Query psy3121
Match_columns 190
No_of_seqs 34 out of 36
Neff 1.7
Searched_HMMs 29240
Date Fri Aug 16 16:59:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqe_A KIAA1064 protein; CCCH 57.8 4.6 0.00016 28.8 1.8 35 153-189 14-52 (98)
2 1m9o_A Tristetraproline; Cys3H 33.4 19 0.00066 23.2 1.7 32 104-137 9-41 (77)
3 3hms_A Hepatocyte growth facto 26.2 14 0.00047 27.3 -0.0 22 107-132 42-65 (101)
4 2hm3_A Nematocyst outer WALL a 22.6 25 0.00085 21.9 0.6 8 181-188 4-11 (31)
5 1cl8_A Protein (endonuclease); 21.0 38 0.0013 29.4 1.7 29 119-147 159-187 (276)
6 2cqe_A KIAA1064 protein; CCCH 21.0 36 0.0012 24.0 1.3 48 105-175 11-58 (98)
7 2elm_A Zinc finger protein 406 17.1 42 0.0014 17.5 0.7 9 119-127 5-13 (37)
8 2zko_A NS1, NS1A, non-structur 15.7 19 0.00066 26.0 -1.2 7 125-131 15-21 (73)
9 2eln_A Zinc finger protein 406 15.5 50 0.0017 19.1 0.8 9 119-127 5-13 (38)
10 3gku_A Probable RNA-binding pr 14.9 71 0.0024 26.1 1.8 37 10-46 9-45 (225)
No 1
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=57.81 E-value=4.6 Score=28.75 Aligned_cols=35 Identities=34% Similarity=0.643 Sum_probs=23.9
Q ss_pred eeeeeccCCcccCCCCCCCCceE----eeeeccccCCCCCC
Q psy3121 153 TYCTKYDETTGLCPDGDDPDTYC----TKYDETTGLCPDGD 189 (190)
Q Consensus 153 VYCskYDE~TG~CP~GDterkYh----lRYyk~TGsCp~gd 189 (190)
.-|.-| .+|.|..||.=+--| -+|+..+|.|+.|+
T Consensus 14 ~lC~~f--~~G~C~~G~~C~f~H~~~~C~~f~~~G~C~~G~ 52 (98)
T 2cqe_A 14 ELCKFY--ITGFCARAENCPYMHGDFPCKLYHTTGNCINGD 52 (98)
T ss_dssp SBCTTT--TTTCCSCSTTCSSBSSSSBCSHHHHTSCCSSCT
T ss_pred ccCccc--ccCcCCCCCCCCCCCCCCcCcCcccCCcCCCCC
Confidence 457767 358888888544444 46664589999886
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=33.44 E-value=19 Score=23.21 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=22.4
Q ss_pred hhccccCchhh-cccccCCCceeeeecccCccccc
Q psy3121 104 EFRVEQCPLFL-QHKCTQHRPFTCFHWHFMNQRRR 137 (190)
Q Consensus 104 eFRveqCplF~-QhkC~qHRPyTCF~WHF~NQRRR 137 (190)
.|.++-|+.|. +..|..- -.|=+-|-...-|.
T Consensus 9 ~~kt~~C~~f~~~G~C~~G--~~C~f~H~~~e~~~ 41 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYG--AKCQFAHGLGELRQ 41 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTT--TTCSSCSSSCCGGG
T ss_pred CccchhCHHhhhCCCcCCC--CCccCCCCChhhcc
Confidence 46889999995 7788742 24777787665543
No 3
>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A
Probab=26.24 E-value=14 Score=27.30 Aligned_cols=22 Identities=41% Similarity=1.070 Sum_probs=16.8
Q ss_pred cccCchhhcccccCCC--ceeeeecccC
Q psy3121 107 VEQCPLFLQHKCTQHR--PFTCFHWHFM 132 (190)
Q Consensus 107 veqCplF~QhkC~qHR--PyTCF~WHF~ 132 (190)
+|+|- .+|.+++ +|+|=-|||-
T Consensus 42 ~eeCA----~kC~~~~~~~F~CRAF~y~ 65 (101)
T 3hms_A 42 ADQCA----NRCTRNKGLPFTCKAFVFD 65 (101)
T ss_dssp HHHHH----HHHHHCTTCSSCCCEEEEE
T ss_pred HHHHH----HHHHhccCCCcceeeeEEe
Confidence 46674 7999999 9999666664
No 4
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=22.57 E-value=25 Score=21.89 Aligned_cols=8 Identities=63% Similarity=1.389 Sum_probs=4.2
Q ss_pred cccCCCCC
Q psy3121 181 TTGLCPDG 188 (190)
Q Consensus 181 ~TGsCp~g 188 (190)
.||+||.|
T Consensus 4 itgtcpsg 11 (31)
T 2hm3_A 4 ITGTCPSG 11 (31)
T ss_dssp ---CCCTT
T ss_pred ccccCCCC
Confidence 38899876
No 5
>1cl8_A Protein (endonuclease); endonuclease/DNA, DNA base analog, protein/DNA complex; HET: DNA PRN; 1.80A {Escherichia coli} SCOP: c.52.1.1 PDB: 1ckq_A* 1eri_A* 1qc9_A 2oxv_A* 1qps_A 1qrh_A 1qri_A
Probab=21.04 E-value=38 Score=29.44 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=20.2
Q ss_pred cCCCceeeeecccCcccccCCcccCCCCC
Q psy3121 119 TQHRPFTCFHWHFMNQRRRRPVRKRDGSF 147 (190)
Q Consensus 119 ~qHRPyTCF~WHF~NQRRRRPvr~~DGtF 147 (190)
..|=||.||-|------.--.|.||||-.
T Consensus 159 E~~fPyV~Fl~GsnF~t~~~~v~rpdgrv 187 (276)
T 1cl8_A 159 ESHFPYVLFLEGSNFLTENISITRPDGRV 187 (276)
T ss_dssp CSBCCEEEEEESTTSCSSCEEEECTTSCE
T ss_pred cCCCceEEEeccCCcccCceeeecCCCce
Confidence 46889999998644444455677788743
No 6
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=21.00 E-value=36 Score=24.04 Aligned_cols=48 Identities=29% Similarity=0.509 Sum_probs=29.9
Q ss_pred hccccCchhhcccccCCCceeeeecccCcccccCCcccCCCCCccCCceeeeeccCCcccCCCCCCCCceE
Q psy3121 105 FRVEQCPLFLQHKCTQHRPFTCFHWHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTGLCPDGDDPDTYC 175 (190)
Q Consensus 105 FRveqCplF~QhkC~qHRPyTCF~WHF~NQRRRRPvr~~DGtFNYSPDVYCskYDE~TG~CP~GDterkYh 175 (190)
.+.+-|..|++..|..-- .|=+.|- ..-|..|-.. |.|+.||.=+--|
T Consensus 11 ~k~~lC~~f~~G~C~~G~--~C~f~H~--------------------~~~C~~f~~~-G~C~~G~~C~f~H 58 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAE--NCPYMHG--------------------DFPCKLYHTT-GNCINGDDCMFSH 58 (98)
T ss_dssp CCCSBCTTTTTTCCSCST--TCSSBSS--------------------SSBCSHHHHT-SCCSSCTTCSSBC
T ss_pred CCCccCcccccCcCCCCC--CCCCCCC--------------------CCcCcCcccC-CcCCCCCCCcccC
Confidence 466778888877887432 5666665 3446655433 7787777544444
No 7
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.06 E-value=42 Score=17.48 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=6.2
Q ss_pred cCCCceeee
Q psy3121 119 TQHRPFTCF 127 (190)
Q Consensus 119 ~qHRPyTCF 127 (190)
++.|||.|=
T Consensus 5 ~~~k~~~C~ 13 (37)
T 2elm_A 5 SSGHLYYCS 13 (37)
T ss_dssp SSSCEEECS
T ss_pred CCCcCeECC
Confidence 456888884
No 8
>2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A 3m8a_A
Probab=15.67 E-value=19 Score=26.03 Aligned_cols=7 Identities=57% Similarity=1.754 Sum_probs=5.8
Q ss_pred eeeeccc
Q psy3121 125 TCFHWHF 131 (190)
Q Consensus 125 TCF~WHF 131 (190)
-||.||.
T Consensus 15 dcflWHv 21 (73)
T 2zko_A 15 DCFLWHV 21 (73)
T ss_dssp HHHHHHH
T ss_pred eehhHHH
Confidence 4999995
No 9
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=15.54 E-value=50 Score=19.06 Aligned_cols=9 Identities=11% Similarity=0.202 Sum_probs=6.5
Q ss_pred cCCCceeee
Q psy3121 119 TQHRPFTCF 127 (190)
Q Consensus 119 ~qHRPyTCF 127 (190)
++.|||.|=
T Consensus 5 ~gekp~~C~ 13 (38)
T 2eln_A 5 SSGILLKCP 13 (38)
T ss_dssp SCCCCEECS
T ss_pred CCCCCCCCC
Confidence 357899883
No 10
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=14.93 E-value=71 Score=26.12 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=27.1
Q ss_pred eeecCCcchhHHHHhhhhcceEEEEEEEeecccceee
Q psy3121 10 FSVNDPRGYVDKAMHALSSTIVEINVEVLEHSNIGLV 46 (190)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (190)
|+-..-.--+.+|...|.-+.-++++||||...-|+.
T Consensus 9 ~~gkTveeAi~~Al~~L~v~~d~l~~eVleeg~kGff 45 (225)
T 3gku_A 9 VTAKTVEEAVTKALIELQTTSDKLTYEIVEKGSAGFL 45 (225)
T ss_dssp EEESSHHHHHHHHHHHHTCCGGGEEEEEEECCBCCC-
T ss_pred EEECCHHHHHHHHHHHhCCCHHHEEEEEEecCCCccc
Confidence 3333333456788888999999999999999776664
Done!