RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3120
(711 letters)
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein;
NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Length = 77
Score = 61.9 bits (150), Expect = 2e-12
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 361 RSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHP--EIYKSTKCNDV 418
+ +Y++ C + E C G CQ+ H E + YK+ C+
Sbjct: 3 HMTTSSRYKTELCRT------YSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKF 56
Query: 419 QQAGYCPRGVFCAFAHVDTE 438
+ G CP G C F H TE
Sbjct: 57 KLQGRCPYGSRCHFIHNPTE 76
Score = 48.0 bits (114), Expect = 2e-07
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 213 CTKYDETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAF 272
C Y +G C G +C F H G+ + YKT +C H +G C G+ C F
Sbjct: 15 CRTY-SESGRCRYGAKCQFAH-GLGELRQANRHPKYKTELC-HKFKLQGRC-PYGSRCHF 70
Query: 273 AHG 275
H
Sbjct: 71 IHN 73
Score = 30.3 bits (68), Expect = 0.38
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 24/79 (30%)
Query: 163 FRVEQCPLFLQH-------KCT-QHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCT 214
++ E C + + KC H + + + C
Sbjct: 10 YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTEL---------------CH 54
Query: 215 KYDETTGLCPDGDECPFLH 233
K+ + G CP G C F+H
Sbjct: 55 KF-KLQGRCPYGSRCHFIH 72
Score = 30.3 bits (68), Expect = 0.38
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 248 YKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLRPPVYD 285
YKT +C + G C + GA C FAHG +LR
Sbjct: 10 YKTELCRTYS-ESGRC-RYGAKCQFAHGLGELRQANRH 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 5e-06
Identities = 113/605 (18%), Positives = 179/605 (29%), Gaps = 213/605 (35%)
Query: 169 PLFLQHKCTQHR---PFTCFHWHFMNQRRRRPVRKRDGSFNYS-PDTYCTKYDETTGLCP 224
PL L H +H P T + +Q + + FN P+ T G
Sbjct: 8 PLTLSHGSLEHVLLVP-TASFFIA-SQLQEQ--------FNKILPEP-------TEGFAA 50
Query: 225 DGDECP---------FLHRTAGDTER----------RYHLRYYKTCMCVHDTDARGLCVK 265
D DE P FL + E L ++ C + D
Sbjct: 51 D-DE-PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC-YLEGNDI------ 101
Query: 266 NGAHCAFAHGNPDLRPPVYDIKEI-------QALENPEGDPNSNSNGPNAL-----DKEG 313
H A + + KE+ + + D SNS AL +
Sbjct: 102 ---HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS----ALFRAVGEGNA 154
Query: 314 KLL--------TEDPKWQDTNYVLSN-YKTEQCKRPPRLCRQGYACPQFHNSRDKRRSPR 364
+L+ T+D +++ L + Y+T + + R + +
Sbjct: 155 QLVAIFGGQGNTDDY-FEE----LRDLYQTYHVLVGDLIKFSAETLSEL--IRTTLDAEK 207
Query: 365 TFKYRSTPCPNVKHG-D--EWGE-PANCESGD----------------LCQYCHTRTEQQ 404
F G + EW E P+N D L Y T
Sbjct: 208 VFT----------QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 405 FHP-EIYKSTKCNDVQQAGYCPRGVFCA--FAHVDTE---MANAREMAGGL---G----- 450
F P E+ K A +G+ A A D+ + R+ L G
Sbjct: 258 FTPGELRSYLKG-----ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 451 --PLDGTPGSGLSDILAG--GLPN-----SNLDEALLLMQQQQLMN---PRDEL----LC 494
P P S L D L G+P+ SNL + + + N P + L
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-NSHLPAGKQVEISLV 371
Query: 495 NG-NN-----HSNDLELMMDSDSSASSSNSEASLGLD--KAPGAQLTQARLTLVENH--- 543
NG N L + + + ++A GLD + P ++ R N
Sbjct: 372 NGAKNLVVSGPPQSLYGL-----NLTLRKAKAPSGLDQSRIPFSE----RKLKFSNRFLP 422
Query: 544 VNNAFNNNHAGGGGTGLSEAASLTQARLTLVENHVNNAFNNN------HAGGGGTGLSEA 597
V + F+++ L A+ L LV+N+V +FN + G+ L
Sbjct: 423 VASPFHSHL-------LVPASDLINKD--LVKNNV--SFNAKDIQIPVYDTFDGSDLRVL 471
Query: 598 ASDVIRKQLLAIESDPLIDIH-EKLQRKQALLQTVLNSTNSGSHH---FGGPLESIVGGT 653
+ + + + I P + E T + H F GP GG
Sbjct: 472 SGSISERIVDCIIRLP---VKWETT-------------TQFKATHILDF-GP-----GGA 509
Query: 654 SALSS 658
S L
Sbjct: 510 SGLGV 514
Score = 45.0 bits (106), Expect = 1e-04
Identities = 58/269 (21%), Positives = 89/269 (33%), Gaps = 95/269 (35%)
Query: 267 GAHCAFAHGNPDLRPPVYDIKEIQALENPEGDPNS-------------------NSNGPN 307
G C A+ N L P + + +LEN EG P+ NS+ P
Sbjct: 307 GVRCYEAYPNTSLPPSILE----DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP- 361
Query: 308 ALDKEGKL---LTEDPKWQDTNYVLSNYKTEQCKRPPR----LC---RQGYACPQFHNSR 357
++ L K N V+S PP+ L R+ A SR
Sbjct: 362 ---AGKQVEISLVNGAK----NLVVSG--------PPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 358 ---DKRRSPRTFKYR----STPCPNVKHGDEWGEPANCE-SGDLCQYCHTRTEQQFHPE- 408
+R+ + F R ++P H PA+ + DL + F+ +
Sbjct: 407 IPFSERK-LK-FSNRFLPVASPF----H-SHLLVPASDLINKDL-----VKNNVSFNAKD 454
Query: 409 ----IYKSTKCNDVQQAGYC--PRGVFCAF-AHVDTEMANAREM----------AGGLGP 451
+Y + +D++ R V C V E + A GLG
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514
Query: 452 L-----DGTPGSGLSDILAGGLPNSNLDE 475
L DGT G+ I+AG L + D+
Sbjct: 515 LTHRNKDGT---GVRVIVAGTLDINPDDD 540
Score = 35.4 bits (81), Expect = 0.086
Identities = 29/215 (13%), Positives = 60/215 (27%), Gaps = 65/215 (30%)
Query: 487 NPRDELLCNGNNHS-----NDLELMMDSDSSASSSNSEASLGLD--------KAPGAQL- 532
NP + + G N ++ ++ + ++ ++ L
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 533 ----TQARLTLVE------------NHVNNAFNNNHAG------------GGGTGLSEAA 564
TQ LTL+E + F AG +
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATF----AGHSLGEYAALASLADVMSIESLV 1783
Query: 565 SLTQARLTLVENHVNNAFNNNHAGGGGTGLSEAASDVIRKQLLAIESDPLIDIHEKLQRK 624
+ R ++ A + G G+ A + R + + L + E++ ++
Sbjct: 1784 EVVFYRGMTMQ----VAVPRDELGRSNYGM--IAINPGR-VAASFSQEALQYVVERVGKR 1836
Query: 625 QA-LLQTV-LNSTNSGSHHFGGPLESIVGGT-SAL 656
L++ V N N + + G AL
Sbjct: 1837 TGWLVEIVNYNVENQ---------QYVAAGDLRAL 1862
Score = 35.0 bits (80), Expect = 0.11
Identities = 27/170 (15%), Positives = 42/170 (24%), Gaps = 72/170 (42%)
Query: 162 EFRVEQCPLFLQHKCTQHR-PFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETT 220
R + P Q R PF R+ S + P
Sbjct: 392 TLRKAKAP----SGLDQSRIPF----------SERKLK----FSNRFLPVA--------- 424
Query: 221 GLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLR 280
PF H + + D + +F D++
Sbjct: 425 --------SPF------------HSHLLVPASDLINKDLVK------NNVSFNA--KDIQ 456
Query: 281 PPVYDI---KEIQALENPEGDPNSNSNGPNALDKEGKLLTEDP-KWQDTN 326
PVYD +++ L S S +D + P KW+ T
Sbjct: 457 IPVYDTFDGSDLRVL--------SGSISERIVD----CIIRLPVKWETTT 494
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4;
influenza A, nonstructural protein, viral protein: HOST
complex, Zn finger; 1.95A {Homo sapiens}
Length = 72
Score = 42.9 bits (101), Expect = 1e-05
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 15/68 (22%)
Query: 213 CTKYDETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAF 272
C + GLC GD+C FLH Y + C + G C + C F
Sbjct: 19 CKHWLR--GLCKKGDQCEFLH--------EYDMTKMSEC---YFYSKFGEC--SNKECPF 63
Query: 273 AHGNPDLR 280
H +P+ +
Sbjct: 64 LHIDPESK 71
Score = 37.1 bits (86), Expect = 0.001
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 19/86 (22%)
Query: 353 FHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIYKS 412
H+ S ++ C + G C+ GD C++ H ++ K
Sbjct: 3 HHHHHHSHMSGE----KTVVCKHWLRG-------LCKKGDQCEFLH-----EYDMT--KM 44
Query: 413 TKCNDVQQAGYCPRGVFCAFAHVDTE 438
++C + G C C F H+D E
Sbjct: 45 SECYFYSKFGECSNKE-CPFLHIDPE 69
Score = 29.4 bits (66), Expect = 0.70
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 244 HLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLRPPV 283
H+ KT +C H RGLC K G C F H +
Sbjct: 10 HMSGEKTVVCKHW--LRGLC-KKGDQCEFLHEYDMTKMSE 46
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit;
CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 77
Score = 42.6 bits (100), Expect = 2e-05
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 13/63 (20%)
Query: 221 GLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLR 280
GLC GD+C FLH D + +Y G C + C F H +P+ +
Sbjct: 19 GLCKKGDQCEFLHEY--DMTKMPECYFYSKF---------GEC--SNKECPFLHIDPESK 65
Query: 281 PPV 283
Sbjct: 66 IKD 68
Score = 38.7 bits (90), Expect = 4e-04
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 15/77 (19%)
Query: 362 SPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQA 421
S + ++ C + G C+ GD C++ H ++ K +C +
Sbjct: 2 SSGSSGEKTVVCKHWLRG-------LCKKGDQCEFLH-----EYDMT--KMPECYFYSKF 47
Query: 422 GYCPRGVFCAFAHVDTE 438
G C C F H+D E
Sbjct: 48 GECSNKE-CPFLHIDPE 63
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 46.4 bits (110), Expect = 2e-05
Identities = 12/74 (16%), Positives = 26/74 (35%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I I +II+ + + I + I++ I+I + I + + I
Sbjct: 128 ITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAI 187
Query: 145 IIIIIDLIFDFTFM 158
+ DF+ +
Sbjct: 188 EMDSKTFFPDFSKV 201
Score = 44.9 bits (106), Expect = 7e-05
Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 9/97 (9%)
Query: 76 YIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
I I ++ ++ + I+ I I +II+ + + I +
Sbjct: 99 IAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKV 158
Query: 127 IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
I++ I+I + I + F
Sbjct: 159 GFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFF 195
Score = 44.1 bits (104), Expect = 1e-04
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIII-----------IIIIIIIIIIIIIIIIIIIIIIIII 124
+ I I I ++ ++ + I+ I +II+ + +
Sbjct: 95 GYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTAR 154
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIII 149
I + I++ I+I + I +
Sbjct: 155 IAKVGFFAGILLPAFILIALAAIYL 179
Score = 44.1 bits (104), Expect = 2e-04
Identities = 8/55 (14%), Positives = 18/55 (32%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
I +II+ + + I + I++ I+I + I +
Sbjct: 126 DPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLH 180
Score = 39.5 bits (92), Expect = 0.004
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------I 130
+ I I I ++ ++ + I+ + I I +II+ + + I
Sbjct: 96 YLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARI 155
Query: 131 IIIIIIIIIIIIIIIIIIIDLIF 153
+ I++ I+I + I+
Sbjct: 156 AKVGFFAGILLPAFILIALAAIY 178
Score = 31.4 bits (71), Expect = 1.1
Identities = 11/112 (9%), Positives = 35/112 (31%), Gaps = 33/112 (29%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------IIIIIII 124
K + I + I++ I+I + I + + I + +++ +
Sbjct: 150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVA 209
Query: 125 II--------------------------IIIIIIIIIIIIIIIIIIIIIIID 150
I ++++++ I + + + I ++I
Sbjct: 210 FILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIP 261
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Length = 98
Score = 41.6 bits (97), Expect = 6e-05
Identities = 14/79 (17%), Positives = 17/79 (21%), Gaps = 19/79 (24%)
Query: 359 KRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPEIYKSTKCNDV 418
S + C G C + C Y H C
Sbjct: 2 SSGSSGELPKKRELCKFYITG-------FCARAENCPYMHGDFP------------CKLY 42
Query: 419 QQAGYCPRGVFCAFAHVDT 437
G C G C F+H
Sbjct: 43 HTTGNCINGDDCMFSHDPL 61
Score = 35.8 bits (82), Expect = 0.007
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 17/55 (30%)
Query: 220 TGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAH 274
TG C + CP++H + YH G C NG C F+H
Sbjct: 21 TGFCARAENCPYMHGD--FPCKLYHTT--------------GNC-INGDDCMFSH 58
Score = 33.1 bits (75), Expect = 0.051
Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 23/68 (33%)
Query: 166 EQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTGLCPD 225
E C ++ C R C + H D C K TTG C +
Sbjct: 14 ELCKFYITGFCA--RAENCPYMH--------------------GDFPC-KLYHTTGNCIN 50
Query: 226 GDECPFLH 233
GD+C F H
Sbjct: 51 GDDCMFSH 58
Score = 28.9 bits (64), Expect = 1.5
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 21/86 (24%)
Query: 330 SNYKTEQCKRPPR-LCRQGYACPQFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANC 388
K E CK C + CP H PC + NC
Sbjct: 9 LPKKRELCKFYITGFCARAENCPYMHGD--------------FPCKL------YHTTGNC 48
Query: 389 ESGDLCQYCHTRTEQQFHPEIYKSTK 414
+GD C + H ++ + K
Sbjct: 49 INGDDCMFSHDPLTEETRELLDKMLA 74
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, MGA family; 2.31A
{Enterococcus faecalis}
Length = 485
Score = 44.1 bits (104), Expect = 1e-04
Identities = 14/135 (10%), Positives = 34/135 (25%)
Query: 28 ADLNSMSISALKCIQSQLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIII 87
+ +S LK ++ L + L T T ++ R Y +++
Sbjct: 115 LSTSGVSYETLKRHIKKMNQALRDFHLTIQLTTMTIQLIGAESNIRIFYHRLLVPFTHNN 174
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I + + + + I I I +
Sbjct: 175 YFFDDYSIHEEHYFQFLKQVYSSELTVETEEIFGACWFFINTIRNKANCRVSQFSFDSKD 234
Query: 148 IIDLIFDFTFMYLKE 162
++ ++ + L
Sbjct: 235 VLFQLYQPSLAKLYA 249
Score = 40.7 bits (95), Expect = 0.001
Identities = 13/133 (9%), Positives = 32/133 (24%), Gaps = 5/133 (3%)
Query: 43 SQLRGDLEKVDKIL-----YLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIII 97
L+ ++K+++ L +Q T + + +++ I
Sbjct: 123 ETLKRHIKKMNQALRDFHLTIQLTTMTIQLIGAESNIRIFYHRLLVPFTHNNYFFDDYSI 182
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTF 157
+ + + + I I I + L +
Sbjct: 183 HEEHYFQFLKQVYSSELTVETEEIFGACWFFINTIRNKANCRVSQFSFDSKDVLFQLYQP 242
Query: 158 MYLKEFRVEQCPL 170
K + E L
Sbjct: 243 SLAKLYASEGIYL 255
Score = 40.3 bits (94), Expect = 0.002
Identities = 8/100 (8%), Positives = 24/100 (24%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
F + + + + I I I + +
Sbjct: 176 FFDDYSIHEEHYFQFLKQVYSSELTVETEEIFGACWFFINTIRNKANCRVSQFSFDSKDV 235
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQ 167
+ + + + I + + F F +L+ + +
Sbjct: 236 LFQLYQPSLAKLYASEGIYLQGEESFFAFFCFLESWNYDN 275
Score = 40.3 bits (94), Expect = 0.002
Identities = 9/98 (9%), Positives = 21/98 (21%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
F S + + + + + I I I +
Sbjct: 175 YFFDDYSIHEEHYFQFLKQVYSSELTVETEEIFGACWFFINTIRNKANCRVSQFSFDSKD 234
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
++ + + + I + F F E
Sbjct: 235 VLFQLYQPSLAKLYASEGIYLQGEESFFAFFCFLESWN 272
Score = 37.2 bits (86), Expect = 0.017
Identities = 7/99 (7%), Positives = 23/99 (23%), Gaps = 3/99 (3%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+F+++ + + I I I + ++ + + +
Sbjct: 189 QFLKQVYSSELTVETEEIFGACWFFINTIRNKANCRVSQFSFDSKDVLFQLYQPSLAKLY 248
Query: 128 IIIIIIII---IIIIIIIIIIIIIIDLIFDFTFMYLKEF 163
I + + D ++ T
Sbjct: 249 ASEGIYLQGEESFFAFFCFLESWNYDNVYGETLASALHT 287
Score = 36.1 bits (83), Expect = 0.040
Identities = 5/95 (5%), Positives = 22/95 (23%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ + + + + I I I + ++ + +
Sbjct: 186 HYFQFLKQVYSSELTVETEEIFGACWFFINTIRNKANCRVSQFSFDSKDVLFQLYQPSLA 245
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
+ I + +++ +Y +
Sbjct: 246 KLYASEGIYLQGEESFFAFFCFLESWNYDNVYGET 280
Score = 35.7 bits (82), Expect = 0.047
Identities = 8/107 (7%), Positives = 23/107 (21%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K+ + + I I I + ++ + + +
Sbjct: 192 KQVYSSELTVETEEIFGACWFFINTIRNKANCRVSQFSFDSKDVLFQLYQPSLAKLYASE 251
Query: 132 IIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQ 178
I + + +D + + L+ Q
Sbjct: 252 GIYLQGEESFFAFFCFLESWNYDNVYGETLASALHTHYSQLRKSLQQ 298
Score = 35.3 bits (81), Expect = 0.062
Identities = 5/121 (4%), Positives = 21/121 (17%)
Query: 37 ALKCIQSQLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIII 96
+ + D + + + I I I
Sbjct: 162 FYHRLLVPFTHNNYFFDDYSIHEEHYFQFLKQVYSSELTVETEEIFGACWFFINTIRNKA 221
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+ ++ + + + I + + ++ +
Sbjct: 222 NCRVSQFSFDSKDVLFQLYQPSLAKLYASEGIYLQGEESFFAFFCFLESWNYDNVYGETL 281
Query: 157 F 157
Sbjct: 282 A 282
Score = 34.9 bits (80), Expect = 0.10
Identities = 9/119 (7%), Positives = 24/119 (20%)
Query: 41 IQSQLRGDLEKVDKILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIII 100
+ D + + Y Q + E + + I I +
Sbjct: 171 THNNYFFDDYSIHEEHYFQFLKQVYSSELTVETEEIFGACWFFINTIRNKANCRVSQFSF 230
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
++ + + + I + + + L Y
Sbjct: 231 DSKDVLFQLYQPSLAKLYASEGIYLQGEESFFAFFCFLESWNYDNVYGETLASALHTHY 289
Score = 29.9 bits (67), Expect = 3.6
Identities = 9/91 (9%), Positives = 27/91 (29%), Gaps = 2/91 (2%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--IIIIIIIIII 122
E + S+Y I + + ++ I I + + +
Sbjct: 359 SNQELLEILSRYTTIEEPTYFLSLASLLEKQAIYSIQAQTMTAYFLFQGEPAWKAFLQQE 418
Query: 123 IIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ + + + I + + + + D+I
Sbjct: 419 LAAYLGTRVKLQAIEYVELSQLTLNEADIII 449
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 42.8 bits (101), Expect = 3e-04
Identities = 8/53 (15%), Positives = 25/53 (47%)
Query: 112 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFR 164
+++ + + + I II+++ ++ + I ++ I+ I F F ++
Sbjct: 220 LLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSV 272
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
transport, SGLT, ION TRAN membrane, sodium transport,
symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Length = 530
Score = 42.8 bits (101), Expect = 4e-04
Identities = 15/96 (15%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 68 EFVRKR-SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
EFV KR +K + I+ + I + I + + ++ + + + I+ I ++ I+ + + ++
Sbjct: 87 EFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALV 146
Query: 127 IIII----------IIIIIIIIIIIIIIIIIIIDLI 152
I +I + +++ + + + I
Sbjct: 147 YSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFI 182
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats,
LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus}
PDB: 2xq2_B 2kpe_A
Length = 593
Score = 41.7 bits (98), Expect = 8e-04
Identities = 15/96 (15%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 68 EFVRKR-SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
EFV KR +K + I+ + I + I + + ++ + + + I+ I ++ I+ + + ++
Sbjct: 116 EFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALV 175
Query: 127 IIII----------IIIIIIIIIIIIIIIIIIIDLI 152
I +I + +++ + + + I
Sbjct: 176 YSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFI 211
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Length = 315
Score = 38.7 bits (90), Expect = 0.005
Identities = 9/75 (12%), Positives = 27/75 (36%), Gaps = 17/75 (22%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------------IIIIIIIIIIIII 136
+I+ +++I++I I++ + + ++ + I+I
Sbjct: 40 QRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILI 99
Query: 137 IIIIIIIIIIIIIDL 151
II + ++ L
Sbjct: 100 IIFLAVLTWKTTHAL 114
Score = 38.3 bits (89), Expect = 0.006
Identities = 8/74 (10%), Positives = 26/74 (35%), Gaps = 17/74 (22%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------------IIIIIIIIIIIII 140
+I+ +++I++I I++ + + ++ + I+I
Sbjct: 40 QRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILI 99
Query: 141 IIIIIIIIIDLIFD 154
II + ++
Sbjct: 100 IIFLAVLTWKTTHA 113
Score = 38.3 bits (89), Expect = 0.007
Identities = 8/76 (10%), Positives = 28/76 (36%), Gaps = 17/76 (22%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------------IIIIIIIIIIIII 134
+I+ +++I++I I++ + + ++ + I+I
Sbjct: 40 QRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILI 99
Query: 135 IIIIIIIIIIIIIIID 150
II + ++ ++
Sbjct: 100 IIFLAVLTWKTTHALE 115
Score = 36.0 bits (83), Expect = 0.038
Identities = 10/73 (13%), Positives = 27/73 (36%), Gaps = 17/73 (23%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------------IIIIIIIIIIIII 144
+I+ +++I++I I++ + + ++ + I+I
Sbjct: 40 QRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILI 99
Query: 145 IIIIIDLIFDFTF 157
II + L + T
Sbjct: 100 IIFLAVLTWKTTH 112
Score = 35.2 bits (81), Expect = 0.053
Identities = 8/72 (11%), Positives = 25/72 (34%), Gaps = 17/72 (23%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----------------IIIIIIIIIIIII 148
+I+ +++I++I I++ + + ++ + I+I
Sbjct: 40 QRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILI 99
Query: 149 IDLIFDFTFMYL 160
I + T+
Sbjct: 100 IIFLAVLTWKTT 111
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell
juncti cytoplasmic vesicle, membrane, phosphoprotein;
HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Length = 109
Score = 34.0 bits (78), Expect = 0.031
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIII 98
+ R K I+III +I+ III I I
Sbjct: 81 KARRKKIMIIICCVILGIIIASTIGGIF 108
Score = 33.6 bits (77), Expect = 0.041
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIII 99
K + I+III +I+ III I I
Sbjct: 80 SKARRKKIMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 82 IIIIIIIIIIIIIIIIIIIIII 103
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 83 IIIIIIIIIIIIIIIIIIIIII 104
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 84 IIIIIIIIIIIIIIIIIIIIII 105
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 85 IIIIIIIIIIIIIIIIIIIIII 106
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 86 IIIIIIIIIIIIIIIIIIIIII 107
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 87 IIIIIIIIIIIIIIIIIIIIII 108
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 88 IIIIIIIIIIIIIIIIIIIIII 109
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 89 IIIIIIIIIIIIIIIIIIIIII 110
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 90 IIIIIIIIIIIIIIIIIIIIII 111
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 91 IIIIIIIIIIIIIIIIIIIIII 112
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 92 IIIIIIIIIIIIIIIIIIIIII 113
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 93 IIIIIIIIIIIIIIIIIIIIII 114
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 94 IIIIIIIIIIIIIIIIIIIIII 115
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 95 IIIIIIIIIIIIIIIIIIIIII 116
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 96 IIIIIIIIIIIIIIIIIIIIII 117
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 97 IIIIIIIIIIIIIIIIIIIIII 118
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 98 IIIIIIIIIIIIIIIIIIIIII 119
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 99 IIIIIIIIIIIIIIIIIIIIII 120
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 100 IIIIIIIIIIIIIIIIIIIIII 121
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 101 IIIIIIIIIIIIIIIIIIIIII 122
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 102 IIIIIIIIIIIIIIIIIIIIII 123
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 103 IIIIIIIIIIIIIIIIIIIIII 124
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 104 IIIIIIIIIIIIIIIIIIIIII 125
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 105 IIIIIIIIIIIIIIIIIIIIII 126
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 106 IIIIIIIIIIIIIIIIIIIIII 127
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 107 IIIIIIIIIIIIIIIIIIIIII 128
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 108 IIIIIIIIIIIIIIIIIIIIII 129
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 109 IIIIIIIIIIIIIIIIIIIIII 130
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 110 IIIIIIIIIIIIIIIIIIIIII 131
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 111 IIIIIIIIIIIIIIIIIIIIII 132
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 112 IIIIIIIIIIIIIIIIIIIIII 133
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 113 IIIIIIIIIIIIIIIIIIIIII 134
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 114 IIIIIIIIIIIIIIIIIIIIII 135
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 115 IIIIIIIIIIIIIIIIIIIIII 136
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 116 IIIIIIIIIIIIIIIIIIIIII 137
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 117 IIIIIIIIIIIIIIIIIIIIII 138
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 118 IIIIIIIIIIIIIIIIIIIIII 139
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 119 IIIIIIIIIIIIIIIIIIIIII 140
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 120 IIIIIIIIIIIIIIIIIIIIII 141
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 121 IIIIIIIIIIIIIIIIIIIIII 142
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 122 IIIIIIIIIIIIIIIIIIIIII 143
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 123 IIIIIIIIIIIIIIIIIIIIII 144
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 124 IIIIIIIIIIIIIIIIIIIIII 145
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 125 IIIIIIIIIIIIIIIIIIIIII 146
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 126 IIIIIIIIIIIIIIIIIIIIII 147
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 127 IIIIIIIIIIIIIIIIIIIIII 148
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 128 IIIIIIIIIIIIIIIIIIIIII 149
I+III +I+ III I I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 29.0 bits (65), Expect = 2.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 132 IIIIIIIIIIIIIIIIIIDLIF 153
I+III +I+ III I IF
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
Score = 28.2 bits (63), Expect = 3.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 130 IIIIIIIIIIIIIIIIIIIIDL 151
I+III +I+ III I
Sbjct: 87 IMIIICCVILGIIIASTIGGIF 108
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 36.4 bits (85), Expect = 0.032
Identities = 8/80 (10%), Positives = 37/80 (46%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ + +I++ + + + I+ ++ +I I ++ + ++ ++I+ I + +
Sbjct: 33 RPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSL 92
Query: 132 IIIIIIIIIIIIIIIIIIDL 151
+ + I++ + ++ L
Sbjct: 93 LFWLQGKIMLTLSQDVVFRL 112
Score = 34.8 bits (81), Expect = 0.11
Identities = 8/75 (10%), Positives = 36/75 (48%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
++R + +I++ + + + I+ ++ +I I ++ + ++ ++I+ I +
Sbjct: 31 YLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALT 90
Query: 129 IIIIIIIIIIIIIII 143
++ + I++ +
Sbjct: 91 SLLFWLQGKIMLTLS 105
Score = 34.5 bits (80), Expect = 0.14
Identities = 6/64 (9%), Positives = 28/64 (43%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+I++ + + + I+ ++ +I I ++ + ++ ++I+ I + + +
Sbjct: 37 FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWL 96
Query: 157 FMYL 160
+
Sbjct: 97 QGKI 100
Score = 34.5 bits (80), Expect = 0.15
Identities = 9/75 (12%), Positives = 36/75 (48%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+I++ + + + I+ ++ +I I ++ + ++ ++I+ I + ++ +
Sbjct: 37 FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWL 96
Query: 140 IIIIIIIIIIDLIFD 154
I++ + D++F
Sbjct: 97 QGKIMLTLSQDVVFR 111
Score = 31.4 bits (72), Expect = 1.1
Identities = 10/74 (13%), Positives = 34/74 (45%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+I++ + + + I+ ++ +I I ++ + ++ ++I+ I + ++ +
Sbjct: 37 FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWL 96
Query: 144 IIIIIIDLIFDFTF 157
I++ L D F
Sbjct: 97 QGKIMLTLSQDVVF 110
Score = 29.8 bits (68), Expect = 3.5
Identities = 8/79 (10%), Positives = 34/79 (43%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+I++ + + + I+ ++ +I I ++ + ++ ++I+ I + ++ +
Sbjct: 37 FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWL 96
Query: 148 IIDLIFDFTFMYLKEFRVE 166
++ + + R E
Sbjct: 97 QGKIMLTLSQDVVFRLRKE 115
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell
membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
3ncy_A
Length = 445
Score = 36.2 bits (84), Expect = 0.036
Identities = 11/79 (13%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-----IIIII 130
Y + I I +++I + + I+ ++ I ++++ I +++ I+ +
Sbjct: 93 YWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQA 152
Query: 131 IIIIIIIIIIIIIIIIIII 149
+ ++ +I I+ I +
Sbjct: 153 VATVLALIPIVGIAVFGWF 171
Score = 34.6 bits (80), Expect = 0.11
Identities = 6/51 (11%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 83 IIIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIII 127
++ I ++++ I +++ I+ + + ++ +I I+ I +
Sbjct: 123 WVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWF 173
Score = 33.9 bits (78), Expect = 0.19
Identities = 6/50 (12%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 76 YIIIIIIIIIIIIIIIIII------IIIIIIIIIIIIIIIIIIIIIIIII 119
+ I ++++ I +++ I+ + + ++ +I I+ I +
Sbjct: 124 VLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWF 173
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 34.5 bits (80), Expect = 0.069
Identities = 10/93 (10%), Positives = 38/93 (40%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ Y+ + I ++ ++ +I + + + ++ ++ + I++II +
Sbjct: 63 SGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLS 122
Query: 130 IIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKE 162
I I + +++ +++ +Y+ E
Sbjct: 123 AIADAADKIRFYHLFGAVMLTVLYGAFAIYIVE 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.076
Identities = 43/278 (15%), Positives = 71/278 (25%), Gaps = 80/278 (28%)
Query: 389 ESGDLCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTEMANAREMAGG 448
E+G+ QY + F + C DVQ P+ + + E
Sbjct: 10 ETGEH-QYQYKDILSVFEDAFVDNFDCKDVQDM---PKSIL-----------SKEE---- 50
Query: 449 LGPLDGTPGSGLSDILAGGLPNSNLDEALLLMQQQQLMNPRDELLCNGNNHSND-LELMM 507
+ I+ + + L L LL +E ++
Sbjct: 51 -----------IDHII--MSKD-AVSGTLRLF---------WTLLSKQEEMVQKFVEEVL 87
Query: 508 DSDSS--ASSSNSEASLGLDKAPGAQLTQARLTLVENHVNNAFNNNHAGGGGTGLSEAAS 565
+ S +E + P + + +N+N A
Sbjct: 88 RINYKFLMSPIKTE-----QRQP-----SMMTRMYIEQRDRLYNDNQ---------VFAK 128
Query: 566 LTQARLTLVENHVNNAFNNNHA------GGGGTGLSEAASDVIRKQLLAIESDPLI---- 615
+RL A G G+G + A DV + + D I
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 616 -----DIHEKLQRKQALL-QTVLNSTNSGSHHFGGPLE 647
L+ Q LL Q N T+ H L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Score = 33.7 bits (76), Expect = 0.25
Identities = 38/187 (20%), Positives = 60/187 (32%), Gaps = 53/187 (28%)
Query: 398 HTRTEQQFHP-EIYKSTK---CNDVQQAGYCPRGVFCAFAHV--DTEMANAREMAGGLGP 451
T Q +Y + ND Q + +V R+ L P
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKY-------NVSRLQPYLKLRQALLELRP 149
Query: 452 -----LDGTPGSGLSDILAG-------------------GLPNSNLDEALLLMQQQQLMN 487
+DG GSG + +A L N N E +L Q+L+
Sbjct: 150 AKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-EMLQKLLY 207
Query: 488 PRDELLCNGNNHSNDLELMMDSDSSASSSNSEASLGLDKAPGAQLTQARLTL--VEN-HV 544
D + ++HS++++L + S + L K L L V+N
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELR-----RLLKSK----PYENCLLVLLNVQNAKA 258
Query: 545 NNAFNNN 551
NAFN +
Sbjct: 259 WNAFNLS 265
Score = 30.6 bits (68), Expect = 2.4
Identities = 25/159 (15%), Positives = 39/159 (24%), Gaps = 55/159 (34%)
Query: 150 DLIFDFTFMYLKEFRVEQCPLFLQH------KCTQHRPFTCFH-----WHFMNQRRRRPV 198
DLI + Y F H T F + F+ Q+ R
Sbjct: 463 DLIPPYLDQY-----------FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH-- 509
Query: 199 RKRDGSFNYSPDTYCTKYDETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTD 258
++T G L + L++YK +C +D
Sbjct: 510 -------------------DSTAWNASGSILNTLQQ----------LKFYKPYICDNDPK 540
Query: 259 ARGLCVKNGAHCAFAHGNPDLRPPVYDIKEIQALENPEG 297
L V + D+ I AL +
Sbjct: 541 YERL-VNAILDFLPKIEENLICSKYTDLLRI-ALMAEDE 577
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 35.4 bits (82), Expect = 0.081
Identities = 9/57 (15%), Positives = 23/57 (40%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+K SK + + + + ++ + I+ I + + II +++I I
Sbjct: 53 KKESKLLKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 34.6 bits (80), Expect = 0.12
Identities = 7/55 (12%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 113 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQ 167
+ ++ + I+ I + + II +++I+ F ++E
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISF----IEENNAGN 119
Score = 34.2 bits (79), Expect = 0.16
Identities = 7/61 (11%), Positives = 23/61 (37%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+ K+ ++ + + + ++ + I+ I + + II +++I
Sbjct: 49 KLEEKKESKLLKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINST 108
Query: 128 I 128
I
Sbjct: 109 I 109
Score = 34.2 bits (79), Expect = 0.20
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
+ ++ + I+ I + + II +++I I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFI 112
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
Score = 33.0 bits (76), Expect = 0.34
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ ++ + I+ I + + II +++I I
Sbjct: 69 LSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTI 109
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative
splicing, metal- binding, nucleus, RNA-binding, zinc,
zinc-finger, metal binding; 1.50A {Homo sapiens} PDB:
3d2s_A
Length = 70
Score = 31.9 bits (72), Expect = 0.088
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 387 NCESGDL-CQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAH 434
NC G+ C++ H T C D + C R C + H
Sbjct: 16 NCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGR-CSREK-CKYFH 62
Score = 26.9 bits (59), Expect = 5.1
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 260 RGLCVKNGAHCAFAHGNPDLRPPVYDIK 287
RG C + C FAH D
Sbjct: 14 RGNCNRGENDCRFAHPADSTMIDTNDNT 41
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform
1, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 32.2 bits (72), Expect = 0.11
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 387 NCESGDL-CQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRGVFCAFAH 434
NC G+ C++ H T C D + C R C + H
Sbjct: 30 NCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGR-CMREK-CKYFH 76
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH
LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Length = 332
Score = 33.9 bits (78), Expect = 0.15
Identities = 10/84 (11%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ + I +++ I+ ++++ I++ +I+ ++ + + ++ + I++II ++
Sbjct: 157 GEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVV 216
Query: 134 I-----IIIIIIIIIIIIIIIDLI 152
I+ ++I ++++ + I
Sbjct: 217 GASKGKIMESGLLIFAVVVLHNGI 240
Score = 30.4 bits (69), Expect = 1.7
Identities = 8/61 (13%), Positives = 26/61 (42%)
Query: 69 FVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
V K + + ++ + I++II ++ I+ ++I ++++ I +
Sbjct: 184 IVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYL 243
Query: 129 I 129
+
Sbjct: 244 L 244
>2xut_A Proton/peptide symporter family protein; transport protein,
membrane protein, major facilitator super transporter;
3.62A {Shewanella oneidensis}
Length = 524
Score = 33.9 bits (78), Expect = 0.18
Identities = 6/89 (6%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ + + I +++ +I + ++ I + I+ + +++++ + + +
Sbjct: 223 LLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLER 282
Query: 130 IIIIIIIIII-----IIIIIIIIIIDLIF 153
+ ++ I+++ + F
Sbjct: 283 ARKSHPDAAVDGVRSVLRILVLFALVTPF 311
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 32.9 bits (75), Expect = 0.37
Identities = 16/135 (11%), Positives = 48/135 (35%), Gaps = 11/135 (8%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIIIIIII 121
RK Y+I I ++I + + + I +++ + +++ +
Sbjct: 208 RKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETA 267
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRP 181
+ + +I ++ I+ ++ +++ I+++ F + Q K
Sbjct: 268 LAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRTPSTHSGIDSTNYI--VKQIKEKNAYD 325
Query: 182 FTCFHWHFMNQRRRR 196
+W+ + Q R
Sbjct: 326 EEVGNWNLVGQTIDR 340
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein;
1.80A {Rattus norvegicus}
Length = 229
Score = 32.4 bits (73), Expect = 0.39
Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 19/85 (22%)
Query: 168 CPLFLQHKC--TQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCT----------- 214
C L L +C Q + C + H + + + K + +
Sbjct: 92 CKLNLLGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLP 151
Query: 215 ------KYDETTGLCPDGDECPFLH 233
K + C C LH
Sbjct: 152 EICKSYKGEGRKQTCGQPQPCERLH 176
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 32.7 bits (75), Expect = 0.41
Identities = 7/53 (13%), Positives = 22/53 (41%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
+YI + +++++ I I+ + I II + + + ++ +
Sbjct: 453 RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAE 505
Score = 32.4 bits (74), Expect = 0.57
Identities = 11/120 (9%), Positives = 36/120 (30%), Gaps = 18/120 (15%)
Query: 58 LQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 117
+Q + E R ++ I+ +++ + + + I ++ +
Sbjct: 360 MQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTE 419
Query: 118 IIII------------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMY 159
+II I + I ++ I + +++++ + I
Sbjct: 420 LIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEET 479
Score = 30.8 bits (70), Expect = 1.5
Identities = 7/63 (11%), Positives = 24/63 (38%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
K + ++ I + +++++ I I+ + I II + + + ++
Sbjct: 443 KVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVF 502
Query: 132 III 134
+
Sbjct: 503 LAE 505
Score = 30.0 bits (68), Expect = 2.9
Identities = 9/71 (12%), Positives = 26/71 (36%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
E R + I ++ I + +++++ I I+ + I II +
Sbjct: 435 EINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLF 494
Query: 128 IIIIIIIIIII 138
+ + ++ +
Sbjct: 495 LFLTFLVFLAE 505
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
I ++ I + +++++ I I+ + I II + + + ++ +
Sbjct: 447 IYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAE 505
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I ++ I + +++++ I I+ + I II + + + ++ +
Sbjct: 447 IYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAE 505
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
I ++ I + +++++ I I+ + I II + + + ++ +
Sbjct: 447 IYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAE 505
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I ++ I + +++++ I I+ + I II + + + ++ +
Sbjct: 447 IYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAE 505
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
I ++ I + +++++ I I+ + I II + + + ++ +
Sbjct: 447 IYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAE 505
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I ++ I + +++++ I I+ + I II + + + ++ +
Sbjct: 447 IYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAE 505
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I ++ I + +++++ I I+ + I II + + + ++ +
Sbjct: 447 IYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAE 505
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I ++ I + +++++ I I+ + I II + + + ++ +
Sbjct: 447 IYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAE 505
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
I ++ I + +++++ I I+ + I II + + + ++ +
Sbjct: 447 IYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAE 505
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
I ++ I + +++++ I I+ + I II + + + ++ +
Sbjct: 447 IYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAE 505
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
I ++ I + +++++ I I+ + I II + + + ++ +
Sbjct: 447 IYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAE 505
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.41
Identities = 4/18 (22%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 195 RRPVRKRDGSFN-YSPDT 211
++ ++K S Y+ D+
Sbjct: 19 KQALKKLQASLKLYADDS 36
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL
HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Length = 337
Score = 32.4 bits (74), Expect = 0.42
Identities = 6/72 (8%), Positives = 23/72 (31%), Gaps = 20/72 (27%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIII--------------------IIIIIIIIIIII 148
+ + + +I +++ + + + ++ +I + I
Sbjct: 35 VAFLFPWVYFFSFLIFLVVAGSLAYVTWKFRARPEDQEEPPQIHGNDRLEVVWTLIPLAI 94
Query: 149 IDLIFDFTFMYL 160
+ ++F T L
Sbjct: 95 VFVLFGLTAKAL 106
>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron
transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str}
Length = 556
Score = 32.9 bits (72), Expect = 0.45
Identities = 29/241 (12%), Positives = 54/241 (22%), Gaps = 22/241 (9%)
Query: 168 CPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTGLCPDGD 227
P+ HK + TC H + +G + + +
Sbjct: 300 KPVAFNHKVHEAASNTCRACHHVKIDNCTTCHTLEGVKDGNFVQIEKAMHQPD----SMK 355
Query: 228 ECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLRPPVYDIK 287
C H C H G + A C H +P D K
Sbjct: 356 SCVGCHNQKVQA---------PACAGCHGFMKTGAKPQPEAACGVCHADP----VGMDAK 402
Query: 288 EIQALENPEGDPNSNSNGPNALDKEGKLLTEDPKWQDTNYVLSNYKTEQCKRPPRLCRQG 347
+ + ++ A + D ++ P +L +
Sbjct: 403 TVADGGLLKATKEQRADVAAATLAARRTTKGTLPADDIPEFVTIGVLSDKYEPSKLPHRK 462
Query: 348 YACPQFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHP 407
D + + ++T C H + C CH +
Sbjct: 463 IVNTLMAAIGDDKLAGTFHTDKATVCAGCHHNSPASKTPP-----KCASCHGQPFDAAKG 517
Query: 408 E 408
+
Sbjct: 518 D 518
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 32.5 bits (72), Expect = 0.51
Identities = 29/240 (12%), Positives = 53/240 (22%), Gaps = 19/240 (7%)
Query: 174 HKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPD-TYC-----TKYDETTGLCPDGD 227
+ + C H ++ + +D + C + + +
Sbjct: 135 GEKETLKEVGCIDCHVDVNKKDKADHTKDIRMPTADTCGTCHLREFAERESERDTMVWPN 194
Query: 228 ECPFLHRTAG--DTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLRPPVYD 285
R + D + T + +C N C H +
Sbjct: 195 GQWPAGRPSHALDYTANIETTVWATMPQREVAEGCTMCHTNQNKCDNCHTRHEFSAAESR 254
Query: 286 IKEI-QALENPEGDPNSNSNGPNALDKEGKLLTEDPKW---QDTNYVLSNYKTEQCKRPP 341
E + N + + K ++ + W + C
Sbjct: 255 KPEACATCHSGVDHNNWEAYTMSKHGKLAEMNRDKWNWEVRLKDAFSKGGQNAPTCAA-- 312
Query: 342 RLCRQGYACPQFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRT 401
C Y HN K R Y P +W E C CH+
Sbjct: 313 --CHMEYEGEYTHNITRKTR---WANYPFVPGIAENITSDWSEARLDSWVLTCTQCHSER 367
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 32.1 bits (73), Expect = 0.64
Identities = 20/135 (14%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIIIIIII 121
RK YI+ I+ I+I I+ I++ + + I ++ + + ++++ +
Sbjct: 206 RKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETS 265
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRP 181
+ + III ++ I+I++ +I+ +++++L + ++ + Q +
Sbjct: 266 LSVPIIISYLMFIMILVAFSVILSVVVLNLHHRSPNTHEAVEAIKY--IAEQLESASEFD 323
Query: 182 FTCFHWHFMNQRRRR 196
W ++ R
Sbjct: 324 DLKKDWQYVAMVADR 338
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 32.0 bits (72), Expect = 0.75
Identities = 26/211 (12%), Positives = 70/211 (33%), Gaps = 32/211 (15%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIII---- 119
RK YI+ I+ I+I I+ I++ + + + I ++ + + ++++ +
Sbjct: 239 RKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETS 298
Query: 120 ----IIIIIIIIIIIIIIIIIIIIIIIIII---------------IIIIDLIFDFTFM-- 158
III ++ I+I++ +I+ ++++ + I I+ + F ++
Sbjct: 299 LSVPIIISYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQR 358
Query: 159 YLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDE 218
+ + P + ++ R + + F+
Sbjct: 359 PVTTPSPDSKPTIISRANDEYFIRKPAGDFVCPVDNARVAVQPERLFSEMKWHLNGLTQP 418
Query: 219 TTGLCPDGDECPFLHRTAGDTERRYHLRYYK 249
T + + A E K
Sbjct: 419 VTLPQDLKEAVEAIKYIAEQLESASEFDDLK 449
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A
{Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Length = 240
Score = 31.3 bits (70), Expect = 0.79
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 208 SPDTYCTKYDETTGLCPDGDECPFLHR 234
+C + + G+C G +C +LH
Sbjct: 68 GQLFFCLFFAK--GMCCLGPKCEYLHH 92
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane
protein; NMR {Aeropyrum pernix}
Length = 147
Score = 30.7 bits (69), Expect = 0.87
Identities = 10/108 (9%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 70 VRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
+ R + I ++ ++ + + ++ +I++++ + + ++ + ++ +I++II+
Sbjct: 7 LGGRVRNIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILW 66
Query: 130 IIIIIIII------------IIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
+ I ++ + + + L FR+
Sbjct: 67 ADYAYRAYKSGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRL 114
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC
micelle, snare, coiled coil, membrane fusion,
transmembrane; NMR {Rattus norvegicus}
Length = 119
Score = 29.3 bits (65), Expect = 1.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIII 95
K K +II+ +I II+IIII+
Sbjct: 94 KNLKMMIILGVICAIILIIIIVYF 117
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein,
transporter, enzyme IIC, phosphoenolpyruva
phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A
{Bacillus cereus}
Length = 442
Score = 30.8 bits (70), Expect = 1.6
Identities = 9/61 (14%), Positives = 29/61 (47%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+I I++ ++ II +I I ++ ++ + I+ + +I +I++ +++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILVHVLWA 246
Query: 155 F 155
Sbjct: 247 C 247
Score = 30.4 bits (69), Expect = 2.4
Identities = 9/61 (14%), Positives = 28/61 (45%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++ +I I++ ++ II +I I ++ ++ + I+ + +I +I+
Sbjct: 181 TRSFAALIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVIL 240
Query: 134 I 134
+
Sbjct: 241 V 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+I I++ ++ II +I I ++ ++ + I+ + +I +I++
Sbjct: 187 LIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVILV 241
Score = 29.2 bits (66), Expect = 4.9
Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIII-------------IIIIIIIIIIIIIIIIIIIIII 126
+ + +II II I ++ +II +I I++ ++ II +I
Sbjct: 146 LFVAMIIAIISTEIYRFLVQKKMIIKMPETVPPAVTRSFAALIPGFIVVTVVWIIRLIFE 205
Query: 127 IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
I ++ ++ + I+ ++ +
Sbjct: 206 HTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVI 239
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex
(hydrolase- immunoglobulin) complex; HET: NAG BMA MAN;
2.20A {Influenza a virus} SCOP: b.68.1.1
Length = 470
Score = 30.4 bits (68), Expect = 2.1
Identities = 11/80 (13%), Positives = 24/80 (30%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
I+ ++I I ++I I+ + + I + + II
Sbjct: 7 ILCTSATALVIGTIAVLIGIVNLGLNIGLHLKPSCNCSRSQPEATNASQTIINNYYNETN 66
Query: 141 IIIIIIIIIDLIFDFTFMYL 160
I I I + + +
Sbjct: 67 ITQISNTNIQVEERASREFN 86
>3hd7_A Vesicle-associated membrane protein 2; membrane protein,
coiled-coil, 4-helical bundle, cell juncti cytoplasmic
vesicle, membrane, phosphoprotein; HET: GGG; 3.40A
{Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Length = 91
Score = 28.3 bits (63), Expect = 2.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIII 94
K K +II+ +I II+IIII+
Sbjct: 66 KNLKMMIILGVICAIILIIIIVY 88
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 30.2 bits (68), Expect = 2.4
Identities = 15/93 (16%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIIIIIIIIIIIII 120
RK YII II ++I +++++ + I +++ I + +I +
Sbjct: 209 RKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPET 268
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ + +I +I ++ + ++I+ +I++++
Sbjct: 269 SLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSL 301
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 29.8 bits (67), Expect = 3.1
Identities = 12/88 (13%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIII---- 119
R +++ +II ++ + +++ + + + I +++ + + +++I+ +I
Sbjct: 209 RIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTS 268
Query: 120 ----IIIIIIIIIIIIIIIIIIIIIIII 143
+I ++ +I +I II+ +++I
Sbjct: 269 SAVPLIGKYMLFTMIFVISSIIVTVVVI 296
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer
membrane, electron trans; HET: HEC; 3.20A {Shewanella
oneidensis}
Length = 669
Score = 29.8 bits (65), Expect = 3.2
Identities = 36/266 (13%), Positives = 66/266 (24%), Gaps = 30/266 (11%)
Query: 181 PFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTG---------LCPDGDECPF 231
++ + P+ +G+++Y+ + +C
Sbjct: 377 DYSSRSARSIRLPESTPIAGSNGTYSYNISGLTVPAGTESDRGGLAIQGRVCAKDSVLVD 436
Query: 232 LHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLRPPVYD---IKE 288
+ Y + T R V + A CA HG+ L +
Sbjct: 437 CSTELAEVLVIKSSHSYFNMSALTTTGRRE--VISNAKCASCHGDQQLNIHGARNDLAGQ 494
Query: 289 IQALENPEGDPNSNSNGPNALDKEGKLLTEDPKWQDTNYVLSNYKTEQCKRPPRLCRQGY 348
Q NP ++ + P+ + K L
Sbjct: 495 CQLCHNPNMLADATATNPSMTSFDFKQLIHGLHSSQFAGFEDLNYPGNI----------G 544
Query: 349 ACPQFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPE 408
C Q H + S + P + + P +C CH+ Q H
Sbjct: 545 NCAQCHINDSTGISTVALPLNAAVQPLALNNGTFTSPIA----AVCSNCHSSDATQNH-- 598
Query: 409 IYKSTKCNDVQQAGYCPRGVFCAFAH 434
+ + +A CAF H
Sbjct: 599 MRQQGAVFAGTKADATAGTETCAFCH 624
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
membrane, membrane, transmembrane, transport protein;
HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
3gi9_C* 3gi8_C
Length = 444
Score = 30.0 bits (68), Expect = 3.4
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 74 SKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
+ Y + +I I I I I I+ + + I+++ ++I+ + I
Sbjct: 109 AGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFA 168
Score = 28.8 bits (65), Expect = 6.0
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
I I I I+ + + I+++ ++I+ + I +I I
Sbjct: 123 FNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIH 174
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral
protein-immune system complex; NMR {Homo sapiens}
Length = 35
Score = 26.3 bits (58), Expect = 3.4
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 72 KRSKYIIIIIIIIIIIIIIIIIIIIIIII 100
KRSK ++ I I++++II+I+ + +II I
Sbjct: 1 KRSKLLLGIGILVLLIIVILGVPLIIFTI 29
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 29.6 bits (66), Expect = 3.8
Identities = 20/197 (10%), Positives = 67/197 (34%), Gaps = 19/197 (9%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIIIIIIIIIIIII 120
R +++ +II ++ + +++ + + I +++ + + +++I+ +I
Sbjct: 233 RIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTS 292
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHR 180
+ +I ++ +I +I II+ +++I + + P +++
Sbjct: 293 SAVPLIGKYMLFTMIFVISSIIVTVVVI--------NTHHRSPSTHTMPQWVRKIFINTI 344
Query: 181 P-FTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTGLCPDGDECPFLHRTAGDT 239
P F + ++ + + S + E P G
Sbjct: 345 PNVMFFSTMKRASKEKQENKIFADDIDISDISGKQVTGEVIFQTPLIKNPDVKSAIEGVK 404
Query: 240 ERRYHLRYYKTCMCVHD 256
H++ + +
Sbjct: 405 YIAEHMKSDEESSNAAE 421
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 29.8 bits (66), Expect = 4.1
Identities = 18/213 (8%), Positives = 59/213 (27%), Gaps = 33/213 (15%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIII---- 119
RK Y+I I ++I + + + + I +++ + +++ +
Sbjct: 244 RKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETA 303
Query: 120 ----IIIIIIIIIIIIIIIIIIIIIIIIII---------------IIIIDLIFDFTFMY- 159
+I ++ I+ ++ +++ I++ I ++ + M
Sbjct: 304 LAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSR 363
Query: 160 LKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDET 219
+ E L+ + + + + N + R + S +
Sbjct: 364 VDEIEQPDWQNDLKLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHGL--VPRVTPRI 421
Query: 220 TGLCPDGDECPFLHRTAGDTERRYHLRYYKTCM 252
+ + Y +
Sbjct: 422 GFGNNNENIAASDQLHDEIKSGIDSTNYIVKQI 454
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 77 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 119
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 121
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 94 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 98 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 140
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 99 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 141
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 100 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 143
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 102 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 103 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 104 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 105 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 147
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 106 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 149
++ I + I III + I+ + + + + + I I+ + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 29.5 bits (67), Expect = 4.8
Identities = 6/59 (10%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 71 RKRSKYIIII-----IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
++I I++ I I+ + I + + +++ ++I+
Sbjct: 89 PTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIV 147
Score = 29.5 bits (67), Expect = 5.1
Identities = 6/48 (12%), Positives = 19/48 (39%)
Query: 108 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDF 155
I++ I I+ + I + + +++ ++I+ F +
Sbjct: 106 SILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSY 153
>1xrh_A Ureidoglycolate dehydrogenase; structural genomics, protein
structure initiative, NYSGXRC, ALLD, GLXB8, B0517, PSI;
2.25A {Escherichia coli} SCOP: c.122.1.1
Length = 351
Score = 29.2 bits (66), Expect = 5.3
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 446 AGGLGPLDGTPGSGLS---DILAGGLPNSNL 473
L P G G GL D+L+G L
Sbjct: 216 VHALLPAAGPKGYGLMMMIDVLSGVLLGLPF 246
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY,
membrane protein, protein channels, protein transport;
3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1
PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Length = 436
Score = 29.1 bits (66), Expect = 5.3
Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 47/130 (36%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-------------------------- 108
K + II+ + ++ + I+ ++ ++II
Sbjct: 112 KLLSIIMCFVEAVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIG 171
Query: 109 IIIIIIII------------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
+ I + + + +I + I I II II+ ++++
Sbjct: 172 LFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVV------- 224
Query: 157 FMYLKEFRVE 166
Y + RVE
Sbjct: 225 --YAECMRVE 232
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB
complex, membrane protein; 1.90A {Aeropyrum pernix}
SCOP: f.14.1.1
Length = 132
Score = 28.0 bits (62), Expect = 6.3
Identities = 5/44 (11%), Positives = 25/44 (56%)
Query: 107 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIID 150
+ + ++ +I++++ + + ++ + ++ +I++II+ D
Sbjct: 10 LGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWAD 53
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle,
transport protein; HET: RBF; 3.60A {Staphylococcus
aureus}
Length = 189
Score = 27.9 bits (62), Expect = 8.1
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---IIIIIII 145
+I +II I++ I++ I+ +++ + +I + I + +II+ II II I+I
Sbjct: 112 LITGLIIATIVMTIVLSILNYFVLLPLYGMIFNLADIANNLKVIIVSGIIPFNIIKGIVI 171
Query: 146 IIIIDLIF 153
I+ L++
Sbjct: 172 SIVFILLY 179
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 28.6 bits (63), Expect = 8.4
Identities = 15/93 (16%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIII----------IIIIIIIIIIIIIIIIIIIIIIIIII 120
RK YII II ++I +++++ + I +++ I + +I +
Sbjct: 216 RKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPET 275
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ + +I +I ++ + ++I+ +I++++
Sbjct: 276 SLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSL 308
>3tia_A Neuraminidase; 6-bladed beta-propeller, calcium binding,
glycosylation, ANT hydrolase-hydrolase inhibitor
complex; HET: NAG BMA MAN LNV; 1.80A {Influenza a virus}
PDB: 3tib_A* 3tic_A* 2bat_A* 1ivd_A* 1inh_A* 1inw_A*
1inx_A* 1ivc_A* 1ing_A* 1ive_A* 1ivf_A* 1ivg_A* 1nn2_A*
2aep_A* 2aeq_A*
Length = 469
Score = 28.5 bits (63), Expect = 9.5
Identities = 14/88 (15%), Positives = 31/88 (35%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
II I + + I + ++ I I+ + + ++ III I I+
Sbjct: 7 IITIGSVSLTIATVCFLMQIAILATTVTLHFKQHECDSPASNQVMPCEPIIIERNITEIV 66
Query: 143 IIIIIIIDLIFDFTFMYLKEFRVEQCPL 170
+ I+ + + + QC +
Sbjct: 67 YLNNTTIEKEICPKVVEYRNWSKPQCQI 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.417
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,179,117
Number of extensions: 750932
Number of successful extensions: 3502
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2874
Number of HSP's successfully gapped: 306
Length of query: 711
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 611
Effective length of database: 3,909,693
Effective search space: 2388822423
Effective search space used: 2388822423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.5 bits)