RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3120
(711 letters)
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 41.2 bits (97), Expect = 6e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 410 YKSTKCNDVQQAGYCPRGVFCAFAHVDTEM 439
YK+ C +++G C G C FAH E+
Sbjct: 4 YKTELCRPFEESGTCKYGEKCQFAHGFHEL 33
Score = 38.1 bits (89), Expect = 9e-05
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 248 YKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLRP 281
YKT +C + G C K G C FAHG +LR
Sbjct: 4 YKTELCRP-FEESGTC-KYGEKCQFAHGFHELRS 35
Score = 28.5 bits (64), Expect = 0.19
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 367 KYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQ 404
+Y++ C + E C+ G+ CQ+ H E +
Sbjct: 3 RYKTELCRP------FEESGTCKYGEKCQFAHGFHELR 34
Score = 27.7 bits (62), Expect = 0.33
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 213 CTKYDETTGLCPDGDECPFLHRTAGDTERR 242
C + E +G C G++C F H G E R
Sbjct: 9 CRPF-EESGTCKYGEKCQFAH---GFHELR 34
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 34
Score = 40.8 bits (96), Expect = 7e-06
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 406 HPEIYKSTKCNDVQQAGYCPRGVFCAFAHVDTE 438
HP+ YK+ C G+CP G C F H E
Sbjct: 3 HPK-YKTELCRTFHTIGFCPYGPRCHFIHNADE 34
Score = 31.2 bits (71), Expect = 0.023
Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 248 YKTCMCVHDTDARGLCVKNGAHCAFAHG 275
YKT +C G C G C F H
Sbjct: 6 YKTELCRTFH-TIGFC-PYGPRCHFIHN 31
Score = 27.3 bits (61), Expect = 0.51
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 9/42 (21%)
Query: 361 RSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTE 402
R P KY++ C + C G C + H E
Sbjct: 2 RHP---KYKTELCRT------FHTIGFCPYGPRCHFIHNADE 34
Score = 26.6 bits (59), Expect = 1.1
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 213 CTKYDETTGLCPDGDECPFLH 233
C + T G CP G C F+H
Sbjct: 11 CRTF-HTIGFCPYGPRCHFIH 30
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 40.9 bits (96), Expect = 8e-06
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 410 YKSTKCNDVQQAGYCPRGVFCAFAHVDTEM 439
YK+ C ++G C G C FAH E+
Sbjct: 7 YKTELCRTYSESGRCRYGAKCQFAHGLGEL 36
Score = 40.5 bits (95), Expect = 1e-05
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 248 YKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLRPP 282
YKT +C + G C + GA C FAHG +LR
Sbjct: 7 YKTELCRTYS-ESGRC-RYGAKCQFAHGLGELRQA 39
Score = 28.6 bits (64), Expect = 0.23
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 367 KYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQ 404
+Y++ C + E C G CQ+ H E +
Sbjct: 6 RYKTELCRT------YSESGRCRYGAKCQFAHGLGELR 37
Score = 27.0 bits (60), Expect = 0.73
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 213 CTKYDETTGLCPDGDECPFLHRTAGDTERR 242
C Y +G C G +C F H G E R
Sbjct: 12 CRTY-SESGRCRYGAKCQFAH---GLGELR 37
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease
protein MetI {Escherichia coli [TaxId: 562]}
Length = 203
Score = 37.8 bits (87), Expect = 0.002
Identities = 8/76 (10%), Positives = 32/76 (42%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I+ +++ + ++ I +I ++ + + + I I ++ +
Sbjct: 128 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 187
Query: 139 IIIIIIIIIIIDLIFD 154
+++++I++ +I D
Sbjct: 188 LVLLVILVYLIQFAGD 203
Score = 35.8 bits (82), Expect = 0.009
Identities = 7/87 (8%), Positives = 30/87 (34%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+++ + ++ I +I ++ + + + I
Sbjct: 117 ASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGY 176
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIID 150
I ++ ++++++I++ +I D
Sbjct: 177 IGYNATVMNTVLVLLVILVYLIQFAGD 203
Score = 34.7 bits (79), Expect = 0.021
Identities = 7/73 (9%), Positives = 30/73 (41%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 142
I+ +++ + ++ I +I ++ + + + I I ++ +
Sbjct: 128 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 187
Query: 143 IIIIIIIDLIFDF 155
+++++I+ + F
Sbjct: 188 LVLLVILVYLIQF 200
Score = 33.5 bits (76), Expect = 0.055
Identities = 8/83 (9%), Positives = 33/83 (39%)
Query: 63 KCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 122
+ M ++ K ++ + ++ I +I ++ + + + I I
Sbjct: 119 RAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIG 178
Query: 123 IIIIIIIIIIIIIIIIIIIIIII 145
++ ++++++I++ +I
Sbjct: 179 YNATVMNTVLVLLVILVYLIQFA 201
Score = 30.8 bits (69), Expect = 0.33
Identities = 9/77 (11%), Positives = 30/77 (38%)
Query: 57 YLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
+Q K ++ E + I +I ++ + + + I I ++
Sbjct: 125 PMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVM 184
Query: 117 IIIIIIIIIIIIIIIII 133
++++++I++ +I
Sbjct: 185 NTVLVLLVILVYLIQFA 201
Score = 30.5 bits (68), Expect = 0.51
Identities = 12/127 (9%), Positives = 38/127 (29%), Gaps = 15/127 (11%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIII--------------IIIIIIIIIIIIIII 121
++++ + + + + +I + + ++ + + I+ I I
Sbjct: 2 WLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSI 61
Query: 122 IIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRP 181
II+++ +I +I+ I + I+ L ++ R
Sbjct: 62 PFIILLVWMIPFTRVIVGTSIGLQAAIVPLTV-GAAPFIARMVENALLEIPTGLIEASRA 120
Query: 182 FTCFHWH 188
Sbjct: 121 MGATPMQ 127
Score = 29.3 bits (65), Expect = 1.2
Identities = 7/73 (9%), Positives = 30/73 (41%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 144
I+ +++ + ++ I +I ++ + + + I I ++ +
Sbjct: 128 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 187
Query: 145 IIIIIDLIFDFTF 157
+++++ L++ F
Sbjct: 188 LVLLVILVYLIQF 200
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS
(YggB), transmembrane region {Escherichia coli [TaxId:
562]}
Length = 86
Score = 35.0 bits (81), Expect = 0.003
Identities = 14/74 (18%), Positives = 34/74 (45%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
Y + I+ + III+ +II +I + ++I I + + ++ II +I +
Sbjct: 1 YAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAAL 60
Query: 136 IIIIIIIIIIIIII 149
+ + +I ++
Sbjct: 61 GRVGVQTASVIAVL 74
Score = 34.2 bits (79), Expect = 0.007
Identities = 12/63 (19%), Positives = 28/63 (44%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
I+ + III+ +II +I + ++I I + + ++ II +I + +
Sbjct: 5 IVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVG 64
Query: 149 IDL 151
+
Sbjct: 65 VQT 67
Score = 32.7 bits (75), Expect = 0.020
Identities = 12/64 (18%), Positives = 27/64 (42%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLI 152
I+ + III+ +II +I + ++I I + + ++ II +I + +
Sbjct: 5 IVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVG 64
Query: 153 FDFT 156
Sbjct: 65 VQTA 68
Score = 32.3 bits (74), Expect = 0.026
Identities = 13/67 (19%), Positives = 30/67 (44%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 145
I+ + III+ +II +I + ++I I + + ++ II +I + +
Sbjct: 5 IVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVG 64
Query: 146 IIIIDLI 152
+ +I
Sbjct: 65 VQTASVI 71
Score = 30.4 bits (69), Expect = 0.14
Identities = 12/71 (16%), Positives = 31/71 (43%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
+ + III+ +II +I + ++I I + + ++ II +I + +
Sbjct: 4 NIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRV 63
Query: 135 IIIIIIIIIII 145
+ +I ++
Sbjct: 64 GVQTASVIAVL 74
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux
transporter AcrB transmembrane domain {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 37.4 bits (86), Expect = 0.003
Identities = 16/154 (10%), Positives = 49/154 (31%), Gaps = 8/154 (5%)
Query: 42 QSQLRGDLEKVDKILYLQTA-TKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIII 100
+ G L + L L M FVR S ++ + I +I++ + +
Sbjct: 16 TDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDSGNQAPSLYAISLIVVFLCLA 75
Query: 101 II-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIF 153
+ +++++ + +I ++ + + + ++ I + I+I
Sbjct: 76 ALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFA 135
Query: 154 DFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFHW 187
+ +E ++ + +
Sbjct: 136 KDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFI 169
Score = 37.0 bits (85), Expect = 0.004
Identities = 14/140 (10%), Positives = 48/140 (34%), Gaps = 9/140 (6%)
Query: 55 ILYLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIII----IIIIIIIIIIIIIIII 110
L+++ + F+ + I +I++ + + I +++++ + +I
Sbjct: 42 YLFVRLPSS-----FLPDSGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVI 96
Query: 111 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPL 170
++ + + + ++ I + I+I+ + D L E ++ +
Sbjct: 97 GALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRM 156
Query: 171 FLQHKCTQHRPFTCFHWHFM 190
L+ F +
Sbjct: 157 RLRPILMTSLAFILGVMPLV 176
Score = 33.1 bits (75), Expect = 0.068
Identities = 13/149 (8%), Positives = 46/149 (30%), Gaps = 2/149 (1%)
Query: 66 VCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 125
V +R +Y+++ +II++ + + + + + + I +I++ + + +
Sbjct: 19 VGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDSGNQAPSLYAISLIVVFLCLAALY 78
Query: 126 IIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCF 185
I +++++ + +I ++ F + + L K
Sbjct: 79 ESWSIPFSVMLVV--PLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAK 136
Query: 186 HWHFMNQRRRRPVRKRDGSFNYSPDTYCT 214
+ P +
Sbjct: 137 DLMDKEGKGLIEATLDAVRMRLRPILMTS 165
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 37.5 bits (86), Expect = 0.004
Identities = 26/177 (14%), Positives = 63/177 (35%), Gaps = 14/177 (7%)
Query: 76 YIIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
YII II ++I +++++ + + I +++ I + +I + + +
Sbjct: 4 YIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVP 63
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFHW 187
+I +I ++ + ++I++ +I L + LFL +
Sbjct: 64 LIGKYLIFVMFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGF----LPKYLGMQL 119
Query: 188 HFMNQRRRRPVRKRDGSFNY--SPDTYCTKYDETTGLCPDGDECPFLHRTAGDTERR 242
+ +P +R SF + Y K + + + + L R T
Sbjct: 120 EPSEETPEKPQPRRRSSFGIMIKAEEYILKKPRSELMFEEQKDRHGLKRVNKMTSDI 176
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 37.1 bits (85), Expect = 0.005
Identities = 21/196 (10%), Positives = 52/196 (26%), Gaps = 18/196 (9%)
Query: 76 YIIIIIIIIIIIIIIIIIIII--------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
Y+I I ++I + + + I +++ + +++ + + + +
Sbjct: 4 YVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAVPL 63
Query: 128 IIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCP--------LFLQHKCTQH 179
I ++ I+ ++ +I+ I+ T + L +
Sbjct: 64 IGKYLMFIMSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADESE 123
Query: 180 RPFTCFHWHFMNQRRRRPVRKRDGSFNYSP--DTYCTKYDETTGLCPDGDECPFLHRTAG 237
+P + K FN + K E GL P
Sbjct: 124 QPDWQNDLKLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNNE 183
Query: 238 DTERRYHLRYYKTCMC 253
+ L
Sbjct: 184 NIAASDQLHDEIKSGI 199
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 36.2 bits (83), Expect = 0.012
Identities = 10/77 (12%), Positives = 28/77 (36%)
Query: 97 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFT 156
++ I+++ I ++ I + +I++I+I I+ + + I
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 157 FMYLKEFRVEQCPLFLQ 173
++ PL +
Sbjct: 121 EYEPAATEQDKTPLQQK 137
Score = 36.2 bits (83), Expect = 0.014
Identities = 10/65 (15%), Positives = 28/65 (43%)
Query: 68 EFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 127
E + K + ++I +++ I+++ I ++ I + +I++I+I
Sbjct: 40 ELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILI 99
Query: 128 IIIII 132
I+
Sbjct: 100 ANAIV 104
Score = 35.0 bits (80), Expect = 0.030
Identities = 10/71 (14%), Positives = 26/71 (36%)
Query: 110 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCP 169
++ I+++ I ++ I + +I++I+I + I E +E
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 170 LFLQHKCTQHR 180
+ Q +
Sbjct: 121 EYEPAATEQDK 131
Score = 32.7 bits (74), Expect = 0.15
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 90 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++ I+++ I ++ I + +I++I+I I+
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIV 104
Score = 32.7 bits (74), Expect = 0.15
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 91 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
++ I+++ I ++ I + +I++I+I I+
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIV 104
Score = 32.7 bits (74), Expect = 0.15
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 92 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++ I+++ I ++ I + +I++I+I I+
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIV 104
Score = 32.7 bits (74), Expect = 0.15
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++ I+++ I ++ I + +I++I+I I+
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIV 104
Score = 32.7 bits (74), Expect = 0.15
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++ I+++ I ++ I + +I++I+I I+
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIV 104
Score = 32.7 bits (74), Expect = 0.15
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
++ I+++ I ++ I + +I++I+I I+
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIV 104
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 35.7 bits (81), Expect = 0.019
Identities = 28/291 (9%), Positives = 69/291 (23%), Gaps = 9/291 (3%)
Query: 4 QVKQYEKEISRLSGTPSIVCLSSNADLNSMSISALKCIQSQLRGDLEKVDKILYLQTATK 63
+ ++ E RL+G V +SS +++ AL + + D+++
Sbjct: 32 KNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALG---------IGEGDEVITPSMTWV 82
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+ V + +++ + +++ I I II + + I +
Sbjct: 83 STLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALG 142
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFT 183
I +I I F+F +K + + +
Sbjct: 143 ERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLR 202
Query: 184 CFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTGLCPDGDECPFLHRTAGDTERRY 243
+H + + L
Sbjct: 203 SLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIA 262
Query: 244 HLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLRPPVYDIKEIQALEN 294
+ + A F + R + + +L+
Sbjct: 263 AQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKT 313
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 422
Score = 34.2 bits (78), Expect = 0.055
Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 29/137 (21%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII------------ 120
K + II+ + ++ + I+ ++ ++II I II+I +
Sbjct: 109 CQKLLSIIMCFVEAVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSG 168
Query: 121 IIIIIIIIIIIIIIIII-----------------IIIIIIIIIIIIDLIFDFTFMYLKEF 163
I + I + I + + I I II +I +Y +
Sbjct: 169 IGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECM 228
Query: 164 RVEQCPLFLQHKCTQHR 180
RVE + K +
Sbjct: 229 RVEIPLAHGRIKGAVGK 245
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit
II {Escherichia coli [TaxId: 562]}
Length = 91
Score = 31.3 bits (71), Expect = 0.066
Identities = 8/72 (11%), Positives = 25/72 (34%), Gaps = 20/72 (27%)
Query: 109 IIIIIIIIIIIIIIIIIIIIIIIIIIII--------------------IIIIIIIIIIII 148
+I+ +++I++I I++ + + ++ + I+I
Sbjct: 14 QRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILI 73
Query: 149 IDLIFDFTFMYL 160
I + T+
Sbjct: 74 IIFLAVLTWKTT 85
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
pernix [TaxId: 56636]}
Length = 132
Score = 31.4 bits (71), Expect = 0.12
Identities = 9/102 (8%), Positives = 38/102 (37%), Gaps = 9/102 (8%)
Query: 73 RSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII- 131
+ + + ++ +I++++ + + ++ + ++ +I++II+
Sbjct: 4 EHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD 63
Query: 132 --------IIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRV 165
+ I ++ ++ +I L F ++ R
Sbjct: 64 PAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRF 105
>d2rh3a1 a.43.1.10 (A:82-202) VirC2 {Agrobacterium tumefaciens
[TaxId: 358]}
Length = 121
Score = 31.2 bits (70), Expect = 0.16
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 672 FLSSRPPAPGFGTTADNL 689
FLS+RPPAP DNL
Sbjct: 4 FLSARPPAPEVSKIYDNL 21
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 405
Score = 32.4 bits (73), Expect = 0.16
Identities = 9/90 (10%), Positives = 32/90 (35%)
Query: 65 MVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 124
+ + + I + + + + I++ ++ I + I++
Sbjct: 294 LGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLA 353
Query: 125 IIIIIIIIIIIIIIIIIIIIIIIIIDLIFD 154
+++ + + + + +I+ ID I D
Sbjct: 354 MVLHSVGLPLTDPNVAAAYAMILGIDAILD 383
Score = 31.2 bits (70), Expect = 0.49
Identities = 11/128 (8%), Positives = 41/128 (32%), Gaps = 11/128 (8%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII-- 132
+ I+I +I+ I+ +I+ + + + + ++ ++++ I+ +++
Sbjct: 3 QKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASI 62
Query: 133 ---------IIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFT 183
+ I++ ++ + + +I F + Q
Sbjct: 63 SPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHI 122
Query: 184 CFHWHFMN 191
N
Sbjct: 123 LLDIVPTN 130
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Length = 509
Score = 32.5 bits (73), Expect = 0.18
Identities = 7/52 (13%), Positives = 22/52 (42%)
Query: 75 KYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+YI + +++++ I I+ + I II + + + ++ +
Sbjct: 449 RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLA 500
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 31.9 bits (71), Expect = 0.27
Identities = 13/183 (7%), Positives = 48/183 (26%), Gaps = 3/183 (1%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII---IIIIIIIIIIIIIIIIIIIII 132
Y + ++ + ++I++ I + + + + + + I++ + + + ++
Sbjct: 29 YYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF 88
Query: 133 IIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQ 192
+ + + + E L + C
Sbjct: 89 GGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF 148
Query: 193 RRRRPVRKRDGSFNYSPDTYCTKYDETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCM 252
+ ++ + + P+G +C E + +
Sbjct: 149 GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMF 208
Query: 253 CVH 255
VH
Sbjct: 209 VVH 211
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 250
Score = 31.3 bits (70), Expect = 0.29
Identities = 29/196 (14%), Positives = 68/196 (34%), Gaps = 9/196 (4%)
Query: 76 YIIIIIIIIIIIIIIIIIIIII-------IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
YI+ II I+I I+ I++ + + + I ++ + + ++++ + + + I
Sbjct: 4 YIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSVPI 63
Query: 129 IIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWH 188
II ++ I+I++ +I+ ++ L +F++
Sbjct: 64 IIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTP 123
Query: 189 FMNQRRRRPVRKRDGSFNYSP--DTYCTKYDETTGLCPDGDECPFLHRTAGDTERRYHLR 246
+ + R D F P D C + + P+ G T+ +
Sbjct: 124 SPDSKPTIISRANDEYFIRKPAGDFVCPVDNARVAVQPERLFSEMKWHLNGLTQPVTLPQ 183
Query: 247 YYKTCMCVHDTDARGL 262
K + A L
Sbjct: 184 DLKEAVEAIKYIAEQL 199
Score = 27.8 bits (61), Expect = 4.0
Identities = 25/183 (13%), Positives = 66/183 (36%), Gaps = 24/183 (13%)
Query: 76 YIIIIIIIIIIIIIIIIIIII---------IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 126
+ I+ II I+I I+ I++ + + I ++ + + ++++ + + +
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSVP 62
Query: 127 IIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFH 186
III ++ I+I++ +I+ +++ + + + F
Sbjct: 63 IIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHT------------MPNWIRQIFIETL 110
Query: 187 WHFMNQRRRRPVRKRDGSFNYSP---DTYCTKYDETTGLCPDGDECPFLHRTAGDTERRY 243
F+ +R D D Y + +CP + + +E ++
Sbjct: 111 PPFLWIQRPVTTPSPDSKPTIISRANDEYFIRKPAGDFVCPVDNARVAVQPERLFSEMKW 170
Query: 244 HLR 246
HL
Sbjct: 171 HLN 173
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase,
subunit II {Cow (Bos taurus) [TaxId: 9913]}
Length = 90
Score = 29.4 bits (66), Expect = 0.38
Identities = 10/53 (18%), Positives = 28/53 (52%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 128
+ ++I+ +I +++ II +++ + + + I I+ II+I+I +
Sbjct: 26 HTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIAL 78
Score = 28.6 bits (64), Expect = 0.58
Identities = 13/64 (20%), Positives = 34/64 (53%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
++I+ +I +++ II +++ + + + I I+ II+I+I + + I+ +
Sbjct: 27 TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYM 86
Query: 149 IDLI 152
+D I
Sbjct: 87 MDEI 90
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 78 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 129
++I+ +I +++ II +++ + + + I I+ II+I+I +
Sbjct: 27 TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIAL 78
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
++I+ +I +++ II +++ + + + I I+ II+I+I +
Sbjct: 27 TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIAL 78
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 80 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 131
++I+ +I +++ II +++ + + + I I+ II+I+I +
Sbjct: 27 TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIAL 78
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 81 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 132
++I+ +I +++ II +++ + + + I I+ II+I+I +
Sbjct: 27 TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIAL 78
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 82 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 133
++I+ +I +++ II +++ + + + I I+ II+I+I +
Sbjct: 27 TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIAL 78
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 83 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 134
++I+ +I +++ II +++ + + + I I+ II+I+I +
Sbjct: 27 TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIAL 78
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 84 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
++I+ +I +++ II +++ + + + I I+ II+I+I +
Sbjct: 27 TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIAL 78
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 85 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 136
++I+ +I +++ II +++ + + + I I+ II+I+I +
Sbjct: 27 TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIAL 78
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 137
++I+ +I +++ II +++ + + + I I+ II+I+I +
Sbjct: 27 TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIAL 78
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 87 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
++I+ +I +++ II +++ + + + I I+ II+I+I +
Sbjct: 27 TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIAL 78
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 88 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 139
++I+ +I +++ II +++ + + + I I+ II+I+I +
Sbjct: 27 TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIAL 78
Score = 27.0 bits (60), Expect = 2.6
Identities = 10/62 (16%), Positives = 30/62 (48%)
Query: 101 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYL 160
++I+ +I +++ II +++ + + + I I+ II+I+ + +Y+
Sbjct: 27 TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYM 86
Query: 161 KE 162
+
Sbjct: 87 MD 88
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 31.3 bits (70), Expect = 0.41
Identities = 3/72 (4%), Positives = 28/72 (38%)
Query: 71 RKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 130
+R K + I+ + ++ ++ + + + + + ++ +++ + +
Sbjct: 10 LERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLC 69
Query: 131 IIIIIIIIIIII 142
++ + ++
Sbjct: 70 SAVLAMFGYFLV 81
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter,
permease protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 248
Score = 30.7 bits (68), Expect = 0.47
Identities = 11/83 (13%), Positives = 30/83 (36%)
Query: 58 LQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 117
L S ++I ++ I ++I+ ++ +I I
Sbjct: 165 LGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISY 224
Query: 118 IIIIIIIIIIIIIIIIIIIIIII 140
+ I +++I++ + I ++I
Sbjct: 225 GLSASRPIAVLLILVTLSIFLVI 247
Score = 30.7 bits (68), Expect = 0.54
Identities = 10/87 (11%), Positives = 34/87 (39%)
Query: 61 ATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
A + + + + + ++I ++ I ++I+ ++ +I
Sbjct: 161 AARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDR 220
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIII 147
I + I +++I++ + I ++I
Sbjct: 221 FISYGLSASRPIAVLLILVTLSIFLVI 247
Score = 28.4 bits (62), Expect = 2.5
Identities = 10/85 (11%), Positives = 35/85 (41%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
+ + K ++ + + ++I ++ I ++I+ ++ +I I
Sbjct: 163 RSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFI 222
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIII 148
+ I +++I++ + I ++I
Sbjct: 223 SYGLSASRPIAVLLILVTLSIFLVI 247
Score = 28.4 bits (62), Expect = 3.0
Identities = 9/86 (10%), Positives = 34/86 (39%)
Query: 64 CMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 123
++ + + + + ++I ++ I ++I+ ++ +I
Sbjct: 162 ARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRF 221
Query: 124 IIIIIIIIIIIIIIIIIIIIIIIIII 149
I + I +++I++ + I ++I
Sbjct: 222 ISYGLSASRPIAVLLILVTLSIFLVI 247
Score = 28.4 bits (62), Expect = 3.0
Identities = 10/90 (11%), Positives = 32/90 (35%)
Query: 57 YLQTATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 116
A + + + ++I ++ I ++I+ ++ +I
Sbjct: 158 LENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLI 217
Query: 117 IIIIIIIIIIIIIIIIIIIIIIIIIIIIII 146
I + I +++I++ + I ++I
Sbjct: 218 YDRFISYGLSASRPIAVLLILVTLSIFLVI 247
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
{Campylobacter jejuni [TaxId: 197]}
Length = 374
Score = 29.6 bits (65), Expect = 1.5
Identities = 21/255 (8%), Positives = 67/255 (26%), Gaps = 12/255 (4%)
Query: 4 QVKQYEKEISRLSGTPSIVCLSSNADLNSMSISALKCIQSQLRGDLEKVDKIL---YLQT 60
V ++E+ + S + + + L+S +++ +++ D +L +
Sbjct: 22 FVNRFEQSVKDYSKSENALALNSATAALHLALRVA---------GVKQDDIVLASSFTFI 72
Query: 61 ATKCMVCEFVRKRSKYIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 120
A+ +C K I + ++ + I +I+ + + I+
Sbjct: 73 ASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVE 132
Query: 121 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHR 180
I I++I + + +++ K + + +
Sbjct: 133 ICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIE 192
Query: 181 PFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTGLCPDGDECPFLHRTAGDTE 240
+ ++ S + L + ++ +
Sbjct: 193 KARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFL 252
Query: 241 RRYHLRYYKTCMCVH 255
Y +
Sbjct: 253 GEYFSFLDELENSRS 267
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 227
Score = 28.9 bits (64), Expect = 1.7
Identities = 11/135 (8%), Positives = 50/135 (37%), Gaps = 3/135 (2%)
Query: 76 YIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 135
+++ +II ++ + ++ + + + I +++ + + +++I+ +I + +
Sbjct: 4 FVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPL 63
Query: 136 IIIIIIIIIIIIIIDLIFDFTFMYLKEFRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRR 195
I ++ +I +I +I + + + +
Sbjct: 64 IGKYMLFTMIFVISSIIITVVVINTHHRSPSTHT---MPQWVRKIFIDTIPNVMFFSTMK 120
Query: 196 RPVRKRDGSFNYSPD 210
R +++ + ++ D
Sbjct: 121 RASKEKQENKIFADD 135
>d1ofwa_ a.138.1.1 (A:) Nine-heme cytochrome c {Desulfovibrio
desulfuricans, ATCC 27774 [TaxId: 876]}
Length = 293
Score = 29.1 bits (63), Expect = 1.8
Identities = 24/194 (12%), Positives = 42/194 (21%), Gaps = 10/194 (5%)
Query: 215 KYDETTGLCPDGDECPFLHRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAH 274
Y + + H + K A ++ A CA H
Sbjct: 72 NYITLDRAMHATNIAKRAKGNTPVSCVSCHEQQTKERRECAGCHAIVTPKRDEAWCATCH 131
Query: 275 GNPDLRPPVYDIKEIQALENPEGDPNSNSNGPNALDKEGKLLTEDPKWQDTNYVLSNYKT 334
P K I P GD + + K + ++ K
Sbjct: 132 NITPSMTPEQMQKGINGTLLP-GDNEALAAETVLAQKTVEPVSPMLAPYKVVIDALADKY 190
Query: 335 EQCKRPPRLCRQGYACPQFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLC 394
E R + + + +T + C
Sbjct: 191 EPSNFTHRRHLTSLMERIKDDKLAQAFHNKPEILCATCHHRSPLS---------LTPPKC 241
Query: 395 QYCHTRTEQQFHPE 408
CHT+ + +P
Sbjct: 242 GSCHTKEIDKANPG 255
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase
subunit II {Paracoccus denitrificans [TaxId: 266]}
Length = 107
Score = 27.6 bits (61), Expect = 1.8
Identities = 9/74 (12%), Positives = 30/74 (40%)
Query: 89 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 148
+ ++ II + I + ++++I I+ + I +I ++ ++I++
Sbjct: 31 QQWLDHFVLYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHNTPIEVIWTLVPVLILV 90
Query: 149 IDLIFDFTFMYLKE 162
F ++ +
Sbjct: 91 AIGAFSLPILFRSQ 104
>d2axtd1 f.26.1.1 (D:13-352) Photosystem II reaction center d2
protein PsbD2 {Thermosynechococcus elongatus [TaxId:
146786]}
Length = 340
Score = 28.2 bits (63), Expect = 3.6
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 11/67 (16%)
Query: 633 NSTNSGSHHFGGPLESIVG--------GTSALSSNNFSPTTSSPLSHFLSSRPPAPGFGT 684
+N HF + G AL+ ++ + + P F T
Sbjct: 248 AFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQ---EIRAAEDPEFETFYT 304
Query: 685 TADNLNQ 691
LN+
Sbjct: 305 KNLLLNE 311
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 28.1 bits (61), Expect = 4.7
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 431 AFAHVDTEMANAREMAGGLGPLDGTP 456
T+ A G L G P
Sbjct: 77 CVTSYLTDCETQLSQAPRQGLLYGVP 102
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 26.4 bits (58), Expect = 6.0
Identities = 8/82 (9%), Positives = 32/82 (39%)
Query: 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 138
I++++++ ++ ++ I + +++ I + + +++ I I
Sbjct: 38 ILVLLVLPFTDRSVVRGNTFKVLSKFFFFIFVFNFVLLGQIGACHVEVPYVLMGQIATFI 97
Query: 139 IIIIIIIIIIIDLIFDFTFMYL 160
+II+ + + Y+
Sbjct: 98 YFAYFLIIVPVISTIENVLFYI 119
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 27.4 bits (59), Expect = 6.7
Identities = 27/237 (11%), Positives = 49/237 (20%), Gaps = 13/237 (5%)
Query: 173 QHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTGLCPDGDECPFL 232
+ + PF + + R G + E L
Sbjct: 89 EARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDL---DHEMLALSLRLLGRALF 145
Query: 233 HRTAGDTERRYHLRYYKTCMCVHDTDARGLCVKNGAHCAFAHGNPDLRPPVYDIKEIQAL 292
+ + + L+ M + L + A G E +
Sbjct: 146 GKPLSPSLAEHALKALDRIMAQTRSPLALLDLAAEARFRKDRGALY------REAEALIV 199
Query: 293 ENPEGDPNSNSNGPNALD-KEGKLLTEDPKWQDTNYVLSNYKTEQCKRPPRLCRQGYACP 351
P A+ T + +LS+ Q + + A
Sbjct: 200 HPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVA---ESEEAALA 256
Query: 352 QFHNSRDKRRSPRTFKYRSTPCPNVKHGDEWGEPANCESGDLCQYCHTRTEQQFHPE 408
F + R + S + Q H + F PE
Sbjct: 257 AFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLHFPDGEAFRPE 313
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.417
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,809,284
Number of extensions: 150087
Number of successful extensions: 1136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 100
Length of query: 711
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 619
Effective length of database: 1,144,436
Effective search space: 708405884
Effective search space used: 708405884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)