (69), Expect = 2.5
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIII 127
R +I +I I + + I+ II+ I ++ + +++
Sbjct: 64 NRLGSLINLIPFNSIGDFLGLSSTGFFQILGNIILFIPFGFLLPTLFKRLSKKKKTLLLG 123
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIF 153
++ + I ++ +++ I I DLI
Sbjct: 124 FLLSLFIELLQLLLAIGYTDIDDLIL 149
Score = 30.0 bits (68), Expect = 2.7
Identities = 9/73 (12%), Positives = 29/73 (39%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+I +I I + + I+ II+ I ++ + + +++ ++ +
Sbjct: 69 LINLIPFNSIGDFLGLSSTGFFQILGNIILFIPFGFLLPTLFKRLSKKKKTLLLGFLLSL 128
Query: 145 IIIIIDLIFDFTF 157
I ++ L+ +
Sbjct: 129 FIELLQLLLAIGY 141
Score = 29.6 bits (67), Expect = 3.7
Identities = 14/92 (15%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-- 126
+ KR +++ ++ + I ++ +++ I I +I+ + ++ +I I
Sbjct: 108 TLFKRLSKKKKTLLLGFLLSLFIELLQLLLAIGYTDIDDLILNTLGALLGYLIYRIFRKG 167
Query: 127 ------IIIIIIIIIIIIIIIIIIIIIIIDLI 152
I I + +++II+ + ++I ++ L+
Sbjct: 168 FFKIDLIPINSLSVLLIILFTLSVVIGVLLLV 199
>gnl|CDD|220221 pfam09402, MSC, Man1-Src1p-C-terminal domain. MAN1 is an integral
protein of the inner nuclear membrane which binds to
chromatin associated proteins and plays a role in
nuclear organisation. The C terminal nucleoplasmic
region forms a DNA binding winged helix and binds to
Smad. This C-terminal tail is also found in S.
cerevisiae and is thought to consist of three conserved
helices followed by two downstream strands.
Length = 326
Score = 33.2 bits (76), Expect = 0.41
Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 40 CIQSQLRGDLEKVDKILYLQTATKCM--VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIII 97
GD + ++ + C F R ++ ++++ +II+++++ I
Sbjct: 168 EPILSKNGDGSTETQKTLRSSSLAYLPLSCRFRRFVRLFLKRYRLLLLGLIILLLVVFYI 227
Query: 98 IIII 101
I
Sbjct: 228 RYRI 231
Score = 30.1 bits (68), Expect = 4.2
Identities = 6/77 (7%), Positives = 31/77 (40%)
Query: 47 GDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 106
+L++ +++ + + K + + + + + + + +++
Sbjct: 155 KELKENPEVVIRPEPILSKNGDGSTETQKTLRSSSLAYLPLSCRFRRFVRLFLKRYRLLL 214
Query: 107 IIIIIIIIIIIIIIIII 123
+ +II+++++ I I
Sbjct: 215 LGLIILLLVVFYIRYRI 231
>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 363
Score = 33.4 bits (77), Expect = 0.42
Identities = 7/74 (9%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 97 IIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
++ I+++ ++ ++ ++ + + + I + ++ +++ ++++++I+ D
Sbjct: 149 SLLKIVLVGLVAYFVLKNHLSELLSLAGQSPVAALSIFMELLGKLLLAVLLLLLIVAAFD 208
Query: 151 LIFDFTFMYLKEFR 164
+ F Y+K+ +
Sbjct: 209 YFYQR-FQYIKKLK 221
>gnl|CDD|224509 COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large
permease component [Carbohydrate transport and
metabolism].
Length = 379
Score = 33.3 bits (77), Expect = 0.44
Identities = 11/114 (9%), Positives = 48/114 (42%), Gaps = 35/114 (30%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIII 127
S +++++I ++++++ + + I+I+ I++ I + ++ ++ + I +I
Sbjct: 265 SPLVVLLVINLLLLVVGTFMDLTAAILILTPILLPIAAALGIDPVHFGVVFVLNLSIGLI 324
Query: 128 -----------------------------IIIIIIIIIIIIIIIIIIIIIIDLI 152
++ +I+++++I + + + +L+
Sbjct: 325 TPPVGMVLFVASAVGKVPIEAVIKAILPFLVALILVLLLITYFPELSLWLPNLL 378
>gnl|CDD|216575 pfam01566, Nramp, Natural resistance-associated macrophage protein.
The natural resistance-associated macrophage protein
(NRAMP) family consists of Nramp1, Nramp2, and yeast
proteins Smf1 and Smf2. The NRAMP family is a novel
family of functional related proteins defined by a
conserved hydrophobic core of ten transmembrane domains.
This family of membrane proteins are divalent cation
transporters. Nramp1 is an integral membrane protein
expressed exclusively in cells of the immune system and
is recruited to the membrane of a phagosome upon
phagocytosis. By controlling divalent cation
concentrations Nramp1 may regulate the interphagosomal
replication of bacteria. Mutations in Nramp1 may
genetically predispose an individual to susceptibility
to diseases including leprosy and tuberculosis
conversely this might however provide protection form
rheumatoid arthritis. Nramp2 is a multiple divalent
cation transporter for Fe2+, Mn2+ and Zn2+ amongst
others it is expressed at high levels in the intestine;
and is major transferrin-independent iron uptake system
in mammals. The yeast proteins Smf1 and Smf2 may also
transport divalent cations.
Length = 364
Score = 33.3 bits (77), Expect = 0.44
Identities = 6/75 (8%), Positives = 35/75 (46%)
Query: 61 ATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
A ++ F+ R + +I + +I++ ++ ++ + ++++ +++
Sbjct: 277 AGAYVMEGFLGWRIPLWLRRLITRAKAFYPALAVILLGGALLALLGGSPVQLLVLSQVLL 336
Query: 121 IIIIIIIIIIIIIII 135
+++ +I ++++
Sbjct: 337 SLLLPFALIPLLLLT 351
Score = 29.1 bits (66), Expect = 8.7
Identities = 2/50 (4%), Positives = 26/50 (52%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+ +I++ ++ ++ + ++++ +++ +++ +I ++++
Sbjct: 304 FYPALAVILLGGALLALLGGSPVQLLVLSQVLLSLLLPFALIPLLLLTSS 353
>gnl|CDD|237167 PRK12667, PRK12667, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 520
Score = 33.4 bits (77), Expect = 0.44
Identities = 8/74 (10%), Positives = 31/74 (41%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ ++++I I ++ + + + ++I+++ + ++I+
Sbjct: 427 FYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEHKESPSMSVVILVLALAVLILG 486
Query: 139 IIIIIIIIIIIDLI 152
I+ + + I+ LI
Sbjct: 487 ILALFLPEILDSLI 500
Score = 32.6 bits (75), Expect = 0.74
Identities = 7/74 (9%), Positives = 31/74 (41%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
S + + ++++I I ++ + + + ++I+++ + ++
Sbjct: 424 ESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEHKESPSMSVVILVLALAVL 483
Query: 133 IIIIIIIIIIIIII 146
I+ I+ + + I+
Sbjct: 484 ILGILALFLPEILD 497
Score = 30.3 bits (69), Expect = 4.3
Identities = 6/71 (8%), Positives = 29/71 (40%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ ++++I I ++ + + + ++I+++ + ++I+
Sbjct: 427 FYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEHKESPSMSVVILVLALAVLILG 486
Query: 137 IIIIIIIIIII 147
I+ + + I+
Sbjct: 487 ILALFLPEILD 497
Score = 30.3 bits (69), Expect = 4.3
Identities = 6/71 (8%), Positives = 29/71 (40%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ ++++I I ++ + + + ++I+++ + ++I+
Sbjct: 427 FYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEHKESPSMSVVILVLALAVLILG 486
Query: 138 IIIIIIIIIII 148
I+ + + I+
Sbjct: 487 ILALFLPEILD 497
>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21. This
transmembrane region has no known function. Many of the
sequences in this family are annotated as hemolysins,
however this is due to a similarity to Treponema
hyodysenteriae hemolysin C that does not contain this
domain. This domain is found in the N-terminus of the
proteins adjacent to two intracellular CBS domains
pfam00571.
Length = 182
Score = 32.5 bits (75), Expect = 0.44
Identities = 7/114 (6%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-- 123
+ + + + + +++ + I++ + + +++ + +++ ++ ++I++
Sbjct: 45 LLKLLANPDRLLATLLLGNTLANILLGALATLAAAELLLGSLGVLLATLVSTLLILVFGE 104
Query: 124 II----------IIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQ 167
I+ I + + + +++ ++ ++ ++ + + L+ F V+
Sbjct: 105 ILPKTLARRNPERIALRLAPPLRVLMKLLYPLVWLLSKLSNL---LLRLFGVKP 155
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 33.4 bits (77), Expect = 0.47
Identities = 8/77 (10%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------ 122
+ + ++ ++++I+ ++ +++ ++++I I+I II
Sbjct: 219 NPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFD 278
Query: 123 ----IIIIIIIIIIIII 135
++ I + + +I
Sbjct: 279 ERRRLLAAIPLFLFAVI 295
Score = 32.3 bits (74), Expect = 1.00
Identities = 8/79 (10%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---- 123
+ +++ ++ ++++I+ ++ +++ ++++I I+I II
Sbjct: 217 DPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKV 276
Query: 124 ------IIIIIIIIIIIII 136
++ I + + +I
Sbjct: 277 FDERRRLLAAIPLFLFAVI 295
Score = 30.3 bits (69), Expect = 3.9
Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVE 166
+ ++ ++++I+ ++ +++ ++++I I+I II F +
Sbjct: 227 LPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLA- 285
Query: 167 QCPLFLQ 173
PLFL
Sbjct: 286 AIPLFLF 292
Score = 29.9 bits (68), Expect = 5.1
Identities = 8/52 (15%), Positives = 27/52 (51%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+ ++ ++++I+ ++ +++ ++++I I+I II +FD
Sbjct: 227 LPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFD 278
Score = 29.2 bits (66), Expect = 8.3
Identities = 8/69 (11%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------IIII 140
+ ++ ++++I+ ++ +++ ++++I I+I II ++
Sbjct: 227 LPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAA 286
Query: 141 IIIIIIIII 149
I + + +I
Sbjct: 287 IPLFLFAVI 295
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases
[Amino acid transport and metabolism].
Length = 462
Score = 33.4 bits (77), Expect = 0.47
Identities = 3/43 (6%), Positives = 23/43 (53%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
+ Y+ + + ++++++ I +++ + ++++ I ++
Sbjct: 407 TNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 32.6 bits (75), Expect = 0.77
Identities = 2/46 (4%), Positives = 22/46 (47%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 119
+ + + + ++++++ I +++ + ++++ I ++
Sbjct: 404 YPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 31.8 bits (73), Expect = 1.4
Identities = 3/47 (6%), Positives = 22/47 (46%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
Y + + + ++++++ I +++ + ++++ I ++
Sbjct: 403 LYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 31.1 bits (71), Expect = 2.5
Identities = 4/55 (7%), Positives = 27/55 (49%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
K+ K+ + + + + + ++++++ I +++ + ++++ I ++
Sbjct: 395 KKLKFKMPLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
Score = 30.7 bits (70), Expect = 2.9
Identities = 2/41 (4%), Positives = 21/41 (51%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+ + + ++++++ I +++ + ++++ I ++
Sbjct: 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449
>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter.
Length = 377
Score = 33.0 bits (76), Expect = 0.49
Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ I++I++ + +I+ I +II +I+ I+ +I + ++ I I ++++
Sbjct: 1 LGILMILVFLELIMRKRISVIIAALIVAILAALIGGFGADLGPMMEDGISWIAPTFLMLL 60
Query: 140 IIIIIIIIIIDL-IFDF 155
I+ I+ D +FD
Sbjct: 61 FGIMFGGIMEDTGLFDP 77
Score = 30.3 bits (69), Expect = 3.2
Identities = 13/70 (18%), Positives = 35/70 (50%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ I++I++ + +I+ I +II +I+ I+ +I + ++ I I ++++
Sbjct: 1 LGILMILVFLELIMRKRISVIIAALIVAILAALIGGFGADLGPMMEDGISWIAPTFLMLL 60
Query: 137 IIIIIIIIII 146
I+ I+
Sbjct: 61 FGIMFGGIME 70
Score = 30.3 bits (69), Expect = 3.2
Identities = 13/70 (18%), Positives = 35/70 (50%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ I++I++ + +I+ I +II +I+ I+ +I + ++ I I ++++
Sbjct: 1 LGILMILVFLELIMRKRISVIIAALIVAILAALIGGFGADLGPMMEDGISWIAPTFLMLL 60
Query: 138 IIIIIIIIII 147
I+ I+
Sbjct: 61 FGIMFGGIME 70
>gnl|CDD|112384 pfam03563, Bunya_G2, Bunyavirus glycoprotein G2. Bunyavirus has
three genomic segments: small (S), middle-sized (M), and
large (L). The S segment encodes the nucleocapsid and a
non-structural protein. The M segment codes for two
glycoproteins, G1 and G2, and another non-structural
protein (NSm). The L segment codes for an RNA
polymerase. This family contains the G2 glycoprotein
which interacts with the pfam03557 G1 glycoprotein.
Length = 286
Score = 32.8 bits (75), Expect = 0.49
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+I I I +II+ I+ +II I +II+ I ++I + + ++Y
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPIAYLY 227
Score = 32.0 bits (73), Expect = 1.1
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVE 166
+I I I +II+ I+ +II I +II+ I ++I I + + + ++Y K +
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPIAYLYGWLYNKSCKKC 238
Query: 167 QCPLFLQHKCTQHRPFT 183
+ H PFT
Sbjct: 239 KNCGLAYH------PFT 249
Score = 30.5 bits (69), Expect = 3.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
Score = 29.3 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+I I I +II+ I+ +II I +II+ I ++I I I
Sbjct: 179 SMIESICQNIELIILTILTLIIFIFLIILTKTYICYLLIPIFYPI 223
>gnl|CDD|217612 pfam03553, Na_H_antiporter, Na+/H+ antiporter family. This family
includes integral membrane proteins, some of which are
NA+/H+ antiporters.
Length = 302
Score = 33.0 bits (76), Expect = 0.50
Identities = 9/94 (9%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIII 125
I I+ ++++ ++ ++ + ++ + + ++ + I +++I+ +
Sbjct: 36 FVTTIPANILAAFALLMLGFVVGLLRDVGSMLRAEAGARELEELSLLKLPIAVLLILTLS 95
Query: 126 IIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+ + ++ + I+ II + F +Y
Sbjct: 96 GMPVTGVLALGAIVAAFIIALAFQGTDFLDALIY 129
Score = 31.1 bits (71), Expect = 1.7
Identities = 8/57 (14%), Positives = 19/57 (33%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
+ I I + + I I+ ++++ ++ L+ D M E
Sbjct: 14 TTGLAAGFQKTDIFDHIKAHGMFVTTIPANILAAFALLMLGFVVGLLRDVGSMLRAE 70
Score = 29.6 bits (67), Expect = 5.4
Identities = 9/103 (8%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIII 122
I+ ++++ ++ ++ + ++ ++ + I +++I+ + + + +
Sbjct: 43 NILAAFALLMLGFVVGLLRDVGSMLRAEAGARELEELSLLKLPIAVLLILTLSGMPVTGV 102
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
+ + I+ II + + +I + F L
Sbjct: 103 LALGAIVAAFIIALAFQGTDFLDALIYGALAGFIVSTLLGLIS 145
Score = 29.6 bits (67), Expect = 5.7
Identities = 9/78 (11%), Positives = 35/78 (44%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ ++ + I +++I+ + + + ++ + I+ II + + +I +
Sbjct: 76 LEELSLLKLPIAVLLILTLSGMPVTGVLALGAIVAAFIIALAFQGTDFLDALIYGALAGF 135
Query: 136 IIIIIIIIIIIIIIDLIF 153
I+ ++ +I + +D +
Sbjct: 136 IVSTLLGLISLSELDDLL 153
>gnl|CDD|224539 COG1624, COG1624, Uncharacterized conserved protein [Function
unknown].
Length = 247
Score = 32.6 bits (75), Expect = 0.51
Identities = 13/76 (17%), Positives = 41/76 (53%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
K + +I + I+++ +++ +I II + ++ I+ II++ + I+ + ++ ++
Sbjct: 9 KILAYLIDALDILLVSVLLYKLIKIISGTRAVQLLKGILSFIILVELSDILGLTTLLWLL 68
Query: 135 IIIIIIIIIIIIIIID 150
+ I +I +++I
Sbjct: 69 NAALTIGVIALVVIFQ 84
Score = 32.6 bits (75), Expect = 0.52
Identities = 12/68 (17%), Positives = 37/68 (54%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I+++ +++ +I II + ++ I+ II++ + I+ + ++ ++ + I +I +
Sbjct: 20 ILLVSVLLYKLIKIISGTRAVQLLKGILSFIILVELSDILGLTTLLWLLNAALTIGVIAL 79
Query: 145 IIIIIDLI 152
++I I
Sbjct: 80 VVIFQPEI 87
Score = 30.3 bits (69), Expect = 2.6
Identities = 12/65 (18%), Positives = 36/65 (55%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
I+++ +++ +I II + ++ I+ II++ + I+ + ++ ++ + I +I +
Sbjct: 20 ILLVSVLLYKLIKIISGTRAVQLLKGILSFIILVELSDILGLTTLLWLLNAALTIGVIAL 79
Query: 150 DLIFD 154
+IF
Sbjct: 80 VVIFQ 84
>gnl|CDD|225924 COG3389, COG3389, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 277
Score = 32.9 bits (75), Expect = 0.51
Identities = 16/83 (19%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S Y + I++ + I++ I + I I + + ++ + +I++ I ++++ I I
Sbjct: 35 SVYYFVYILVATLFILLAIKLGRKWIFRGIYSVAVASVLFYVFLILLSIFLVLVYAINIA 94
Query: 134 IIIIIIIIIIIII-----IIIDL 151
I + I ++ ++ +IDL
Sbjct: 95 SIGLAIGLVYLLYKYPEWYVIDL 117
Score = 32.1 bits (73), Expect = 0.91
Identities = 12/74 (16%), Positives = 35/74 (47%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ + I++ + I++ I + I I + + ++ + +I++ I ++++ I I
Sbjct: 35 SVYYFVYILVATLFILLAIKLGRKWIFRGIYSVAVASVLFYVFLILLSIFLVLVYAINIA 94
Query: 140 IIIIIIIIIIDLIF 153
I + I ++ L
Sbjct: 95 SIGLAIGLVYLLYK 108
Score = 30.5 bits (69), Expect = 3.0
Identities = 11/74 (14%), Positives = 36/74 (48%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ + I++ + I++ I + I I + + ++ + +I++ I ++++ I
Sbjct: 33 SNSVYYFVYILVATLFILLAIKLGRKWIFRGIYSVAVASVLFYVFLILLSIFLVLVYAIN 92
Query: 136 IIIIIIIIIIIIII 149
I I + I ++ ++
Sbjct: 93 IASIGLAIGLVYLL 106
Score = 30.2 bits (68), Expect = 4.0
Identities = 13/83 (15%), Positives = 41/83 (49%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ + I++ + I++ I + I I + + ++ + +I++ I ++++ I I
Sbjct: 35 SVYYFVYILVATLFILLAIKLGRKWIFRGIYSVAVASVLFYVFLILLSIFLVLVYAINIA 94
Query: 141 IIIIIIIIIDLIFDFTFMYLKEF 163
I + I ++ L++ + Y+ +
Sbjct: 95 SIGLAIGLVYLLYKYPEWYVIDL 117
>gnl|CDD|110122 pfam01098, FTSW_RODA_SPOVE, Cell cycle protein. This entry
includes the following members; FtsW, RodA, SpoVE.
Length = 356
Score = 33.0 bits (76), Expect = 0.53
Identities = 15/81 (18%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 55 ILYLQ---TATKCMVCEFVRKRSKYIIIIIIIIIIIII-------IIIIIIIIIIIIIII 104
IL+L V +R ++I++II ++I++ +++ II+++++ +
Sbjct: 113 ILFLAAYLGRKPDNVRSRLRGFLIPLVIVLIIAVLILLQPDLGTAVLLGIILLVMLFLAG 172
Query: 105 IIIIIIIIIIIIIIIIIIIII 125
+ + + I+ I + I+ +I
Sbjct: 173 LPWKLFLGIVGIGVSPIVTLI 193
Score = 32.6 bits (75), Expect = 0.66
Identities = 13/76 (17%), Positives = 42/76 (55%), Gaps = 10/76 (13%)
Query: 90 IIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ +I ++I++II ++I++ +++ II+++++ + + + + I+ I + I+
Sbjct: 131 LRGFLIPLVIVLIIAVLILLQPDLGTAVLLGIILLVMLFLAGLPWKLFLGIVGIGVSPIV 190
Query: 144 IIIII----IDLIFDF 155
+I++ I + F
Sbjct: 191 TLILLEPYQIKRVTSF 206
Score = 31.1 bits (71), Expect = 2.3
Identities = 22/147 (14%), Positives = 67/147 (45%), Gaps = 42/147 (28%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIII----------------------IIIIIIIIII---- 101
F+RK + Y+ II +++++++ +I I +I+ +
Sbjct: 61 RFLRKWAFYLFIIGLLLLVLVFVIGPSVNGAKRWIRLGGFSIQPSEFAKIALILFLAAYL 120
Query: 102 ----------IIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIII 145
+ +I ++I++II ++I++ +++ II+++++ + + + +
Sbjct: 121 GRKPDNVRSRLRGFLIPLVIVLIIAVLILLQPDLGTAVLLGIILLVMLFLAGLPWKLFLG 180
Query: 146 IIIIDLIFDFTFMYLKEFRVEQCPLFL 172
I+ I + T + L+ +++++ FL
Sbjct: 181 IVGIGVSPIVTLILLEPYQIKRVTSFL 207
>gnl|CDD|213575 TIGR00964, secE_bact, preprotein translocase, SecE subunit,
bacterial. This model represents exclusively the
bacterial (and some organellar) SecE protein. SecE is
part of the core heterotrimer, SecYEG, of the Sec
preprotein translocase system. Other components are the
ATPase SecA, a cytosolic chaperone SecB, and an
accessory complex of SecDF and YajC [Protein fate,
Protein and peptide secretion and trafficking].
Length = 55
Score = 29.9 bits (68), Expect = 0.53
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIF 153
+I I++I+ +I + + ++D +F
Sbjct: 23 LITYTIVVIVFVIFFSLFLFLVDYVF 48
>gnl|CDD|234235 TIGR03503, TIGR03503, TIGR03503 family protein. This set of
conserved hypothetical protein has a phylogenetic range
that closely matches that of TIGR03501, a putative
C-terminal protein targeting signal.
Length = 374
Score = 33.1 bits (76), Expect = 0.54
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIII 97
E K SK+ IIII+ ++I+++ I +
Sbjct: 339 EREAKDSKFWIIIIVGNVVILLLGGIGFFV 368
>gnl|CDD|220468 pfam09913, DUF2142, Predicted membrane protein (DUF2142). This
domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 390
Score = 33.1 bits (76), Expect = 0.57
Identities = 11/89 (12%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ + + + I ++ + ++ I + + + I I+ +I++ + I
Sbjct: 279 AHPLDYVRLFIRNVLSLPSVLAGQFISGGLGWLDTPLPSWLYFIAIVALILLAFAALGAI 338
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+ I+ ++++++I+I+I L ++
Sbjct: 339 SKRLKRKILSLLLVLVIVILIPLALYLSW 367
>gnl|CDD|220287 pfam09546, Spore_III_AE, Stage III sporulation protein AE
(spore_III_AE). This represents the stage III
sporulation protein AE, which is encoded in a spore
formation operon spoIIIAABCDEFGH under the control of
sigma G. A comparative genome analysis of all sequenced
genomes of Firmicutes shows that the proteins are
strictly conserved among the sub-set of
endospore-forming species.
Length = 328
Score = 32.9 bits (76), Expect = 0.59
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIII 127
K I I +III+ I +I I+ + I + ++ I+ + + +I+I
Sbjct: 245 KNAIGIAGLIIIVGICAFPLIKILALAFIYKLAAALVEPIGDKRIVNCLNGVGNSLILIF 304
Query: 128 IIIIIIIIIIIIIIIIII 145
+ + ++ I I II+
Sbjct: 305 AAVASVSLMFFITITIIV 322
Score = 32.1 bits (74), Expect = 0.85
Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIII--- 125
+++ I I +III+ I +I I+ + I + ++ I+ + +
Sbjct: 240 ASLLLKNAIGIAGLIIIVGICAFPLIKILALAFIYKLAAALVEPIGDKRIVNCLNGVGNS 299
Query: 126 IIIIIIIIIIIIIIIIIIIIIII 148
+I+I + + ++ I I II+
Sbjct: 300 LILIFAAVASVSLMFFITITIIV 322
>gnl|CDD|217065 pfam02489, Herpes_glycop_H, Herpesvirus glycoprotein H.
Herpesvirus glycoprotein H (gH) is a virion associated
envelope glycoprotein. Complex formation between gH and
gL has been demonstrated in both virions and infected
cells.
Length = 655
Score = 33.1 bits (76), Expect = 0.61
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIII 99
F R II+II+ I I+ + ++ I
Sbjct: 624 GFYSDRRAVSIILIILYFIGAILALFLLYKIF 655
Score = 29.2 bits (66), Expect = 9.3
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIII 105
V Y + II+II+ I I+ + ++ I
Sbjct: 620 VEITGFYSDRRAVSIILIILYFIGAILALFLLYKIF 655
>gnl|CDD|165279 PHA02975, PHA02975, hypothetical protein; Provisional.
Length = 69
Score = 30.0 bits (67), Expect = 0.62
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 140 IIIIIIIIIIDLIFDFTFMYLK 161
II+II II I I FTF+YLK
Sbjct: 45 IILIIFIIFITCIAVFTFLYLK 66
>gnl|CDD|237465 PRK13673, PRK13673, hypothetical protein; Provisional.
Length = 118
Score = 31.1 bits (71), Expect = 0.62
Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII- 129
SK I+ +I+ + I+III ++I ++ I+ +++ II+I ++ + +
Sbjct: 24 SGGSKKAKILHMILRLFYILIIITGFWLLIRSFGSNHMLYILKMLLGIIVIGLMEMSLAK 83
Query: 130 --------IIIIIIIIIIIIIIIIIIIIDLIFDF 155
I II++++ I++ +I+ L F
Sbjct: 84 RKKGKPTGGFWWIFIIVLVLTILLGLILPLGFGV 117
Score = 28.4 bits (64), Expect = 5.7
Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------I 133
I+ +I+ + I+III ++I ++ I+ +++ II+I ++ + +
Sbjct: 32 ILHMILRLFYILIIITGFWLLIRSFGSNHMLYILKMLLGIIVIGLMEMSLAKRKKGKPTG 91
Query: 134 IIIIIIIIIIIIIIIIDLIFDFTF 157
I II++++ I++ LI F
Sbjct: 92 GFWWIFIIVLVLTILLGLILPLGF 115
>gnl|CDD|234609 PRK00068, PRK00068, hypothetical protein; Validated.
Length = 970
Score = 33.0 bits (76), Expect = 0.64
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 260 KLILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 31.5 bits (72), Expect = 2.1
Identities = 19/117 (16%), Positives = 46/117 (39%), Gaps = 35/117 (29%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIII-----------------IIIIIIIIIIIIIII 114
+RSK +III +III++++ ++ I ++ I++ I + +++
Sbjct: 12 RRSKILIIIALIIILLLLFGPRLVDFYIDWLWFGEVGYRSVFFTKLVTRIVLFIPVGLLV 71
Query: 115 IIIIIIIIIIIIIIIIIIII------------------IIIIIIIIIIIIIIIDLIF 153
I+ I + + + + + + +I I I ++ IF
Sbjct: 72 GGIVFISLWLAYRSRPVFVPKADSNDPVARYRAVVEKRLRLFLIGIPSFIGLLAGIF 128
Score = 30.7 bits (70), Expect = 3.0
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
Y I ++ +I+++I +I I + I++ + I I +++I+ II+
Sbjct: 250 YTDINAVLPAKLILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.7 bits (70), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+I+++I +I I + I++ + I I +++I+ II+
Sbjct: 261 LILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
Score = 30.3 bits (69), Expect = 5.0
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 115
K I+++I +I I + I++ + I I +++I+ II+
Sbjct: 260 KLILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIV 300
>gnl|CDD|203500 pfam06686, SpoIIIAC, Stage III sporulation protein AC/AD protein
family. This family consists of several bacterial stage
III sporulation protein AC (SpoIIIAC) and SpoIIIAD
sequences. The exact function of this family is unknown.
SpoIIIAD is the an uncharacterized protein which is part
of the spoIIIA operon that acts at sporulation stage III
as part of a cascade of events leading to endospore
formation. The operon is regulated by sigmaG.
Length = 58
Score = 29.3 bits (67), Expect = 0.68
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 106 IIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I+ I+ I II + +++ I ++I + III++++I II + + I
Sbjct: 1 EILKIVGIGIIAAFLALVLKDAGKPEIAVLIELAGGIIILLLVIPIITALFETI 54
Score = 28.2 bits (64), Expect = 2.0
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 110 IIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIDLIFDF 155
I+ I+ I II + +++ I ++I + III++++I II +F+
Sbjct: 1 EILKIVGIGIIAAFLALVLKDAGKPEIAVLIELAGGIIILLLVIPIITALFET 53
Score = 27.0 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 103 IIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I+ I+ I II + ++ I ++I + III++++I II + I +L
Sbjct: 1 EILKIVGIGIIAAFLALVLKDAGKPEIAVLIELAGGIIILLLVIPIITALFETIKELF 58
>gnl|CDD|221162 pfam11667, DUF3267, Protein of unknown function (DUF3267). This
family of proteins has no known function.
Length = 107
Score = 30.6 bits (70), Expect = 0.69
Identities = 9/56 (16%), Positives = 32/56 (57%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+++++II++ I+I I+++II I+ + + I + + + + +++++
Sbjct: 44 PKNRFLIILLAPFIVISILLLIIGILPLYSPLFIFLAALNTGGCVGDFLYLLLLLK 99
Score = 28.3 bits (64), Expect = 5.1
Identities = 10/56 (17%), Positives = 29/56 (51%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
K +II++ I+I I+++II I+ + + I + + + + +++++
Sbjct: 44 PKNRFLIILLAPFIVISILLLIIGILPLYSPLFIFLAALNTGGCVGDFLYLLLLLK 99
Score = 27.9 bits (63), Expect = 7.5
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+II++ I+I I+++II I+ + + I + + + D ++
Sbjct: 49 LIILLAPFIVISILLLIIGILPLYSPLFIFLAALNTGGCVGDFLY 93
Score = 27.5 bits (62), Expect = 7.7
Identities = 10/79 (12%), Positives = 34/79 (43%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+S + + + + +II++ I+I I+++II I+ + + I +
Sbjct: 22 GKSNKLKKGFLGMFYATTGTPLPKNRFLIILLAPFIVISILLLIIGILPLYSPLFIFLAA 81
Query: 132 IIIIIIIIIIIIIIIIIID 150
+ + + +++++
Sbjct: 82 LNTGGCVGDFLYLLLLLKQ 100
>gnl|CDD|234638 PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase;
Provisional.
Length = 344
Score = 32.4 bits (75), Expect = 0.69
Identities = 9/56 (16%), Positives = 26/56 (46%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
R K ++ I+I +I +++ ++ + I + + + +I+ I +I+
Sbjct: 114 SARQKLLLQILIALIFALLLYLLGSTSTSLTIPFFKDLSLDLGVILYIPFAYFVIV 169
>gnl|CDD|224147 COG1226, Kch, Kef-type K+ transport systems, predicted NAD-binding
component [Inorganic ion transport and metabolism].
Length = 212
Score = 32.0 bits (72), Expect = 0.71
Identities = 11/68 (16%), Positives = 34/68 (50%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+I +I+ +I ++I I+ + +II+ + I+ ++ I +++I ++L+
Sbjct: 1 LIGLILELIFALLIFAIVRLKRHVIIVGFGRVGQIVARALLASGIPVVVIDSDEDRVELL 60
Query: 153 FDFTFMYL 160
+ + +
Sbjct: 61 RELGLLVV 68
Score = 32.0 bits (72), Expect = 0.88
Identities = 11/78 (14%), Positives = 38/78 (48%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+I +I+ +I ++I I+ + +II+ + I+ ++ I +++I + ++
Sbjct: 1 LIGLILELIFALLIFAIVRLKRHVIIVGFGRVGQIVARALLASGIPVVVIDSDEDRVELL 60
Query: 140 IIIIIIIIIIDLIFDFTF 157
+ +++++ D +
Sbjct: 61 RELGLLVVLGDATREEVL 78
Score = 31.2 bits (70), Expect = 1.5
Identities = 12/94 (12%), Positives = 37/94 (39%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
F R K +II+ + I+ ++ I +++I + ++ + +++++
Sbjct: 15 FAIVRLKRHVIIVGFGRVGQIVARALLASGIPVVVIDSDEDRVELLRELGLLVVLGDATR 74
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
++ I +I+ + D F + +
Sbjct: 75 EEVLEAAGIERARAVIVTLSDDATNVFIVLLARA 108
Score = 28.9 bits (64), Expect = 8.3
Identities = 8/84 (9%), Positives = 32/84 (38%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+ F R ++ I +++I + ++ + +++++ ++ I
Sbjct: 26 IVGFGRVGQIVARALLASGIPVVVIDSDEDRVELLRELGLLVVLGDATREEVLEAAGIER 85
Query: 126 IIIIIIIIIIIIIIIIIIIIIIII 149
+I+ + + I+++ I
Sbjct: 86 ARAVIVTLSDDATNVFIVLLARAI 109
>gnl|CDD|221995 pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein
mannosyltransferase. This family contains members that
are not captured by pfam02366.
Length = 158
Score = 31.4 bits (72), Expect = 0.72
Identities = 5/44 (11%), Positives = 22/44 (50%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 117
SKY +++ +++ +++ + + +I +++ ++I
Sbjct: 114 SKYTAALLLPALLLYLLLGRRWLKSRKPYLAGLIALLVFSPVLI 157
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 32.2 bits (74), Expect = 0.73
Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIII 121
+ I+++ II+ + I + + + +I +I+ +
Sbjct: 81 LTLGPILLVYTAGSIILQAFLGTAAIFGGLSLYALTTKRDLSFLGGFLFAGLIGLIVASL 140
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+ I + + + I I ++I +I+ D
Sbjct: 141 VNIFLPSSALSLAISAIGVLIFSGLILYD 169
Score = 29.8 bits (68), Expect = 4.1
Identities = 10/106 (9%), Positives = 36/106 (33%), Gaps = 9/106 (8%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+ F R + K + ++ + ++ + + I+++ II+ + I +
Sbjct: 52 FVFLLFSRIKKKSSSAALALLFLFTLLEGLTLGPILLVYTAGSIILQAFLGTAAIFGGLS 111
Query: 124 IIIIII---------IIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ + + +I +I+ ++ I + +
Sbjct: 112 LYALTTKRDLSFLGGFLFAGLIGLIVASLVNIFLPSSALSLAISAI 157
Score = 29.5 bits (67), Expect = 5.4
Identities = 12/95 (12%), Positives = 34/95 (35%), Gaps = 16/95 (16%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----------------I 118
++ + ++ + + I+++ II+ + I +
Sbjct: 68 ALALLFLFTLLEGLTLGPILLVYTAGSIILQAFLGTAAIFGGLSLYALTTKRDLSFLGGF 127
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ +I +I+ ++ I + + + I I LIF
Sbjct: 128 LFAGLIGLIVASLVNIFLPSSALSLAISAIGVLIF 162
Score = 28.7 bits (65), Expect = 8.3
Identities = 7/42 (16%), Positives = 21/42 (50%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
++ +I +I+ ++ I + + + I I ++I +I+
Sbjct: 126 GFLFAGLIGLIVASLVNIFLPSSALSLAISAIGVLIFSGLIL 167
>gnl|CDD|213360 cd12826, EcCorA_ZntB-like_u1, uncharacterized bacterial subfamily
of the Escherichia coli CorA-Salmonella typhimurium ZntB
family. A uncharacterized subfamily of the Escherichia
coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like)
family of the MIT superfamily of essential membrane
proteins involved in transporting divalent cations
(uptake or efflux) across membranes. The
EcCorA-ZntB_like family includes the Mg2+ transporters
Escherichia coli and Salmonella typhimurium CorAs, which
can also transport Co2+, and Ni2+. Structures of the
intracellular domain of EcCorA-ZntB_like family members,
Vibrio parahaemolyticus and Salmonella typhimurium ZntB,
form funnel-shaped homopentamers, the tip of the funnel
is formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA. Natural
variants such as GVN and GIN, as in some ZntB family
proteins, may be associated with the transport of
different divalent cations, such as zinc and cadmium.
The functional diversity of MIT transporters may also be
due to minor structural differences regulating gating,
substrate selection, and transport.
Length = 281
Score = 32.2 bits (74), Expect = 0.73
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 76 YIIIIIIIIIIIIIIIII 93
Y ++II+ I+I++I II
Sbjct: 257 YPVVIILSILIVVIEIIY 274
Score = 30.2 bits (69), Expect = 3.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 74 SKYIIIIIIIIIIIIIIIIIII 95
KY ++II+ I+I++I II
Sbjct: 253 WKYGYPVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 80 IIIIIIIIIIIIIIIII 96
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 81 IIIIIIIIIIIIIIIII 97
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 82 IIIIIIIIIIIIIIIII 98
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 83 IIIIIIIIIIIIIIIII 99
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 84 IIIIIIIIIIIIIIIII 100
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 85 IIIIIIIIIIIIIIIII 101
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 86 IIIIIIIIIIIIIIIII 102
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 87 IIIIIIIIIIIIIIIII 103
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 88 IIIIIIIIIIIIIIIII 104
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 89 IIIIIIIIIIIIIIIII 105
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 90 IIIIIIIIIIIIIIIII 106
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 91 IIIIIIIIIIIIIIIII 107
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 92 IIIIIIIIIIIIIIIII 108
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 93 IIIIIIIIIIIIIIIII 109
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 94 IIIIIIIIIIIIIIIII 110
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 95 IIIIIIIIIIIIIIIII 111
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 96 IIIIIIIIIIIIIIIII 112
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 97 IIIIIIIIIIIIIIIII 113
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 98 IIIIIIIIIIIIIIIII 114
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 99 IIIIIIIIIIIIIIIII 115
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 100 IIIIIIIIIIIIIIIII 116
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 101 IIIIIIIIIIIIIIIII 117
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 102 IIIIIIIIIIIIIIIII 118
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 103 IIIIIIIIIIIIIIIII 119
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 104 IIIIIIIIIIIIIIIII 120
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 105 IIIIIIIIIIIIIIIII 121
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 106 IIIIIIIIIIIIIIIII 122
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 107 IIIIIIIIIIIIIIIII 123
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 108 IIIIIIIIIIIIIIIII 124
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 109 IIIIIIIIIIIIIIIII 125
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 110 IIIIIIIIIIIIIIIII 126
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 111 IIIIIIIIIIIIIIIII 127
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 112 IIIIIIIIIIIIIIIII 128
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 113 IIIIIIIIIIIIIIIII 129
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 114 IIIIIIIIIIIIIIIII 130
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 115 IIIIIIIIIIIIIIIII 131
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 116 IIIIIIIIIIIIIIIII 132
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 117 IIIIIIIIIIIIIIIII 133
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 118 IIIIIIIIIIIIIIIII 134
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 119 IIIIIIIIIIIIIIIII 135
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 120 IIIIIIIIIIIIIIIII 136
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 121 IIIIIIIIIIIIIIIII 137
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 122 IIIIIIIIIIIIIIIII 138
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 123 IIIIIIIIIIIIIIIII 139
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 124 IIIIIIIIIIIIIIIII 140
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 125 IIIIIIIIIIIIIIIII 141
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 126 IIIIIIIIIIIIIIIII 142
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 127 IIIIIIIIIIIIIIIII 143
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 128 IIIIIIIIIIIIIIIII 144
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 129 IIIIIIIIIIIIIIIII 145
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 130 IIIIIIIIIIIIIIIII 146
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 131 IIIIIIIIIIIIIIIII 147
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 132 IIIIIIIIIIIIIIIII 148
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.1 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 133 IIIIIIIIIIIIIIIII 149
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
>gnl|CDD|219137 pfam06687, SUR7, SUR7/PalI family. This family consists of several
fungal-specific SUR7 proteins. Its activity regulates
expression of RVS161, a homologue of human endophilin,
suggesting a function for both in endocytosis. The
protein carries four transmembrane domains and is thus
likely to act as an anchoring protein for the eisosome
to the plasma membrane. Eisosomes are the immobile
protein complexes, that include the proteins Pil1 and
Lsp1, which co-localise with sites of protein and lipid
endocytosis at the plasma membrane. SUR7 protein may
play a role in sporulation. This family also includes
PalI which is part of a pH signal transduction cascade.
Based on the similarity of PalI to the yeast Rim9
meiotic signal transduction component it has been
suggested that PalI might be a membrane sensor for
ambient pH.
Length = 205
Score = 31.9 bits (73), Expect = 0.75
Identities = 7/75 (9%), Positives = 28/75 (37%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
F + Y + + I+ I + +I +I+ I+ ++ ++ ++ +
Sbjct: 97 SFRDNLNTYYYLSRFMFIVHPIALFFTVIALILAGILAHFSSPRRGSLVNFLLSLLAFLF 156
Query: 128 IIIIIIIIIIIIIII 142
++ + + +
Sbjct: 157 TLLAAALDTALFVKA 171
Score = 30.0 bits (68), Expect = 3.4
Identities = 6/62 (9%), Positives = 24/62 (38%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
I+ I + +I +I+ I+ ++ ++ ++ + ++ + + +
Sbjct: 114 IVHPIALFFTVIALILAGILAHFSSPRRGSLVNFLLSLLAFLFTLLAAALDTALFVKARN 173
Query: 152 IF 153
F
Sbjct: 174 AF 175
Score = 30.0 bits (68), Expect = 3.6
Identities = 5/62 (8%), Positives = 24/62 (38%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
I+ I + +I +I+ I+ ++ ++ ++ + ++ + + + +
Sbjct: 114 IVHPIALFFTVIALILAGILAHFSSPRRGSLVNFLLSLLAFLFTLLAAALDTALFVKARN 173
Query: 151 LI 152
Sbjct: 174 AF 175
Score = 29.2 bits (66), Expect = 5.1
Identities = 7/83 (8%), Positives = 28/83 (33%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
R + + I+ I + +I +I+ I+ ++ ++ ++ +
Sbjct: 98 FRDNLNTYYYLSRFMFIVHPIALFFTVIALILAGILAHFSSPRRGSLVNFLLSLLAFLFT 157
Query: 130 IIIIIIIIIIIIIIIIIIIIDLI 152
++ + + + + I
Sbjct: 158 LLAAALDTALFVKARNAFNSNGI 180
>gnl|CDD|215958 pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone
oxidoreductase, chain 3.
Length = 102
Score = 30.6 bits (70), Expect = 0.75
Identities = 6/44 (13%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 76 YIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 115
++I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 46 FLIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 29.8 bits (68), Expect = 1.3
Identities = 7/49 (14%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 111 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
+I I+ +I II+++ ++ + + + + + ++I+++ L++++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLLGLLYEW 95
Score = 29.4 bits (67), Expect = 1.8
Identities = 6/46 (13%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 75 KYIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
++ +I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 44 RFFLIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 83 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 84 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 85 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 86 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 87 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 88 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 89 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 90 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 91 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 92 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 93 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 94 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 95 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 96 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 97 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 98 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 99 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 100 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 101 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/43 (13%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 102 IIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+I I+ +I II+++ ++ + + + + + ++I+++
Sbjct: 47 LIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLL 89
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the
multidrug and toxic compound extrusion (MATE) proteins,
similar to Methanocaldococcus jannaschii MJ0709. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 441
Score = 32.5 bits (75), Expect = 0.79
Identities = 19/90 (21%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII- 135
I++ +II II+ I+++ + I++++ ++ + + II + I +I + I+
Sbjct: 92 ILLGLIISIILTIVLLPFLEPILVLMGAGEVLDLAVDYGRIIFLGSIFLIFNNVAYGILR 151
Query: 136 --------IIIIIIIIIIIIIIDLIFDFTF 157
+ ++ I+ II+D IF +T
Sbjct: 152 GEGDTKRAMYAMVAGSILNIILDPIFIYTL 181
>gnl|CDD|215939 pfam00482, T2SF, Type II secretion system (T2SS), protein F. The
original family covered both the regions found by the
current model. The splitting of the family has allowed
the related FlaJ_arch (archaeal FlaJ family) to be
merged with it. Proteins with this domain in form a
platform for the machiney of the Type II secretion
system, as well as the Type 4 pili and the archaeal
flagella. This domain seems to show some similarity to
PF00664 but this may just be due to similarities in the
TM helices (personal obs: C Yeats).
Length = 124
Score = 30.8 bits (70), Expect = 0.80
Identities = 5/40 (12%), Positives = 27/40 (67%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 107
+++ +R + I+ ++ +I++++ +++++I++ I++
Sbjct: 85 DYLEERRELRRKILAALLYPLILLVVALLVLLILLAILLP 124
Score = 29.2 bits (66), Expect = 2.8
Identities = 6/47 (12%), Positives = 28/47 (59%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
E + + + Y+ + I+ ++ +I++++ +++++I++ I++
Sbjct: 78 EVLERLADYLEERRELRRKILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIII 115
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIII 116
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIII 117
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIII 118
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIII 119
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIII 120
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIII 121
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIII 122
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIII 123
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIII 124
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIII 125
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIII 126
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIII 127
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIII 128
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIII 129
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIII 130
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIII 131
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIII 132
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIII 133
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIII 134
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 117 IIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 120 IIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIII 148
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
Score = 28.1 bits (63), Expect = 7.4
Identities = 4/28 (14%), Positives = 21/28 (75%)
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIII 149
I+ ++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILLP 124
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family
and similar proteins. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. MATE has also been identified as a large
multigene family in plants, where the proteins are
linked to disease resistance. A number of family members
are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 420
Score = 32.3 bits (74), Expect = 0.82
Identities = 16/113 (14%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIII----------------IIIIIIIIIIIIIIIIIIIII 111
E V + + + I+I+ + I + +II ++ ++ I++ ++I
Sbjct: 107 EEVIELAATYLTILILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILLDPLLIF 166
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
+ + I + +I +I ++++I + I+ L+ R
Sbjct: 167 GLGPPELGIAGAALATVISYVIGALLLLIYLRKGKKILKFKLSLLKPDLELLR 219
Score = 29.2 bits (66), Expect = 9.1
Identities = 9/91 (9%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIII 128
++ +II ++ ++ I++ ++I + I + +I +I ++++I +
Sbjct: 142 DTRTAMIISVLSNLLNILLDPLLIFGLGPPELGIAGAALATVISYVIGALLLLIYLRKGK 201
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
I+ + ++ + ++ ++ +
Sbjct: 202 KILKFKLSLLKPDLELLRRLLRIGLPSAIQN 232
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters, SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 481
Score = 32.6 bits (75), Expect = 0.85
Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 68 EFVRKR--SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII- 124
E++ +R K ++ + +I + ++I II+ I+ + I++I +I+II
Sbjct: 102 EYLERRFGLKTRLLTSFLFLISRGLATGVMIYAPAIILSTILGWSLWYTILLIGVIVIIY 161
Query: 125 --------IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+I +I ++II + I + ++ L FT
Sbjct: 162 TVLGGIKAVIWTDVIQMVIIFAGLFIALGFLLKGLPVGFT 201
>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182). This
family contains uncharacterized integral membrane
proteins.
Length = 771
Score = 32.5 bits (75), Expect = 0.88
Identities = 8/50 (16%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 127 IIIIIIIIIIIIIIIIIIIIIIIDLI----FDFTFMYLKEFRVEQCPLFL 172
++II+ I+++++++I ++ + D + + ++ + LFL
Sbjct: 5 VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLT-RIGLFL 53
Score = 32.5 bits (75), Expect = 1.0
Identities = 6/55 (10%), Positives = 27/55 (49%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
Y + ++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 236 YTDVHAVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.4 bits (72), Expect = 2.3
Identities = 9/63 (14%), Positives = 31/63 (49%), Gaps = 16/63 (25%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIII----------------IIIIIIIIIIIIIIIII 115
+RSK +II+ I+++++++I ++ + ++ I + +++ +I
Sbjct: 1 RRSKVLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIFF 60
Query: 116 III 118
+ +
Sbjct: 61 LFL 63
Score = 31.0 bits (71), Expect = 2.5
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 31.0 bits (71), Expect = 2.8
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
++ +I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 241 AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
Score = 30.6 bits (70), Expect = 3.8
Identities = 5/45 (11%), Positives = 22/45 (48%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 119
I+ +I +++ ++ I + I + +++++ I++ +
Sbjct: 246 YLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVY 290
>gnl|CDD|165034 PHA02655, PHA02655, hypothetical protein; Provisional.
Length = 94
Score = 29.9 bits (67), Expect = 0.95
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 59 QTATKCMVCEFVRKR----SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
+TA + + + KR S Y II ++ + I I II + I II ++ ++
Sbjct: 7 KTAVYYIYNDTIEKRINDWSHYFIITFLVSLFISICFIIKLDIKEIIKNQYTMLKFVVFT 66
Query: 115 IIIIIIIIIIIIIIIIIIIII 135
I +I +I++I I ++II I
Sbjct: 67 IYLIPFVIVMISCIFLVIIYI 87
>gnl|CDD|217024 pfam02417, Chromate_transp, Chromate transporter. Members of this
family probably act as chromate transporters. Members of
this family are found in both bacteria and
archaebacteria. The proteins are composed of one or two
copies of this region. The alignment contains two
conserved motifs, FGG and PGP.
Length = 169
Score = 31.3 bits (72), Expect = 0.96
Identities = 6/59 (10%), Positives = 27/59 (45%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ ++ +I+ I + + + + I + +++ + +I+I++ ++ I+
Sbjct: 111 AGVKPAVVGLILAAAISLAKKAVKDPLSLAIAALAFLLLAFFKLNPVIVILLAGLLGIL 169
Score = 31.0 bits (71), Expect = 1.1
Identities = 7/82 (8%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIII 127
++I+++ + + + + ++ +I+ I + + I + +
Sbjct: 88 LLILLLAPLYKRFKDSPWVQAFLAGVKPAVVGLILAAAISLAKKAVKDPLSLAIAALAFL 147
Query: 128 IIIIIIIIIIIIIIIIIIIIII 149
++ + +I+I++ ++ I+
Sbjct: 148 LLAFFKLNPVIVILLAGLLGIL 169
Score = 31.0 bits (71), Expect = 1.2
Identities = 8/69 (11%), Positives = 32/69 (46%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K S ++ + + ++ +I+ I + + + + I + +++ + +I+I
Sbjct: 101 KDSPWVQAFLAGVKPAVVGLILAAAISLAKKAVKDPLSLAIAALAFLLLAFFKLNPVIVI 160
Query: 132 IIIIIIIII 140
++ ++ I+
Sbjct: 161 LLAGLLGIL 169
Score = 31.0 bits (71), Expect = 1.2
Identities = 9/72 (12%), Positives = 32/72 (44%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
KR K + + + ++ +I+ I + + + + I + +++ + +
Sbjct: 98 KRFKDSPWVQAFLAGVKPAVVGLILAAAISLAKKAVKDPLSLAIAALAFLLLAFFKLNPV 157
Query: 132 IIIIIIIIIIII 143
I+I++ ++ I+
Sbjct: 158 IVILLAGLLGIL 169
Score = 31.0 bits (71), Expect = 1.4
Identities = 7/83 (8%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 77 IIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIII 125
++I+++ + + + + ++ +I+ I + + + I +
Sbjct: 87 FLLILLLAPLYKRFKDSPWVQAFLAGVKPAVVGLILAAAISLAKKAVKDPLSLAIAALAF 146
Query: 126 IIIIIIIIIIIIIIIIIIIIIII 148
+++ + +I+I++ ++ I+
Sbjct: 147 LLLAFFKLNPVIVILLAGLLGIL 169
Score = 29.8 bits (68), Expect = 2.8
Identities = 6/42 (14%), Positives = 21/42 (50%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 110
+K K + + I + +++ + +I+I++ ++ I+
Sbjct: 128 LAKKAVKDPLSLAIAALAFLLLAFFKLNPVIVILLAGLLGIL 169
>gnl|CDD|233396 TIGR01399, hrcV, type III secretion protein, HrcV family. Members
of this family are closely homologous to the flagellar
biosynthesis protein FlhA (TIGR01398) and should all
participate in type III secretion systems. Examples
include InvA (Salmonella enterica), LcrD (Yersinia
enterocolitica), HrcV (Xanthomonas), etc. Type III
secretion systems resemble flagellar biogenesis systems,
and may share the property of translocating special
classes of peptides through the membrane [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 677
Score = 32.3 bits (74), Expect = 0.97
Identities = 11/51 (21%), Positives = 32/51 (62%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+++ ++++ II ++I+ + +++ I+I I I I +++++I I I +
Sbjct: 5 LVLALLLLAIISMMILPLPTLLVDILIAINITISVLLLMIAIYIPRPLALS 55
>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport. This family represents 5
transmembrane helices.
Length = 175
Score = 31.4 bits (72), Expect = 0.98
Identities = 9/102 (8%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIII----- 117
S+ ++ I++ ++I I+ +++ + ++ + +++ + +
Sbjct: 47 SRKLLRRILLQGLLIAIVTLLVFFLGLLGFGISESGLAQTMAFNTLVLSQLFNALNARSL 106
Query: 118 ---IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+ I + ++++ +++ +++ ++II + + +F T
Sbjct: 107 RRSLFKIGLFSNKLLLLAVLLSLLLQLLIIYVPGLQAVFGTT 148
Score = 29.9 bits (68), Expect = 2.8
Identities = 4/60 (6%), Positives = 31/60 (51%), Gaps = 16/60 (26%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIII----------------IIIIIIIIIIIIIIIIIIIII 115
+K +++ +++ +++ ++II + +I++ + +++++++ + ++
Sbjct: 116 FSNKLLLLAVLLSLLLQLLIIYVPGLQAVFGTTPLSLEQWLIVLGLALVVLLVVELRKLL 175
>gnl|CDD|177156 MTH00093, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 77
Score = 29.4 bits (67), Expect = 0.99
Identities = 9/69 (13%), Positives = 36/69 (52%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+I + I ++++ +I I+I + +++ + I + + ++ + +I ++ +
Sbjct: 1 MIFLFISLLMLFFKYKRLIFILISLEFLMMSLFIYFMYFLNEMMFFYFMCFSVISSVLGM 60
Query: 145 IIIIIDLIF 153
++++ +L F
Sbjct: 61 VVMVGNLKF 69
Score = 29.1 bits (66), Expect = 1.7
Identities = 7/52 (13%), Positives = 27/52 (51%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
KY +I I+I + +++ + I + + ++ + +I ++ +++++
Sbjct: 14 KYKRLIFILISLEFLMMSLFIYFMYFLNEMMFFYFMCFSVISSVLGMVVMVG 65
Score = 28.3 bits (64), Expect = 3.0
Identities = 9/49 (18%), Positives = 26/49 (53%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+I + I ++++ +I I+I + +++ + I + ++ + F FM
Sbjct: 1 MIFLFISLLMLFFKYKRLIFILISLEFLMMSLFIYFMYFLNEMMFFYFM 49
Score = 27.5 bits (62), Expect = 5.3
Identities = 7/65 (10%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 77 IIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+I + I ++++ +I I+I + +++ + I + + ++ + +I ++ +
Sbjct: 1 MIFLFISLLMLFFKYKRLIFILISLEFLMMSLFIYFMYFLNEMMFFYFMCFSVISSVLGM 60
Query: 132 IIIII 136
++++
Sbjct: 61 VVMVG 65
Score = 27.1 bits (61), Expect = 6.8
Identities = 11/75 (14%), Positives = 33/75 (44%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+I + I ++++ +I I+I + +++ + I + + ++ + +I L
Sbjct: 1 MIFLFISLLMLFFKYKRLIFILISLEFLMMSLFIYFMYFLNEMMFFYFMCFSVISSVLGM 60
Query: 154 DFTFMYLKEFRVEQC 168
LK + ++C
Sbjct: 61 VVMVGNLKFYGSDKC 75
Score = 26.7 bits (60), Expect = 8.7
Identities = 6/55 (10%), Positives = 26/55 (47%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
K + I I+I + +++ + I + + ++ + +I ++ +++++
Sbjct: 11 LFFKYKRLIFILISLEFLMMSLFIYFMYFLNEMMFFYFMCFSVISSVLGMVVMVG 65
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 32.2 bits (74), Expect = 1.00
Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+V RK SK + I+I +I +++ I++ + ++ I+ I ++
Sbjct: 215 LVNYM-RKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLS 273
Query: 125 IIIIIIIIIIIIIIIIIIIIIIII 148
+ +I I+ I + I + I
Sbjct: 274 ALAGVINSPILSIALNIFALFAIA 297
Score = 31.9 bits (73), Expect = 1.1
Identities = 11/130 (8%), Positives = 49/130 (37%), Gaps = 26/130 (20%)
Query: 56 LYLQTATKC---------MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIII----- 101
L L+ +V +++ K+ +I + + +++ I+ I ++
Sbjct: 59 LLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLG 118
Query: 102 ------IIIIIIIIIIIIIIIIIIIII--IIII----IIIIIIIIIIIIIIIIIIIIIII 149
+ + +I +++ + + + ++ +++ +I ++++++ +I
Sbjct: 119 NQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNP 178
Query: 150 DLIFDFTFMY 159
+F
Sbjct: 179 ANLFALPSAS 188
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 32.3 bits (74), Expect = 1.0
Identities = 17/122 (13%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 52 VDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 111
+ ++L+L ++ K S ++ ++ + I+ ++++ +I++ ++ I
Sbjct: 492 LPQLLWLLIILGLLLLILGYKWSVPELLGMVGAMFGAFGILGLLVVGLILVPGLVAIGQG 551
Query: 112 IIIIIIIIIII----------------IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
I+ ++ ++ I ++ ++ ++I + II+ II LIF
Sbjct: 552 ILGFEGVLSLLSDVLSYLRLLALGLAGASIASVVNLMTGLLIGSVPFGIILGIIILIFGH 611
Query: 156 TF 157
Sbjct: 612 LL 613
Score = 30.0 bits (68), Expect = 5.6
Identities = 12/89 (13%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
R + I I+ ++ ++II+ ++++I+ + ++ ++ + I+ +++
Sbjct: 477 GFINRVRSGDIKGAILPQLLWLLIILGLLLLILGYKWSVPELLGMVGAMFGAFGILGLLV 536
Query: 129 IIIIIIIIIIII--IIIIIIIIIDLIFDF 155
+ +I++ ++ I I+ ++ L+ D
Sbjct: 537 VGLILVPGLVAIGQGILGFEGVLSLLSDV 565
>gnl|CDD|236066 PRK07597, secE, preprotein translocase subunit SecE; Reviewed.
Length = 64
Score = 29.1 bits (66), Expect = 1.0
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
++ I++++ + + ++DL+F L
Sbjct: 32 LVRSTIVVLVFVAFFALFFYLVDLLFSKLISLL 64
>gnl|CDD|223072 PHA03393, odv-e66, occlusion-derived virus envelope protein E66;
Provisional.
Length = 682
Score = 32.2 bits (74), Expect = 1.0
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNPP 33
Score = 32.2 bits (74), Expect = 1.2
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNPP 33
Score = 31.8 bits (73), Expect = 1.3
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+I++I++II+++IIIII++ +
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNPPNPPP 37
Score = 31.8 bits (73), Expect = 1.5
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+I++I++II+++IIIII++ + L F
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNPPNPPPNPPPPPPPPPTPEDYHDDLDTF 59
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 107
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 108
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 109
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 110
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 111
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 112
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 113
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 115
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 117
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 119
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 31.0 bits (71), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+I++I++II+++IIIII++
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
Score = 30.6 bits (70), Expect = 3.5
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIII 105
++I++II+++IIIII++
Sbjct: 3 IVLILVIIVVVIIIIILLWQSNNNNNTPNP 32
>gnl|CDD|224239 COG1320, MnhG, Multisubunit Na+/H+ antiporter, MnhG subunit
[Inorganic ion transport and metabolism].
Length = 113
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/77 (12%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIII 123
I+ II+ I+++I + ++ I ++ + ++++ +II + ++
Sbjct: 3 ILEIIVSILLLIGALFSLLAAIGLLRFPDVYTRLHAATKATTLGAGLLLLGVIIYFLSLL 62
Query: 124 IIIIIIIIIIIIIIIII 140
+ +I++ + I++
Sbjct: 63 GFFALKLILLALFILLT 79
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/77 (12%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIII 124
I+ II+ I+++I + ++ I ++ + ++++ +II + ++
Sbjct: 3 ILEIIVSILLLIGALFSLLAAIGLLRFPDVYTRLHAATKATTLGAGLLLLGVIIYFLSLL 62
Query: 125 IIIIIIIIIIIIIIIII 141
+ +I++ + I++
Sbjct: 63 GFFALKLILLALFILLT 79
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/77 (12%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIII 125
I+ II+ I+++I + ++ I ++ + ++++ +II + ++
Sbjct: 3 ILEIIVSILLLIGALFSLLAAIGLLRFPDVYTRLHAATKATTLGAGLLLLGVIIYFLSLL 62
Query: 126 IIIIIIIIIIIIIIIII 142
+ +I++ + I++
Sbjct: 63 GFFALKLILLALFILLT 79
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/77 (12%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIII 126
I+ II+ I+++I + ++ I ++ + ++++ +II + ++
Sbjct: 3 ILEIIVSILLLIGALFSLLAAIGLLRFPDVYTRLHAATKATTLGAGLLLLGVIIYFLSLL 62
Query: 127 IIIIIIIIIIIIIIIII 143
+ +I++ + I++
Sbjct: 63 GFFALKLILLALFILLT 79
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/77 (12%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIII 127
I+ II+ I+++I + ++ I ++ + ++++ +II + ++
Sbjct: 3 ILEIIVSILLLIGALFSLLAAIGLLRFPDVYTRLHAATKATTLGAGLLLLGVIIYFLSLL 62
Query: 128 IIIIIIIIIIIIIIIII 144
+ +I++ + I++
Sbjct: 63 GFFALKLILLALFILLT 79
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/77 (12%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIII 128
I+ II+ I+++I + ++ I ++ + ++++ +II + ++
Sbjct: 3 ILEIIVSILLLIGALFSLLAAIGLLRFPDVYTRLHAATKATTLGAGLLLLGVIIYFLSLL 62
Query: 129 IIIIIIIIIIIIIIIII 145
+ +I++ + I++
Sbjct: 63 GFFALKLILLALFILLT 79
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/77 (12%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIII 129
I+ II+ I+++I + ++ I ++ + ++++ +II + ++
Sbjct: 3 ILEIIVSILLLIGALFSLLAAIGLLRFPDVYTRLHAATKATTLGAGLLLLGVIIYFLSLL 62
Query: 130 IIIIIIIIIIIIIIIII 146
+ +I++ + I++
Sbjct: 63 GFFALKLILLALFILLT 79
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/77 (12%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIII 130
I+ II+ I+++I + ++ I ++ + ++++ +II + ++
Sbjct: 3 ILEIIVSILLLIGALFSLLAAIGLLRFPDVYTRLHAATKATTLGAGLLLLGVIIYFLSLL 62
Query: 131 IIIIIIIIIIIIIIIII 147
+ +I++ + I++
Sbjct: 63 GFFALKLILLALFILLT 79
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/77 (12%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIII 131
I+ II+ I+++I + ++ I ++ + ++++ +II + ++
Sbjct: 3 ILEIIVSILLLIGALFSLLAAIGLLRFPDVYTRLHAATKATTLGAGLLLLGVIIYFLSLL 62
Query: 132 IIIIIIIIIIIIIIIII 148
+ +I++ + I++
Sbjct: 63 GFFALKLILLALFILLT 79
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/77 (12%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIII 132
I+ II+ I+++I + ++ I ++ + ++++ +II + ++
Sbjct: 3 ILEIIVSILLLIGALFSLLAAIGLLRFPDVYTRLHAATKATTLGAGLLLLGVIIYFLSLL 62
Query: 133 IIIIIIIIIIIIIIIII 149
+ +I++ + I++
Sbjct: 63 GFFALKLILLALFILLT 79
Score = 28.8 bits (65), Expect = 3.2
Identities = 11/85 (12%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIII 135
I+ II+ I+++I + ++ I ++ + ++++ +II + ++
Sbjct: 3 ILEIIVSILLLIGALFSLLAAIGLLRFPDVYTRLHAATKATTLGAGLLLLGVIIYFLSLL 62
Query: 136 IIIIIIIIIIIIIIDLIFDFTFMYL 160
+ +I++ + I L +
Sbjct: 63 GFFALKLILLALFILLTAPVGAHAI 87
Score = 28.8 bits (65), Expect = 3.8
Identities = 9/77 (11%), Positives = 34/77 (44%), Gaps = 19/77 (24%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIII-------------------IIIIIIIIIIIIIIII 116
+ II+ I+++I + ++ I ++ ++++ +II + ++
Sbjct: 3 ILEIIVSILLLIGALFSLLAAIGLLRFPDVYTRLHAATKATTLGAGLLLLGVIIYFLSLL 62
Query: 117 IIIIIIIIIIIIIIIII 133
+ +I++ + I++
Sbjct: 63 GFFALKLILLALFILLT 79
>gnl|CDD|163046 TIGR02862, spore_BofA, pro-sigmaK processing inhibitor BofA.
Members of this protein family are found only in
endospore-forming bacteria, such as Bacillus subtilis
and Clostridium tetani. Among such bacteria, it appears
only Symbiobacterium thermophilum lacks a member of this
family. The protein, designated BofA, is an integral
membrane protein that regulates the proteolytic
activation of the RNA polymerase sigma factor K
[Cellular processes, Sporulation and germination].
Length = 83
Score = 29.6 bits (67), Expect = 1.1
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ II II+ ++I+++I+ + + +I I +II +++ I+ + I I I ++
Sbjct: 1 ELIISIILGLVILLLIVGAPVKPLRLIGKAAINLIIGALLLFIVNVFGGAFGIHIPINLV 60
Query: 135 IIIIIIII----IIIIIIIDLIF 153
I + I +++ I L
Sbjct: 61 TATIAGFLGLPGIALLVAIKLFI 83
Score = 27.2 bits (61), Expect = 6.5
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+II II+ ++I+++I+ + + +I I+LI +++
Sbjct: 1 ELIISIILGLVILLLIVGAPVKPLRLIGKAAINLIIGALLLFI 43
Score = 26.9 bits (60), Expect = 9.1
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+II II+ ++I+++I+ + + +I I +II +++ I+ + F
Sbjct: 1 ELIISIILGLVILLLIVGAPVKPLRLIGKAAINLIIGALLLFIVNVFGGAFGIH 54
>gnl|CDD|233430 TIGR01477, RIFIN, variant surface antigen, rifin family. This
model represents the rifin branch of the rifin/stevor
family (pfam02009) of predicted variant surface antigens
as found in Plasmodium falciparum. This model is based
on a set of rifin sequences kindly provided by Matt
Berriman from the Sanger Center. This is a global model
and assesses a penalty for incomplete sequence.
Additional fragmentary sequences may be found with the
fragment model and a cutoff of 20 bits.
Length = 353
Score = 32.0 bits (73), Expect = 1.1
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 132 IIIIIIIIIIIIIIIIIIDLI 152
II II I+II++I++II LI
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 31.6 bits (72), Expect = 1.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIII 100
+ Y II II I+II++I++II +I
Sbjct: 306 TNYYTPIIASIIAILIIVLIMVIIYLI 332
Score = 31.2 bits (71), Expect = 1.9
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 60 TATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 108
ATK + + + II II I+II++I++II +I
Sbjct: 284 AATKATTATATKATTALVEATTTNYYTPIIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 89 IIIIIIIIIIIIIIIIIIIII 109
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 90 IIIIIIIIIIIIIIIIIIIII 110
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 91 IIIIIIIIIIIIIIIIIIIII 111
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 92 IIIIIIIIIIIIIIIIIIIII 112
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 93 IIIIIIIIIIIIIIIIIIIII 113
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 94 IIIIIIIIIIIIIIIIIIIII 114
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 95 IIIIIIIIIIIIIIIIIIIII 115
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 96 IIIIIIIIIIIIIIIIIIIII 116
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 97 IIIIIIIIIIIIIIIIIIIII 117
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 98 IIIIIIIIIIIIIIIIIIIII 118
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 99 IIIIIIIIIIIIIIIIIIIII 119
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 100 IIIIIIIIIIIIIIIIIIIII 120
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 101 IIIIIIIIIIIIIIIIIIIII 121
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 102 IIIIIIIIIIIIIIIIIIIII 122
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 103 IIIIIIIIIIIIIIIIIIIII 123
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 104 IIIIIIIIIIIIIIIIIIIII 124
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 105 IIIIIIIIIIIIIIIIIIIII 125
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 106 IIIIIIIIIIIIIIIIIIIII 126
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 107 IIIIIIIIIIIIIIIIIIIII 127
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 108 IIIIIIIIIIIIIIIIIIIII 128
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 109 IIIIIIIIIIIIIIIIIIIII 129
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 110 IIIIIIIIIIIIIIIIIIIII 130
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 111 IIIIIIIIIIIIIIIIIIIII 131
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 112 IIIIIIIIIIIIIIIIIIIII 132
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 113 IIIIIIIIIIIIIIIIIIIII 133
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 114 IIIIIIIIIIIIIIIIIIIII 134
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 115 IIIIIIIIIIIIIIIIIIIII 135
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 116 IIIIIIIIIIIIIIIIIIIII 136
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 117 IIIIIIIIIIIIIIIIIIIII 137
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 118 IIIIIIIIIIIIIIIIIIIII 138
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 119 IIIIIIIIIIIIIIIIIIIII 139
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 120 IIIIIIIIIIIIIIIIIIIII 140
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 121 IIIIIIIIIIIIIIIIIIIII 141
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 122 IIIIIIIIIIIIIIIIIIIII 142
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 123 IIIIIIIIIIIIIIIIIIIII 143
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 124 IIIIIIIIIIIIIIIIIIIII 144
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 125 IIIIIIIIIIIIIIIIIIIII 145
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 126 IIIIIIIIIIIIIIIIIIIII 146
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 127 IIIIIIIIIIIIIIIIIIIII 147
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 128 IIIIIIIIIIIIIIIIIIIII 148
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 129 IIIIIIIIIIIIIIIIIIIII 149
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
>gnl|CDD|163445 TIGR03733, lanti_perm_MutG, lantibiotic protection ABC transporter
permease subunit, MutG family. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family is largely restricted to
gallidermin-family lantibiotic cassettes, but also
include orphan transporter cassettes in species that
lack candidate lantibiotic precursor and synthetase
genes. In most species, this subunit is paralogous to an
adjacent gene modeled separate by TIGR03732, while in
some species only one subunit is found.
Length = 248
Score = 31.5 bits (72), Expect = 1.1
Identities = 13/87 (14%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 50 EKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 109
E L + TK ++ SK +++++ + I I + ++ + + +
Sbjct: 72 ESAGNFKNLLSTTKSKYKAYL---SKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPL 128
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ +I +++II + + II + +
Sbjct: 129 SLFLIAALLLIIGSLFLYIIHLFVSFA 155
Score = 31.5 bits (72), Expect = 1.3
Identities = 10/62 (16%), Positives = 30/62 (48%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
++++++ + I I + ++ + + + + +I +++II + + II L F
Sbjct: 95 LLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSF 154
Query: 156 TF 157
F
Sbjct: 155 AF 156
Score = 31.1 bits (71), Expect = 1.8
Identities = 10/70 (14%), Positives = 33/70 (47%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
SKY + ++++++ + I I + ++ + + + + +I +++II + +
Sbjct: 86 SKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFL 145
Query: 134 IIIIIIIIII 143
II + +
Sbjct: 146 YIIHLFVSFA 155
Score = 30.4 bits (69), Expect = 3.0
Identities = 8/62 (12%), Positives = 30/62 (48%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
++++++ + I I + ++ + + + + +I +++II + + II + +
Sbjct: 95 LLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSF 154
Query: 152 IF 153
F
Sbjct: 155 AF 156
Score = 29.6 bits (67), Expect = 4.6
Identities = 10/78 (12%), Positives = 35/78 (44%)
Query: 63 KCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
K ++ K Y+ ++++++ + I I + ++ + + + + +I ++
Sbjct: 78 KNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALL 137
Query: 123 IIIIIIIIIIIIIIIIII 140
+II + + II + +
Sbjct: 138 LIIGSLFLYIIHLFVSFA 155
>gnl|CDD|205037 pfam12716, Apq12, Nuclear pore assembly and biogenesis. This is a
family of conserved fungal proteins involved in nuclear
pore assembly. Apq12 is an integral membrane protein of
the nuclear envelope (NE) and endoplasmic reticulum. Its
absence leads to a partial block in mRNA export and
cold-sensitive defects in the growth and localisation of
a subset of nucleoporins, particularly those
asymmetrically localised to the cytoplasmic fibrils. The
defects in nuclear pore assembly appear to be due to
defects in regulating membrane fluidity.
Length = 54
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/48 (12%), Positives = 29/48 (60%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
Score = 28.8 bits (65), Expect = 1.2
Identities = 6/50 (12%), Positives = 29/50 (58%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
++ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + ++
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYVYL 53
Score = 28.4 bits (64), Expect = 1.7
Identities = 7/50 (14%), Positives = 30/50 (60%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
++ I+ +++I+ I + I+ +++ +I+++ ++ + ++ ++YL
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYVYL 53
Score = 27.6 bits (62), Expect = 2.7
Identities = 6/48 (12%), Positives = 28/48 (58%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+ I+ +++I+ I + I+ +++ +I+++ ++ + I+ + + +
Sbjct: 4 LVSILFLLLILYISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYV 51
>gnl|CDD|218875 pfam06053, DUF929, Domain of unknown function (DUF929). Family
of proteins from the archaeon Sulfolobus, with
undetermined function.
Length = 249
Score = 31.7 bits (72), Expect = 1.1
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 74 SKYIIIIIIIIIIIIIIIIIII 95
SK I+I I+++II+III + +
Sbjct: 1 SKLIVIAIVVLIIVIIIGVYLS 22
Score = 29.7 bits (67), Expect = 4.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 133 IIIIIIIIIIIIIIIIIDLIF 153
+I+I I+++II+III + L
Sbjct: 3 LIVIAIVVLIIVIIIGVYLSA 23
Score = 29.4 bits (66), Expect = 5.3
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 131 IIIIIIIIIIIIIIIIIIIDLI 152
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLSAP 24
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 77 IIIIIIIIIIIIIIIIIIII 96
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 78 IIIIIIIIIIIIIIIIIIII 97
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 79 IIIIIIIIIIIIIIIIIIII 98
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 80 IIIIIIIIIIIIIIIIIIII 99
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 81 IIIIIIIIIIIIIIIIIIII 100
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 82 IIIIIIIIIIIIIIIIIIII 101
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 83 IIIIIIIIIIIIIIIIIIII 102
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 84 IIIIIIIIIIIIIIIIIIII 103
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 85 IIIIIIIIIIIIIIIIIIII 104
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 86 IIIIIIIIIIIIIIIIIIII 105
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 87 IIIIIIIIIIIIIIIIIIII 106
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 88 IIIIIIIIIIIIIIIIIIII 107
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 89 IIIIIIIIIIIIIIIIIIII 108
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 90 IIIIIIIIIIIIIIIIIIII 109
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 91 IIIIIIIIIIIIIIIIIIII 110
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 92 IIIIIIIIIIIIIIIIIIII 111
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 93 IIIIIIIIIIIIIIIIIIII 112
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 94 IIIIIIIIIIIIIIIIIIII 113
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 95 IIIIIIIIIIIIIIIIIIII 114
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 96 IIIIIIIIIIIIIIIIIIII 115
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 97 IIIIIIIIIIIIIIIIIIII 116
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 98 IIIIIIIIIIIIIIIIIIII 117
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 99 IIIIIIIIIIIIIIIIIIII 118
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 100 IIIIIIIIIIIIIIIIIIII 119
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 101 IIIIIIIIIIIIIIIIIIII 120
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 102 IIIIIIIIIIIIIIIIIIII 121
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 103 IIIIIIIIIIIIIIIIIIII 122
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 104 IIIIIIIIIIIIIIIIIIII 123
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 105 IIIIIIIIIIIIIIIIIIII 124
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 106 IIIIIIIIIIIIIIIIIIII 125
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 107 IIIIIIIIIIIIIIIIIIII 126
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 108 IIIIIIIIIIIIIIIIIIII 127
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 109 IIIIIIIIIIIIIIIIIIII 128
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 110 IIIIIIIIIIIIIIIIIIII 129
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 111 IIIIIIIIIIIIIIIIIIII 130
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 112 IIIIIIIIIIIIIIIIIIII 131
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 113 IIIIIIIIIIIIIIIIIIII 132
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 114 IIIIIIIIIIIIIIIIIIII 133
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 115 IIIIIIIIIIIIIIIIIIII 134
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 116 IIIIIIIIIIIIIIIIIIII 135
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 117 IIIIIIIIIIIIIIIIIIII 136
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 118 IIIIIIIIIIIIIIIIIIII 137
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 119 IIIIIIIIIIIIIIIIIIII 138
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 120 IIIIIIIIIIIIIIIIIIII 139
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 121 IIIIIIIIIIIIIIIIIIII 140
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 122 IIIIIIIIIIIIIIIIIIII 141
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 123 IIIIIIIIIIIIIIIIIIII 142
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 124 IIIIIIIIIIIIIIIIIIII 143
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 125 IIIIIIIIIIIIIIIIIIII 144
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 126 IIIIIIIIIIIIIIIIIIII 145
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 127 IIIIIIIIIIIIIIIIIIII 146
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 128 IIIIIIIIIIIIIIIIIIII 147
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 129 IIIIIIIIIIIIIIIIIIII 148
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
Score = 29.0 bits (65), Expect = 8.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 130 IIIIIIIIIIIIIIIIIIII 149
+I+I I+++II+III + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLS 22
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 32.1 bits (74), Expect = 1.2
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
E++ KR + ++ I+ + + I++ + + + + I I III+++ II II
Sbjct: 105 EYLEKRFGPSARVYASLLFILFQLGRMGIVLYLPALALSAVTGINIYIIILLMGIITIIY 164
Query: 128 -------------IIIIIIIIIIIIIIIIIIIIIID 150
+I I+++ ++ +IIII I
Sbjct: 165 TVLGGIEAVIWTDVIQGIVLLGGALLCLIIIIFKIP 200
>gnl|CDD|219078 pfam06541, DUF1113, Protein of unknown function (DUF1113). This
family consists of several bacterial proteins of unknown
function.
Length = 157
Score = 30.9 bits (71), Expect = 1.2
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
++ ++++ I ++ +I I II +I+++++IID+I
Sbjct: 112 LLGVLLVKFIHPFVLGLIERIPRKTGYIIALILLVLMIIDIIV 154
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed.
Length = 404
Score = 31.9 bits (73), Expect = 1.2
Identities = 21/110 (19%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----III--------- 117
+ + I+ +II +I + +I+ + I I++ +I++ ++
Sbjct: 99 EQHYRERILTLIIAVIQSLAVILSLPSKERISQTNILLNTLILVTGTMFLVWLSDLNARY 158
Query: 118 -----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
+ I+++ +I I +I I I+II++I+ +I F+Y E
Sbjct: 159 GIGGPMPIVLVSMIKSIPQDVIEYIDASHIVIILLILLVIITLFFLYFIE 208
Score = 31.9 bits (73), Expect = 1.2
Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 19/116 (16%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----III----------- 113
R+R +II +I + +I+ + I I++ +I++ ++
Sbjct: 101 HYRERILTLIIAVIQSLAVILSLPSKERISQTNILLNTLILVTGTMFLVWLSDLNARYGI 160
Query: 114 ---IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVE 166
+ I+++ +I I +I I I+II++I+++II L F + F+ L E+R+
Sbjct: 161 GGPMPIVLVSMIKSIPQDVIEYIDASHIVIILLILLVIITLFFLY-FIELVEYRIP 215
>gnl|CDD|218768 pfam05832, DUF846, Eukaryotic protein of unknown function (DUF846).
This family consists of several of unknown function
from a variety of eukaryotic organisms.
Length = 141
Score = 30.7 bits (70), Expect = 1.2
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
+ ++ ++ I++ ++ + I+ IIII+ L DF
Sbjct: 6 VACFFHLLFKLLAILLYLLGGLFSDNFILQFIIIILLLSLDF 47
Score = 28.8 bits (65), Expect = 6.0
Identities = 7/44 (15%), Positives = 22/44 (50%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ ++ ++ I++ ++ + I+ IIII+++ +D
Sbjct: 6 VACFFHLLFKLLAILLYLLGGLFSDNFILQFIIIILLLSLDFWL 49
>gnl|CDD|220495 pfam09971, DUF2206, Predicted membrane protein (DUF2206). This
domain, found in various hypothetical archaeal proteins,
has no known function.
Length = 367
Score = 32.0 bits (73), Expect = 1.2
Identities = 18/99 (18%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIII 120
+R+RSK + + + + I++ I++ + + I ++ + II I +
Sbjct: 139 LIRRRSKKSLEYLAFSFLFLAILVASIVLPFFASVMNVTRLYHITLVFLAPFFIIGFITL 198
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
I I+ + I I + I I +++ +F+ F+
Sbjct: 199 IENIVKVFNRIHTIPLKKSYKIFSIFLVVYFLFNSGFIQ 237
>gnl|CDD|226580 COG4095, COG4095, Uncharacterized conserved protein [Function
unknown].
Length = 89
Score = 29.6 bits (67), Expect = 1.3
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIII 127
+ I +I I I+ + +I II I + + II+ I + + +I I+I +
Sbjct: 2 DFFIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDL 61
Query: 128 IIIIIIIIIIIIIIIIIIIIIID 150
III II I+ +II+ I
Sbjct: 62 PIIIANIISFILSLIILFYKIKY 84
Score = 29.2 bits (66), Expect = 2.0
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
K + I + + II+ I + + +I I+I + III II I+ +II+ I I
Sbjct: 31 KNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFYKIKYI 85
Score = 27.7 bits (62), Expect = 6.8
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIII 131
I +I I I+ + +I II I + + II+ I + + +I I+I +
Sbjct: 3 FFIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLP 62
Query: 132 IIIIIIIIIIIIIIIIIIDLIF 153
III II I+ +II+ + +
Sbjct: 63 IIIANIISFILSLIILFYKIKY 84
>gnl|CDD|219417 pfam07457, DUF1516, Protein of unknown function (DUF1516). This
family contains a number of hypothetical bacterial
proteins of unknown function approximately 120 residues
long.
Length = 109
Score = 29.9 bits (68), Expect = 1.3
Identities = 16/84 (19%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII- 129
K+SK I+ +I+ + ++III +++I ++ I+ +++ + +I ++ + +
Sbjct: 25 SKKSKKAKILHMILRLFYLLIIITGFLLLIRTFAGFPMLYILKMLLGLGVIGLMEMSLAR 84
Query: 130 --------IIIIIIIIIIIIIIII 145
I I II++++ I++
Sbjct: 85 KKKGKPSHGIWWIFIILLVLTILL 108
>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence
factor [General function prediction only].
Length = 518
Score = 31.9 bits (73), Expect = 1.4
Identities = 4/69 (5%), Positives = 37/69 (53%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ +I+ +++ I+ ++ ++ + ++ +++I + ++++++++ + +++
Sbjct: 446 WGLFLILKLLLASAIMAAALLALLHLAQREWLLGGLLLIRLGVLLLLVLLGAGVYFAMLL 505
Query: 147 IIIDLIFDF 155
++ + F
Sbjct: 506 LLGFRVRGF 514
>gnl|CDD|224203 COG1284, COG1284, Uncharacterized conserved protein [Function
unknown].
Length = 289
Score = 31.4 bits (72), Expect = 1.4
Identities = 17/108 (15%), Positives = 46/108 (42%), Gaps = 23/108 (21%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIII 115
K++K ++IIII I + + +I +I++ + I + ++
Sbjct: 8 LPLKKAKKLLIIIIGAGIYAFGLNLFLIPNALASGGVTGLSLILLALFGIPPFGLTFFLL 67
Query: 116 IIIIIII----------IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I + I+ ++ II ++++ + + + + ++ IID +
Sbjct: 68 NIPLFILGYKKIGKRFTLLSTIIGVLLLSLFLWLFQRLPVLTIIDPLL 115
Score = 30.2 bits (69), Expect = 3.0
Identities = 9/69 (13%), Positives = 33/69 (47%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
++ + K+ + I++++ I++I ++ + + ++ + + +I I+ +
Sbjct: 143 ILALILNKKFGISVGKILLLVDGFILLIAALVFGPLPNALYTLLSLFVASKVIDIVQEGL 202
Query: 125 IIIIIIIII 133
++III
Sbjct: 203 NSSKVVIII 211
Score = 29.5 bits (67), Expect = 6.1
Identities = 11/68 (16%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----II 143
I++++ I++I ++ + + ++ + + +I I+ + ++III I
Sbjct: 159 ILLLVDGFILLIAALVFGPLPNALYTLLSLFVASKVIDIVQEGLNSSKVVIIISKKEEEI 218
Query: 144 IIIIIIDL 151
+I+ +L
Sbjct: 219 AALILEEL 226
Score = 29.1 bits (66), Expect = 7.1
Identities = 8/53 (15%), Positives = 27/53 (50%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
I++++ I++I ++ + + ++ + + +I I+ + ++III
Sbjct: 159 ILLLVDGFILLIAALVFGPLPNALYTLLSLFVASKVIDIVQEGLNSSKVVIII 211
Score = 29.1 bits (66), Expect = 7.1
Identities = 8/53 (15%), Positives = 27/53 (50%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I++++ I++I ++ + + ++ + + +I I+ + ++III
Sbjct: 159 ILLLVDGFILLIAALVFGPLPNALYTLLSLFVASKVIDIVQEGLNSSKVVIII 211
Score = 29.1 bits (66), Expect = 7.1
Identities = 8/53 (15%), Positives = 27/53 (50%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I++++ I++I ++ + + ++ + + +I I+ + ++III
Sbjct: 159 ILLLVDGFILLIAALVFGPLPNALYTLLSLFVASKVIDIVQEGLNSSKVVIII 211
Score = 29.1 bits (66), Expect = 7.1
Identities = 8/53 (15%), Positives = 27/53 (50%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I++++ I++I ++ + + ++ + + +I I+ + ++III
Sbjct: 159 ILLLVDGFILLIAALVFGPLPNALYTLLSLFVASKVIDIVQEGLNSSKVVIII 211
Score = 29.1 bits (66), Expect = 7.1
Identities = 8/53 (15%), Positives = 27/53 (50%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I++++ I++I ++ + + ++ + + +I I+ + ++III
Sbjct: 159 ILLLVDGFILLIAALVFGPLPNALYTLLSLFVASKVIDIVQEGLNSSKVVIII 211
Score = 29.1 bits (66), Expect = 7.1
Identities = 8/53 (15%), Positives = 27/53 (50%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I++++ I++I ++ + + ++ + + +I I+ + ++III
Sbjct: 159 ILLLVDGFILLIAALVFGPLPNALYTLLSLFVASKVIDIVQEGLNSSKVVIII 211
Score = 29.1 bits (66), Expect = 7.1
Identities = 8/53 (15%), Positives = 27/53 (50%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I++++ I++I ++ + + ++ + + +I I+ + ++III
Sbjct: 159 ILLLVDGFILLIAALVFGPLPNALYTLLSLFVASKVIDIVQEGLNSSKVVIII 211
Score = 29.1 bits (66), Expect = 8.8
Identities = 5/41 (12%), Positives = 22/41 (53%)
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I++++ I++I ++ + + ++ + + +ID++
Sbjct: 159 ILLLVDGFILLIAALVFGPLPNALYTLLSLFVASKVIDIVQ 199
>gnl|CDD|224039 COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid
transport and metabolism].
Length = 431
Score = 31.8 bits (73), Expect = 1.4
Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 64 CMVCEFVRKRS---KYIIIIIIIIIIIIIIII-----IIIIIIIIIIIIIIIIIIIIIII 115
EF K Y +II +I ++ II I + ++ I I I ++++
Sbjct: 298 VACAEFFSKLVPKLSYKTWVIIFTLISFLVANLGLEQIIKISVPVLTAIYPIAIALVLLS 357
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+ + + +++ +II I+ + +I F +L
Sbjct: 358 FARKLWKNSKRVYRLTLLVTLIISILDGLKASGFKMILPNFFQHL 402
>gnl|CDD|220452 pfam09874, DUF2101, Predicted membrane protein (DUF2101). This
domain, found in various archaeal and bacterial
proteins, has no known function.
Length = 206
Score = 31.3 bits (71), Expect = 1.4
Identities = 11/47 (23%), Positives = 29/47 (61%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
+I ++ +II ++ + +I I+I+I+ ++ + + I+I + + DF
Sbjct: 38 LIFLLYLIISLVYVFLISILILILAALLYFLYLRYILIRNREFMIDF 84
>gnl|CDD|200426 TIGR04175, archaeo_artD, archaeosortase D. This model describes
archaeosortase D, one of several strictly archaeal
subfamilies related to exosortase, the bacterial
protein-sorting putative transpeptidase (see TIGR02602).
ArtD is found in the genus Methanocaldococcus. Its
predicted target, encoded by an adjacent gene, has a
C-terminal VPIP motif-containing region (TIGR04173)
likely to be its recognition site.
Length = 150
Score = 30.5 bits (69), Expect = 1.5
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
KY +I + +III I I+ II+II + ++I +I II + +I+ I I+I+
Sbjct: 83 KYKVIYSVFGLIIINISNILRIILIIKYSDMKNYLLIHDLISFIIFPVALILNFIWILIL 142
Query: 135 IIIIII 140
+ +I
Sbjct: 143 KKLNVI 148
>gnl|CDD|226663 COG4200, COG4200, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 239
Score = 31.2 bits (71), Expect = 1.5
Identities = 21/162 (12%), Positives = 50/162 (30%), Gaps = 43/162 (26%)
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII-----III----------IIIIII 111
E+ + + ++I+ ++I I +I I I + +I
Sbjct: 7 VEWRKLKKMLAWLLILFGPLLIGGIGFFNLIQNDRTDSQPWAAIYEQSSSFHGFIFLPVI 66
Query: 112 IIIIIIIII---------------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+ I+I +++ + + + + I++ + +I+ I I + +
Sbjct: 67 LSILIALVLSVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVL 126
Query: 151 LIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCF-HWHFMN 191
+F F + L L P W M
Sbjct: 127 YGGVKSFELAAAFTLLILGLLLA------LPLVALQFWLSMR 162
Score = 30.0 bits (68), Expect = 3.3
Identities = 9/75 (12%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+ + + + I++ + +I+ I I + ++ + + ++I+ +++ + ++ +
Sbjct: 97 VYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVALQ 156
Query: 151 LIFDFTFMYLKEFRV 165
+ M K F V
Sbjct: 157 F---WLSMRFKNFAV 168
>gnl|CDD|224033 COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease
components [Inorganic ion transport and metabolism].
Length = 274
Score = 31.4 bits (72), Expect = 1.5
Identities = 12/115 (10%), Positives = 51/115 (44%), Gaps = 26/115 (22%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIII----IIIIII----------------IIIIIIIIIII 108
V + +I II ++++++++ ++++ ++++++ + I
Sbjct: 130 AVSRSDLLLIAIIGALVLLLLLLFYRELLLLTFDPEFARVLGLNVRLLHYLLLVLLALTI 189
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIDLIFDFTF 157
+ I + +++ ++II ++ ++II ++I ++ ++ L +
Sbjct: 190 VAAIKAVGALLVSALLIIPAATARLLTKSFRQMLIIAVLIGLLSSVLGLYLSYYL 244
Score = 30.2 bits (69), Expect = 3.4
Identities = 16/137 (11%), Positives = 60/137 (43%), Gaps = 48/137 (35%)
Query: 77 IIIIIIIIIIIIIIIII-----------------------IIIIIIIIIIIIIIIIIIII 113
+++I II ++++++++ ++ ++++++ + I+ I
Sbjct: 136 LLLIAIIGALVLLLLLLFYRELLLLTFDPEFARVLGLNVRLLHYLLLVLLALTIVAAIKA 195
Query: 114 IIIIIIIIIIII--------------IIIIIIIIIIIIIIIIIII-----------IIII 148
+ +++ ++II ++II ++I ++ ++ + + I++I
Sbjct: 196 VGALLVSALLIIPAATARLLTKSFRQMLIIAVLIGLLSSVLGLYLSYYLDLPSGPAIVLI 255
Query: 149 IDLIFDFTFMYLKEFRV 165
L+F +F++ + V
Sbjct: 256 AALLFLLSFLFGPKKGV 272
>gnl|CDD|224866 COG1955, FlaJ, Archaeal flagella assembly protein J [Cell motility
and secretion / Intracellular trafficking and
secretion].
Length = 527
Score = 31.5 bits (72), Expect = 1.5
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIII 148
I II I ++ I+++II+II+ I + I ++ + ++++ I I + I
Sbjct: 456 IFSIIPSSSIDLLEILLLIILIILSIANGLAIKVVDGGSKYNSLYYFVLLLWISAISMYI 515
Query: 149 IDLIFDFTF 157
+ +
Sbjct: 516 GPPLVKNSV 524
Score = 29.6 bits (67), Expect = 7.2
Identities = 19/105 (18%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------ 123
Y+ +++ + ++ I+I+ I+ +I+ + ++ + I I+++ +I
Sbjct: 171 YVSLLVSLTFLVAFILILPILYGGNTTLILYLSLLAVFAIEILLLYVIFKALPKDPLWHR 230
Query: 124 --------IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I I + II I + I++I++I + L F T +
Sbjct: 231 LRIKTKEQIKIRRLAIISITLSAIVLILLIYLPKLLFFLPTPFVI 275
>gnl|CDD|112955 pfam04165, DUF401, Protein of unknown function (DUF401). Members
if this family are predicted to have 10 transmembrane
regions.
Length = 386
Score = 31.7 bits (72), Expect = 1.5
Identities = 19/91 (20%), Positives = 45/91 (49%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I +++ + +++++I + + I + I + +I+ ++ + I + + I I++I
Sbjct: 2 ISLLLSLFTVVVVLIWLKKVNIGLSIFVGALILALLSGLGIEGFLWSLYSTISWSTIVLI 61
Query: 144 IIIIIIDLIFDFTFMYLKEFRVEQCPLFLQH 174
+II I I + YLK+ LF +H
Sbjct: 62 LIIAFIMGITEVFIGYLKKMEEGMLHLFPKH 92
>gnl|CDD|147266 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 5, represents the discontinuous cleft
domain that is required to from the central cleft or
channel where the DNA is bound.
Length = 447
Score = 31.5 bits (72), Expect = 1.5
Identities = 13/102 (12%), Positives = 33/102 (32%), Gaps = 5/102 (4%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
K ++++ + III+I +I I ++ +I + + +
Sbjct: 221 DKARVKKQREEKTLLLLKKVTIIIVIYYDDDSESTVIKKDRIWVLAYFVIPEEVAEEVAL 280
Query: 131 IIIIIIIIIIII-----IIIIIIIDLIFDFTFMYLKEFRVEQ 167
IIII + + + + + L + +
Sbjct: 281 AIIIIGKRKSRKRKKNNLGVAKDEKGLEEEELLLLNKILLVI 322
Score = 30.0 bits (68), Expect = 5.0
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 3/91 (3%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ ++++ + III+I +I I ++ +I + +
Sbjct: 220 SDKARVKKQREEKTLLLLKKVTIIIVIYYDDDSESTVIKKDRIWVLAYFVIPEEVAEEVA 279
Query: 132 IIIIIIIIIIIIII---IIIIDLIFDFTFMY 159
+ IIII + +
Sbjct: 280 LAIIIIGKRKSRKRKKNNLGVAKDEKGLEEE 310
Score = 30.0 bits (68), Expect = 5.6
Identities = 15/90 (16%), Positives = 33/90 (36%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ ++++ + III+I +I I ++ +I + + + III
Sbjct: 225 VKKQREEKTLLLLKKVTIIIVIYYDDDSESTVIKKDRIWVLAYFVIPEEVAEEVALAIII 284
Query: 143 IIIIIIIDLIFDFTFMYLKEFRVEQCPLFL 172
I + + E +E+ L L
Sbjct: 285 IGKRKSRKRKKNNLGVAKDEKGLEEEELLL 314
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated.
Length = 417
Score = 31.5 bits (72), Expect = 1.5
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I LI
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLI 230
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
++I I+ + ++ ++ + I I+ I++++ + I +I II + I I +I
Sbjct: 173 LLIFFNIVSNLPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
Score = 29.2 bits (66), Expect = 8.9
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 117
+ + I I+ I++++ + I +I II + I I +I
Sbjct: 188 QSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPLIS 231
>gnl|CDD|220486 pfam09946, DUF2178, Predicted membrane protein (DUF2178). This
domain, found in various hypothetical archaeal proteins,
has no known function.
Length = 111
Score = 29.9 bits (68), Expect = 1.5
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
K + ++I+I+II+ I+ + ++ ++ +I I+ I
Sbjct: 1 KTYRLLLILIVIIMGAIVGWAVSSGNPLVAVLAVIAGILAIYF 43
Score = 28.8 bits (65), Expect = 4.1
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
Y +++I+I+II+ I+ + ++ ++ +I I+ I
Sbjct: 2 TYRLLLILIVIIMGAIVGWAVSSGNPLVAVLAVIAGILAIYF 43
Score = 27.6 bits (62), Expect = 8.4
Identities = 9/45 (20%), Positives = 24/45 (53%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+++I+I+II+ I+ + ++ ++ +I I+ I + D
Sbjct: 5 LLLILIVIIMGAIVGWAVSSGNPLVAVLAVIAGILAIYFLKSRVD 49
>gnl|CDD|225632 COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small
permease component [Carbohydrate transport and
metabolism].
Length = 177
Score = 30.8 bits (70), Expect = 1.5
Identities = 12/83 (14%), Positives = 34/83 (40%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I+ II ++I++ +++I + I + I + + + + I +++ + +
Sbjct: 89 KILRIIADLLILVFFLLLIWGGWKLAAINWSQGSPALGIPMGWVYLALPIGGVLMALRFL 148
Query: 145 IIIIIDLIFDFTFMYLKEFRVEQ 167
+I L + L + E
Sbjct: 149 ERLIRLLRGKKVVLELADEAEEA 171
Score = 30.8 bits (70), Expect = 1.6
Identities = 10/75 (13%), Positives = 35/75 (46%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ R++ I+ II ++I++ +++I + I + I + + + + I
Sbjct: 81 NLLPPRARKILRIIADLLILVFFLLLIWGGWKLAAINWSQGSPALGIPMGWVYLALPIGG 140
Query: 128 IIIIIIIIIIIIIII 142
+++ + + +I ++
Sbjct: 141 VLMALRFLERLIRLL 155
Score = 30.8 bits (70), Expect = 1.7
Identities = 12/89 (13%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
RK I+ II ++I++ +++I + I + I + + + + I
Sbjct: 85 PRARK-----ILRIIADLLILVFFLLLIWGGWKLAAINWSQGSPALGIPMGWVYLALPIG 139
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+++ + + +I ++ ++ + D
Sbjct: 140 GVLMALRFLERLIRLLRGKKVVLELADEA 168
Score = 30.4 bits (69), Expect = 2.2
Identities = 10/77 (12%), Positives = 32/77 (41%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
V I+ II ++I++ +++I + I + I + + + + I
Sbjct: 79 LVNLLPPRARKILRIIADLLILVFFLLLIWGGWKLAAINWSQGSPALGIPMGWVYLALPI 138
Query: 129 IIIIIIIIIIIIIIIII 145
+++ + + +I ++
Sbjct: 139 GGVLMALRFLERLIRLL 155
>gnl|CDD|225272 COG2409, COG2409, Predicted drug exporters of the RND superfamily
[General function prediction only].
Length = 937
Score = 31.6 bits (72), Expect = 1.6
Identities = 12/84 (14%), Positives = 46/84 (54%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+++II + +I II++I++ ++ +++ +++ + + ++I I+ I + ++
Sbjct: 761 LVVIITLCLIFIILLILLRSVVAPAVLVGTVLLSYGAALGLSVLIWQHILGIELHWLVPA 820
Query: 143 IIIIIIIDLIFDFTFMYLKEFRVE 166
+ ++++ + D+ + + R E
Sbjct: 821 LSFVVLLAVGSDYNILLISRLREE 844
Score = 29.3 bits (66), Expect = 9.5
Identities = 9/73 (12%), Positives = 41/73 (56%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ + +++II + +I II++I++ ++ +++ +++ + + ++I I+ I +
Sbjct: 755 LTHDLPLVVIITLCLIFIILLILLRSVVAPAVLVGTVLLSYGAALGLSVLIWQHILGIEL 814
Query: 134 IIIIIIIIIIIII 146
++ + ++++
Sbjct: 815 HWLVPALSFVVLL 827
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 30.4 bits (69), Expect = 1.6
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIII 97
K S ++ ++ +I+++ I +I
Sbjct: 120 KTSSILLPVLYAGLILLLAAGIYFLI 145
Score = 28.5 bits (64), Expect = 7.5
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIII 98
K++ I++ ++ +I+++ I +I
Sbjct: 119 KKTSSILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 78 IIIIIIIIIIIIIIIIIIIIII 99
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 79 IIIIIIIIIIIIIIIIIIIIII 100
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 80 IIIIIIIIIIIIIIIIIIIIII 101
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 81 IIIIIIIIIIIIIIIIIIIIII 102
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 82 IIIIIIIIIIIIIIIIIIIIII 103
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 83 IIIIIIIIIIIIIIIIIIIIII 104
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 84 IIIIIIIIIIIIIIIIIIIIII 105
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 85 IIIIIIIIIIIIIIIIIIIIII 106
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 86 IIIIIIIIIIIIIIIIIIIIII 107
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 87 IIIIIIIIIIIIIIIIIIIIII 108
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 88 IIIIIIIIIIIIIIIIIIIIII 109
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 89 IIIIIIIIIIIIIIIIIIIIII 110
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 90 IIIIIIIIIIIIIIIIIIIIII 111
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 91 IIIIIIIIIIIIIIIIIIIIII 112
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 92 IIIIIIIIIIIIIIIIIIIIII 113
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 93 IIIIIIIIIIIIIIIIIIIIII 114
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 94 IIIIIIIIIIIIIIIIIIIIII 115
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 95 IIIIIIIIIIIIIIIIIIIIII 116
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 96 IIIIIIIIIIIIIIIIIIIIII 117
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 97 IIIIIIIIIIIIIIIIIIIIII 118
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 98 IIIIIIIIIIIIIIIIIIIIII 119
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 99 IIIIIIIIIIIIIIIIIIIIII 120
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 100 IIIIIIIIIIIIIIIIIIIIII 121
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 101 IIIIIIIIIIIIIIIIIIIIII 122
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 102 IIIIIIIIIIIIIIIIIIIIII 123
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 103 IIIIIIIIIIIIIIIIIIIIII 124
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 104 IIIIIIIIIIIIIIIIIIIIII 125
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 105 IIIIIIIIIIIIIIIIIIIIII 126
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 106 IIIIIIIIIIIIIIIIIIIIII 127
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 107 IIIIIIIIIIIIIIIIIIIIII 128
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 108 IIIIIIIIIIIIIIIIIIIIII 129
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 109 IIIIIIIIIIIIIIIIIIIIII 130
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 110 IIIIIIIIIIIIIIIIIIIIII 131
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 111 IIIIIIIIIIIIIIIIIIIIII 132
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 112 IIIIIIIIIIIIIIIIIIIIII 133
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 113 IIIIIIIIIIIIIIIIIIIIII 134
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 114 IIIIIIIIIIIIIIIIIIIIII 135
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 115 IIIIIIIIIIIIIIIIIIIIII 136
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 116 IIIIIIIIIIIIIIIIIIIIII 137
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 117 IIIIIIIIIIIIIIIIIIIIII 138
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 118 IIIIIIIIIIIIIIIIIIIIII 139
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 119 IIIIIIIIIIIIIIIIIIIIII 140
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 120 IIIIIIIIIIIIIIIIIIIIII 141
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 121 IIIIIIIIIIIIIIIIIIIIII 142
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 122 IIIIIIIIIIIIIIIIIIIIII 143
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 123 IIIIIIIIIIIIIIIIIIIIII 144
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 124 IIIIIIIIIIIIIIIIIIIIII 145
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 125 IIIIIIIIIIIIIIIIIIIIII 146
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 126 IIIIIIIIIIIIIIIIIIIIII 147
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 127 IIIIIIIIIIIIIIIIIIIIII 148
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
Score = 28.1 bits (63), Expect = 9.4
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 128 IIIIIIIIIIIIIIIIIIIIII 149
I++ ++ +I+++ I +I
Sbjct: 124 ILLPVLYAGLILLLAAGIYFLI 145
>gnl|CDD|223911 COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].
Length = 1009
Score = 31.8 bits (73), Expect = 1.6
Identities = 21/147 (14%), Positives = 67/147 (45%), Gaps = 25/147 (17%)
Query: 12 ISRLSGTPSI---VCLSSNADLNSMSIS-----ALKCIQSQLRGDLEKVDKILYLQTATK 63
I+RL+G P++ V + A N++ + L +Q+ L ++ I Y T
Sbjct: 269 IARLNGKPAVGLAVKKAPGA--NALDTAKAVKAKLAELQANLPQGVDI--AIPYDTT--- 321
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIII 117
EF++ + +I + I+++++++ + + +I + + + ++ ++
Sbjct: 322 ----EFIKASIEEVIKTLFEAIVLVVLVMYLFLGNLRATLIPALAVPVSLLGTFAVMYAF 377
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ + + +++ I +++ I+++
Sbjct: 378 GFSLNTLTLFALVLAIGLLVDDAIVVV 404
Score = 29.1 bits (66), Expect = 9.2
Identities = 10/60 (16%), Positives = 28/60 (46%)
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQH 174
+I + I+++++++ + + + +I + + + L+ F MY F + LF
Sbjct: 331 VIKTLFEAIVLVVLVMYLFLGNLRATLIPALAVPVSLLGTFAVMYAFGFSLNTLTLFALV 390
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute
carrier 6 subfamily; solute-binding domain. SLC6
proteins (also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter.
Length = 480
Score = 31.3 bits (72), Expect = 1.7
Identities = 9/93 (9%), Positives = 41/93 (44%), Gaps = 19/93 (20%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIIII 122
Y I+++ ++ +I++ + + +I ++ +++ ++I+ +I
Sbjct: 387 YGIVLVGLVEVIVVGWVFGAEKLREHLNAVSDFKVGKWWDFLIKVVTPLVLGYMLILGLI 446
Query: 123 III------IIIIIIIIIIIIIIIIIIIIIIII 149
++ + ++I I+ +I++ +++
Sbjct: 447 GLLTEPYGGYPVWALLIFGWGIVALILVAALLL 479
Score = 29.8 bits (68), Expect = 5.1
Identities = 8/60 (13%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIII 125
K K+ +I ++ +++ ++I+ +I ++ + ++I I+ +I++ +++
Sbjct: 420 KVGKWWDFLIKVVTPLVLGYMLILGLIGLLTEPYGGYPVWALLIFGWGIVALILVAALLL 479
>gnl|CDD|223930 COG0861, TerC, Membrane protein TerC, possibly involved in
tellurium resistance [Inorganic ion transport and
metabolism].
Length = 254
Score = 31.0 bits (71), Expect = 1.7
Identities = 8/81 (9%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 76 YIIIIIIIIIIIIII----IIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
++++ +I I+++ ++ ++ + + ++I++ I + +I+ + I
Sbjct: 163 FVMVTAVIFAILVMRFAAFLLARLLERHPTLKYLALVILLFIGVKLILEGLAHFGFHIPK 222
Query: 128 IIIIIIIIIIIIIIIIIIIII 148
+ + + ++I ++ I
Sbjct: 223 GYLYLAVGFSVLIELLNISAR 243
Score = 30.6 bits (70), Expect = 2.6
Identities = 6/55 (10%), Positives = 25/55 (45%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
++ + + ++I++ I + +I+ + I + + + ++I ++ I
Sbjct: 189 RHPTLKYLALVILLFIGVKLILEGLAHFGFHIPKGYLYLAVGFSVLIELLNISAR 243
Score = 29.1 bits (66), Expect = 7.8
Identities = 6/64 (9%), Positives = 27/64 (42%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ + ++ + + ++I++ I + +I+ + I + + + ++I ++
Sbjct: 180 AFLLARLLERHPTLKYLALVILLFIGVKLILEGLAHFGFHIPKGYLYLAVGFSVLIELLN 239
Query: 134 IIII 137
I
Sbjct: 240 ISAR 243
>gnl|CDD|204382 pfam10031, DUF2273, Small integral membrane protein (DUF2273).
Members of this family of hypothetical bacterial
proteins have no known function.
Length = 51
Score = 28.3 bits (64), Expect = 1.8
Identities = 8/41 (19%), Positives = 22/41 (53%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 112
K+ + II +I +I+ ++I+ I +++++ + I
Sbjct: 5 KKHRGPIIGGLIGLILALLILTIGFWKTLLVLVCTALGYFI 45
>gnl|CDD|237495 PRK13765, PRK13765, ATP-dependent protease Lon; Provisional.
Length = 637
Score = 31.5 bits (72), Expect = 1.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 112
RKR++ ++++III II I I+ II +I +
Sbjct: 116 RKRNQMRNMLMMIIIAGIIGYAFIYAGQILWGIIAAGLIYMA 157
>gnl|CDD|191128 pfam04923, Ninjurin, Ninjurin. Ninjurin (nerve injury-induced
protein) is involved in nerve regeneration and in the
formation and function in some tissues.
Length = 100
Score = 29.4 bits (67), Expect = 1.9
Identities = 9/56 (16%), Positives = 31/56 (55%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
Y ++ ++ I I++ +++ I++++I + I + I++ +I ++ ++I
Sbjct: 41 YYFLLTLLSISIVLQVVVGILLLLISRLNINKRKADRLNNAATILVFLITVVNVLI 96
Score = 29.0 bits (66), Expect = 2.7
Identities = 9/63 (14%), Positives = 33/63 (52%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
V + + ++ ++ I I++ +++ I++++I + I + I++ +I ++
Sbjct: 34 VGEEHSFYYFLLTLLSISIVLQVVVGILLLLISRLNINKRKADRLNNAATILVFLITVVN 93
Query: 130 III 132
++I
Sbjct: 94 VLI 96
>gnl|CDD|224104 COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].
Length = 234
Score = 30.7 bits (70), Expect = 1.9
Identities = 8/80 (10%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 85 IIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ +++ I++++ I+++ + ++ +++++ I+++ ++ +++I+ +++
Sbjct: 152 LATVLLSGILLLLSILMVSNIPFPSLKKLNALVRVVLLLAGILLLALLALVLILYPWLLL 211
Query: 135 IIIIIIIIIIIIIIIDLIFD 154
++I ++ I I + F
Sbjct: 212 LVIASGYLLSIPIRVRQWFK 231
>gnl|CDD|201325 pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation
complex. SecE is part of the SecYEG complex in bacteria
which translocates proteins from the cytoplasm. In
eukaryotes the complex, made from Sec61-gamma and
Sec61-alpha translocates protein from the cytoplasm to
the ER. Archaea have a similar complex.
Length = 56
Score = 28.2 bits (64), Expect = 1.9
Identities = 3/25 (12%), Positives = 18/25 (72%)
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIF 153
+ +++++ ++++ + + ++DL+F
Sbjct: 25 LKTTVVVLVFVLVMALFLWLVDLVF 49
>gnl|CDD|227151 COG4814, COG4814, Uncharacterized protein with an alpha/beta
hydrolase fold [General function prediction only].
Length = 288
Score = 30.9 bits (70), Expect = 1.9
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIII 98
K I+I++ +I+ II I
Sbjct: 3 KVFFSIVILLAGALILGWIIGIFE 26
Score = 29.4 bits (66), Expect = 6.2
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIII 99
K + I+I++ +I+ II I
Sbjct: 2 KKVFFSIVILLAGALILGWIIGIFE 26
Score = 29.0 bits (65), Expect = 9.4
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 126 IIIIIIIIIIIIIIIIIIIIIIIID 150
+ I+I++ +I+ II I +
Sbjct: 4 VFFSIVILLAGALILGWIIGIFEVT 28
>gnl|CDD|237708 PRK14418, PRK14418, membrane protein; Provisional.
Length = 236
Score = 30.9 bits (70), Expect = 2.0
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 119
II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.8 bits (67), Expect = 3.8
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF---TFM 158
+II I II+ +I II +++I I I+ + +I +++ + I + +
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWIPWMSQGPLGYWTYAVE 185
Query: 159 YLKEFRVEQCPLFL 172
Y F ++
Sbjct: 186 YTNSFTTLVGYWYV 199
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
Score = 29.4 bits (66), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+II I II+ +I II +++I I I+ + +I +++ + I
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWI 169
>gnl|CDD|224194 COG1275, TehA, Tellurite resistance protein and related permeases
[Inorganic ion transport and metabolism].
Length = 329
Score = 31.1 bits (71), Expect = 2.1
Identities = 7/86 (8%), Positives = 27/86 (31%), Gaps = 8/86 (9%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIII 127
Y++ + + + I + + + II+ + +++ +
Sbjct: 107 YVLWWFGVALQLFFSAWFIYSLFRGKKFELETITPSWFLPPVGIIVASLTASVLLGAYFV 166
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIF 153
I + +++ I++ L
Sbjct: 167 IGYVFFGAGFFSYLVLFPIVLYRLFT 192
>gnl|CDD|151203 pfam10710, DUF2512, Protein of unknown function (DUF2512).
Proteins in this family are predicted to be integral
membrane proteins, and many of them are annotated as
being YndM protein. They are all found in Firmicutes.
The true function is not known.
Length = 136
Score = 30.0 bits (68), Expect = 2.2
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 131 IIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+ ++I I+ + ++ I++ L F +F
Sbjct: 4 VKALLIKFIMTLAVLYIVLGLFFGVSFG 31
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA.
During the bacterial cell cycle, the tubulin-like
cell-division protein FtsZ polymerises into a ring
structure that establishes the location of the nascent
division site. EzrA modulates the frequency and
position of FtsZ ring formation.
Length = 559
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 77 IIIIIIIIIIIIIIIIIII 95
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 78 IIIIIIIIIIIIIIIIIII 96
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 79 IIIIIIIIIIIIIIIIIII 97
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 80 IIIIIIIIIIIIIIIIIII 98
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 81 IIIIIIIIIIIIIIIIIII 99
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 82 IIIIIIIIIIIIIIIIIII 100
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 83 IIIIIIIIIIIIIIIIIII 101
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 84 IIIIIIIIIIIIIIIIIII 102
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 85 IIIIIIIIIIIIIIIIIII 103
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 86 IIIIIIIIIIIIIIIIIII 104
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 87 IIIIIIIIIIIIIIIIIII 105
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 88 IIIIIIIIIIIIIIIIIII 106
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 89 IIIIIIIIIIIIIIIIIII 107
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 90 IIIIIIIIIIIIIIIIIII 108
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 91 IIIIIIIIIIIIIIIIIII 109
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 92 IIIIIIIIIIIIIIIIIII 110
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 93 IIIIIIIIIIIIIIIIIII 111
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 94 IIIIIIIIIIIIIIIIIII 112
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 95 IIIIIIIIIIIIIIIIIII 113
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 96 IIIIIIIIIIIIIIIIIII 114
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 97 IIIIIIIIIIIIIIIIIII 115
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 98 IIIIIIIIIIIIIIIIIII 116
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 99 IIIIIIIIIIIIIIIIIII 117
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 100 IIIIIIIIIIIIIIIIIII 118
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 101 IIIIIIIIIIIIIIIIIII 119
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 102 IIIIIIIIIIIIIIIIIII 120
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 103 IIIIIIIIIIIIIIIIIII 121
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 104 IIIIIIIIIIIIIIIIIII 122
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 105 IIIIIIIIIIIIIIIIIII 123
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 106 IIIIIIIIIIIIIIIIIII 124
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 107 IIIIIIIIIIIIIIIIIII 125
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 108 IIIIIIIIIIIIIIIIIII 126
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 109 IIIIIIIIIIIIIIIIIII 127
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 110 IIIIIIIIIIIIIIIIIII 128
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 111 IIIIIIIIIIIIIIIIIII 129
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 112 IIIIIIIIIIIIIIIIIII 130
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 113 IIIIIIIIIIIIIIIIIII 131
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 114 IIIIIIIIIIIIIIIIIII 132
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 115 IIIIIIIIIIIIIIIIIII 133
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 116 IIIIIIIIIIIIIIIIIII 134
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 IIIIIIIIIIIIIIIIIII 135
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 118 IIIIIIIIIIIIIIIIIII 136
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 119 IIIIIIIIIIIIIIIIIII 137
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 120 IIIIIIIIIIIIIIIIIII 138
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 121 IIIIIIIIIIIIIIIIIII 139
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 122 IIIIIIIIIIIIIIIIIII 140
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 123 IIIIIIIIIIIIIIIIIII 141
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 124 IIIIIIIIIIIIIIIIIII 142
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 125 IIIIIIIIIIIIIIIIIII 143
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 126 IIIIIIIIIIIIIIIIIII 144
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 127 IIIIIIIIIIIIIIIIIII 145
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 128 IIIIIIIIIIIIIIIIIII 146
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 129 IIIIIIIIIIIIIIIIIII 147
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 130 IIIIIIIIIIIIIIIIIII 148
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 31.0 bits (71), Expect = 2.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 131 IIIIIIIIIIIIIIIIIII 149
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 29.8 bits (68), Expect = 5.4
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 76 YIIIIIIIIIIIIIIIIII 94
II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
>gnl|CDD|177084 CHL00182, tatC, Sec-independent translocase component C;
Provisional.
Length = 249
Score = 30.7 bits (70), Expect = 2.2
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 20/110 (18%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIII 114
E +R+R + I++++ I+ I + I+ I+ I I
Sbjct: 27 HLEELRQRLFLSLSILLLLTIVCFINVKSIVEILQAPAKGIKFLQLSPGEYFFSSIKISF 86
Query: 115 IIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIDLIFDF 155
++I II II+ I+ II+ ++I +++ + LIF +
Sbjct: 87 YTGLLISSPFIIYQIILFILPGLTKKERKIILPLLISSLVLFGLGLIFAY 136
>gnl|CDD|217936 pfam04161, Arv1, Arv1-like family. Arv1 is a transmembrane protein
with potential zinc-binding motifs. ARV1 is a novel
mediator of eukaryotic sterol homeostasis.
Length = 194
Score = 30.3 bits (69), Expect = 2.3
Identities = 11/82 (13%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIII 123
+Y+ + +++ +++ I I++ ++ I++ +++ + I+++I
Sbjct: 110 QYLFFLAYLLLENVLLHISTAILLRKLLKWGKGLRYRTLILLYTVLLSYYGKLFPILMLI 169
Query: 124 IIIIIIIIIIIIIIIIIIIIII 145
+I + II +I+++ I
Sbjct: 170 WPYDTTLISMSIIDLIVLLSNI 191
>gnl|CDD|144140 pfam00434, VP7, Glycoprotein VP7.
Length = 326
Score = 30.9 bits (70), Expect = 2.3
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
+Y I+ +I II++ I+ I I+ II +++I+++
Sbjct: 5 EYTTILTFLISIILLNYILKTITRIMDYIIYRFLLVIVVLSPFS 48
>gnl|CDD|205334 pfam13153, DUF3985, Protein of unknown function (DUF3985). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 50 amino acids in length.
Length = 44
Score = 27.7 bits (62), Expect = 2.3
Identities = 10/37 (27%), Positives = 26/37 (70%)
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
I+ II+I+++I ++ + + + I+ I++II +I++
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIVEF 39
Score = 27.3 bits (61), Expect = 3.0
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
I+ II+I+++I ++ + + + I+ I++II LI +F
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIVEF 39
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 111
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 112
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 113
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 115
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 117
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 119
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
I+ II+I+++I ++ + + + I+ I++II +I+
Sbjct: 3 ILTIILIVLLIYVVFKVAYVALKILAILLIIFLIV 37
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 438
Score = 30.9 bits (71), Expect = 2.3
Identities = 17/124 (13%), Positives = 43/124 (34%), Gaps = 33/124 (26%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIII 123
KR + I +++ + + +++ + I+ + II + +++I I++
Sbjct: 303 AYKRVLKSLKIGLLVSLAVALLLALFREPILGLFTDDPEIIALGKTLLLISILLEPGRAF 362
Query: 124 IIIII------------IIIIIIIIIII---------------IIIIIIIIIIDLIFDFT 156
I++I ++I II + I ++ + I D
Sbjct: 363 NIVLIGSLRAAGDARFPVLIGIISMWGISVPLAYLLGIVLGLGLLGVWIAFAADEWVRGI 422
Query: 157 FMYL 160
M
Sbjct: 423 IMLW 426
>gnl|CDD|226078 COG3548, COG3548, Predicted integral membrane protein [Function
unknown].
Length = 197
Score = 30.4 bits (69), Expect = 2.3
Identities = 11/79 (13%), Positives = 39/79 (49%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ ++ ++ ++++++I +++ I ++ +I++ +I I +I
Sbjct: 110 TDFLPALLYLVLLLLIAFAYLLMSWQYIKDNGHKSARERAQTLLRKMILLAALISAIALI 169
Query: 134 IIIIIIIIIIIIIIIIDLI 152
+ +II ++ + + +I LI
Sbjct: 170 LYLIIPLLYVAALALIFLI 188
Score = 29.6 bits (67), Expect = 4.3
Identities = 12/78 (15%), Positives = 39/78 (50%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++ ++++++I +++ I ++ +I++ +I I +I+ +II
Sbjct: 116 LLYLVLLLLIAFAYLLMSWQYIKDNGHKSARERAQTLLRKMILLAALISAIALILYLIIP 175
Query: 137 IIIIIIIIIIIIIDLIFD 154
++ + + +I +I L+ D
Sbjct: 176 LLYVAALALIFLIRLVAD 193
>gnl|CDD|177231 MTH00180, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 99
Score = 29.2 bits (66), Expect = 2.3
Identities = 15/65 (23%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 74 SKYIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+Y+ + II+ I+ ++ I++ +II+++ I ++++ I ++ +I + I +I I I
Sbjct: 3 YEYLTVGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTI 62
Query: 130 IIIII 134
+I+ +
Sbjct: 63 MILTV 67
Score = 28.5 bits (64), Expect = 3.4
Identities = 15/65 (23%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 76 YIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
Y + + II+ I+ ++ I++ +II+++ I ++++ I ++ +I + I +I I I
Sbjct: 3 YEYLTVGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTI 62
Query: 132 IIIII 136
+I+ +
Sbjct: 63 MILTV 67
Score = 27.7 bits (62), Expect = 6.5
Identities = 15/66 (22%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 76 YIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
Y + + II+ I+ ++ I++ +II+++ I ++++ I ++ +I + I +I I
Sbjct: 2 YYEYLTVGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFT 61
Query: 132 IIIIII 137
I+I+ +
Sbjct: 62 IMILTV 67
>gnl|CDD|220626 pfam10192, GpcrRhopsn4, Rhodopsin-like GPCR transmembrane domain.
This region of 270 amino acids is the seven
transmembrane alpha-helical domains included within five
GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor
(GPCR) protein, conserved from nematodes to humans.
GPCRs are integral membrane receptors whose
intracellular actions are mediated by signalling
pathways involving G proteins and downstream secondary
messengers.
Length = 256
Score = 30.7 bits (70), Expect = 2.4
Identities = 16/89 (17%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIII 131
I+ + ++ II+++ II I + ++ ++ + +++ +I +++++I +I+
Sbjct: 27 GILELFFFFFLLYIILLVYNIIFIQALKKRGLKHPVLKLLSVSLLLELISLLLLLIHLIV 86
Query: 132 IIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I I + I+ I+D+ F+ L
Sbjct: 87 YAYNGIGIPLFQILGEILDIASQILFLLL 115
Score = 29.1 bits (66), Expect = 7.5
Identities = 19/123 (15%), Positives = 57/123 (46%), Gaps = 44/123 (35%)
Query: 76 YIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIII---------- 117
YII+++ II I + ++ ++ + +++ +I +++++I +I+
Sbjct: 39 YIILLVYNIIFIQALKKRGLKHPVLKLLSVSLLLELISLLLLLIHLIVYAYNGIGIPLFQ 98
Query: 118 -----------IIIIIIIIII---------------IIIIIIIIIIIIIIIIIIIIIIDL 151
I+ +++++++ +I++ II++I++ +I++I I
Sbjct: 99 ILGEILDIASQILFLLLLLLLAKGWTITRAKLSSNTVILLPIIVLIVVFQVILVIWYIKY 158
Query: 152 IFD 154
FD
Sbjct: 159 FFD 161
>gnl|CDD|218654 pfam05605, Di19, Drought induced 19 protein (Di19). This family
consists of several drought induced 19 (Di19) like
proteins. Di19 has been found to be strongly expressed
in both the roots and leaves of Arabidopsis thaliana
during progressive drought. The precise function of Di19
is unknown.
Length = 209
Score = 30.5 bits (69), Expect = 2.4
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 620 KLQRKQALLQTVLNSTNS--GSHHFGGPLESIVGGTSALSSNNFSPTTSSP-LSHFLSSR 676
K+QR++ L + +S S G L+S++G + SS+N S + P LS F+ S
Sbjct: 89 KMQRRRRLRRGGSSSALSLLKRELRDGNLQSLLGSSCMSSSSNASDSAPDPLLSSFICSS 148
Query: 677 PPAPGFGTTADNLNQLDSNTNVF 699
P A T+ + + S +
Sbjct: 149 PSADTSSTSKSDSSTEGSASAKS 171
>gnl|CDD|130471 TIGR01404, FlhB_rel_III, type III secretion protein, YscU/HrpY
family. This model represents one of several families
of proteins related to bacterial flagellar biosynthesis
proteins and involved in bacterial type III protein
secretion systems. This family is homologous to, but
distinguished from, flagellar biosynthetic protein FlhB
(TIGRFAMs model TIGR00328). This model may not identify
all type III secretion system FlhB homologs [Protein
fate, Protein and peptide secretion and trafficking,
Cellular processes, Pathogenesis].
Length = 342
Score = 30.7 bits (70), Expect = 2.4
Identities = 7/75 (9%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
I+ ++ + +I + + + + + + + I+ ++ ++I++ + +++ + D
Sbjct: 142 ILKLVALALIFYLFLKNYLKELFALPYCGLDGLAPIVGELLKLLILVCLGFFLVVGLADF 201
Query: 152 IFDFTFMYLKEFRVE 166
F ++++K+ ++
Sbjct: 202 AFQR-YLFMKDLKMS 215
>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 573
Score = 30.9 bits (71), Expect = 2.4
Identities = 7/70 (10%), Positives = 31/70 (44%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
++ +I+++ + I ++ +I +I + + ++ + +I++ + + +
Sbjct: 418 FMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSL 477
Query: 154 DFTFMYLKEF 163
+ LK +
Sbjct: 478 SYNLKSLKNY 487
Score = 30.1 bits (69), Expect = 4.4
Identities = 7/75 (9%), Positives = 32/75 (42%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++ +I+++ + I ++ +I +I + + ++ + +I++ + + ++ +
Sbjct: 418 FMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSL 477
Query: 149 IDLIFDFTFMYLKEF 163
+ L F
Sbjct: 478 SYNLKSLKNYKLSSF 492
Score = 29.3 bits (67), Expect = 8.9
Identities = 9/105 (8%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
Query: 63 KCMVCEFVRKRSKYIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIII 116
+ SK+++ +I+++ + I +I +I + + ++ + +I++
Sbjct: 405 NLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILL 464
Query: 117 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
+ + ++ + + + + + + + F T+
Sbjct: 465 GGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISY 509
Score = 29.3 bits (67), Expect = 9.3
Identities = 4/42 (9%), Positives = 21/42 (50%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 115
+ + + + +I + + I ++ ++ +II++++ +
Sbjct: 532 GQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573
>gnl|CDD|235862 PRK06803, flgE, flagellar hook protein FlgE; Validated.
Length = 402
Score = 30.9 bits (70), Expect = 2.4
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 451 PLDGTPGSG-LSDILAGGLPNSNLD---EALLLMQQQQ 484
P+ GTPG+G L + +G L SN+D E + LM Q+
Sbjct: 342 PILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQR 379
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes
play an important role in the degradation of both lipids
and cellular proteins. In order to perform this
degradative function, vacuoles/lysosomes contain
numerous hydrolases which have been transported in the
form of inactive precursors via the biosynthetic pathway
and are proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or Golgi
complex, or remain in the limiting membrane of the MVB
and are thereby transported to the limiting membrane of
the vacuole/lysosome as a consequence of fusion.
Therefore, the MVB sorting pathway plays a critical role
in the decision between recycling and degradation of
membrane proteins. A few archaeal sequences are also
present within this family.
Length = 169
Score = 29.9 bits (68), Expect = 2.4
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 1 ALNQVKQYEKEISRLSGTPS--------IVCLSSNAD-LNSM--SISALKCIQSQLRGDL 49
L Q K+YEK++ +L G + I +N + LN+M A+K + + D+
Sbjct: 46 LLKQKKRYEKQLDQLDGQLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKAMNKNM--DI 103
Query: 50 EKVDKIL 56
+K+D ++
Sbjct: 104 DKIDDLM 110
>gnl|CDD|213562 TIGR00810, secG, protein translocase, SecG subunit. This family
of proteins forms a complex with SecY and SecE. SecA
then recruits the SecYEG complex to form an active
protein translocation channel [Protein fate, Protein
and peptide secretion and trafficking].
Length = 73
Score = 28.3 bits (64), Expect = 2.4
Identities = 5/21 (23%), Positives = 17/21 (80%)
Query: 76 YIIIIIIIIIIIIIIIIIIII 96
Y +++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 77 IIIIIIIIIIIIIIIIIIIII 97
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 78 IIIIIIIIIIIIIIIIIIIII 98
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 79 IIIIIIIIIIIIIIIIIIIII 99
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 80 IIIIIIIIIIIIIIIIIIIII 100
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 81 IIIIIIIIIIIIIIIIIIIII 101
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 82 IIIIIIIIIIIIIIIIIIIII 102
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 83 IIIIIIIIIIIIIIIIIIIII 103
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 84 IIIIIIIIIIIIIIIIIIIII 104
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 85 IIIIIIIIIIIIIIIIIIIII 105
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 86 IIIIIIIIIIIIIIIIIIIII 106
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 87 IIIIIIIIIIIIIIIIIIIII 107
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 88 IIIIIIIIIIIIIIIIIIIII 108
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 89 IIIIIIIIIIIIIIIIIIIII 109
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 90 IIIIIIIIIIIIIIIIIIIII 110
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 91 IIIIIIIIIIIIIIIIIIIII 111
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 92 IIIIIIIIIIIIIIIIIIIII 112
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 93 IIIIIIIIIIIIIIIIIIIII 113
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 94 IIIIIIIIIIIIIIIIIIIII 114
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 95 IIIIIIIIIIIIIIIIIIIII 115
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 96 IIIIIIIIIIIIIIIIIIIII 116
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 97 IIIIIIIIIIIIIIIIIIIII 117
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 98 IIIIIIIIIIIIIIIIIIIII 118
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 99 IIIIIIIIIIIIIIIIIIIII 119
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 100 IIIIIIIIIIIIIIIIIIIII 120
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 101 IIIIIIIIIIIIIIIIIIIII 121
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 102 IIIIIIIIIIIIIIIIIIIII 122
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 103 IIIIIIIIIIIIIIIIIIIII 123
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 104 IIIIIIIIIIIIIIIIIIIII 124
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 105 IIIIIIIIIIIIIIIIIIIII 125
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 106 IIIIIIIIIIIIIIIIIIIII 126
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 107 IIIIIIIIIIIIIIIIIIIII 127
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 108 IIIIIIIIIIIIIIIIIIIII 128
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 109 IIIIIIIIIIIIIIIIIIIII 129
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 110 IIIIIIIIIIIIIIIIIIIII 130
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 111 IIIIIIIIIIIIIIIIIIIII 131
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 112 IIIIIIIIIIIIIIIIIIIII 132
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 113 IIIIIIIIIIIIIIIIIIIII 133
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 114 IIIIIIIIIIIIIIIIIIIII 134
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 115 IIIIIIIIIIIIIIIIIIIII 135
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 116 IIIIIIIIIIIIIIIIIIIII 136
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 117 IIIIIIIIIIIIIIIIIIIII 137
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 118 IIIIIIIIIIIIIIIIIIIII 138
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 119 IIIIIIIIIIIIIIIIIIIII 139
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 120 IIIIIIIIIIIIIIIIIIIII 140
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 121 IIIIIIIIIIIIIIIIIIIII 141
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 122 IIIIIIIIIIIIIIIIIIIII 142
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 123 IIIIIIIIIIIIIIIIIIIII 143
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 124 IIIIIIIIIIIIIIIIIIIII 144
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 125 IIIIIIIIIIIIIIIIIIIII 145
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 126 IIIIIIIIIIIIIIIIIIIII 146
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 127 IIIIIIIIIIIIIIIIIIIII 147
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 128 IIIIIIIIIIIIIIIIIIIII 148
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 129 IIIIIIIIIIIIIIIIIIIII 149
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
>gnl|CDD|151190 pfam10694, DUF2500, Protein of unknown function (DUF2500). The
members of this family are largely confined to the
Gammaproteobacteria. The function is not known.
Length = 107
Score = 29.1 bits (66), Expect = 2.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 138 IIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPL 170
+ I++II II IF F K + E P
Sbjct: 2 LFFILVIIAIIGLAIFVFVRQIRKWIKNENAPE 34
>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family.
Length = 259
Score = 30.6 bits (69), Expect = 2.5
Identities = 7/108 (6%), Positives = 49/108 (45%), Gaps = 23/108 (21%)
Query: 70 VRKRSKYIIIIIIIIIIIII--------IIIIIIIIIIIII---------------IIII 106
+ R ++ + ++++ +++ +++ ++ +++ ++ +++
Sbjct: 67 ISPREALLLGLALLLLGLLLALLLGPLLLLLGLLGLLLGLLYSPPLRLKRRPLLGELVVG 126
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+ ++I++ + I ++++ + + ++ + I++ I D+ D
Sbjct: 127 LAFGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEGD 174
>gnl|CDD|119320 cd06574, TM_PBP1_branched-chain-AA_like, Transmembrane subunit (TM)
of Periplasmic Binding Protein (PBP)-dependent
ATP-Binding Cassette (ABC) transporters which are
involved in the uptake of branched-chain amino acids
(AAs), as well as TMs of transporters involved in the
uptake of monosaccharides including ribose, galactose,
and arabinose. These transporters generally bind type 1
PBPs. PBP-dependent ABC transporters consist of a PBP,
two TMs, and two cytoplasmic ABCs, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. This group includes Escherichia coli LivM and
LivH, two TMs which heterodimerize to form the
translocation pathway of the E. coli branched-chain AA
LIV-1/LS transporter. This transporter is comprised of
two TMs (LivM and LivH), two ABCs (LivG and LivF), and
one of two alternative PBPs, LivJ (LIV-BP) and LivK
(LS-BP). In addition to transporting branched-chain AAs
including leucine, isoleucine and valine, the E. coli
LIV-1/LS transporter is involved in the uptake of the
aromatic AA, phenylalanine. Included in this group are
proteins from transport systems that contain a single TM
which homodimerizes to generate the transmembrane pore;
for example E. coli RbsC, AlsC, and MglC, the TMs of the
high affinity ribose transporter, the D-allose
transporter and the galactose transporter, respectively.
The D-allose transporter may also to be involved in low
affinity ribose transport.
Length = 266
Score = 30.7 bits (70), Expect = 2.5
Identities = 11/72 (15%), Positives = 39/72 (54%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
R + ++ I+I+I + I + I+ I + ++ ++++ I + I +++++
Sbjct: 69 TRLKINGLLAGILIMIGLYSINLRIMGGPNIPLGTRDTLLGLLLLFGISGTLSIPVVLLL 128
Query: 130 IIIIIIIIIIII 141
I+++++ ++I
Sbjct: 129 IVLLVLFLVIWF 140
>gnl|CDD|151331 pfam10882, DUF2679, Protein of unknown function (DUF2679). This
family of proteins with unknown function appear to be
restricted to Clostridium spp.
Length = 286
Score = 30.9 bits (70), Expect = 2.5
Identities = 11/67 (16%), Positives = 36/67 (53%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+III+ + I +++I+++++I ++ ++ + +I + I + I++ + + D
Sbjct: 4 VIIILGYTLGINLLLILLMLLINSYEVLNLLKVSLIFLNIYQLYYILLSLSLKYRIDEEN 63
Query: 158 MYLKEFR 164
+Y+
Sbjct: 64 LYINWIF 70
Score = 29.3 bits (66), Expect = 5.8
Identities = 11/57 (19%), Positives = 34/57 (59%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+III+ + I +++I+++++I ++ ++ + +I + I + I++ + + ID
Sbjct: 4 VIIILGYTLGINLLLILLMLLINSYEVLNLLKVSLIFLNIYQLYYILLSLSLKYRID 60
>gnl|CDD|237199 PRK12772, PRK12772, bifunctional flagellar biosynthesis protein
FliR/FlhB; Provisional.
Length = 609
Score = 31.2 bits (71), Expect = 2.5
Identities = 18/89 (20%), Positives = 43/89 (48%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
I+ +I + I I I I I I++II+I + + +I + + I+I+ + I I++ +
Sbjct: 165 IMHVINVFIQYFYIGIKIAIPIVLIILITDLTLGLISRTVPQLNIMILGLPIKILVGLTA 224
Query: 137 IIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
+I + + + +I + ++
Sbjct: 225 FVIALPLFLKVISSAFSNLPDAIRGFYKA 253
Score = 30.8 bits (70), Expect = 2.7
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
+ II I+ I+ + + I+ + + + II + ++I I I +I+III + D
Sbjct: 406 LTIITIVGIVGYKFLQDNYLDILNLGNLYLPYIITELKSLVISIFFRITLIMIIIAVADY 465
Query: 152 IFDFTFMYLKEFR 164
++ + Y K+ R
Sbjct: 466 VYQK-YQYNKDLR 477
Score = 29.6 bits (67), Expect = 6.2
Identities = 19/79 (24%), Positives = 42/79 (53%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
F+ + S +I + I I I I I I++II+I + + +I + + I+I+ + I I
Sbjct: 159 FLNQESIMHVINVFIQYFYIGIKIAIPIVLIILITDLTLGLISRTVPQLNIMILGLPIKI 218
Query: 129 IIIIIIIIIIIIIIIIIII 147
++ + +I + + + +I
Sbjct: 219 LVGLTAFVIALPLFLKVIS 237
>gnl|CDD|224219 COG1300, SpoIIM, Uncharacterized membrane protein [Function
unknown].
Length = 207
Score = 30.4 bits (69), Expect = 2.6
Identities = 9/110 (8%), Positives = 34/110 (30%), Gaps = 20/110 (18%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------------------II 107
E R + + + I ++++ ++ I I+
Sbjct: 8 ERDLWRYTAVALALFIFLLLLGGFLVGTFPGYIYSILPPELAYYVDDEFRRQLSGGGSAS 67
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+ + I + + + ++ I + + + I++++ I+
Sbjct: 68 SPPLFALSIFLNNLKVALLAIAGGLTLGLPTILVLLFNGFIVGFFVGLVA 117
>gnl|CDD|227481 COG5152, COG5152, Uncharacterized conserved protein, contains RING
and CCCH-type Zn-fingers [General function prediction
only].
Length = 259
Score = 30.4 bits (68), Expect = 2.7
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 189 FMNQRRRRPVRKRDGS-FNYSPDTYCTKYDETTGLCPDGDECPFLH 233
+ ++ +P RDG + PD C Y ET G C GD C FLH
Sbjct: 120 RLTKQINQPTMFRDGEVIDTQPDV-CKDYKET-GYCGYGDSCKFLH 163
>gnl|CDD|193572 cd09848, M28_TfR, M28 Zn-peptidase Transferrin Receptor family.
Peptidase M28 family; Transferrin Receptor (TfR)
subfamily. TfRs are homodimeric type II transmembrane
proteins containing three distinct domains:
protease-like, apical or protease-associated (PA), and
helical domains. The protease-like domain is a large
extracellular portion (ectodomain). In TfR, it contains
a binding site for the transferrin molecule and has 28%
identity to membrane glutamate carboxypeptidase II
(mGCP-II or PSMA). The PA domain is inserted between
the first and second strands of the central beta sheet
in the protease-like domain. TfR1 is widely expressed,
and is a key player in the uptake of iron-loaded
transferrin (Tf) into cells. The TfR1 homodimer binds
two molecules of Tf and the complex is then
internalized. TfR1 may also participate in cell growth
and proliferation. TfR2 binds Tf but with a
significantly lower affinity than TfR1. It is expressed
chiefly in hepatocytes, hematopoietic cells, and
duodenal crypt cells; its expression overlaps with that
of hereditary hemochromatosis protein (HFE). TfR2 is
involved in iron homeostasis; in humans, mutations in
TfR2 are associated with a form of hemochromatosis
(HFE3). While related in sequence to peptidase M28
glutamate carboxypeptidase II (also called
prostate-specific membrane antigen or PSMA), TfR lacks
the metal ion coordination centers and protease activity
of that group.
Length = 285
Score = 30.5 bits (69), Expect = 2.7
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 671 HFLSSRPPAPGFGTTADNLNQLDSNTNVFINHISQ 705
HF P GT D LD TN +N +++
Sbjct: 229 HFTEDDEDYPYLGTKLDTKENLDKVTNGRLNAVAR 263
>gnl|CDD|219504 pfam07667, DUF1600, Protein of unknown function (DUF1600). These
proteins appear to be specific to Mycoplasma species.
Length = 115
Score = 29.2 bits (66), Expect = 2.8
Identities = 16/79 (20%), Positives = 34/79 (43%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
K K+++ +I +I + +I I ++ + + II ++ I + I
Sbjct: 33 NKLKKFLLKAMIYPLIYGLYLITIPFLLYLTDNGSTYSVYGIITNTKYNPLVAIPVFAAI 92
Query: 131 IIIIIIIIIIIIIIIIIII 149
++I + III I I +
Sbjct: 93 LLIYFPLSYIIIYIKWIGL 111
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2.
Members of this family are restricted to the Firmicutes
lineage (low-GC Gram-positive bacteria) and appear to be
paralogous to, and much more divergent than, the
preprotein translocase SecY. Members include the SecY2
protein of the accessory Sec system in Streptococcus
gordonii, involved in export of the highly glycosylated
platelet-binding protein GspB [Protein fate, Protein and
peptide secretion and trafficking].
Length = 395
Score = 30.9 bits (70), Expect = 2.8
Identities = 17/118 (14%), Positives = 51/118 (43%), Gaps = 21/118 (17%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIII------- 115
++ + + +II II + II +++ +I++ +++ +
Sbjct: 91 EQQYRERFLTLIIAIIQGLAIIHSFTNKNGLSDFNMLLATLILVTGTCLLVWLADLNAKY 150
Query: 116 -----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF--TFMYLKEFRVE 166
+ I+++ ++ I + + + I +I ++I++ L+ F F+ E+R+
Sbjct: 151 GIGGSMPIVLVSMLKNIPSNVFELFQMSYIWLIALLILLTLVALFLLAFIERAEYRIP 208
>gnl|CDD|109985 pfam00950, ABC-3, ABC 3 transport family.
Length = 258
Score = 30.3 bits (69), Expect = 3.0
Identities = 15/109 (13%), Positives = 48/109 (44%), Gaps = 28/109 (25%)
Query: 77 IIIIIIIIIIIIIIIIII------------------IIIIIIIIIIIIIIIIIIIIIIII 118
+I I II II++++++ + + + ++++I++ + I++ +
Sbjct: 127 LIQIAIITAIILLLLLLFWKELLLITFDPDHAKVIGLPVQFLYLLLLILLALTIVVAMQA 186
Query: 119 IIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIIDLIFDFTF 157
+ I++I ++I +++I I ++ + L+ + F
Sbjct: 187 VGAILVIALLITPAATARLLTRSFESMMLIASAIGMVSSVAGLLLSYYF 235
>gnl|CDD|227656 COG5353, COG5353, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 161
Score = 29.8 bits (67), Expect = 3.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIII 94
R K++IIIIII++I + II+ I
Sbjct: 1 MRKKHLIIIIIILVIFLAIILSI 23
>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown].
Length = 578
Score = 30.9 bits (70), Expect = 3.1
Identities = 14/112 (12%), Positives = 47/112 (41%), Gaps = 17/112 (15%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIII-----------------IIIIIIIIIIIIIIIII 111
+ K I I + + ++ I+ I++ +I++ I+ I +
Sbjct: 16 TLPKSVASIYFIAFLFGVAALLHYILGGILPAVLLLGFTYLFAILLDLILVKILGINFKL 75
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+ + ++I ++++++++ I + + +I+ + L+ F F+ +
Sbjct: 76 KRSSFLAFVSLVIWSTFLVLLLVLLAIRPVDVSLILAVALVLSFRFLIVLVS 127
>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class)
[Posttranslational modification, protein turnover,
chaperones].
Length = 436
Score = 30.8 bits (70), Expect = 3.1
Identities = 25/136 (18%), Positives = 57/136 (41%), Gaps = 19/136 (13%)
Query: 43 SQLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIII- 101
+L G K++ LQT + R + + I + +I++++ + +I +
Sbjct: 194 KKLDGRSRVAGKLVTLQTTNAPVETLEPSWRERLLNWITDPSVALILLLLGFLGLIFELL 253
Query: 102 -------IIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
II I++++ +++II+ I+I+ + +I ++ II
Sbjct: 254 SPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVAEAFVPGFGVIGLLGII 313
Query: 144 IIIIIIDLIFDFTFMY 159
+ II + L+F M
Sbjct: 314 LFIIGLLLLFPSGTMG 329
Score = 30.0 bits (68), Expect = 5.1
Identities = 13/77 (16%), Positives = 38/77 (49%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+++II+ I+I+ + +I ++ II+ II ++++ + ++ I + + + I+
Sbjct: 285 LLLIILGAILIVAEAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILS 344
Query: 144 IIIIIIDLIFDFTFMYL 160
I+ + +Y
Sbjct: 345 ILFKVFLGRLPAFKIYK 361
Score = 29.6 bits (67), Expect = 6.8
Identities = 14/82 (17%), Positives = 40/82 (48%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+++II+ I+I+ + +I ++ II+ II ++++ + ++ I + + + I+
Sbjct: 285 LLLIILGAILIVAEAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILS 344
Query: 143 IIIIIIIDLIFDFTFMYLKEFR 164
I+ + + + F L
Sbjct: 345 ILFKVFLGRLPAFKIYKLVRAT 366
Score = 29.2 bits (66), Expect = 8.9
Identities = 14/78 (17%), Positives = 41/78 (52%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+++II+ I+I+ + +I ++ II+ II ++++ + ++ I + + + I+
Sbjct: 285 LLLIILGAILIVAEAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILS 344
Query: 148 IIDLIFDFTFMYLKEFRV 165
I+ +F K +++
Sbjct: 345 ILFKVFLGRLPAFKIYKL 362
Score = 28.9 bits (65), Expect = 9.6
Identities = 13/81 (16%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIII 130
+++II+ I+I+ + +I ++ II+ II ++++ ++ I + + + I+
Sbjct: 285 LLLIILGAILIVAEAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILS 344
Query: 131 IIIIIIIIIIIIIIIIIIIDL 151
I+ + + + I ++
Sbjct: 345 ILFKVFLGRLPAFKIYKLVRA 365
>gnl|CDD|216842 pfam02009, Rifin_STEVOR, Rifin/stevor family. Several multicopy
gene families have been described in Plasmodium
falciparum, including the stevor family of subtelomeric
open reading frames and the rif interspersed repetitive
elements. Both families contain three predicted
transmembrane segments. It has been proposed that stevor
and rif are members of a larger superfamily that code
for variant surface antigens.
Length = 290
Score = 30.4 bits (69), Expect = 3.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 132 IIIIIIIIIIIIIIIIIIDLI 152
I I I+II+++++II LI
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 30.4 bits (69), Expect = 3.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 74 SKYIIIIIIIIIIIIIIIIIII 95
Y I I+II+++++II +I
Sbjct: 248 PIYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 77 IIIIIIIIIIIIIIIIIIIII 97
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 78 IIIIIIIIIIIIIIIIIIIII 98
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 79 IIIIIIIIIIIIIIIIIIIII 99
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 80 IIIIIIIIIIIIIIIIIIIII 100
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 81 IIIIIIIIIIIIIIIIIIIII 101
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 82 IIIIIIIIIIIIIIIIIIIII 102
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 83 IIIIIIIIIIIIIIIIIIIII 103
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 84 IIIIIIIIIIIIIIIIIIIII 104
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 85 IIIIIIIIIIIIIIIIIIIII 105
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 86 IIIIIIIIIIIIIIIIIIIII 106
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 87 IIIIIIIIIIIIIIIIIIIII 107
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 88 IIIIIIIIIIIIIIIIIIIII 108
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 89 IIIIIIIIIIIIIIIIIIIII 109
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 90 IIIIIIIIIIIIIIIIIIIII 110
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 91 IIIIIIIIIIIIIIIIIIIII 111
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 92 IIIIIIIIIIIIIIIIIIIII 112
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 93 IIIIIIIIIIIIIIIIIIIII 113
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 94 IIIIIIIIIIIIIIIIIIIII 114
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 95 IIIIIIIIIIIIIIIIIIIII 115
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 96 IIIIIIIIIIIIIIIIIIIII 116
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 97 IIIIIIIIIIIIIIIIIIIII 117
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 98 IIIIIIIIIIIIIIIIIIIII 118
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 99 IIIIIIIIIIIIIIIIIIIII 119
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 100 IIIIIIIIIIIIIIIIIIIII 120
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 101 IIIIIIIIIIIIIIIIIIIII 121
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 102 IIIIIIIIIIIIIIIIIIIII 122
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 103 IIIIIIIIIIIIIIIIIIIII 123
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 104 IIIIIIIIIIIIIIIIIIIII 124
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 105 IIIIIIIIIIIIIIIIIIIII 125
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 106 IIIIIIIIIIIIIIIIIIIII 126
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 107 IIIIIIIIIIIIIIIIIIIII 127
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 108 IIIIIIIIIIIIIIIIIIIII 128
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 109 IIIIIIIIIIIIIIIIIIIII 129
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 110 IIIIIIIIIIIIIIIIIIIII 130
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 111 IIIIIIIIIIIIIIIIIIIII 131
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 112 IIIIIIIIIIIIIIIIIIIII 132
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 113 IIIIIIIIIIIIIIIIIIIII 133
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 114 IIIIIIIIIIIIIIIIIIIII 134
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 115 IIIIIIIIIIIIIIIIIIIII 135
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 116 IIIIIIIIIIIIIIIIIIIII 136
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 117 IIIIIIIIIIIIIIIIIIIII 137
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 118 IIIIIIIIIIIIIIIIIIIII 138
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 119 IIIIIIIIIIIIIIIIIIIII 139
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 120 IIIIIIIIIIIIIIIIIIIII 140
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 121 IIIIIIIIIIIIIIIIIIIII 141
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 122 IIIIIIIIIIIIIIIIIIIII 142
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 123 IIIIIIIIIIIIIIIIIIIII 143
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 124 IIIIIIIIIIIIIIIIIIIII 144
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 125 IIIIIIIIIIIIIIIIIIIII 145
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 126 IIIIIIIIIIIIIIIIIIIII 146
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 127 IIIIIIIIIIIIIIIIIIIII 147
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 128 IIIIIIIIIIIIIIIIIIIII 148
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 129 IIIIIIIIIIIIIIIIIIIII 149
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
>gnl|CDD|146581 pfam04021, Class_IIIsignal, Class III signal peptide. This
family of archaeal proteins contains. an amino terminal
motif QXSXEXXXL that has been suggested to be part of a
class III signal sequence. With the Q being the +1
residue of the signal peptidase cleavage site. Two
members of this family are cleaved by a type IV
pilin-like signal peptidase.
Length = 28
Score = 26.9 bits (61), Expect = 3.2
Identities = 4/20 (20%), Positives = 13/20 (65%)
Query: 76 YIIIIIIIIIIIIIIIIIII 95
++++I+ ++++ II I
Sbjct: 9 FLLLILAVLVVAIIAIYYYT 28
>gnl|CDD|235881 PRK06870, secG, preprotein translocase subunit SecG; Reviewed.
Length = 76
Score = 28.3 bits (64), Expect = 3.2
Identities = 4/21 (19%), Positives = 19/21 (90%)
Query: 76 YIIIIIIIIIIIIIIIIIIII 96
Y +++++++I+ +++II++++
Sbjct: 2 YTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 77 IIIIIIIIIIIIIIIIIIIIII 98
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 78 IIIIIIIIIIIIIIIIIIIIII 99
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 79 IIIIIIIIIIIIIIIIIIIIII 100
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 80 IIIIIIIIIIIIIIIIIIIIII 101
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 81 IIIIIIIIIIIIIIIIIIIIII 102
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 82 IIIIIIIIIIIIIIIIIIIIII 103
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 83 IIIIIIIIIIIIIIIIIIIIII 104
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 84 IIIIIIIIIIIIIIIIIIIIII 105
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 85 IIIIIIIIIIIIIIIIIIIIII 106
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 86 IIIIIIIIIIIIIIIIIIIIII 107
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 87 IIIIIIIIIIIIIIIIIIIIII 108
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 88 IIIIIIIIIIIIIIIIIIIIII 109
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 89 IIIIIIIIIIIIIIIIIIIIII 110
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 90 IIIIIIIIIIIIIIIIIIIIII 111
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 91 IIIIIIIIIIIIIIIIIIIIII 112
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 92 IIIIIIIIIIIIIIIIIIIIII 113
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 93 IIIIIIIIIIIIIIIIIIIIII 114
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 94 IIIIIIIIIIIIIIIIIIIIII 115
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 95 IIIIIIIIIIIIIIIIIIIIII 116
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 96 IIIIIIIIIIIIIIIIIIIIII 117
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 97 IIIIIIIIIIIIIIIIIIIIII 118
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 98 IIIIIIIIIIIIIIIIIIIIII 119
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 99 IIIIIIIIIIIIIIIIIIIIII 120
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 100 IIIIIIIIIIIIIIIIIIIIII 121
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 101 IIIIIIIIIIIIIIIIIIIIII 122
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 102 IIIIIIIIIIIIIIIIIIIIII 123
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 103 IIIIIIIIIIIIIIIIIIIIII 124
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 104 IIIIIIIIIIIIIIIIIIIIII 125
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 105 IIIIIIIIIIIIIIIIIIIIII 126
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 106 IIIIIIIIIIIIIIIIIIIIII 127
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 107 IIIIIIIIIIIIIIIIIIIIII 128
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 108 IIIIIIIIIIIIIIIIIIIIII 129
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 109 IIIIIIIIIIIIIIIIIIIIII 130
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 110 IIIIIIIIIIIIIIIIIIIIII 131
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 111 IIIIIIIIIIIIIIIIIIIIII 132
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 112 IIIIIIIIIIIIIIIIIIIIII 133
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 113 IIIIIIIIIIIIIIIIIIIIII 134
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 114 IIIIIIIIIIIIIIIIIIIIII 135
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 115 IIIIIIIIIIIIIIIIIIIIII 136
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 116 IIIIIIIIIIIIIIIIIIIIII 137
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 117 IIIIIIIIIIIIIIIIIIIIII 138
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 118 IIIIIIIIIIIIIIIIIIIIII 139
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 119 IIIIIIIIIIIIIIIIIIIIII 140
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 120 IIIIIIIIIIIIIIIIIIIIII 141
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 121 IIIIIIIIIIIIIIIIIIIIII 142
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 122 IIIIIIIIIIIIIIIIIIIIII 143
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 123 IIIIIIIIIIIIIIIIIIIIII 144
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 124 IIIIIIIIIIIIIIIIIIIIII 145
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 125 IIIIIIIIIIIIIIIIIIIIII 146
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 126 IIIIIIIIIIIIIIIIIIIIII 147
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 127 IIIIIIIIIIIIIIIIIIIIII 148
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.1 bits (61), Expect = 7.8
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 128 IIIIIIIIIIIIIIIIIIIIII 149
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
>gnl|CDD|240532 cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. This
family might function as a translocase for
lipopolysaccharides and participate in the biosynthesis
of cell wall components such as teichuronic acid. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 406
Score = 30.5 bits (70), Expect = 3.2
Identities = 13/97 (13%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIII 124
K++ + I+ I+ + + + + +++ + +I ++ ++ ++I I
Sbjct: 310 EKWLPAVPILQILALAGLFQPLSSLNGSLLLALGRTDLLLKLGLIKAVLTVLALLIGIPY 369
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLK 161
II + I +I ++ + + + LI L+
Sbjct: 370 GIIGVAIAYVIASLLSFPLNLYLAGRLIGISLLELLR 406
>gnl|CDD|217757 pfam03840, SecG, Preprotein translocase SecG subunit.
Length = 74
Score = 28.2 bits (64), Expect = 3.2
Identities = 6/21 (28%), Positives = 18/21 (85%)
Query: 76 YIIIIIIIIIIIIIIIIIIII 96
Y I++++ +I+ I++II++++
Sbjct: 1 YTILLVLHVIVAILLIILVLL 21
>gnl|CDD|200378 TIGR04127, flavo_near_exo, exosortase F-associated protein.
Members of this protein family are always found next to
an exosortase/archaeosortase-like protein, and occur so
far only in the flavobacteria, within the Bacteroidetes.
Members do not have an obvious PEP-CTERM-like C-terminal
protein sorting domain.
Length = 136
Score = 29.1 bits (66), Expect = 3.4
Identities = 14/65 (21%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM---YLKEFRVEQ 167
++ ++II I+ II I+ +++ +I+II+ I++ + ++ Y++ F ++
Sbjct: 61 LLSLLIIYILFKDKGIIKFSAILYLVVFVILIILFYILLHDFEEENYLLLFYVRRFLIQ- 119
Query: 168 CPLFL 172
P+F+
Sbjct: 120 -PIFV 123
>gnl|CDD|227155 COG4818, COG4818, Predicted membrane protein [Function unknown].
Length = 105
Score = 28.9 bits (65), Expect = 3.4
Identities = 8/50 (16%), Positives = 25/50 (50%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
FVR + + + + ++II++ I I ++ ++ + I+ ++ +
Sbjct: 30 FVRFHAMQSFLTFLGLWLLIILLAFIPYIGWLLSGLVGLAAFILWLVCMY 79
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 30.8 bits (69), Expect = 3.4
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 471 SNLDEALLLMQQQQLMNPRDELLCNGNN-HSNDLELMM-DSDSSASSSNSEAS 521
S++DE L+ L N + E +GNN H+ D E ++ SS++ S SE S
Sbjct: 117 SSIDENELVDLDTLLDNDQPEKNESGNNDHATDKENLLESDASSSNDSESEES 169
>gnl|CDD|134335 PRK00625, PRK00625, shikimate kinase; Provisional.
Length = 173
Score = 29.7 bits (67), Expect = 3.5
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 587 AGGGGTGLSEAASDVIR-KQLLAIESDPLIDIHEKLQRK 624
A GGGT + E + IR + LL + S P+ I+++LQ++
Sbjct: 78 ALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKR 116
>gnl|CDD|204398 pfam10110, GPDPase_memb, Membrane domain of glycerophosphoryl
diester phosphodiesterase. Members of this family
comprise the membrane domain of the prokaryotic enzyme
glycerophosphoryl diester phosphodiesterase.
Length = 149
Score = 29.5 bits (67), Expect = 3.5
Identities = 14/75 (18%), Positives = 35/75 (46%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
++ +I ++II + + ++ I I I+ + +I+++++ +II + I
Sbjct: 43 LLFFLIYFLLIIPFANLGLKSPLLNKIKIPEFIVDYLSKNPWLIVLLLLFYLIIFYLGIR 102
Query: 151 LIFDFTFMYLKEFRV 165
LIF + L+
Sbjct: 103 LIFTLPLIILEHKSA 117
>gnl|CDD|183617 PRK12600, PRK12600, putative monovalent cation/H+ antiporter
subunit F; Reviewed.
Length = 94
Score = 28.4 bits (64), Expect = 3.6
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
II+ I +II+ I +++++I +I ++ + I I +I II + I++ + +
Sbjct: 4 IILSIALIIVAISMLLMLIRVIKGPTLADRVVALDAIGINLIAIIALFSILLDTKAYLEV 63
Query: 130 IIIIIIIIII 139
I++I I+ I
Sbjct: 64 ILLIGILAFI 73
Score = 28.4 bits (64), Expect = 3.6
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
II+ I +II+ I +++++I +I ++ + I I +I II + I++ + +
Sbjct: 4 IILSIALIIVAISMLLMLIRVIKGPTLADRVVALDAIGINLIAIIALFSILLDTKAYLEV 63
Query: 140 IIIIIIIIII 149
I++I I+ I
Sbjct: 64 ILLIGILAFI 73
Score = 27.6 bits (62), Expect = 6.6
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
II+ I +II+ I +++++I +I ++ + I I +I II + I++ + +
Sbjct: 4 IILSIALIIVAISMLLMLIRVIKGPTLADRVVALDAIGINLIAIIALFSILLDTKAYLEV 63
Query: 145 IIIIIDLIFDFTFMYLK 161
I++I L F T + K
Sbjct: 64 ILLIGILAFIGTAAFSK 80
>gnl|CDD|219185 pfam06808, DctM, DctM-like transporters. This family contains a
diverse range of predicted transporter proteins.
Including the DctM subunit of the bacterial and archaeal
TRAP C4-dicarboxylate transport (Dct) system permease.
In general, C4-dicarboxylate transport systems allow
C4-dicarboxylates like succinate, fumarate, and malate
to be taken up. TRAP C4-dicarboxylate carriers are
secondary carriers that use an electrochemical H+
gradient as the driving force for transport. DctM is an
integral membrane protein that is one of the
constituents of TRAP carriers. Note that many family
members are hypothetical proteins.
Length = 412
Score = 30.3 bits (69), Expect = 3.6
Identities = 9/53 (16%), Positives = 28/53 (52%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
K + +I++ ++++++ + + III++ I+ + I I ++I+
Sbjct: 307 GKLLFLILVNLLLLVLGMFLDPTAAIIILVPILAPAAAQLGIDPIHFGVVIVY 359
>gnl|CDD|165187 PHA02845, PHA02845, hypothetical protein; Provisional.
Length = 91
Score = 28.2 bits (63), Expect = 3.7
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
C++ E + Y+ I + I +I++II++I ++I I+ + II + + I
Sbjct: 25 CIINE-IENNHHYLFRPFIRLTIDLILLIIVMIFLMIRILKRNYFALFIIFLFYLFISFR 83
Query: 124 IIIIII 129
I I+
Sbjct: 84 NQIAIV 89
Score = 27.8 bits (62), Expect = 6.0
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I + I +I++II++I ++I I+ + II + L F +
Sbjct: 41 FIRLTIDLILLIIVMIFLMIRILKRNYFALFIIFLFYLFISF-RNQI 86
Score = 27.4 bits (61), Expect = 7.5
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
I + I +I++II++I ++I I+ + II + + I I ++F+
Sbjct: 41 FIRLTIDLILLIIVMIFLMIRILKRNYFALFIIFLFYLFISFRNQIAIVFN 91
>gnl|CDD|227270 COG4934, COG4934, Predicted protease [Posttranslational modification,
protein turnover, chaperones].
Length = 1174
Score = 30.5 bits (69), Expect = 3.8
Identities = 13/72 (18%), Positives = 27/72 (37%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ I + II +I+ + ++ + +I + I+
Sbjct: 1098 TLYNTDQTQTSSYISSTLPAHNYIINLILQLNNGQFNQSNANVVSYSNPVSLITNLAILA 1157
Query: 137 IIIIIIIIIIII 148
IIII I+ I+I+
Sbjct: 1158 IIIIYILAILIV 1169
Score = 30.5 bits (69), Expect = 3.8
Identities = 13/72 (18%), Positives = 27/72 (37%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ I + II +I+ + ++ + +I + I+
Sbjct: 1098 TLYNTDQTQTSSYISSTLPAHNYIINLILQLNNGQFNQSNANVVSYSNPVSLITNLAILA 1157
Query: 138 IIIIIIIIIIII 149
IIII I+ I+I+
Sbjct: 1158 IIIIYILAILIV 1169
Score = 30.5 bits (69), Expect = 3.8
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S YI + II +I+ + ++ + +I + I+ IIII I+ I+
Sbjct: 1108 SSYISSTLPAHNYIINLILQLNNGQFNQSNANVVSYSNPVSLITNLAILAIIIIYILAIL 1167
Query: 134 II 135
I+
Sbjct: 1168 IV 1169
Score = 30.1 bits (68), Expect = 4.7
Identities = 14/70 (20%), Positives = 27/70 (38%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
Y I + II +I+ + ++ + +I + I+ II
Sbjct: 1100 YNTDQTQTSSYISSTLPAHNYIINLILQLNNGQFNQSNANVVSYSNPVSLITNLAILAII 1159
Query: 136 IIIIIIIIII 145
II I+ I+I+
Sbjct: 1160 IIYILAILIV 1169
Score = 30.1 bits (68), Expect = 5.8
Identities = 12/78 (15%), Positives = 26/78 (33%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ I + II +I+ + ++ + +I +
Sbjct: 1094 SYPSTLYNTDQTQTSSYISSTLPAHNYIINLILQLNNGQFNQSNANVVSYSNPVSLITNL 1153
Query: 139 IIIIIIIIIIIDLIFDFT 156
I+ IIII I+ ++ F
Sbjct: 1154 AILAIIIIYILAILIVFR 1171
Score = 29.7 bits (67), Expect = 6.4
Identities = 14/73 (19%), Positives = 27/73 (36%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
S I + II +I+ + ++ + +I + I+
Sbjct: 1097 STLYNTDQTQTSSYISSTLPAHNYIINLILQLNNGQFNQSNANVVSYSNPVSLITNLAIL 1156
Query: 134 IIIIIIIIIIIII 146
IIII I+ I+I+
Sbjct: 1157 AIIIIYILAILIV 1169
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 30.3 bits (69), Expect = 3.8
Identities = 1/62 (1%), Positives = 36/62 (58%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ ++ + + + + + + + + + +++ ++++++++++ I++ ++ + ++ ++
Sbjct: 253 LSEKLEPFGYGLFLPLFFVSVGLSLDLSSLLLSLLLLVLLLLVAILLGKLLGVFLLARLL 312
Query: 130 II 131
+
Sbjct: 313 GL 314
Score = 29.9 bits (68), Expect = 5.3
Identities = 2/62 (3%), Positives = 34/62 (54%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+ + + + + + + + +++ ++++++++++ I++ ++ + ++ ++ + L
Sbjct: 264 LFLPLFFVSVGLSLDLSSLLLSLLLLVLLLLVAILLGKLLGVFLLARLLGLSLREALIVG 323
Query: 159 YL 160
+
Sbjct: 324 FG 325
Score = 29.5 bits (67), Expect = 6.6
Identities = 5/86 (5%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIIII 133
+ + + + + + + +++ ++++++++++ I++ ++ + ++ ++ + +I+
Sbjct: 266 LPLFFVSVGLSLDLSSLLLSLLLLVLLLLVAILLGKLLGVFLLARLLGLSLREALIVGFG 325
Query: 134 IIIIIIIIIIIIIIIIDLIFDFTFMY 159
+ + + + I + L +Y
Sbjct: 326 GLQRGAVSLALAAIGLQLGLIDRELY 351
>gnl|CDD|223646 COG0573, PstC, ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 310
Score = 30.3 bits (69), Expect = 3.9
Identities = 6/32 (18%), Positives = 21/32 (65%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII 102
RKR + + ++ +I+++ +++I++ ++I
Sbjct: 14 RKRKEKLFKALLFAAAVIVVLALLLILVFLLI 45
Score = 28.7 bits (65), Expect = 9.3
Identities = 5/36 (13%), Positives = 20/36 (55%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIII 105
K+ K + ++ +I+++ +++I++ ++I
Sbjct: 10 KIKKRKRKEKLFKALLFAAAVIVVLALLLILVFLLI 45
Score = 28.7 bits (65), Expect = 9.5
Identities = 7/47 (14%), Positives = 21/47 (44%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+ ++ +I+++ +++I++ ++I I L F F
Sbjct: 16 RKEKLFKALLFAAAVIVVLALLLILVFLLIEAIPAFQKFGLSLFFLF 62
>gnl|CDD|218128 pfam04523, Herpes_U30, Herpes virus tegument protein U30. This
family is named after the human herpesvirus protein, but
has been characterized in cytomegalovirus as UL47.
Cytomegalovirus UL47 is a component of the tegument,
which is a protein layer surrounding the viral capsid.
UL47 co-precipitates with UL48 and UL69 tegument
proteins, and the major capsid protein UL86. A
UL47-containing complex is thought to be involved in the
release of viral DNA from the disassembling virus
particle.
Length = 883
Score = 30.4 bits (69), Expect = 3.9
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 627 LLQTVLNSTNSGSHHFGGPLESIVGGTSALSSNNFSPTTSSPLSHFLSSRPPAP-----G 681
L + + +S L I+ L + T + + L +P
Sbjct: 315 LGSYLQIACSSKKQ---LSLSDILEIKRRLLRLGLTEETCATYATMLLLQPSGSAPRWKN 371
Query: 682 FGTTADNLNQLDSNTNVFINHISQNQFSNT 711
A L+QL + F + Q+S T
Sbjct: 372 LSEFAQLLSQLILFAHYFYLCLE--QYSPT 399
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 77 IIIIIIIIIIIIIIIIIIIII 97
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 78 IIIIIIIIIIIIIIIIIIIII 98
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 79 IIIIIIIIIIIIIIIIIIIII 99
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 80 IIIIIIIIIIIIIIIIIIIII 100
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 81 IIIIIIIIIIIIIIIIIIIII 101
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 82 IIIIIIIIIIIIIIIIIIIII 102
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 83 IIIIIIIIIIIIIIIIIIIII 103
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 84 IIIIIIIIIIIIIIIIIIIII 104
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 85 IIIIIIIIIIIIIIIIIIIII 105
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 86 IIIIIIIIIIIIIIIIIIIII 106
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 87 IIIIIIIIIIIIIIIIIIIII 107
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 88 IIIIIIIIIIIIIIIIIIIII 108
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 89 IIIIIIIIIIIIIIIIIIIII 109
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 90 IIIIIIIIIIIIIIIIIIIII 110
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 91 IIIIIIIIIIIIIIIIIIIII 111
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 92 IIIIIIIIIIIIIIIIIIIII 112
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 93 IIIIIIIIIIIIIIIIIIIII 113
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 94 IIIIIIIIIIIIIIIIIIIII 114
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 95 IIIIIIIIIIIIIIIIIIIII 115
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 96 IIIIIIIIIIIIIIIIIIIII 116
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 97 IIIIIIIIIIIIIIIIIIIII 117
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 98 IIIIIIIIIIIIIIIIIIIII 118
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 99 IIIIIIIIIIIIIIIIIIIII 119
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 100 IIIIIIIIIIIIIIIIIIIII 120
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 101 IIIIIIIIIIIIIIIIIIIII 121
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 102 IIIIIIIIIIIIIIIIIIIII 122
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 103 IIIIIIIIIIIIIIIIIIIII 123
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 104 IIIIIIIIIIIIIIIIIIIII 124
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 105 IIIIIIIIIIIIIIIIIIIII 125
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 106 IIIIIIIIIIIIIIIIIIIII 126
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 107 IIIIIIIIIIIIIIIIIIIII 127
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 108 IIIIIIIIIIIIIIIIIIIII 128
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 109 IIIIIIIIIIIIIIIIIIIII 129
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 110 IIIIIIIIIIIIIIIIIIIII 130
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 111 IIIIIIIIIIIIIIIIIIIII 131
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 112 IIIIIIIIIIIIIIIIIIIII 132
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 113 IIIIIIIIIIIIIIIIIIIII 133
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 114 IIIIIIIIIIIIIIIIIIIII 134
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 115 IIIIIIIIIIIIIIIIIIIII 135
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 116 IIIIIIIIIIIIIIIIIIIII 136
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 117 IIIIIIIIIIIIIIIIIIIII 137
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 118 IIIIIIIIIIIIIIIIIIIII 138
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 119 IIIIIIIIIIIIIIIIIIIII 139
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 120 IIIIIIIIIIIIIIIIIIIII 140
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 121 IIIIIIIIIIIIIIIIIIIII 141
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 122 IIIIIIIIIIIIIIIIIIIII 142
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 123 IIIIIIIIIIIIIIIIIIIII 143
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 124 IIIIIIIIIIIIIIIIIIIII 144
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 125 IIIIIIIIIIIIIIIIIIIII 145
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 126 IIIIIIIIIIIIIIIIIIIII 146
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 127 IIIIIIIIIIIIIIIIIIIII 147
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 128 IIIIIIIIIIIIIIIIIIIII 148
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
Score = 30.1 bits (69), Expect = 3.9
Identities = 3/21 (14%), Positives = 15/21 (71%)
Query: 129 IIIIIIIIIIIIIIIIIIIII 149
I++ +++I++ + +I ++ +
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFV 233
>gnl|CDD|222436 pfam13886, DUF4203, Domain of unknown function (DUF4203). This is
the N-terminal region of 7tm proteins. The function is
not known.
Length = 210
Score = 29.5 bits (67), Expect = 4.0
Identities = 10/89 (11%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIII 128
II+I+ ++ I + + + +I+ ++I + ++ ++
Sbjct: 5 IILILFGLVYCFIGYRCFKATMFLSGFLFGSLIVFLLITKITLLVTNARLGASLVAGVVG 64
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
I+ ++ + +I+ + + + L+ F
Sbjct: 65 GAILGLLWWVFLIVSVGLFCVGLLLGFLL 93
>gnl|CDD|221689 pfam12648, TcpE, TcpE family. This family of proteins includes
TcpE a conjugative transposon membrane protein.This
family of proteins is found in bacteria. Proteins in
this family are typically between 122 and 168 amino
acids in length.
Length = 108
Score = 28.4 bits (64), Expect = 4.0
Identities = 7/51 (13%), Positives = 22/51 (43%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+ I +I +I++ +I+ ++ + I +++ I+I +
Sbjct: 29 LGIFVISLIVLALILGLLPGVFSIFGFDNGWLLLYIVIPGGLTWFASKKKP 79
>gnl|CDD|233011 TIGR00529, AF0261, integral membrane protein, TIGR00529 family.
This protein is predicted to have 10 transmembrane
regions. Members of this family are found so far in the
Archaea (Archaeoglobus fulgidus and Pyrococcus
horikoshii) and in a bacterial thermophile, Thermotoga
maritima. In Pyrococcus, the gene is located between
nadA and nadB, two components of an enzyme involved in
de novo synthesis of NAD. By PSI-BLAST, this family
shows similarity (but not necessarily homology) to
gluconate permease and other transport proteins
[Hypothetical proteins, Conserved].
Length = 387
Score = 30.2 bits (68), Expect = 4.1
Identities = 13/92 (14%), Positives = 48/92 (52%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ +++ + +I+++I+ + I ++I + ++I+ +++ + + + + + +I+
Sbjct: 2 LSVLLSLFTVIVVLIVFKKVNIGLLIFVGVMILALLVRLGLEGFLWTLSLADSFWSLIVT 61
Query: 143 IIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQH 174
I II + + + +F L +F +F ++
Sbjct: 62 IFIIAFLSGMMEKSFGDLSKFSEGMRTIFSKN 93
>gnl|CDD|218565 pfam05346, DUF747, Eukaryotic membrane protein family. This family
is a family of eukaryotic membrane proteins. It was
previously annotated as including a putative receptor
for human cytomegalovirus gH but this has has since been
disputed. Analysis of the mouse Tapt1 protein
(transmembrane anterior posterior transformation 1) has
shown it to be involved in patterning of the vertebrate
axial skeleton.
Length = 320
Score = 30.0 bits (68), Expect = 4.2
Identities = 9/84 (10%), Positives = 37/84 (44%)
Query: 57 YLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
+L K ++ + I + + + ++I+ ++ I ++ + I
Sbjct: 225 FLDVLCKDILQSRQLNEQTLLSASHKITRRLGFPPLPLAVLILRMLYPIYQMLFSSLSSI 284
Query: 117 IIIIIIIIIIIIIIIIIIIIIIII 140
I++ ++ ++++ + I++ I++
Sbjct: 285 SGIVLFLLSFLMLLFLKILLGILL 308
>gnl|CDD|181433 PRK08455, fliL, flagellar basal body-associated protein FliL;
Reviewed.
Length = 182
Score = 29.7 bits (67), Expect = 4.2
Identities = 9/28 (32%), Positives = 24/28 (85%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIII 99
K+SK ++IIII +++++++I+ +I +++
Sbjct: 14 KKSKALLIIIIGVVVLLLLIVGVIAMLL 41
>gnl|CDD|223472 COG0395, UgpE, ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism].
Length = 281
Score = 29.8 bits (68), Expect = 4.3
Identities = 6/63 (9%), Positives = 32/63 (50%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
R R K ++ +++++ +++ +++I + +++ + ++ +I+ + + I
Sbjct: 100 LARFRFKGRKLLFLLLLLTLMLPAQVLLIPLYLLMRKLGLLNTYWGLILPYLAFGLPFAI 159
Query: 129 III 131
++
Sbjct: 160 FLL 162
Score = 29.1 bits (66), Expect = 7.7
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIII 104
KRS+ I I++ +++I++ ++ + + +I+
Sbjct: 2 MKRSRRKIRKILLYLLLILVALLFLFPLYWMILT 35
>gnl|CDD|223654 COG0581, PstA, ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 292
Score = 29.9 bits (68), Expect = 4.3
Identities = 15/100 (15%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------II 123
R+ + ++ + + ++ ++ I+ I+I I + + + I
Sbjct: 11 RRRIKNKLATGLVFLAAAVALLPLLWILWTILIRGIPALSLNLEFFTGSPSPPGEGGGIG 70
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
I+ + +I++ I+I + + I I YL E+
Sbjct: 71 PAIVGTLYLILLAILIGVPLGIGAGI---------YLAEY 101
>gnl|CDD|224093 COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type
transport systems, permease components [Carbohydrate
transport and metabolism].
Length = 316
Score = 29.8 bits (68), Expect = 4.3
Identities = 11/105 (10%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIII-----IIII--- 111
+R+ + +++ +++++++ +I ++ I+ I+ I+ +II
Sbjct: 4 LLRRLRELGLLLALVLLVLVFSLISPPGFLSLSNLLNILRQAAILGILALGMTFVIITGG 63
Query: 112 ----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ ++ + ++ ++ + I++ ++ + + +I LI
Sbjct: 64 IDLSVGSVVALAAVVAASLLAAGGGLPILLALLAALAVGALIGLI 108
>gnl|CDD|237148 PRK12599, PRK12599, putative monovalent cation/H+ antiporter
subunit F; Reviewed.
Length = 91
Score = 28.0 bits (63), Expect = 4.4
Identities = 6/61 (9%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIDLIFDFT 156
+ ++ +I +++++ +I+ + +I+ ++ + + I + II ++
Sbjct: 1 MTLLEDAFLIAAVLLVLALILSLYRVILGPTLPDRVVALDTLNTITVGIIAVLAAATGRP 60
Query: 157 F 157
Sbjct: 61 L 61
>gnl|CDD|219123 pfam06653, Claudin_3, Tight junction protein, Claudin-like. This
is a family of probable membrane tight junction,
Claudin-like, proteins.
Length = 165
Score = 29.3 bits (66), Expect = 4.4
Identities = 11/62 (17%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIII 149
++ I + +++I+I I+ + + + +I ++ ++I I+ ++ I+I I
Sbjct: 59 WMMYISFALFLVLILIYIVAVRKVKKNGYSHYQRKLFFLIALLSLLIAILTVVAFILIAI 118
Query: 150 DL 151
+L
Sbjct: 119 NL 120
Score = 29.3 bits (66), Expect = 4.5
Identities = 11/57 (19%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 76 YIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIIIIIII 121
YI + +++I+I I+ + + + +I ++ ++I I+ ++ I+I I
Sbjct: 62 YISFALFLVLILIYIVAVRKVKKNGYSHYQRKLFFLIALLSLLIAILTVVAFILIAI 118
>gnl|CDD|220572 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocytoplasmic
transport domain. Brr6_like_C_C is the highly conserved
C-terminal region of a group of proteins found in fungi.
It carries four highly conserved cysteine residues. It
is suggested that members of the family interact with
each other via di-sulfide bridges to form a complex
which is involved in nucleocytoplasmic transport. Brr6
in yeast is an essential integral membrane protein of
the NE-ER, wit two predicted transmembrane domains, and
is a dosage suppressor of Apq12, pfam12716.
Length = 135
Score = 28.8 bits (65), Expect = 4.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIII 100
S Y+ +I II++ II+ ++ I I
Sbjct: 2 SSYLQLIFNIILVSIILYLVFSFIKTI 28
>gnl|CDD|218858 pfam06024, DUF912, Nucleopolyhedrovirus protein of unknown function
(DUF912). This family consists of several
Nucleopolyhedrovirus proteins of unknown function.
Length = 101
Score = 28.4 bits (64), Expect = 4.5
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIII 102
K + II+I ++ +++++ I +I+
Sbjct: 57 KANAGNIILIGLLAFFCVLVLLYAIYYFVIL 87
>gnl|CDD|223246 COG0168, TrkG, Trk-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 499
Score = 30.0 bits (68), Expect = 4.5
Identities = 13/76 (17%), Positives = 31/76 (40%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I +++ + + + +I + I I I + + ++I+II +
Sbjct: 356 IKTTRFAVLLKALKRELRRLGHPNAVISVKIFGRAIDEDTIRKALAFFFLYLLILIIGAL 415
Query: 139 IIIIIIIIIIIDLIFD 154
I+I+ ID +F+
Sbjct: 416 ILILTGYDPFIDALFE 431
>gnl|CDD|224280 COG1361, COG1361, S-layer domain [Cell envelope biogenesis, outer
membrane].
Length = 500
Score = 30.2 bits (68), Expect = 4.7
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIII 100
V II+ + ++I +III++++I++
Sbjct: 470 VSPSVSKIIVAVPVLIAVIIIVLVVIVVRKK 500
Score = 29.1 bits (65), Expect = 9.3
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 74 SKYIIIIIII------IIIIIIIIIIIIIIIIIIIIIIII 107
SK I I + + II+ + ++I +III++++I++
Sbjct: 461 SKPITIYVTVSPSVSKIIVAVPVLIAVIIIVLVVIVVRKK 500
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 29.9 bits (68), Expect = 4.7
Identities = 7/94 (7%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIII- 119
+V + ++++I I I+ + + ++ +++ I ++++ +
Sbjct: 249 FTYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLP 308
Query: 120 ---IIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+ + ++++++ I + + ++ ++ ++D
Sbjct: 309 PGSLWLFLVLVVLAGIGLGLATLLPWAMLADVVD 342
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins;
solute binding domain. LeuT is a bacterial amino acid
transporter with specificity for the hydrophobic amino
acids glycine, alanine, methionine, and leucine. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family; LeuT has been used as a structural
template for understanding fundamental aspects of SLC6
function. It has an arrangement of 12 transmembrane
helices (TMs), which appears to be a common motif for
eukaryotic and some prokaryotic and archaeal SLC6s: an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12.
Length = 500
Score = 29.9 bits (68), Expect = 4.8
Identities = 13/80 (16%), Positives = 31/80 (38%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
R I + +I I +I++++ I I +I ++I + I +
Sbjct: 419 NRGALIKVPRFFKYVIKYITPAFLIVVLVFFTIDYIPGGYFKLIPDFEVLIPWVNIARFV 478
Query: 132 IIIIIIIIIIIIIIIIIIDL 151
II + + + ++ + I
Sbjct: 479 IIGVFLFLTFLVYLAIKRKY 498
>gnl|CDD|214438 MTH00154, COX2, cytochrome c oxidase subunit II; Provisional.
Length = 227
Score = 29.4 bits (67), Expect = 4.9
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIII 117
+ ++I+I+I I++ ++I ++ I II I+ II+I I
Sbjct: 26 HTMMILIMITILVGYMMISLLFNKFTNRFLLEGQEIEIIWTILPAIILIFI 76
Score = 29.4 bits (67), Expect = 5.3
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIII 137
++I+I+I I++ ++I ++ I II I+ II+I I
Sbjct: 27 TMMILIMITILVGYMMISLLFNKFTNRFLLEGQEIEIIWTILPAIILIFI 76
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 30.0 bits (68), Expect = 5.0
Identities = 6/72 (8%), Positives = 27/72 (37%), Gaps = 13/72 (18%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIII 114
+ K +++I I+ +I++ + +++ + + + II
Sbjct: 36 YWASPVRKRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAII 95
Query: 115 IIIIIIIIIIII 126
+++++ +
Sbjct: 96 AGLLVLLNVAQT 107
>gnl|CDD|217638 pfam03611, EIIC-GAT, PTS system sugar-specific permease component.
This family includes bacterial transmembrane proteins
with a putative sugar-specific permease function,
including and analogous to the IIC component of the PTS
system. It has been suggested that this permease may
form part of an L-ascorbate utilisation pathway, with
proposed specificity for 3-keto-L-gulonate (formed by
hydrolysis of L-ascorbate). This family includes the IIC
component of the galactitol specific GAT family PTS
system.
Length = 406
Score = 29.8 bits (68), Expect = 5.0
Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIIIII 132
++I + I ++ I I+I ++ +I+ + + + II I
Sbjct: 313 AVLIGFLSSFIGGLVPIFILIALLAVILPGNVPLFFGGAAAGVFGNATGGTRGAIIGSFI 372
Query: 133 IIIIIIIIIIIIIIIIIDLIFD 154
IIII + +++ ++ L +
Sbjct: 373 NGIIIIFLPLLLATLLAPLGTE 394
Score = 29.0 bits (66), Expect = 8.2
Identities = 7/62 (11%), Positives = 23/62 (37%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ I+++I+ +I + + + I+ I+ I + I+ + +
Sbjct: 218 GDSMVAGAILMLILGLIAGLFAGPDFVEELSGGQNWIVYILTQGITFAAGMAILPRGVRM 277
Query: 133 II 134
+
Sbjct: 278 FL 279
>gnl|CDD|183405 PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed.
Length = 344
Score = 29.7 bits (67), Expect = 5.0
Identities = 14/78 (17%), Positives = 44/78 (56%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I+I++ +++II+ I II+ I+ + I +++ ++ ++ + ++ + +++ II
Sbjct: 13 IVIMLGMLVIILCGIRFAADIIVPFILALFIAVVLNPLVQHMVRWRVPRVLAVSLLMTII 72
Query: 146 IIIIDLIFDFTFMYLKEF 163
++++ L+ + L E
Sbjct: 73 VMLMVLLLAYLGSSLNEL 90
>gnl|CDD|225419 COG2864, FdnI, Cytochrome b subunit of formate dehydrogenase
[Energy production and conversion].
Length = 218
Score = 29.6 bits (67), Expect = 5.1
Identities = 12/67 (17%), Positives = 31/67 (46%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
++ I+ I++++I I+I I ++ + +++ +I+I III+ I +
Sbjct: 116 LLFWTAILAIVLLLITGIVIWRPYFAPYFSIPLLRLSLLLHAFAAVILIFIIIVHIYMAF 175
Query: 152 IFDFTFM 158
+
Sbjct: 176 WVKGSIR 182
Score = 29.2 bits (66), Expect = 6.4
Identities = 14/67 (20%), Positives = 32/67 (47%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
KY ++ I+ I++++I I+I I ++ + +++ +I+I I
Sbjct: 107 VGKYNAGQKLLFWTAILAIVLLLITGIVIWRPYFAPYFSIPLLRLSLLLHAFAAVILIFI 166
Query: 133 IIIIIII 139
II+ I +
Sbjct: 167 IIVHIYM 173
Score = 28.9 bits (65), Expect = 7.0
Identities = 13/66 (19%), Positives = 31/66 (46%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
++ I+ I++++I I+I I ++ + +++ +I+I III+ I + F
Sbjct: 116 LLFWTAILAIVLLLITGIVIWRPYFAPYFSIPLLRLSLLLHAFAAVILIFIIIVHIYMAF 175
Query: 154 DFTFMY 159
Sbjct: 176 WVKGSI 181
>gnl|CDD|224094 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 289
Score = 29.5 bits (67), Expect = 5.1
Identities = 11/95 (11%), Positives = 38/95 (40%), Gaps = 18/95 (18%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----- 133
+++ I I + +++ I+++ I+ ++ +I+ + ++ I+ ++ +
Sbjct: 120 VLMRITDIFLAFPSLLLAILLVAILGPGLLNLILALALVGWPGYARIVRGQVLSLREREY 179
Query: 134 -------------IIIIIIIIIIIIIIIIDLIFDF 155
II I+ ++ +I+ D
Sbjct: 180 VEAARALGASTLRIIFRHILPNVLPPLIVLATLDI 214
Score = 29.5 bits (67), Expect = 5.4
Identities = 6/48 (12%), Positives = 25/48 (52%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+++ I I + +++ I+++ I+ ++ +I+ + ++ I+
Sbjct: 120 VLMRITDIFLAFPSLLLAILLVAILGPGLLNLILALALVGWPGYARIV 167
Score = 29.5 bits (67), Expect = 5.4
Identities = 6/48 (12%), Positives = 25/48 (52%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
+++ I I + +++ I+++ I+ ++ +I+ + ++ I+
Sbjct: 120 VLMRITDIFLAFPSLLLAILLVAILGPGLLNLILALALVGWPGYARIV 167
>gnl|CDD|223869 COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases
[Inorganic ion transport and metabolism].
Length = 342
Score = 29.6 bits (67), Expect = 5.5
Identities = 18/112 (16%), Positives = 44/112 (39%), Gaps = 28/112 (25%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---------- 126
++ I++ + + +I I + I +++ + I +I ++ I+I
Sbjct: 151 LLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYES 210
Query: 127 --------IIIIIIIIIIIIIIII----------IIIIIIIDLIFDFTFMYL 160
I +I +++ I++I I++I I L+ F M+
Sbjct: 211 RFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLLMFF 262
Score = 29.2 bits (66), Expect = 7.9
Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 75 KYIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIIIII---I 120
K +++ + I +I ++ I+I + I I +I +++ I++I
Sbjct: 179 KSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQ 238
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
I+ + I++I I ++I +++ I I +
Sbjct: 239 IVEQPLDILLIAIPLLIYFLLMFFISYFIAKALGLPY 275
Score = 29.2 bits (66), Expect = 8.3
Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 22/107 (20%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------------I 117
+ +I I + I +++ + I +I ++ I+I I
Sbjct: 160 LGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPI 219
Query: 118 IIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+I +++ I++I I+ + I++I I ++I + F Y
Sbjct: 220 ALIGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLLMFFISYF 266
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and
metabolism].
Length = 541
Score = 29.9 bits (68), Expect = 5.5
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 58 LQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIII-------------IIIIIIIIIIII 104
L A+ + F +I I I +++I ++ + I ++ II II
Sbjct: 143 LTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFII 202
Query: 105 IIIIIIIIII 114
+ IIII
Sbjct: 203 LGIIIICGGG 212
Score = 29.5 bits (67), Expect = 6.3
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Query: 58 LQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIII-------------IIIIIIIIII 104
L+ +V ++ + I I I +++I ++ + I ++ II
Sbjct: 141 LELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGF 200
Query: 105 IIIIIIIIIIII 116
II+ IIII
Sbjct: 201 IILGIIIICGGG 212
>gnl|CDD|225813 COG3274, COG3274, Predicted O-acyltransferase [General function
prediction only].
Length = 332
Score = 29.7 bits (67), Expect = 5.6
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 13/100 (13%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------I 115
F +RS + + I + +I III I + I + I+ I
Sbjct: 65 FFGERSAQPKLFLRIGLSLIFYSIIIWFWISLFTPINFEFALKNILQKPVFYHLWFLFAI 124
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
+ I +I +I +I++ ++I+I +++I+ L F +
Sbjct: 125 LGIYLISPLIQVILVSNRKLLILIYLLLIVFNASTLPFLY 164
>gnl|CDD|225519 COG2972, COG2972, Predicted signal transduction protein with a
C-terminal ATPase domain [Signal transduction
mechanisms].
Length = 456
Score = 29.7 bits (67), Expect = 5.6
Identities = 13/96 (13%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------ 129
Y + I + I+ ++ ++ +I I+ + I + +I+I I+
Sbjct: 19 YYFSYFLNSIQKLRNILSFLLSGKLVFVISNIVSLFFNIFSYLTLILIEFFILFLLLYAK 78
Query: 130 --IIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
+ + I+ + +I+ +++D + + L
Sbjct: 79 SKKKFGLEMFILFVPLILDLLLDRVLGVLLIPLDFL 114
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 30.1 bits (69), Expect = 5.6
Identities = 7/47 (14%), Positives = 29/47 (61%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 118
K K+ + + I+++ I+ ++I+ + ++ +++ I + ++I+++
Sbjct: 14 KLLKWRDLAVAILVLAILAMMILPLPPFLLDLLLTFNIALSVLILLV 60
Score = 29.3 bits (67), Expect = 8.0
Identities = 5/40 (12%), Positives = 26/40 (65%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ + I+++ I+ ++I+ + ++ +++ I + ++I+++
Sbjct: 21 LAVAILVLAILAMMILPLPPFLLDLLLTFNIALSVLILLV 60
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 29.5 bits (67), Expect = 5.6
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
SKY+ I +I +I I++ + II+ + + I + +II +I+
Sbjct: 101 SSKYLFIQLIFPVIYSSFILVYGFLERDDETIIVCAPPLALNGTAFRIFTLSSVIINVIV 160
Query: 130 IIIIIIIIIII 140
+I+ II+III
Sbjct: 161 LIVYIILIIIF 171
Score = 28.7 bits (65), Expect = 9.8
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIII------------IIIIIIIIIIIIIIIIIIIII 123
+ I + +II +I++I+ II+III + + + +II I I
Sbjct: 146 FRIFTLSSVIINVIVLIVYIILIIIFKKKGQTTNSDSKKVFKSLQVTVIIFIFGWFTSTI 205
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF--MYL--KEFR 164
+ +++ + II + I ++L F F Y E+R
Sbjct: 206 ANTVFLLLTEDGEVENIIQMYAGIFVNLSFSQNFFVTYWRSSEYR 250
>gnl|CDD|223804 COG0732, HsdS, Restriction endonuclease S subunits [Defense
mechanisms].
Length = 391
Score = 29.6 bits (66), Expect = 5.8
Identities = 15/87 (17%), Positives = 26/87 (29%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
++ I+ + I I + + I + I I II +
Sbjct: 225 VSYGKNPVLNGGEPNNGDIVKLSRIDNFIYGLKLSGGKYITLSSSGATIGIAIINNGTLK 284
Query: 135 IIIIIIIIIIIIIIIDLIFDFTFMYLK 161
I+ I I+ I F + YL
Sbjct: 285 FILSQGIGILRIENKVEGEKFLYYYLS 311
Score = 29.6 bits (66), Expect = 6.1
Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 3/132 (2%)
Query: 26 SNADLNSMSISALKCIQSQLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIII 85
+ + N+ I L I + + G K + L ++ + + + I+ I I
Sbjct: 234 NGGEPNNGDIVKLSRIDNFIYGLKLSGGKYITLSSSGATIGIAIINNGTLKFILSQGIGI 293
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---IIIIII 142
+ I + + + II + I + ++ I I I I
Sbjct: 294 LRIENKVEGEKFLYYYLSSEFFKKIIKKVSKGSTIPRLNKKLLEEIPIPIPPLEEQQKIA 353
Query: 143 IIIIIIIDLIFD 154
I+ + LI
Sbjct: 354 EILSALDKLIDI 365
>gnl|CDD|226899 COG4512, AgrB, Membrane protein putatively involved in
post-translational modification of the autoinducing
quorum-sensing peptide [Posttranslational modification,
protein turnover, chaperones / Signal transduction
mechanisms / Transcription].
Length = 198
Score = 29.0 bits (65), Expect = 5.9
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 114
RKR K I+++++ II++II I++ + I ++ I
Sbjct: 139 RKRLKKRAAIMLLLLFIILLIIPPFSKQGIVLGSLFQGISLLPI 182
>gnl|CDD|233737 TIGR02123, TRAP_fused, TRAP transporter, 4TM/12TM fusion protein.
In some species, the 12-transmembrane spanning and
4-transmembrane spanning components of tripartite
ATP-independent periplasmic (TRAP)-type transporters are
fused. This model describes such transporters, found in
the Archaea and in Bacteria [Transport and binding
proteins, Unknown substrate].
Length = 613
Score = 29.9 bits (68), Expect = 5.9
Identities = 9/92 (9%), Positives = 38/92 (41%), Gaps = 17/92 (18%)
Query: 75 KYIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIII-------------III 117
K + ++ + + +++ + I++ I II ++ I +
Sbjct: 514 KLALAGYLVPFMFVYNPALLLQDSSTWLEILLAFITAIIGVLAIGAATSGYLLGALNLWE 573
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
+++I ++I+ + ++ + I+ ++ ++
Sbjct: 574 RVLLIAAGFLLILPEWLSDLVGLAILALVFLL 605
>gnl|CDD|225742 COG3201, PnuC, Nicotinamide mononucleotide transporter [Coenzyme
metabolism].
Length = 222
Score = 29.3 bits (66), Expect = 6.0
Identities = 8/56 (14%), Positives = 25/56 (44%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
+I++++ +I+ + + I +I + ++ ++ I LI + Y+
Sbjct: 10 LILVLLALILTYGGVKLSWIELIATLSGLLCVVFASKGKPINYFFGLINVALYAYI 65
>gnl|CDD|113857 pfam05102, Holin_BlyA, holin, BlyA family. BlyA, a small holin
found in Borrelia circular plasmids that is encoded by a
prophage. BlyA contains two largely hydrophobic helices
and a highly charged C-terminus and is membrane
associated.
Length = 61
Score = 27.0 bits (60), Expect = 6.2
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I I ++ +I I +I ++I I I I+ + +I +I ++ I+I I
Sbjct: 4 ISINDFLLQLINIKLIKLMIFISIFILSLGLIFKPVIKDMLSILISKIK 52
>gnl|CDD|184078 PRK13481, PRK13481, glycosyltransferase; Provisional.
Length = 232
Score = 29.4 bits (66), Expect = 6.2
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIII 99
+K+SK I++ I++ I+III + I I+ +
Sbjct: 1 KKKSKRILLKILLTILIIIALFIGIMYFL 29
>gnl|CDD|177116 MTH00041, ND2, NADH dehydrogenase subunit 2; Validated.
Length = 349
Score = 29.5 bits (67), Expect = 6.5
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIIII 128
YIII I +I + + + + + I + I+ I+ + + I +
Sbjct: 208 YIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISL 267
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIF 153
+I I+I II+II ++ L F
Sbjct: 268 YCLIQNNSILISIILIIGSLLSLFF 292
>gnl|CDD|224220 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production
and conversion].
Length = 415
Score = 29.5 bits (67), Expect = 6.6
Identities = 14/62 (22%), Positives = 36/62 (58%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K+SK + + + ++I +I+ I++ + + + I + + I I +I +III ++ +++
Sbjct: 1 KKSKKLSLYLQVLIGLILGILVGLFLPELGAAIYLKPLGDIFIKLIKMIIIPLVFFTLVL 60
Query: 132 II 133
I
Sbjct: 61 GI 62
>gnl|CDD|233790 TIGR02227, sigpep_I_bact, signal peptidase I, bacterial type. This
model represents signal peptidase I from most bacteria.
Eukaryotic sequences are likely organellar. Several
bacteria have multiple paralogs, but these represent
isozymes of signal peptidase I. Virtually all known
bacteria may be presumed to A related model finds a
simlar protein in many archaea and a few bacteria, as
well as a microsomal (endoplasmic reticulum) protein in
eukaryotes [Protein fate, Protein and peptide secretion
and trafficking].
Length = 163
Score = 28.7 bits (65), Expect = 6.7
Identities = 4/26 (15%), Positives = 14/26 (53%)
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIID 150
+I+ ++I I++ ++I + +
Sbjct: 1 LILSLLIAILLALLIRTFVFFPYKVP 26
>gnl|CDD|236168 PRK08156, PRK08156, type III secretion system protein SpaS;
Validated.
Length = 361
Score = 29.6 bits (67), Expect = 6.9
Identities = 11/75 (14%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
++ +I+ + + I + I+ +I+I +++ +++ + +I++I+D
Sbjct: 138 LLYLIVFALTAYVFWKNYKKEIFSQLNGNIVGLIVIWRELLVKLVLTFLACALIVLILDF 197
Query: 152 IFDFTFMYLKEFRVE 166
I ++ F+++K+ +++
Sbjct: 198 IAEY-FLHMKDMKMD 211
>gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite
permeases [Inorganic ion transport and metabolism].
Length = 424
Score = 29.5 bits (67), Expect = 6.9
Identities = 10/79 (12%), Positives = 43/79 (54%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+++ + + I ++ ++I + ++ ++ + + I+ +++I I +I+++
Sbjct: 3 MLLALALFIFTLVYVLIRPRKLPRAWAALLGALLALFLGIVTPEDALVVIGIDWNVILLL 62
Query: 140 IIIIIIIIIIDLIFDFTFM 158
+ ++II++++D F ++
Sbjct: 63 LGMMIIVLLLDESGFFEWL 81
>gnl|CDD|233129 TIGR00796, livcs, branched-chain amino acid uptake carrier. The
Branched Chain Amino Acid:Cation Symporter (LIVCS)
Family (TC 2.A.26) Characterized members of this family
transport all three of the branched chain aliphatic
amino acids (leucine (L), isoleucine (I) and valine
(V)). They function by a Na+ or H+ symport mechanism and
display 12 putative transmembrane helical spanners
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 378
Score = 29.2 bits (66), Expect = 7.2
Identities = 16/89 (17%), Positives = 41/89 (46%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
E+ K + +I+ + I+ + + II I I +++II + I++I++
Sbjct: 290 TACSEYFHKLVPKLSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLS 349
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ + + I +I+ ++ I+D +
Sbjct: 350 FLRKLWDSKRAVYQITLIVALLFSILDGL 378
Score = 29.2 bits (66), Expect = 7.4
Identities = 15/69 (21%), Positives = 32/69 (46%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
+I+ + I+ + + II I I +++II + I++I++ + + + I L
Sbjct: 307 TWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQITL 366
Query: 152 IFDFTFMYL 160
I F L
Sbjct: 367 IVALLFSIL 375
>gnl|CDD|181090 PRK07718, fliL, flagellar basal body-associated protein FliL;
Reviewed.
Length = 142
Score = 28.4 bits (64), Expect = 7.3
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIII 99
++K I I++II+I+I +I +++++
Sbjct: 1 MKNKLIKIMLIILIVIALIGTAALVLVM 28
>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent
hydrolase [General function prediction only].
Length = 555
Score = 29.3 bits (66), Expect = 7.6
Identities = 5/100 (5%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIII 118
M R + + + +++ ++++ + + +I ++ ++ +++
Sbjct: 1 MNLTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLL 60
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
++++ ++ + ++ ++ +I D +
Sbjct: 61 LLLLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNML 100
>gnl|CDD|216188 pfam00916, Sulfate_transp, Sulfate transporter family. Mutations
in human SLC26A2 lead to several human diseases.
Length = 279
Score = 29.1 bits (66), Expect = 7.6
Identities = 9/47 (19%), Positives = 24/47 (51%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
++I + +I ++II ++ + + I ++ +I+ +I IF
Sbjct: 68 LVIGLSFLIFLLIIKLLPKRLKKLFWIPAPAPLVAVIVATVISYIFL 114
>gnl|CDD|223856 COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational
modification, protein turnover, chaperones].
Length = 220
Score = 28.8 bits (65), Expect = 7.6
Identities = 6/59 (10%), Positives = 28/59 (47%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
RK ++ ++ + +++ I + + + + + I I++I++ ++ + ++
Sbjct: 48 RKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLRYIAGILLILLGLLFLGVL 106
>gnl|CDD|214453 MTH00196, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 365
Score = 29.2 bits (66), Expect = 7.7
Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 22/98 (22%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIII----------------------IIIIIIIIII 118
I I++ I + + I++I + + + I ++ I I
Sbjct: 141 IFSILVSIGLNVNILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSF 200
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
I ++ + I II+ I + II+ + + +LI +F+
Sbjct: 201 ESIQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFS 238
>gnl|CDD|224183 COG1263, PtsG, Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific
[Carbohydrate transport and metabolism].
Length = 393
Score = 29.1 bits (66), Expect = 7.7
Identities = 6/44 (13%), Positives = 20/44 (45%)
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
+I ++I + ++ +++ +I ++I + +F F
Sbjct: 334 LIDFVLIFPLPLLGGNNLLVYVIGLVIAAVYYFVFTFLIGKFNL 377
>gnl|CDD|224372 COG1455, CelB, Phosphotransferase system cellobiose-specific
component IIC [Carbohydrate transport and metabolism].
Length = 432
Score = 29.5 bits (67), Expect = 7.8
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 23/105 (21%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIII---------------IIIIIIIIIIIIIIIII 118
K + III ++ + I ++ I I +I II+ I +I I
Sbjct: 137 GKGLFTAIIIALVTVEIYTFLVKRNITIKMPESVPPAVSKSFEALIPGFIILSIFGLINI 196
Query: 119 IIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIDLIFDF 155
++ I +I +I I + ++II ++ L++ F
Sbjct: 197 LLNSITGGNLITLIYTAIQAPLFGLGDSLPGVLIIAFLVSLLWFF 241
>gnl|CDD|222946 PHA02935, PHA02935, Hypothetical protein; Provisional.
Length = 349
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIII 101
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIII 102
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIII 103
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIII 104
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIII 105
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIII 106
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIII 107
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIII 108
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIII 109
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIII 110
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIII 111
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIII 112
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIII 113
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIII 114
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIII 115
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIII 116
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIII 117
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIII 118
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIII 119
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIII 120
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIII 121
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIII 122
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIII 123
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIII 124
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIII 125
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIII 126
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIII 127
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIII 128
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIII 129
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIII 130
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIII 131
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIII 132
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIII 133
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIII 134
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIII 135
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIII 136
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIII 137
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 114 IIIIIIIIIIIIIIIIIIIIIIIII 138
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 115 IIIIIIIIIIIIIIIIIIIIIIIII 139
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 116 IIIIIIIIIIIIIIIIIIIIIIIII 140
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 117 IIIIIIIIIIIIIIIIIIIIIIIII 141
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 118 IIIIIIIIIIIIIIIIIIIIIIIII 142
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 119 IIIIIIIIIIIIIIIIIIIIIIIII 143
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 120 IIIIIIIIIIIIIIIIIIIIIIIII 144
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIII 145
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIII 146
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIII 147
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIII 148
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
Score = 29.3 bits (65), Expect = 7.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIII 149
+I+I++I ++ IIIIII++I I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAM 337
>gnl|CDD|227810 COG5523, COG5523, Predicted integral membrane protein [Function
unknown].
Length = 271
Score = 29.0 bits (65), Expect = 8.0
Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
Query: 11 EISRLSGTPSIVCLSSNADLN----SMSISALKCIQSQLRGDLEKVDKILYLQTATKCMV 66
EIS SI + + L ++ + ++ C S R ++ KV+K
Sbjct: 32 EISGGGVLFSIPGVGLSVILFPLLGALILGSVWCSLSIARLEIPKVEK-------LFSGF 84
Query: 67 CEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
F Y++I I + +I + I II II+ + ++I + +++ +
Sbjct: 85 KNFGTTLVLYLLIKIFRFLWSLIAFVPIFIIFYSGSASKIILNLSASDVVIEVALMLFGL 144
Query: 127 IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFM 158
+I ++I+II+ I + + D + D ++
Sbjct: 145 RLIGLLILIILGYIASLAYYMAYDQLEDGGYL 176
>gnl|CDD|200119 TIGR01606, holin_BlyA, holin, BlyA family. This family represents
a BlyA, a small holin found in Borrelia circular
plasmids that prove to be temperate phage. This protein
was previously proposed to be an hemolysin. BlyA is
small (67 residues) and contains two largely hydrophobic
helices and a highly charged C-terminus [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 63
Score = 26.7 bits (59), Expect = 8.0
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
I I ++ +I I +I ++I I I I+ + +I +I ++ I+I I
Sbjct: 4 ISINDFLLQLINIKLIKLMIFISIFILSLGLIFKPVIKDMLSILISKIK 52
>gnl|CDD|206271 pfam14102, Caps_synth_CapC, Capsule biosynthesis CapC. This family
of proteins play a role in capsule biosynthesis. They
are essential for gamma-polyglutamic acid (PGA)
production.
Length = 121
Score = 27.9 bits (63), Expect = 8.1
Identities = 11/61 (18%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
I++ ++I I+ +I+ ++ I+ +++I +++ +++ +I+ F Y E
Sbjct: 37 ILVTLLISILTYLIVRLLSRFTILYGRRRFAAMLLIGVVLRLLLDGFVIYPFPPFYQYEL 96
Query: 164 R 164
R
Sbjct: 97 R 97
>gnl|CDD|220672 pfam10277, Frag1, Frag1/DRAM/Sfk1 family. This family includes
Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor
activating protein 1) is a protein that is conserved
from fungi to humans. There are four potential
iso-prenylation sites throughout the peptide, viz CILW,
CIIW and CIGL. Frag1 is a membrane-spanning protein that
is ubiquitously expressed in adult tissues suggesting an
important cellular function. Dram is a family of
proteins conserved from nematodes to humans with six
hydrophobic transmembrane regions and an Endoplasmic
Reticulum signal peptide. It is a lysosomal protein that
induces macro-autophagy as an effector of p53-mediated
death, where p53 is the tumour-suppressor gene that is
frequently mutated in cancer. Expression of Dram is
stress-induced. This region is also part of a family of
small plasma membrane proteins, referred to as Sfk1,
that may act together with or upstream of Stt4p to
generate normal levels of the essential phospholipid
PI4P, thus allowing proper localisation of Stt4p to the
actin cytoskeleton.
Length = 216
Score = 28.8 bits (65), Expect = 8.2
Identities = 16/133 (12%), Positives = 43/133 (32%), Gaps = 41/133 (30%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIIIIIII-- 118
+ + + I+ ++ II + + + I I+ + ++ +++ +
Sbjct: 84 SRSERVLNILALVFGIIGALGLGGVANFQSTEDHDVHDIGAILFFVGGLLYMLLQTALSY 143
Query: 119 ---------IIIIIIIIIIIIIIIIIIIIIIIIII------------------IIIIIDL 151
+ +I+ II I I + I I+ +
Sbjct: 144 RLGPTPVLRKSFRLKLILSIIAFISAIPFGVFFIQHNVHCGPGAYSLSAIFEWILAFSFI 203
Query: 152 IFDFTFMYLKEFR 164
+F TF + +F+
Sbjct: 204 LFFGTFAW--DFK 214
>gnl|CDD|114257 pfam05525, Branch_AA_trans, Branched-chain amino acid transport
protein. This family consists of several bacterial
branched-chain amino acid transport proteins which are
responsible for the transport of leucine, isoleucine and
valine via proton motive force.
Length = 428
Score = 29.1 bits (66), Expect = 8.3
Identities = 20/114 (17%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 58 LQTATKCMVC--EFVRKRS---KYIIIIIIIIIIIIII------IIIIIIIIIIIIIIII 106
L TA + E+ K Y + I +I ++ II I + ++++I I
Sbjct: 288 LTTAVGLITACSEYFSKLFPKLSYKKWVTIFTLISFLVANLGLTKIISISVPVLVLIYPI 347
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I++I++ + + ++ + I++ +II ++ + + I + + L
Sbjct: 348 AIVLIVLSLFRKLFPNSKVVYKLTILVTLIISLLDGLKALGIGIGVLNSLVHTL 401
>gnl|CDD|180519 PRK06298, PRK06298, type III secretion system protein; Validated.
Length = 356
Score = 29.0 bits (65), Expect = 8.4
Identities = 16/80 (20%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
I+ I +I+ I++ + +II + ++ I I+ + I I +++ ++DL
Sbjct: 144 ILKISGAALILYIVLKNRVPLIIETAGVPPLVTAQIFKEILYKAVTSIGIFFLVVAVLDL 203
Query: 152 IFD-FTF---MYLKEFRVEQ 167
++ F + +++F V+Q
Sbjct: 204 VYQRHNFAKELKMEKFEVKQ 223
>gnl|CDD|200375 TIGR04124, archaeo_artE, archaeosortase family protein ArtE. This
protein family is related to the predicted
protein-sorting transpeptidase Exosortase (EpsH), with
the Cys, Arg, and His putative active site residues
preserved, but it is strictly archaeal and is not
associated with any known PEP-CTERM-like target
sequence. The immediate gene neighborhood in most
genomes suggests RNA (methylase, cyclase) and cofactor
(thiamine pyrophosphate) metabolism. The function is
unknown. It is designated archaeosortase family protein
ArtE.
Length = 153
Score = 28.5 bits (64), Expect = 8.5
Identities = 14/67 (20%), Positives = 33/67 (49%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
K K +I + +++ II I++I + + + II I+I+ + +I++
Sbjct: 85 YSKSIKEFLIGLFFVLLAYFGNIIRIVLICYLANMYPENSELYHDIIGYIVILTLTVILV 144
Query: 130 IIIIIII 136
+I + +I
Sbjct: 145 LIYLKLI 151
>gnl|CDD|176990 CHL00049, ndhB, NADH dehydrogenase subunit 2.
Length = 494
Score = 29.2 bits (66), Expect = 8.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 137 IIIIIIIIIIIIIDLIFD 154
I+I +I++++IDL D
Sbjct: 20 CILIFGLILLLMIDLTSD 37
>gnl|CDD|221699 pfam12669, P12, Virus attachment protein p12 family. This family
of proteins are related to Virus attachment protein p12
from the African swine fever virus. The family appears
to contain an N-terminal signal peptide followed by a
short cysteine rich region. The cysteine rich region is
extremely variable and it is possible that only the
N-terminal region is homologous.
Length = 52
Score = 26.2 bits (58), Expect = 8.8
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 76 YIIIIIIIIIIIIIIIIIIII 96
III +II + ++I
Sbjct: 1 TIIIGLIIAAAVAYVLIRKFF 21
>gnl|CDD|233536 TIGR01695, mviN, integral membrane protein MviN. This model
represents MviN, a family of integral membrane proteins
predicted to have ten or more transmembrane regions.
Although frequently listed as a virulence protein, it is
not restricted to pathogens and it is an essential
protein in Sinorhizobium meliloti. In a number of
species its gene is adjacent to that of the
uridylyltransferase GlnD , the signal-transducing enzyme
that performs the key modification to the nitrogen
regulatory protein PII [Unknown function, General].
Length = 502
Score = 29.2 bits (66), Expect = 8.9
Identities = 10/71 (14%), Positives = 40/71 (56%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ +R K I+ ++ ++ ++I II ++ +I+ + + +++ ++ ++ I +I ++
Sbjct: 424 MLNRRLKGILPFGVLKVLAKLVIASAIIGGVLYLIVSVSLGGVLVKNLLGLLAIGLIGLL 483
Query: 129 IIIIIIIIIII 139
+ + + ++ I
Sbjct: 484 VYFLGLALLKI 494
Score = 29.2 bits (66), Expect = 9.7
Identities = 9/78 (11%), Positives = 40/78 (51%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
V ++ + I+ ++ ++ ++I II ++ +I+ + + +++ ++ ++
Sbjct: 417 SSVLLYLMLNRRLKGILPFGVLKVLAKLVIASAIIGGVLYLIVSVSLGGVLVKNLLGLLA 476
Query: 124 IIIIIIIIIIIIIIIIII 141
I +I +++ + + ++ I
Sbjct: 477 IGLIGLLVYFLGLALLKI 494
>gnl|CDD|172283 PRK13741, PRK13741, conjugal transfer entry exclusion protein TraS;
Provisional.
Length = 171
Score = 28.5 bits (64), Expect = 8.9
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
V F+ ++K+ I++ +III +I+ I+ + I + II I + I + II
Sbjct: 99 VIRFIYSKAKFYILVYLIIIFLIVSFGHSILYGFLSIALFIIFSFIYQVDIGRYQLSAII 158
Query: 126 III 128
+I
Sbjct: 159 SVI 161
>gnl|CDD|222062 pfam13349, DUF4097, Domain of unknown function (DUF4097).
Length = 166
Score = 28.5 bits (64), Expect = 9.2
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
I+II +++I+I I++ I F +
Sbjct: 3 ILIIGLVLIVIGGILLGIGFGAGGFKSVLFDNGFKI 38
>gnl|CDD|223674 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 317
Score = 29.0 bits (66), Expect = 9.2
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 111
KYII ++ I + I+ + ++ +I I+
Sbjct: 3 KYIIKRLLQAIPTLFIVSTLTFFLLRLIPGDPASAIL 39
>gnl|CDD|224598 COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 258
Score = 28.7 bits (65), Expect = 9.3
Identities = 9/69 (13%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 101 IIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
II +++++ + + ++ + + I + I + ++++ +I+ +I + + +F+
Sbjct: 189 IIALLLLVNLALGLLNRLAPQLNVFFIGFPLKIAVGLLLLYLILPLIAPVFKHLFSELFE 248
Query: 155 FTFMYLKEF 163
LK
Sbjct: 249 QLARLLKLL 257
>gnl|CDD|237462 PRK13665, PRK13665, hypothetical protein; Provisional.
Length = 316
Score = 29.1 bits (66), Expect = 9.3
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDL 151
+ +I +III ++III +I+ + + L
Sbjct: 2 MTLIGLIIIAVLIIIFLIVFFSFVPVGL 29
>gnl|CDD|215910 pfam00420, Oxidored_q2, NADH-ubiquinone/plastoquinone
oxidoreductase chain 4L.
Length = 96
Score = 27.1 bits (61), Expect = 9.3
Identities = 2/62 (3%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 76 YIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ I++ +I ++ +++ ++ +++ + ++++ + +++++ +++ + + + ++
Sbjct: 3 LFLSILLFLIGLLGLLLNRKHLLSVLLCLELMMLSLFLLLVLFSLLLADPLPQALPLTLL 62
Query: 132 II 133
+
Sbjct: 63 VF 64
>gnl|CDD|188526 TIGR04011, poly_gGlu_PgsC, poly-gamma-glutamate biosynthesis
protein PgsC/CapC. Of four genes commonly found to be
involved in biosynthesis and export of
poly-gamma-glutamate, pgsB(capB) and pgsC(capC) are
found to be involved in the synthesis per se. Members of
this family are designated PgsC, covering both cases in
which the poly-gamma-glutamate is secreted and those in
which it is retained to form capsular material. PgsC
binds tightly to PgsB, which has been shown to have
poly-gamma-glutamate activity [Cell envelope, Other].
Length = 132
Score = 28.0 bits (63), Expect = 9.4
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 115 IIIIIIIIIIIIIIIIIIIIIIII-----IIIIIIIIIIIDLIFDFTF 157
II+ I+I I+ +I+ +I I+ + II+ I++ + F F
Sbjct: 38 IIVTILISILTYLIVYVISKFTILYGRRKFVATIILSILLKTLVHFIF 85
>gnl|CDD|220280 pfam09529, Intg_mem_TP0381, Integral membrane protein
(intg_mem_TP0381). This entry represents a family of
hydrophobic proteins with seven predicted transmembrane
alpha helices. Members are found in Bacillus subtilis
(ywaF), TP0381 from Treponema pallidum (TP0381),
Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Length = 225
Score = 28.7 bits (65), Expect = 9.6
Identities = 8/51 (15%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 76 YIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIIIII 117
+I I+ + +++II+++++ + I I++++ I + + I
Sbjct: 11 HISILAVFVLLIILLVLLGRRQTERQKRLFRRIFAILLLLQEIALYLWYIY 61
>gnl|CDD|187765 cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the
Tellurite-resistance/Dicarboxylate Transporter (TDT)
family. This subfamily contains bacterial
C4-dicarboxylate transporters, which is part of the
Tellurite-resistance/Dicarboxylate Transporter (TDT)
family. It includes Tellurite resistance protein tehA;
the tehA gene encodes an integral membrane protein that
has been shown to have efflux activity of quaternary
ammonium compounds. TehA protein of Escherichia coli
functions as a tellurite-resistance uptake permease.
Length = 293
Score = 28.7 bits (65), Expect = 9.7
Identities = 19/105 (18%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIII 122
Y I+ I +I +I++I++++ II+ +I + + ++++ +
Sbjct: 22 LSYGSILRNICGLIALILLILLLLKIILFPKTLKEELKNPVIASVFPTFPMALMLLSTYL 81
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQ 167
+ ++ ++ II+ II+II FT+ + +F +E
Sbjct: 82 KPFFPALAQLLWLLAIILHIILIIY-------FTYKRILKFNLEH 119
>gnl|CDD|224713 COG1800, COG1800, Predicted transglutaminase-like proteases
[General function prediction only].
Length = 335
Score = 29.0 bits (65), Expect = 9.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 107
F K + III II I++ +I + III I +
Sbjct: 71 FCIKPAHKIIIREDDWIIKIVLFLIFPGLPAIIINIWSL 109
>gnl|CDD|222100 pfam13396, PLDc_N, Phospholipase_D-nuclease N-terminal. This
family is often found at the very N-terminus of proteins
from the phospholipase_D-nuclease family, PLDc,
pfam00614. However, a large number of members are
full-length within this family.
Length = 46
Score = 25.8 bits (58), Expect = 9.8
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 9/43 (20%)
Query: 120 IIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIDLIF 153
++I+ II +I II + +++I+ + I+ I+ L+F
Sbjct: 1 LLILWIIALIDIIRRERSPGAKLAWLLVILFLPILGPILYLLF 43
>gnl|CDD|211940 TIGR04217, archae_ser_T, archaetidylserine synthase. The activity
CDP-2,3-di-O-geranylgeranyl-sn-glycerol:L-serine
O-archaetidyltransferase (archaetidylserine synthase)
was demonstrated experimentally in Methanothermobacter
thermautotrophicus. Members represent an exception
within the broader family (TIGR00473) of
CDP-diacylglycerol-serine O-phosphatidyltransferases.
Length = 221
Score = 28.6 bits (64), Expect = 9.9
Identities = 14/83 (16%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 60 TATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIII 109
TA+ ++ ++ KYII+ +I+I+ +++ I++I + + I+ I +
Sbjct: 129 TASGVVLASYLLLGEKYIIVDVILILTLLLSILMISTHPYPKIRGPKALAFVAIVFGITV 188
Query: 110 IIIIIIIIIIIIIIIIIIIIIII 132
+ I++ + + I+ +++++
Sbjct: 189 LSYFILVEYMRVFSTILFLLMLL 211
>gnl|CDD|225751 COG3210, FhaB, Large exoproteins involved in heme utilization or
adhesion [Intracellular trafficking and secretion].
Length = 1013
Score = 29.3 bits (65), Expect = 9.9
Identities = 35/181 (19%), Positives = 55/181 (30%), Gaps = 10/181 (5%)
Query: 495 NGNNHSNDLELMMDSDSSASSSNSEASLGLDKAPGAQLTQARLTLVENHVNNAFNNNHAG 554
N +N + L + S+A + + AS G A + + +F + A
Sbjct: 742 ININAANSITLNGNGASTAETGDIGASGSNALQGGNITLLAGADDLLGLRDASFISTAAV 801
Query: 555 GGGTGLSEAASLTQARLTLVENHVNNAFNNNHAGGGGTGLSEAASDVIRKQ--LLAIESD 612
G T +EN ++ N G GG+ L +D
Sbjct: 802 SGNGKGGNININTTPIAGGLEN--SDIIANAVFGAGGSIDINTQGIFGSSGRNGLNPRAD 859
Query: 613 PLIDIHEKLQRKQALLQ--TVLNSTNSGSHHFGGPLESIVGGTSALSSNNFSPTTSSPLS 670
+ DI +Q T SG L + G TS L + + T S S
Sbjct: 860 GISDITAGSIETSGTVQINTPGVDPGSG----LVSLPANAGDTSQLIAGGCTGDTGSSSS 915
Query: 671 H 671
Sbjct: 916 S 916
>gnl|CDD|181085 PRK07691, PRK07691, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 496
Score = 29.1 bits (66), Expect = 9.9
Identities = 16/96 (16%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII----IIII-- 127
+ +I+ I+I +I I++I + II + +I ++ ++ II++ + I +
Sbjct: 3 NNLVILPILIPVITAILLIFLGKRPIIQRYVALIGSLLTLVAAIILVANVYKHGIQTLEL 62
Query: 128 --------IIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
I+ + + ++++ II + +++ F
Sbjct: 63 GNWKAPFGIVFVADMFAALLVLTSSIITFLVILYSF 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.417
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,067,377
Number of extensions: 3998938
Number of successful extensions: 83360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48457
Number of HSP's successfully gapped: 5364
Length of query: 711
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 607
Effective length of database: 6,324,786
Effective search space: 3839145102
Effective search space used: 3839145102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.0 bits)